17-03-17 17:49:38.198 -07 000000610 INF: =================== Cycle #6 ===================
17-03-17 17:49:38.198 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-17 17:49:38.198 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8325 mm, delta = 0.5481 mm
17-03-17 17:49:38.198 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:49:38.208 -07 000000448 INF: FPGA: Recv YRDPOS 153258
17-03-17 17:49:38.208 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 17:49:38.208 -07 000000610 INF: Y Motor: Encoder = 153258 = motor step 119732.8 = 74.8330 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:49:38.208 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-17 17:49:38.208 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-17 17:49:38.208 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-17 17:49:38.328 -07 000000478 INF: FPGA: Recv YMVTO 154377 871
17-03-17 17:49:38.328 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 111 ms to get response, and 116 ms overall
17-03-17 17:49:38.328 -07 000000610 INF: Y Motor: Position error before settling = -2 encoder counts (-0.001 mm)
17-03-17 17:49:38.328 -07 000000610 INF: Y Motor: To move from 74.833 to 75.381 (0.548 mm) should take 876 steps, but required 871 steps (0.544 mm). Slippage = -0.003 mm (-0.01%).
17-03-17 17:49:38.328 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 116 ms, distance = 0.548 mm, average velocity = 4.725 mm/sec
17-03-17 17:49:39.908 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 6, FrontChillerTemperature: 3.952638,
17-03-17 17:49:41.328 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:49:41.328 -07 000000608 INF: FPGA: Recv YRDPOS 154381
17-03-17 17:49:41.338 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:49:41.338 -07 000000610 INF: Y Motor: Encoder = 154381 = motor step 120610.2 = 75.3813 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:49:41.348 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.000768, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:49:41.348 -07 000000610 INF: Y Motor: Position error after settling = 2 encoder counts (0.001 mm), Delta during settling = 4 counts (0.002 mm)
17-03-17 17:49:41.348 -07 000000610 INF: Y Motor: Moved to 75.3813 after 3146 ms
17-03-17 17:49:41.358 -07 000000610 INF: =================== Cycle #6, Flow Cell Temp 60° ===================
17-03-17 17:49:41.358 -07 000000610 INF: =================== Cycle #6, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-17 17:49:41.358 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-17 17:49:41.358 -07 000000551 INF: FPGA: Recv TEC2TEMP 
17-03-17 17:49:41.368 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:49:41.388 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 17:49:41.388 -07 000000547 INF: FPGA: Recv TEC2EN 
17-03-17 17:49:41.398 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:49:41.398 -07 000000610 INF: =================== Cycle #6, Flow Cell Temp 60° ===================
17-03-17 17:49:41.398 -07 000000610 INF: =================== Cycle #6 ===================
17-03-17 17:49:41.398 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 17:49:41.398 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:49:41.428 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 17:49:41.428 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-17 17:49:41.428 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 17:49:41.538 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:49:41.538 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 5. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=4, R2=5, Total=9. Bubbles this run: R1=41, R2=48, Total=89. Warn if over 250 bubbles per interval.
17-03-17 17:49:41.728 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 17:49:41.748 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 17:49:41.748 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 17:49:41.798 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:49:41.818 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 17:49:41.818 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 17:49:41.918 -07 000000610 INF: =================== Cycle #6, Pumping Reagent PR2 (3) ===================
17-03-17 17:49:41.918 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 17:49:41.918 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:49:41.948 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 17:49:41.948 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 17:49:41.948 -07 000000610 INF: =================== Cycle #6, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 17:49:42.078 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 17:49:42.118 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:49:45.248 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:49:45.268 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 6, FrontChillerTemperature: 3.922606,
17-03-17 17:49:45.278 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:49:45.698 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:49:45.728 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:49:46.148 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:49:46.178 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:49:46.178 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 17:49:46.178 -07 000000610 INF: =================== Cycle #6, Pumping Reagent PR2 (3) ===================
17-03-17 17:49:46.308 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:49:46.338 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 17:49:46.338 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 17:49:46.468 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:49:46.498 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 17:49:46.498 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 17:49:46.498 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 17:49:46.538 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 9 R1 9
17-03-17 17:49:46.538 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 5. Bubbles during last 5000 ms interval: R1=9, R2=9, Total=18. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=50, R2=57, Total=107. Warn if over 250 bubbles per interval.
17-03-17 17:49:46.628 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 17:49:46.658 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:49:47.088 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:49:47.118 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:49:47.118 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 17:49:47.118 -07 000000610 INF: =================== Cycle #6 ===================
17-03-17 17:49:48.338 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 17:49:48.338 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-17 17:49:48.338 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:49:48.358 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 17:49:48.358 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-17 17:49:48.358 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-17 17:49:48.488 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 17:49:48.508 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-17 17:49:48.508 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-17 17:49:48.558 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:49:48.578 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 17:49:48.578 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 17:49:48.678 -07 000000610 INF: =================== Cycle #6, Pumping Reagent CMS (4) ===================
17-03-17 17:49:48.678 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 17:49:48.678 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:49:48.708 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 17:49:48.708 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 17:49:48.708 -07 000000610 INF: =================== Cycle #6, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-17 17:49:48.838 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 17:49:48.878 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:49:50.318 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:49:50.348 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:49:50.628 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 6, FrontChillerTemperature: 3.919889,
17-03-17 17:49:50.768 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:49:50.798 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:49:50.798 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 17:49:50.798 -07 000000610 INF: =================== Cycle #6, Pumping Reagent CMS (4) ===================
17-03-17 17:49:50.928 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:49:50.958 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 17:49:50.958 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 17:49:51.088 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:49:51.118 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 17:49:51.118 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 17:49:51.118 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 17:49:51.248 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 17:49:51.278 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:49:51.538 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-17 17:49:51.538 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 5. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=51, R2=58, Total=109. Warn if over 250 bubbles per interval.
17-03-17 17:49:51.708 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:49:51.738 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:49:51.738 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 17:49:51.738 -07 000000610 INF: =================== Cycle #6 ===================
17-03-17 17:49:52.958 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 17:49:52.958 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 17:49:52.958 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:49:52.978 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 17:49:52.978 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-17 17:49:52.978 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-17 17:49:53.128 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 17:49:53.148 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-17 17:49:53.148 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-17 17:49:53.198 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:49:53.218 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 17:49:53.218 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 17:49:53.318 -07 000000610 INF: =================== Cycle #6, Pumping Reagent PR2 (3) ===================
17-03-17 17:49:53.318 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 17:49:53.318 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:49:53.348 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 17:49:53.348 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 17:49:53.348 -07 000000610 INF: =================== Cycle #6, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 17:49:53.478 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 17:49:53.518 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:49:54.388 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:49:54.418 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:49:54.418 -07 000000610 INF: LanePump: Waited 900 ms for pump motion to complete
17-03-17 17:49:54.418 -07 000000610 INF: =================== Cycle #6, Pumping Reagent PR2 (3) ===================
17-03-17 17:49:54.548 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:49:54.578 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 17:49:54.578 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 17:49:54.708 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:49:54.738 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 17:49:54.738 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 17:49:54.738 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 17:49:54.868 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 17:49:54.898 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:49:55.328 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:49:55.358 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:49:55.358 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 17:49:55.358 -07 000000610 INF: =================== Cycle #6 ===================
17-03-17 17:49:55.358 -07 000000541 INF: WaitCommand(10000) start
17-03-17 17:49:55.358 -07 000000551 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 17:49:55.358 -07 000000551 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 17:49:55.988 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 6, FrontChillerTemperature: 3.928111,
17-03-17 17:49:56.538 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 17:49:56.538 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 5. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=51, R2=59, Total=110. Warn if over 250 bubbles per interval.
17-03-17 17:49:56.578 -07 000000551 INF: AsyncDelayTimer waited 1216ms
17-03-17 17:49:56.578 -07 000000551 INF: LanePump: Xmit /1?\r
17-03-17 17:49:56.608 -07 000000551 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 17:49:56.608 -07 000000551 INF: LanePump: Current Position of Pump is: 1110
17-03-17 17:49:56.738 -07 000000551 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 17:49:56.778 -07 000000551 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:49:58.308 -07 000000551 INF: LanePump: Xmit /1Q\r
17-03-17 17:49:58.338 -07 000000551 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:49:58.758 -07 000000551 INF: LanePump: Xmit /1Q\r
17-03-17 17:49:58.788 -07 000000551 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:49:58.788 -07 000000551 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 17:49:58.788 -07 000000551 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 17:49:58.788 -07 000000551 INF: ===================  ===================
17-03-17 17:50:01.348 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 6, FrontChillerTemperature: 3.947167,
17-03-17 17:50:01.538 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:50:01.538 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 5. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=51, R2=59, Total=110. Warn if over 250 bubbles per interval.
17-03-17 17:50:05.368 -07 000000541 INF: WaitCommand(10000) end
17-03-17 17:50:05.368 -07 000000610 INF: =================== Cycle #6, Pumping Reagent PR2 (3) ===================
17-03-17 17:50:05.368 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-17 17:50:05.368 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:50:05.398 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 17:50:05.398 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 17:50:05.398 -07 000000610 INF: =================== Cycle #6, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 17:50:05.528 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-17 17:50:05.568 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:50:06.538 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:50:06.538 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 5. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=51, R2=59, Total=110. Warn if over 250 bubbles per interval.
17-03-17 17:50:06.708 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 6, FrontChillerTemperature: 3.939015,
17-03-17 17:50:11.538 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:50:11.538 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 5. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=51, R2=59, Total=110. Warn if over 250 bubbles per interval.
17-03-17 17:50:11.698 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:50:11.728 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:50:12.068 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 6, FrontChillerTemperature: 3.925358,
17-03-17 17:50:12.148 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:50:12.178 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:50:12.598 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:50:12.628 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:50:13.048 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:50:13.078 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:50:13.498 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:50:13.528 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:50:13.528 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-17 17:50:13.528 -07 000000610 INF: =================== Cycle #6, Pumping Reagent PR2 (3) ===================
17-03-17 17:50:13.658 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:50:13.688 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 17:50:13.688 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 17:50:13.818 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:50:13.848 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 17:50:13.848 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 17:50:13.848 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 17:50:13.978 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 17:50:14.008 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:50:14.438 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:50:14.468 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:50:14.468 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 17:50:14.468 -07 000000610 INF: =================== Cycle #6 ===================
17-03-17 17:50:15.688 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-17 17:50:15.688 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-17 17:50:15.688 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:50:15.708 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 17:50:15.708 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-17 17:50:15.708 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-17 17:50:15.918 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 17:50:15.938 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-17 17:50:15.938 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-17 17:50:15.988 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:50:16.008 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 17:50:16.008 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 17:50:16.108 -07 000000610 INF: =================== Cycle #6, Pumping Reagent IMT (1) ===================
17-03-17 17:50:16.108 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 17:50:16.108 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:50:16.138 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 17:50:16.138 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 17:50:16.138 -07 000000610 INF: =================== Cycle #6, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-17 17:50:16.268 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 17:50:16.308 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:50:16.538 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:50:16.538 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 5. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=51, R2=59, Total=110. Warn if over 250 bubbles per interval.
17-03-17 17:50:17.428 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 6, FrontChillerTemperature: 3.98264,
17-03-17 17:50:17.748 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:50:17.778 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:50:18.198 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:50:18.228 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:50:18.228 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 17:50:18.228 -07 000000610 INF: =================== Cycle #6, Pumping Reagent IMT (1) ===================
17-03-17 17:50:18.358 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:50:18.388 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 17:50:18.388 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 17:50:18.518 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:50:18.548 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 17:50:18.548 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 17:50:18.548 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 17:50:18.678 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 17:50:18.708 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:50:19.138 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:50:19.168 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:50:19.168 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 17:50:19.168 -07 000000610 INF: =================== Cycle #6 ===================
17-03-17 17:50:20.388 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 17:50:20.388 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 17:50:20.388 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:50:20.408 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 17:50:20.408 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-17 17:50:20.408 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 17:50:20.638 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 17:50:20.658 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-17 17:50:20.658 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-17 17:50:20.708 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:50:20.728 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 17:50:20.728 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 17:50:20.828 -07 000000610 INF: =================== Cycle #6, Pumping Reagent PR2 (3) ===================
17-03-17 17:50:20.828 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 17:50:20.828 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:50:20.858 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 17:50:20.858 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 17:50:20.858 -07 000000610 INF: =================== Cycle #6, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 17:50:20.988 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 17:50:21.028 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:50:21.538 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:50:21.538 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 5. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=51, R2=59, Total=110. Warn if over 250 bubbles per interval.
17-03-17 17:50:21.898 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:50:21.928 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:50:21.928 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 17:50:21.928 -07 000000610 INF: =================== Cycle #6, Pumping Reagent PR2 (3) ===================
17-03-17 17:50:22.058 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:50:22.088 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 17:50:22.088 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 17:50:22.218 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:50:22.248 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 17:50:22.248 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 17:50:22.248 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 17:50:22.378 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 17:50:22.408 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:50:22.788 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 6, FrontChillerTemperature: 3.960826,
17-03-17 17:50:22.838 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:50:22.868 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:50:22.868 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 17:50:22.868 -07 000000610 INF: =================== Cycle #6 ===================
17-03-17 17:50:22.868 -07 000000610 INF: =================== Cycle #6, Flow Cell Temp 65° ===================
17-03-17 17:50:22.868 -07 000000610 INF: =================== Cycle #6, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-17 17:50:22.868 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-17 17:50:22.868 -07 000000551 INF: FPGA: Recv TEC2TEMP 
17-03-17 17:50:22.878 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:50:22.878 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 17:50:22.878 -07 000000576 INF: FPGA: Recv TEC2EN 
17-03-17 17:50:22.888 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:50:22.888 -07 000000610 INF: =================== Cycle #6, Flow Cell Temp 65° ===================
17-03-17 17:50:22.888 -07 000000610 INF: =================== Cycle #6 ===================
17-03-17 17:50:22.888 -07 000000610 INF: WaitCommand(30000) start
17-03-17 17:50:26.538 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:50:26.538 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 5. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=51, R2=59, Total=110. Warn if over 250 bubbles per interval.
17-03-17 17:50:28.148 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 6, FrontChillerTemperature: 3.934904,
17-03-17 17:50:31.538 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:50:31.538 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 5. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=51, R2=59, Total=110. Warn if over 250 bubbles per interval.
17-03-17 17:50:33.508 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 6, FrontChillerTemperature: 3.96762,
17-03-17 17:50:36.538 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:50:36.538 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 5. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=51, R2=59, Total=110. Warn if over 250 bubbles per interval.
17-03-17 17:50:38.868 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 6, FrontChillerTemperature: 3.977204,
17-03-17 17:50:41.538 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:50:41.538 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 5. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=51, R2=59, Total=110. Warn if over 250 bubbles per interval.
17-03-17 17:50:44.228 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 6, FrontChillerTemperature: 3.966297,
17-03-17 17:50:46.538 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:50:46.538 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 5. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=51, R2=59, Total=110. Warn if over 250 bubbles per interval.
17-03-17 17:50:49.588 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 6, FrontChillerTemperature: 3.944485,
17-03-17 17:50:51.538 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:50:51.538 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 5. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=51, R2=59, Total=110. Warn if over 250 bubbles per interval.
17-03-17 17:50:52.898 -07 000000610 INF: WaitCommand(30000) end
17-03-17 17:50:52.898 -07 000000610 INF: =================== Cycle #6, Pumping Reagent PR2 (3) ===================
17-03-17 17:50:52.898 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-17 17:50:52.998 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:50:53.028 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 17:50:53.028 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 17:50:53.028 -07 000000610 INF: =================== Cycle #6, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 17:50:53.158 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-17 17:50:53.198 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:50:53.738 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:50:53.768 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:50:53.768 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-17 17:50:53.768 -07 000000610 INF: =================== Cycle #6, Pumping Reagent PR2 (3) ===================
17-03-17 17:50:53.898 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:50:53.928 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 17:50:53.928 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 17:50:54.058 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:50:54.088 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 17:50:54.088 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 17:50:54.088 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 17:50:54.218 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 17:50:54.248 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:50:54.678 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:50:54.708 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:50:54.708 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 17:50:54.708 -07 000000610 INF: =================== Cycle #6 ===================
17-03-17 17:50:54.708 -07 000000551 INF: WaitCommand(30000) start
17-03-17 17:50:54.708 -07 000000547 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 17:50:54.708 -07 000000547 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 17:50:54.948 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 6, FrontChillerTemperature: 3.933545,
17-03-17 17:50:55.928 -07 000000547 INF: AsyncDelayTimer waited 1216ms
17-03-17 17:50:55.928 -07 000000547 INF: LanePump: Xmit /1?\r
17-03-17 17:50:55.958 -07 000000547 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 17:50:55.958 -07 000000547 INF: LanePump: Current Position of Pump is: 1920
17-03-17 17:50:56.088 -07 000000547 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 17:50:56.128 -07 000000547 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:50:56.538 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:50:56.538 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 5. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=51, R2=59, Total=110. Warn if over 250 bubbles per interval.
17-03-17 17:50:58.468 -07 000000547 INF: LanePump: Xmit /1Q\r
17-03-17 17:50:58.498 -07 000000547 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:50:58.918 -07 000000547 INF: LanePump: Xmit /1Q\r
17-03-17 17:50:58.948 -07 000000547 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:50:58.948 -07 000000547 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-17 17:50:58.948 -07 000000547 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 17:50:58.948 -07 000000547 INF: ===================  ===================
17-03-17 17:51:00.308 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 6, FrontChillerTemperature: 3.925358,
17-03-17 17:51:01.538 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:51:01.538 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 5. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=51, R2=59, Total=110. Warn if over 250 bubbles per interval.
17-03-17 17:51:05.668 -07 000000431 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 6, FrontChillerTemperature: 3.910345,
17-03-17 17:51:06.538 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:51:06.538 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 5. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=51, R2=59, Total=110. Warn if over 250 bubbles per interval.
17-03-17 17:51:11.028 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 6, FrontChillerTemperature: 3.913061,
17-03-17 17:51:11.908 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:51:11.908 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 5. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=51, R2=59, Total=110. Warn if over 250 bubbles per interval.
17-03-17 17:51:16.538 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:51:16.538 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 5. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=51, R2=59, Total=110. Warn if over 250 bubbles per interval.
17-03-17 17:51:17.238 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 6, FrontChillerTemperature: 3.922606,
17-03-17 17:51:21.538 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:51:21.538 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 5. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=51, R2=59, Total=110. Warn if over 250 bubbles per interval.
17-03-17 17:51:22.608 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 6, FrontChillerTemperature: 3.915814,
17-03-17 17:51:24.718 -07 000000551 INF: WaitCommand(30000) end
17-03-17 17:51:24.718 -07 000000610 INF: =================== Cycle #6, Flow Cell Temp 22° ===================
17-03-17 17:51:24.718 -07 000000610 INF: =================== Cycle #6, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-17 17:51:24.718 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-17 17:51:24.718 -07 000000459 INF: FPGA: Recv TEC2TEMP 
17-03-17 17:51:24.728 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:51:24.728 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 17:51:24.728 -07 000000433 INF: FPGA: Recv TEC2EN 
17-03-17 17:51:24.738 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:51:24.738 -07 000000610 INF: =================== Cycle #6, Flow Cell Temp 22° ===================
17-03-17 17:51:24.738 -07 000000610 INF: =================== Cycle #6 ===================
17-03-17 17:51:24.738 -07 000000610 INF: =================== Cycle #6, Pumping Reagent PR2 (3) ===================
17-03-17 17:51:24.738 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 17:51:24.738 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:51:24.778 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 17:51:24.778 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 17:51:24.778 -07 000000610 INF: =================== Cycle #6, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 17:51:24.908 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 17:51:24.948 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:51:26.538 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:51:26.538 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 5. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=51, R2=59, Total=110. Warn if over 250 bubbles per interval.
17-03-17 17:51:27.978 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 6, FrontChillerTemperature: 3.933545,
17-03-17 17:51:28.078 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:51:28.738 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:51:29.158 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:51:29.188 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:51:29.188 -07 000000610 INF: LanePump: Waited 4239 ms for pump motion to complete
17-03-17 17:51:29.188 -07 000000610 INF: =================== Cycle #6, Pumping Reagent PR2 (3) ===================
17-03-17 17:51:29.318 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:51:29.348 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 17:51:29.348 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 17:51:29.478 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:51:29.508 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 17:51:29.508 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 17:51:29.508 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 17:51:29.638 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 17:51:29.668 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:51:30.098 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:51:30.128 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:51:30.128 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 17:51:30.128 -07 000000610 INF: =================== Cycle #6 ===================
17-03-17 17:51:31.348 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-17 17:51:31.348 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-17 17:51:31.348 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:51:31.368 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 17:51:31.368 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-17 17:51:31.368 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-17 17:51:31.518 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 17:51:31.538 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 17:51:31.538 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 17:51:31.538 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:51:31.538 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 5. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=51, R2=59, Total=110. Warn if over 250 bubbles per interval.
17-03-17 17:51:31.588 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:51:31.608 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 17:51:31.608 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 17:51:31.708 -07 000000610 INF: =================== Cycle #6, Pumping Reagent USM (2) ===================
17-03-17 17:51:31.708 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 17:51:31.708 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:51:31.738 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 17:51:31.738 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 17:51:31.738 -07 000000610 INF: =================== Cycle #6, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-17 17:51:31.868 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 17:51:31.908 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:51:33.348 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:51:33.378 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:51:33.798 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:51:33.828 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:51:33.828 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 17:51:33.828 -07 000000610 INF: =================== Cycle #6, Pumping Reagent USM (2) ===================
17-03-17 17:51:33.958 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:51:33.988 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 17:51:33.988 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 17:51:34.068 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 6, FrontChillerTemperature: 3.975845,
17-03-17 17:51:34.118 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:51:34.148 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 17:51:34.148 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 17:51:34.148 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 17:51:34.278 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 17:51:34.308 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:51:34.738 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:51:34.768 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:51:34.768 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 17:51:34.768 -07 000000610 INF: =================== Cycle #6 ===================
17-03-17 17:51:35.988 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-17 17:51:35.988 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 17:51:35.988 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:51:36.008 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 17:51:36.008 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-17 17:51:36.008 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 17:51:36.158 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 17:51:36.178 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 17:51:36.178 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 17:51:36.228 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:51:36.248 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 17:51:36.248 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 17:51:36.348 -07 000000610 INF: =================== Cycle #6, Pumping Reagent PR2 (3) ===================
17-03-17 17:51:36.348 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 17:51:36.348 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:51:36.378 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 17:51:36.378 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 17:51:36.378 -07 000000610 INF: =================== Cycle #6, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 17:51:36.508 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 17:51:36.538 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 1
17-03-17 17:51:36.538 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 5. Bubbles during last 5000 ms interval: R1=1, R2=0, Total=1. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=52, R2=59, Total=111. Warn if over 250 bubbles per interval.
17-03-17 17:51:36.548 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:51:37.418 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:51:37.448 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:51:37.448 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 17:51:37.448 -07 000000610 INF: =================== Cycle #6, Pumping Reagent PR2 (3) ===================
17-03-17 17:51:37.578 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:51:37.608 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 17:51:37.608 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 17:51:37.738 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 17:51:37.768 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 17:51:37.768 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 17:51:37.768 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 17:51:37.898 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 17:51:37.928 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:51:38.358 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 17:51:38.388 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:51:38.388 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 17:51:38.388 -07 000000610 INF: =================== Cycle #6 ===================
17-03-17 17:51:38.388 -07 000000551 INF: WaitCommand(10000) start
17-03-17 17:51:38.388 -07 000000459 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 17:51:38.388 -07 000000459 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 17:51:39.428 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 6, FrontChillerTemperature: 3.932187,
17-03-17 17:51:39.608 -07 000000459 INF: AsyncDelayTimer waited 1216ms
17-03-17 17:51:39.608 -07 000000459 INF: LanePump: Xmit /1?\r
17-03-17 17:51:39.638 -07 000000459 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 17:51:39.638 -07 000000459 INF: LanePump: Current Position of Pump is: 1110
17-03-17 17:51:39.768 -07 000000459 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 17:51:39.808 -07 000000459 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:51:41.338 -07 000000459 INF: LanePump: Xmit /1Q\r
17-03-17 17:51:41.368 -07 000000459 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 17:51:41.538 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 3 R1 2
17-03-17 17:51:41.538 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 5. Bubbles during last 5000 ms interval: R1=2, R2=3, Total=5. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=54, R2=62, Total=116. Warn if over 250 bubbles per interval.
17-03-17 17:51:41.788 -07 000000459 INF: LanePump: Xmit /1Q\r
17-03-17 17:51:41.818 -07 000000459 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 17:51:41.818 -07 000000459 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 17:51:41.818 -07 000000459 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 17:51:41.818 -07 000000459 INF: ===================  ===================
17-03-17 17:51:45.328 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 6, FrontChillerTemperature: 3.943091,
17-03-17 17:51:46.538 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:51:46.538 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 5. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=54, R2=62, Total=116. Warn if over 250 bubbles per interval.
17-03-17 17:51:48.398 -07 000000551 INF: WaitCommand(10000) end
17-03-17 17:51:48.398 -07 000000610 INF: =================== Cycle #6, Imaging ===================
17-03-17 17:51:48.398 -07 000000610 INF: Imaging Cycle 6: ScanTilesCommand Cycle 6 time start.
17-03-17 17:51:48.398 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-17 17:51:48.398 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:51:48.428 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 17:51:48.428 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-17 17:51:48.428 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-17 17:51:48.728 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 17:51:48.748 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 17:51:48.748 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 17:51:48.798 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 17:51:48.818 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 17:51:48.818 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:51:48.818 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:51:48.818 -07 000000547 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-17 17:51:48.818 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:51:48.818 -07 000000547 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-17 17:51:48.828 -07 000000459 INF: FPGA: Recv EXLED1ON 
17-03-17 17:51:48.828 -07 000000547 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 17:51:48.828 -07 000000547 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-17 17:51:48.828 -07 000000433 INF: FPGA: Recv EXLED1ADCR 23163
17-03-17 17:51:48.838 -07 000000547 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:51:48.838 -07 000000547 INF: RedLED: Using Red data: Photodiode ADC 23163 --> 7.4 mW (old method), or 205.3 mW (new method). Difference = 197.9 mW
17-03-17 17:51:48.838 -07 000000547 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-17 17:51:48.838 -07 000000626 INF: FPGA: Recv EXLED1OFF 
17-03-17 17:51:48.848 -07 000000547 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:51:48.848 -07 000000547 INF: RedLED: LED was on for 19 ms
17-03-17 17:51:48.848 -07 000000547 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 22 ms.
17-03-17 17:51:48.848 -07 000000547 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-17 17:51:48.848 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:51:48.848 -07 000000547 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-17 17:51:48.848 -07 000000551 INF: FPGA: Recv EXLED2ON 
17-03-17 17:51:48.858 -07 000000547 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:51:48.858 -07 000000547 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 17:51:48.858 -07 000000433 INF: FPGA: Recv EXLED1ADCR 2104
17-03-17 17:51:48.868 -07 000000547 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:51:48.868 -07 000000547 INF: GreenLED: Using Green data: Photodiode ADC 2104 --> 0.9 mW (old method), or 182.8 mW (new method). Difference = 181.9 mW
17-03-17 17:51:48.868 -07 000000547 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-17 17:51:48.868 -07 000000626 INF: FPGA: Recv EXLED2OFF 
17-03-17 17:51:48.878 -07 000000547 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:51:48.878 -07 000000547 INF: GreenLED: LED was on for 19 ms
17-03-17 17:51:48.878 -07 000000547 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 26 ms.
17-03-17 17:51:48.878 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 17:51:48.878 -07 000000547 INF: FPGA: Recv EMCUR 
17-03-17 17:51:48.888 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:51:48.888 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-17 17:51:49.388 -07 000000576 INF: FPGA: Recv EMOUT
17-03-17 17:51:49.388 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 17:51:49.388 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-17 17:51:49.388 -07 000000551 INF: FPGA: Recv EMCUR 
17-03-17 17:51:49.398 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:51:49.398 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:51:49.398 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.38134765625, Z-Position -0.126901745244298. ------
17-03-17 17:51:49.398 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:51:49.398 -07 000000459 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17873 mm
17-03-17 17:51:49.398 -07 000000459 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:51:49.398 -07 000000547 INF: Z Motor: Entering MoveAbsStepped (DAC = 39043, sync = True, waitForSettling = False)
17-03-17 17:51:49.398 -07 000000547 INF: Z Motor: Moving to -0.178727 mm, started at -0.126902 mm, distance = -51.83 um
17-03-17 17:51:49.398 -07 000000551 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 17:51:49.398 -07 000000551 INF: Y Motor: Moving to 59.9126 mm, started at 75.3813 mm, delta = -15.4687 mm
17-03-17 17:51:49.398 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:51:49.408 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:51:49.408 -07 000000547 INF: FPGA: Xmit ZDACW 39043\n [Z Motor]
17-03-17 17:51:49.408 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 17:51:49.418 -07 000000547 INF: FPGA: 'ZDACW 39043' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 17:51:49.418 -07 000000433 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:51:49.428 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:51:49.428 -07 000000626 INF: FPGA: Recv YRDPOS 154381
17-03-17 17:51:49.438 -07 000000547 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:51:49.438 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-17 17:51:49.438 -07 000000551 INF: Y Motor: Encoder = 154381 = motor step 120610.2 = 75.3813 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:51:49.438 -07 000000551 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-17 17:51:49.438 -07 000000551 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 17:51:49.438 -07 000000626 INF: FPGA: Recv ZDACR 39043
17-03-17 17:51:49.448 -07 000000547 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:51:49.448 -07 000000547 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-17 17:51:49.448 -07 000000551 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 17:51:49.618 -07 000000431 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:51:49.618 -07 000000433 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 17:51:50.698 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 6, FrontChillerTemperature: 3.926717,
17-03-17 17:51:51.128 -07 000000429 INF: FPGA: Recv YMVTO 122702 24775
17-03-17 17:51:51.128 -07 000000551 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1677 ms to get response, and 1697 ms overall
17-03-17 17:51:51.128 -07 000000551 INF: Y Motor: Position error before settling = 1 encoder counts (0.000 mm)
17-03-17 17:51:51.128 -07 000000551 INF: Y Motor: To move from 75.381 to 59.913 (-15.469 mm) should take 24750 steps, but required 24775 steps (15.484 mm). Slippage = 0.016 mm (0.00%).
17-03-17 17:51:51.128 -07 000000551 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1697 ms, distance = 15.469 mm, average velocity = 9.115 mm/sec
17-03-17 17:51:51.538 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:51:51.538 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 5. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=54, R2=62, Total=116. Warn if over 250 bubbles per interval.
17-03-17 17:51:53.978 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:51:53.978 -07 000000541 INF: FPGA: Recv YRDPOS 122699
17-03-17 17:51:53.988 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:51:53.988 -07 000000551 INF: Y Motor: Encoder = 122699 = motor step 95858.6 = 59.9116 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:51:54.008 -07 000000551 INF: Y Motor: After move to 59.912609, error = -0.000988, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:51:54.008 -07 000000551 INF: Y Motor: Position error after settling = -2 encoder counts (-0.001 mm), Delta during settling = -3 counts (-0.001 mm)
17-03-17 17:51:54.008 -07 000000551 INF: Y Motor: Moved to 59.9116 after 4602 ms
17-03-17 17:51:54.008 -07 000000459 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178727 mm (DAC = 39043)
17-03-17 17:51:54.008 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:51:54.008 -07 000000541 INF: FPGA: Recv ZSGSRD 37115
17-03-17 17:51:54.018 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:51:54.018 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:51:54.018 -07 000000429 INF: FPGA: Recv ZSGSRD 37114
17-03-17 17:51:54.028 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:51:54.028 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:51:54.028 -07 000000551 INF: FPGA: Recv ZSGSRD 37107
17-03-17 17:51:54.038 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:51:54.038 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:51:54.038 -07 000000541 INF: FPGA: Recv ZSGSRD 37111
17-03-17 17:51:54.048 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:51:54.048 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:51:54.048 -07 000000626 INF: FPGA: Recv ZSGSRD 37111
17-03-17 17:51:54.058 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:51:54.058 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:51:54.058 -07 000000576 INF: FPGA: Recv ZSGSRD 37109
17-03-17 17:51:54.068 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:51:54.068 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:51:54.068 -07 000000431 INF: FPGA: Recv ZSGSRD 37115
17-03-17 17:51:54.078 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:51:54.078 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:51:54.078 -07 000000541 INF: FPGA: Recv ZSGSRD 37108
17-03-17 17:51:54.088 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:51:54.088 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:51:54.088 -07 000000431 INF: FPGA: Recv ZSGSRD 37111
17-03-17 17:51:54.098 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:51:54.098 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:51:54.098 -07 000000431 INF: FPGA: Recv ZSGSRD 37111
17-03-17 17:51:54.108 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:51:54.108 -07 000000459 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:51:54.108 -07 000000551 INF: FPGA: Recv ZPIEZORD 33365
17-03-17 17:51:54.118 -07 000000459 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:51:54.118 -07 000000459 INF: Z Motor: Piezo is near 51.3 V (nominally 0 to 100 V), expect near 59.6 V, since DAC is at 5.958 V. Piezo Error = -8.3 V.
17-03-17 17:51:54.118 -07 000000459 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.7 um, Read 10 ADC samples: Avg = 37111 (-177.8 uncal um), Error = 0.9 uncal um, Median = 37111 (-177.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 37107 (-177.8 uncal um), Max = 37115 (-177.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:51:54.118 -07 000000459 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37111, posNoise = 4, negNoise = 4
17-03-17 17:51:54.118 -07 000000459 INF: Z Motor: After move to -0.178727, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:51:54.118 -07 000000459 INF: Z Motor: Settle wait time = 4606 ms, measure time = 106 ms (allowed 150 ms), total time = 4712 ms
17-03-17 17:51:54.118 -07 000000459 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 17:51:54.168 -07 000000459 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4764 ms
17-03-17 17:51:54.168 -07 000000459 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:51:54.168 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:51:54.168 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:51:54.168 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:51:54.168 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:51:54.168 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:51:54.168 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:51:54.178 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:51:54.178 -07 000000433 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 17:51:54.198 -07 000000433 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 22 ms.
17-03-17 17:51:54.198 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:51:54.198 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:51:54.198 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:51:54.208 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 17:51:54.208 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 32 ms.
17-03-17 17:51:54.208 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:51:54.258 -07 000000551 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:51:54.458 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:51:54.458 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:51:54.458 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:51:54.458 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1175260944, 0x0, 559484976) start.
17-03-17 17:51:54.498 -07 000000486 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:51:54.498 -07 000000551 INF: FPGA: Recv CAMSNAP
17-03-17 17:51:54.498 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 3 ms to send, 285 ms to get response, and 290 ms overall
17-03-17 17:51:54.588 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1175260944, 0x0, 559484976) end. Duration was 128 ms.
17-03-17 17:51:54.588 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:51:54.588 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 17:51:54.588 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 17:51:54.598 -07 000000433 INF: Image SNR check: start
17-03-17 17:51:54.598 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:51:54.598 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:51:54.608 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:51:54.608 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:51:54.608 -07 000000433 INF: Image SNR check: pass  [peak (Max-Min)=69.21]
17-03-17 17:51:54.608 -07 000000433 INF: Autofocus start
17-03-17 17:51:54.608 -07 000000433 INF: MeasureProfile start
17-03-17 17:51:54.628 -07 000000433 INF: MeasureProfile done
17-03-17 17:51:54.628 -07 000000433 INF: X=64  Z correction [um]=0.2557664
17-03-17 17:51:54.628 -07 000000433 INF: Autofocus finished
17-03-17 17:51:54.808 -07 000000486 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:51:54.808 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:51:54.808 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91162109375, Z-position -0.178732288804026. ----------
17-03-17 17:51:54.808 -07 000000610 INF: Cycle	6	Tile	1	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:51:54.808 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37611, sync = True, waitForSettling = True)
17-03-17 17:51:54.818 -07 000000610 INF: Z Motor: Moving to -0.172172 mm, started at -0.178732 mm, distance = 6.56 um
17-03-17 17:51:54.818 -07 000000610 INF: FPGA: Xmit ZDACW 37611\n [Z Motor]
17-03-17 17:51:54.818 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 17:51:54.828 -07 000000610 INF: FPGA: 'ZDACW 37611' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:51:54.828 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:51:54.828 -07 000000541 INF: FPGA: Recv ZDACR 37611
17-03-17 17:51:54.838 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:51:54.838 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:51:54.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:51:54.988 -07 000000576 INF: FPGA: Recv ZSGSRD 36096
17-03-17 17:51:54.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:51:54.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:51:54.998 -07 000000576 INF: FPGA: Recv ZSGSRD 36092
17-03-17 17:51:55.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:51:55.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:51:55.008 -07 000000486 INF: FPGA: Recv ZSGSRD 36091
17-03-17 17:51:55.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:51:55.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:51:55.018 -07 000000486 INF: FPGA: Recv ZSGSRD 36087
17-03-17 17:51:55.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:51:55.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:51:55.028 -07 000000626 INF: FPGA: Recv ZSGSRD 36092
17-03-17 17:51:55.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:51:55.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:51:55.038 -07 000000486 INF: FPGA: Recv ZSGSRD 36094
17-03-17 17:51:55.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:51:55.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:51:55.048 -07 000000486 INF: FPGA: Recv ZSGSRD 36088
17-03-17 17:51:55.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:51:55.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:51:55.058 -07 000000486 INF: FPGA: Recv ZSGSRD 36091
17-03-17 17:51:55.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:51:55.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:51:55.068 -07 000000486 INF: FPGA: Recv ZSGSRD 36097
17-03-17 17:51:55.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:51:55.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:51:55.078 -07 000000486 INF: FPGA: Recv ZSGSRD 36094
17-03-17 17:51:55.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:51:55.088 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:51:55.088 -07 000000626 INF: FPGA: Recv ZPIEZORD 32022
17-03-17 17:51:55.098 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:51:55.098 -07 000000610 INF: Z Motor: Piezo is near 48.4 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.739 V. Piezo Error = -9.0 V.
17-03-17 17:51:55.098 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.2 um, Read 10 ADC samples: Avg = 36092 (-171.3 uncal um), Error = 0.9 uncal um, Median = 36092 (-171.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36087 (-171.3 uncal um), Max = 36097 (-171.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:51:55.098 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36092, posNoise = 5, negNoise = 5
17-03-17 17:51:55.098 -07 000000610 INF: Z Motor: After move to -0.172172, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:51:55.098 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 17:51:55.098 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:51:55.098 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:51:55.098 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:51:55.098 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:51:55.098 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:51:55.098 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:51:55.098 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:51:55.098 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:51:55.098 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:51:55.098 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:51:55.098 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:51:55.098 -07 000000459 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 17:51:55.098 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:51:55.098 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:51:55.118 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 17:51:55.118 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 17:51:55.118 -07 000000459 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-17 17:51:55.118 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:51:55.128 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:51:55.128 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:51:55.138 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 17:51:55.138 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 39 ms.
17-03-17 17:51:55.138 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37788 150\n [Camera]
17-03-17 17:51:55.338 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:51:55.728 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:51:55.728 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:51:55.728 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:51:55.728 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:51:55.728 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2187315360, 0x0, 391868352) start.
17-03-17 17:51:55.728 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:51:55.728 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:51:55.738 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:51:55.738 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:51:55.738 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2239612688, 0x0, 418435064) start.
17-03-17 17:51:55.918 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37788 775
17-03-17 17:51:56.058 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 6, FrontChillerTemperature: 3.925358,
17-03-17 17:51:56.068 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:51:56.118 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2239612688, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 17:51:56.118 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 17:51:56.118 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:51:56.128 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2187315360, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 17:51:56.128 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 17:51:56.128 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:51:56.128 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-17 17:51:56.138 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 17:51:56.138 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 17:51:56.138 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 17:51:56.258 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:51:56.258 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:51:56.258 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:51:56.268 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:51:56.268 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2298580584, 0x0, 391868352) start.
17-03-17 17:51:56.268 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:51:56.268 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:51:56.268 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:51:56.268 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:51:56.268 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2350877912, 0x0, 418435064) start.
17-03-17 17:51:56.448 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:51:56.448 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:51:56.448 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37788 150' command took 2 ms to send, 1309 ms to get response, and 1312 ms overall
17-03-17 17:51:56.458 -07 000000610 INF: Skipping AutoFocus in Tile 2: adopting Best-Z from the cache: -0.172472
17-03-17 17:51:56.458 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17247 mm
17-03-17 17:51:56.458 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:51:56.458 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 17:51:56.458 -07 000000459 INF: Y Motor: Moving to 60.7426 mm, started at 59.9116 mm, delta = 0.8310 mm
17-03-17 17:51:56.458 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:51:56.458 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 37677, sync = True, waitForSettling = False)
17-03-17 17:51:56.458 -07 000000576 INF: Z Motor: Moving to -0.172474 mm, started at -0.172186 mm, distance = -0.29 um
17-03-17 17:51:56.458 -07 000000486 INF: FPGA: Recv YRDPOS 122699
17-03-17 17:51:56.468 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:51:56.468 -07 000000459 INF: Y Motor: Encoder = 122699 = motor step 95858.6 = 59.9116 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:51:56.468 -07 000000576 INF: FPGA: Xmit ZDACW 37677\n [Z Motor]
17-03-17 17:51:56.468 -07 000000459 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:51:56.468 -07 000000459 INF: Y Motor: Moving 1330 steps1
17-03-17 17:51:56.468 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 17:51:56.478 -07 000000576 INF: FPGA: 'ZDACW 37677' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 17:51:56.478 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:51:56.478 -07 000000486 INF: FPGA: Recv ZDACR 37677
17-03-17 17:51:56.488 -07 000000459 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:51:56.488 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:51:56.488 -07 000000576 INF: Z Motor: MoveAbsStepped took 26 ms (did NOT wait for settling yet))
17-03-17 17:51:56.538 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:51:56.538 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 5. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=54, R2=62, Total=116. Warn if over 250 bubbles per interval.
17-03-17 17:51:56.668 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2350877912, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 17:51:56.668 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 17:51:56.668 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:51:56.668 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2298580584, 0x0, 391868352) end. Duration was 405 ms.
17-03-17 17:51:56.668 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 17:51:56.668 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:51:56.688 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 16 ms.
17-03-17 17:51:56.688 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 15 ms.
17-03-17 17:51:56.688 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 425 ms.
17-03-17 17:51:56.698 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 428 ms.
17-03-17 17:51:56.858 -07 000000547 INF: FPGA: Recv YMVTILE
17-03-17 17:51:56.858 -07 000000459 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 17:51:56.888 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:51:56.888 -07 000000433 INF: FPGA: Recv YRDPOS 124382
17-03-17 17:51:56.898 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:51:56.898 -07 000000459 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:51:56.898 -07 000000459 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 17:51:56.898 -07 000000459 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.831 mm, average velocity = 2.093 mm/sec
17-03-17 17:51:57.848 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:51:57.848 -07 000000431 INF: FPGA: Recv YRDPOS 124382
17-03-17 17:51:57.858 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:51:57.858 -07 000000459 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:51:57.868 -07 000000459 INF: Y Motor: After move to 60.742607, error = -0.009209, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:51:57.868 -07 000000459 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:51:57.868 -07 000000459 INF: Y Motor: Moved to 60.7334 after 1415 ms (table move)
17-03-17 17:51:57.878 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172474 mm (DAC = 37677)
17-03-17 17:51:57.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:51:57.878 -07 000000576 INF: FPGA: Recv ZSGSRD 36143
17-03-17 17:51:57.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:51:57.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:51:57.888 -07 000000547 INF: FPGA: Recv ZSGSRD 36141
17-03-17 17:51:57.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:51:57.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:51:57.898 -07 000000576 INF: FPGA: Recv ZSGSRD 36132
17-03-17 17:51:57.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:51:57.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:51:57.908 -07 000000431 INF: FPGA: Recv ZSGSRD 36135
17-03-17 17:51:57.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:51:57.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:51:57.918 -07 000000626 INF: FPGA: Recv ZSGSRD 36134
17-03-17 17:51:57.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:51:57.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:51:57.928 -07 000000429 INF: FPGA: Recv ZSGSRD 36142
17-03-17 17:51:57.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:51:57.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:51:57.938 -07 000000576 INF: FPGA: Recv ZSGSRD 36150
17-03-17 17:51:57.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:51:57.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:51:57.948 -07 000000547 INF: FPGA: Recv ZSGSRD 36135
17-03-17 17:51:57.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:51:57.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:51:57.958 -07 000000626 INF: FPGA: Recv ZSGSRD 36137
17-03-17 17:51:57.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:51:57.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:51:57.968 -07 000000486 INF: FPGA: Recv ZSGSRD 36138
17-03-17 17:51:57.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:51:57.978 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:51:57.978 -07 000000626 INF: FPGA: Recv ZPIEZORD 32094
17-03-17 17:51:57.988 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:51:57.988 -07 000000610 INF: Z Motor: Piezo is near 48.6 V (nominally 0 to 100 V), expect near 57.5 V, since DAC is at 5.749 V. Piezo Error = -8.9 V.
17-03-17 17:51:57.988 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.5 um, Read 10 ADC samples: Avg = 36139 (-171.6 uncal um), Error = 0.9 uncal um, Median = 36138 (-171.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36132 (-171.6 uncal um), Max = 36150 (-171.7 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 17:51:57.988 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36139, posNoise = 11, negNoise = 7
17-03-17 17:51:57.988 -07 000000610 INF: Z Motor: After move to -0.172474, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:51:57.988 -07 000000610 INF: Z Motor: Settle wait time = 1417 ms, measure time = 109 ms (allowed 150 ms), total time = 1526 ms
17-03-17 17:51:57.988 -07 000000610 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 17:51:58.038 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1578 ms
17-03-17 17:51:58.038 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:51:58.038 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.7333984375, Z-position -0.172487954602234. ----------
17-03-17 17:51:58.038 -07 000000610 INF: Cycle	6	Tile	2	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:51:58.038 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37500, sync = True, waitForSettling = True)
17-03-17 17:51:58.038 -07 000000610 INF: Z Motor: Moving to -0.171664 mm, started at -0.172488 mm, distance = 0.82 um
17-03-17 17:51:58.038 -07 000000610 INF: FPGA: Xmit ZDACW 37500\n [Z Motor]
17-03-17 17:51:58.038 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 17:51:58.048 -07 000000610 INF: FPGA: 'ZDACW 37500' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 17:51:58.048 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:51:58.048 -07 000000431 INF: FPGA: Recv ZDACR 37500
17-03-17 17:51:58.058 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:51:58.058 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:51:58.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:51:58.208 -07 000000459 INF: FPGA: Recv ZSGSRD 36012
17-03-17 17:51:58.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:51:58.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:51:58.218 -07 000000433 INF: FPGA: Recv ZSGSRD 36012
17-03-17 17:51:58.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:51:58.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:51:58.228 -07 000000459 INF: FPGA: Recv ZSGSRD 36006
17-03-17 17:51:58.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:51:58.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:51:58.238 -07 000000433 INF: FPGA: Recv ZSGSRD 36017
17-03-17 17:51:58.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:51:58.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:51:58.248 -07 000000431 INF: FPGA: Recv ZSGSRD 36015
17-03-17 17:51:58.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:51:58.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:51:58.258 -07 000000626 INF: FPGA: Recv ZSGSRD 36012
17-03-17 17:51:58.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:51:58.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:51:58.268 -07 000000486 INF: FPGA: Recv ZSGSRD 36016
17-03-17 17:51:58.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:51:58.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:51:58.278 -07 000000433 INF: FPGA: Recv ZSGSRD 36012
17-03-17 17:51:58.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:51:58.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:51:58.288 -07 000000576 INF: FPGA: Recv ZSGSRD 36012
17-03-17 17:51:58.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:51:58.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:51:58.298 -07 000000626 INF: FPGA: Recv ZSGSRD 36010
17-03-17 17:51:58.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:51:58.308 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:51:58.308 -07 000000576 INF: FPGA: Recv ZPIEZORD 31910
17-03-17 17:51:58.318 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:51:58.318 -07 000000610 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.722 V. Piezo Error = -9.1 V.
17-03-17 17:51:58.318 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.7 um, Read 10 ADC samples: Avg = 36012 (-170.8 uncal um), Error = 0.9 uncal um, Median = 36012 (-170.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36006 (-170.8 uncal um), Max = 36017 (-170.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:51:58.318 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36012, posNoise = 5, negNoise = 6
17-03-17 17:51:58.318 -07 000000610 INF: Z Motor: After move to -0.171664, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:51:58.318 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 17:51:58.318 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:51:58.318 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:51:58.318 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:51:58.318 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:51:58.318 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:51:58.318 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:51:58.318 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:51:58.318 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:51:58.318 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:51:58.318 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:51:58.318 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:51:58.318 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:51:58.328 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:51:58.328 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 17:51:58.328 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:51:58.328 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:51:58.338 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 17:51:58.338 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 17:51:58.338 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 17:51:58.338 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 17:51:58.348 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37677 150\n [Camera]
17-03-17 17:51:58.548 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:51:58.938 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:51:58.938 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:51:58.938 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:51:58.938 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:51:58.938 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 17:51:58.938 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:51:58.938 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:51:58.938 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:51:58.938 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:51:58.938 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 17:51:59.128 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37677 775
17-03-17 17:51:59.278 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:51:59.318 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 17:51:59.318 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 17:51:59.318 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:51:59.328 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:51:59.328 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 17:51:59.328 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 17:51:59.328 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:51:59.328 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 17:51:59.338 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:51:59.338 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 17:51:59.468 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:51:59.468 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:51:59.468 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:51:59.468 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:51:59.468 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-17 17:51:59.468 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:51:59.468 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:51:59.468 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:51:59.468 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:51:59.468 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 17:51:59.658 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:51:59.658 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:51:59.658 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37677 150' command took 2 ms to send, 1303 ms to get response, and 1312 ms overall
17-03-17 17:51:59.658 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:51:59.658 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.7333984375, Z-Position -0.171672079660231. ------
17-03-17 17:51:59.658 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:51:59.658 -07 000000429 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17826 mm
17-03-17 17:51:59.658 -07 000000429 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:51:59.868 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 407 ms.
17-03-17 17:51:59.868 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 17:51:59.878 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:51:59.878 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 406 ms.
17-03-17 17:51:59.878 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 17:51:59.878 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:51:59.878 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:51:59.878 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 17:51:59.878 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:51:59.888 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-17 17:51:59.888 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:51:59.888 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 224 ms to get response, and 227 ms overall
17-03-17 17:51:59.888 -07 000000459 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:51:59.888 -07 000000486 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 17:51:59.888 -07 000000486 INF: Y Motor: Moving to 61.5726 mm, started at 60.7334 mm, delta = 0.8392 mm
17-03-17 17:51:59.898 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:51:59.898 -07 000000433 INF: Z Motor: Entering MoveAbsStepped (DAC = 38942, sync = True, waitForSettling = False)
17-03-17 17:51:59.898 -07 000000433 INF: Z Motor: Moving to -0.178265 mm, started at -0.171672 mm, distance = -6.59 um
17-03-17 17:51:59.908 -07 000000433 INF: FPGA: Xmit ZDACW 38942\n [Z Motor]
17-03-17 17:52:00.758 -07 000000541 INF: FPGA: Recv YRDPOS 124383
17-03-17 17:52:00.758 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 17:52:00.758 -07 000000541 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:52:00.758 -07 000000433 INF: FPGA: 'ZDACW 38942' command took 0 ms to send, 840 ms to get response, and 857 ms overall
17-03-17 17:52:00.758 -07 000000459 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 861 ms to get response, and 864 ms overall
17-03-17 17:52:00.758 -07 000000433 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:52:00.758 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 850 ms to get response, and 863 ms overall
17-03-17 17:52:00.758 -07 000000486 INF: Y Motor: Encoder = 124383 = motor step 97174.2 = 60.7339 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:52:00.758 -07 000000541 INF: FPGA: Recv ZDACR 38942
17-03-17 17:52:00.758 -07 000000486 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:52:00.758 -07 000000486 INF: Y Motor: Moving 1342 steps-19
17-03-17 17:52:00.768 -07 000000433 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:52:00.768 -07 000000433 INF: Z Motor: MoveAbsStepped took 866 ms (did NOT wait for settling yet))
17-03-17 17:52:00.768 -07 000000486 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:52:01.138 -07 000000433 INF: FPGA: Recv YMVTILE
17-03-17 17:52:01.138 -07 000000486 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 381 ms overall
17-03-17 17:52:01.168 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:52:01.178 -07 000000433 INF: FPGA: Recv YRDPOS 126084
17-03-17 17:52:01.188 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:52:01.188 -07 000000486 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:52:01.188 -07 000000486 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 17:52:01.188 -07 000000486 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 381 ms, distance = 0.839 mm, average velocity = 2.203 mm/sec
17-03-17 17:52:01.428 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 6, FrontChillerTemperature: 3.929434,
17-03-17 17:52:01.538 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:52:01.538 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 5. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=54, R2=62, Total=116. Warn if over 250 bubbles per interval.
17-03-17 17:52:02.138 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:52:02.138 -07 000000576 INF: FPGA: Recv YRDPOS 126084
17-03-17 17:52:02.148 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:02.148 -07 000000486 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:52:02.168 -07 000000486 INF: Y Motor: After move to 61.572609, error = -0.008156, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:52:02.168 -07 000000486 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:52:02.168 -07 000000486 INF: Y Motor: Moved to 61.5645 after 2273 ms (table move)
17-03-17 17:52:02.168 -07 000000429 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178265 mm (DAC = 38942)
17-03-17 17:52:02.168 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:02.168 -07 000000551 INF: FPGA: Recv ZSGSRD 37036
17-03-17 17:52:02.178 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:52:02.178 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:02.178 -07 000000486 INF: FPGA: Recv ZSGSRD 37035
17-03-17 17:52:02.188 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:02.188 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:02.188 -07 000000626 INF: FPGA: Recv ZSGSRD 37028
17-03-17 17:52:02.198 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:02.198 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:02.198 -07 000000486 INF: FPGA: Recv ZSGSRD 37033
17-03-17 17:52:02.208 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:02.208 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:02.208 -07 000000626 INF: FPGA: Recv ZSGSRD 37042
17-03-17 17:52:02.218 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:02.218 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:02.218 -07 000000459 INF: FPGA: Recv ZSGSRD 37037
17-03-17 17:52:02.228 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:02.228 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:02.228 -07 000000486 INF: FPGA: Recv ZSGSRD 37045
17-03-17 17:52:02.238 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:02.238 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:02.238 -07 000000547 INF: FPGA: Recv ZSGSRD 37032
17-03-17 17:52:02.248 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:02.248 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:02.248 -07 000000486 INF: FPGA: Recv ZSGSRD 37039
17-03-17 17:52:02.258 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:02.258 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:02.258 -07 000000547 INF: FPGA: Recv ZSGSRD 37034
17-03-17 17:52:02.268 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:02.268 -07 000000429 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:52:02.268 -07 000000626 INF: FPGA: Recv ZPIEZORD 33278
17-03-17 17:52:02.278 -07 000000429 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:02.278 -07 000000429 INF: Z Motor: Piezo is near 51.1 V (nominally 0 to 100 V), expect near 59.4 V, since DAC is at 5.942 V. Piezo Error = -8.3 V.
17-03-17 17:52:02.278 -07 000000429 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.3 um, Read 10 ADC samples: Avg = 37036 (-177.4 uncal um), Error = 0.9 uncal um, Median = 37036 (-177.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 37028 (-177.3 uncal um), Max = 37045 (-177.4 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 17:52:02.278 -07 000000429 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37036, posNoise = 9, negNoise = 8
17-03-17 17:52:02.278 -07 000000429 INF: Z Motor: After move to -0.178265, error = 0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:52:02.278 -07 000000429 INF: Z Motor: Settle wait time = 2270 ms, measure time = 107 ms (allowed 150 ms), total time = 2377 ms
17-03-17 17:52:02.278 -07 000000429 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 17:52:02.328 -07 000000429 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2661 ms
17-03-17 17:52:02.328 -07 000000429 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:52:02.328 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:52:02.328 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:52:02.328 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:52:02.328 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:52:02.328 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:52:02.328 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:52:02.328 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:52:02.328 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:52:02.338 -07 000000626 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:52:02.338 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:52:02.348 -07 000000626 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 17:52:02.348 -07 000000626 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 17:52:02.348 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:52:02.398 -07 000000547 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:52:02.598 -07 000000486 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:52:02.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:52:02.598 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:52:02.598 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2403175240, 0x0, 559484976) start.
17-03-17 17:52:02.628 -07 000000459 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:52:02.638 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-17 17:52:02.638 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 17:52:02.718 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2403175240, 0x0, 559484976) end. Duration was 124 ms.
17-03-17 17:52:02.718 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:52:02.718 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 17:52:02.718 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 126 ms.
17-03-17 17:52:02.738 -07 000000459 INF: Autofocus start
17-03-17 17:52:02.738 -07 000000626 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:52:02.738 -07 000000459 INF: MeasureProfile start
17-03-17 17:52:02.738 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:52:02.748 -07 000000626 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:52:02.748 -07 000000626 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:52:02.748 -07 000000459 INF: MeasureProfile done
17-03-17 17:52:02.748 -07 000000459 INF: X=16  Z correction [um]=0.01042744
17-03-17 17:52:02.748 -07 000000459 INF: Autofocus finished
17-03-17 17:52:02.948 -07 000000547 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:52:02.948 -07 000000626 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 202 ms overall
17-03-17 17:52:02.948 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.564453125, Z-position -0.178250472893394. ----------
17-03-17 17:52:02.958 -07 000000610 INF: Cycle	6	Tile	3	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:52:02.958 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37457, sync = True, waitForSettling = True)
17-03-17 17:52:02.958 -07 000000610 INF: Z Motor: Moving to -0.171467 mm, started at -0.178250 mm, distance = 6.78 um
17-03-17 17:52:02.958 -07 000000610 INF: FPGA: Xmit ZDACW 37457\n [Z Motor]
17-03-17 17:52:02.958 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 17:52:02.968 -07 000000610 INF: FPGA: 'ZDACW 37457' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:52:02.968 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:52:02.968 -07 000000541 INF: FPGA: Recv ZDACR 37457
17-03-17 17:52:02.978 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:02.978 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:52:03.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:03.128 -07 000000429 INF: FPGA: Recv ZSGSRD 35985
17-03-17 17:52:03.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:52:03.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:03.138 -07 000000486 INF: FPGA: Recv ZSGSRD 35981
17-03-17 17:52:03.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:03.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:03.148 -07 000000541 INF: FPGA: Recv ZSGSRD 35987
17-03-17 17:52:03.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:03.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:03.158 -07 000000459 INF: FPGA: Recv ZSGSRD 35981
17-03-17 17:52:03.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:03.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:03.168 -07 000000626 INF: FPGA: Recv ZSGSRD 35979
17-03-17 17:52:03.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:03.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:03.178 -07 000000551 INF: FPGA: Recv ZSGSRD 35979
17-03-17 17:52:03.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:03.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:03.188 -07 000000429 INF: FPGA: Recv ZSGSRD 35982
17-03-17 17:52:03.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:52:03.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:03.198 -07 000000576 INF: FPGA: Recv ZSGSRD 35975
17-03-17 17:52:03.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:03.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:03.208 -07 000000429 INF: FPGA: Recv ZSGSRD 35980
17-03-17 17:52:03.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:03.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:03.218 -07 000000486 INF: FPGA: Recv ZSGSRD 35981
17-03-17 17:52:03.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:03.228 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:52:03.228 -07 000000541 INF: FPGA: Recv ZPIEZORD 31896
17-03-17 17:52:03.238 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:03.238 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.716 V. Piezo Error = -9.0 V.
17-03-17 17:52:03.238 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.5 um, Read 10 ADC samples: Avg = 35981 (-170.6 uncal um), Error = 0.9 uncal um, Median = 35981 (-170.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35975 (-170.6 uncal um), Max = 35987 (-170.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:52:03.238 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35981, posNoise = 6, negNoise = 6
17-03-17 17:52:03.238 -07 000000610 INF: Z Motor: After move to -0.171467, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:52:03.238 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 17:52:03.238 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:52:03.238 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:52:03.238 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:52:03.238 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:52:03.238 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:52:03.238 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:52:03.238 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:52:03.238 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:52:03.238 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:52:03.238 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:52:03.238 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:52:03.238 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:52:03.238 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:52:03.238 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:52:03.248 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:52:03.248 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:52:03.248 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:52:03.248 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 17:52:03.248 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 17:52:03.248 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 17:52:03.258 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37633 150\n [Camera]
17-03-17 17:52:03.458 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:52:03.848 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:52:03.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:52:03.848 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:52:03.848 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:52:03.848 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-17 17:52:03.848 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:52:03.848 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:52:03.848 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:52:03.848 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:52:03.848 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-17 17:52:04.038 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37633 775
17-03-17 17:52:04.188 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:52:04.218 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 17:52:04.218 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-17 17:52:04.218 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:52:04.228 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 17:52:04.228 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:52:04.228 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 17:52:04.228 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:52:04.228 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:52:04.228 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 17:52:04.228 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 17:52:04.378 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:52:04.378 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:52:04.378 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:52:04.508 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:52:04.508 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:52:04.508 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:52:04.508 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:52:04.508 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-17 17:52:04.518 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:52:04.518 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-17 17:52:04.568 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:52:04.568 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:52:04.568 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37633 150' command took 2 ms to send, 1306 ms to get response, and 1312 ms overall
17-03-17 17:52:04.568 -07 000000610 INF: Skipping AutoFocus in Tile 4: adopting Best-Z from the cache: -0.171646
17-03-17 17:52:04.568 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17165 mm
17-03-17 17:52:04.568 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:52:04.578 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 17:52:04.578 -07 000000431 INF: Y Motor: Moving to 62.4026 mm, started at 61.5645 mm, delta = 0.8382 mm
17-03-17 17:52:04.578 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:52:04.578 -07 000000547 INF: Z Motor: Entering MoveAbsStepped (DAC = 37496, sync = True, waitForSettling = False)
17-03-17 17:52:04.578 -07 000000547 INF: Z Motor: Moving to -0.171646 mm, started at -0.171473 mm, distance = -0.17 um
17-03-17 17:52:04.578 -07 000000551 INF: FPGA: Recv YRDPOS 126085
17-03-17 17:52:04.588 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:04.588 -07 000000431 INF: Y Motor: Encoder = 126085 = motor step 98503.9 = 61.5649 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:52:04.588 -07 000000547 INF: FPGA: Xmit ZDACW 37496\n [Z Motor]
17-03-17 17:52:04.588 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 17:52:04.588 -07 000000431 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:52:04.588 -07 000000431 INF: Y Motor: Moving 1340 steps-17
17-03-17 17:52:04.598 -07 000000547 INF: FPGA: 'ZDACW 37496' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 17:52:04.598 -07 000000547 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:52:04.598 -07 000000576 INF: FPGA: Recv ZDACR 37496
17-03-17 17:52:04.608 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:52:04.608 -07 000000547 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:04.608 -07 000000547 INF: Z Motor: MoveAbsStepped took 28 ms (did NOT wait for settling yet))
17-03-17 17:52:04.888 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 17:52:04.888 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 17:52:04.888 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:52:04.888 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 17:52:04.888 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 17:52:04.888 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:52:04.898 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:52:04.898 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:52:04.898 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 520 ms.
17-03-17 17:52:04.908 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 17:52:04.978 -07 000000541 INF: FPGA: Recv YMVTILE
17-03-17 17:52:04.978 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 17:52:05.008 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:52:05.018 -07 000000541 INF: FPGA: Recv YRDPOS 127787
17-03-17 17:52:05.018 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 17:52:05.018 -07 000000431 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:52:05.018 -07 000000431 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-17 17:52:05.018 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.838 mm, average velocity = 2.127 mm/sec
17-03-17 17:52:05.968 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:52:05.968 -07 000000547 INF: FPGA: Recv YRDPOS 127787
17-03-17 17:52:05.978 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:52:05.978 -07 000000431 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:52:05.988 -07 000000431 INF: Y Motor: After move to 62.402607, error = -0.006611, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:52:05.988 -07 000000431 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:52:05.988 -07 000000431 INF: Y Motor: Moved to 62.3960 after 1417 ms (table move)
17-03-17 17:52:05.998 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171646 mm (DAC = 37496)
17-03-17 17:52:05.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:05.998 -07 000000541 INF: FPGA: Recv ZSGSRD 36006
17-03-17 17:52:06.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:06.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:06.008 -07 000000541 INF: FPGA: Recv ZSGSRD 36001
17-03-17 17:52:06.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:06.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:06.018 -07 000000431 INF: FPGA: Recv ZSGSRD 36011
17-03-17 17:52:06.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:06.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:06.028 -07 000000486 INF: FPGA: Recv ZSGSRD 36015
17-03-17 17:52:06.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:06.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:06.038 -07 000000486 INF: FPGA: Recv ZSGSRD 36010
17-03-17 17:52:06.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:06.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:06.048 -07 000000486 INF: FPGA: Recv ZSGSRD 36018
17-03-17 17:52:06.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:06.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:06.058 -07 000000547 INF: FPGA: Recv ZSGSRD 36014
17-03-17 17:52:06.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:06.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:06.068 -07 000000541 INF: FPGA: Recv ZSGSRD 36013
17-03-17 17:52:06.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:06.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:06.078 -07 000000431 INF: FPGA: Recv ZSGSRD 36007
17-03-17 17:52:06.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:06.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:06.088 -07 000000431 INF: FPGA: Recv ZSGSRD 35998
17-03-17 17:52:06.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:06.098 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:52:06.098 -07 000000431 INF: FPGA: Recv ZPIEZORD 31941
17-03-17 17:52:06.108 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:06.108 -07 000000610 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.722 V. Piezo Error = -9.0 V.
17-03-17 17:52:06.108 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.6 um, Read 10 ADC samples: Avg = 36009 (-170.8 uncal um), Error = 0.9 uncal um, Median = 36010 (-170.8 uncal um), StdDev = 6 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 35998 (-170.7 uncal um), Max = 36018 (-170.8 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 17:52:06.108 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36009, posNoise = 9, negNoise = 11
17-03-17 17:52:06.108 -07 000000610 INF: Z Motor: After move to -0.171646, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:52:06.108 -07 000000610 INF: Z Motor: Settle wait time = 1418 ms, measure time = 110 ms (allowed 150 ms), total time = 1528 ms
17-03-17 17:52:06.108 -07 000000610 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 17:52:06.148 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1571 ms
17-03-17 17:52:06.148 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:52:06.148 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39599609375, Z-position -0.171652807023805. ----------
17-03-17 17:52:06.148 -07 000000610 INF: Cycle	6	Tile	4	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:52:06.148 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37319, sync = True, waitForSettling = True)
17-03-17 17:52:06.148 -07 000000610 INF: Z Motor: Moving to -0.170835 mm, started at -0.171653 mm, distance = 0.82 um
17-03-17 17:52:06.148 -07 000000610 INF: FPGA: Xmit ZDACW 37319\n [Z Motor]
17-03-17 17:52:06.148 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 17:52:06.158 -07 000000610 INF: FPGA: 'ZDACW 37319' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:52:06.158 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:52:06.158 -07 000000486 INF: FPGA: Recv ZDACR 37319
17-03-17 17:52:06.168 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:06.168 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:52:06.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:06.318 -07 000000547 INF: FPGA: Recv ZSGSRD 35881
17-03-17 17:52:06.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:06.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:06.328 -07 000000431 INF: FPGA: Recv ZSGSRD 35881
17-03-17 17:52:06.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:06.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:06.338 -07 000000547 INF: FPGA: Recv ZSGSRD 35883
17-03-17 17:52:06.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:06.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:06.348 -07 000000541 INF: FPGA: Recv ZSGSRD 35888
17-03-17 17:52:06.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:06.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:06.358 -07 000000547 INF: FPGA: Recv ZSGSRD 35886
17-03-17 17:52:06.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:06.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:06.368 -07 000000541 INF: FPGA: Recv ZSGSRD 35883
17-03-17 17:52:06.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:06.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:06.378 -07 000000547 INF: FPGA: Recv ZSGSRD 35889
17-03-17 17:52:06.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:06.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:06.388 -07 000000431 INF: FPGA: Recv ZSGSRD 35882
17-03-17 17:52:06.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:06.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:06.398 -07 000000541 INF: FPGA: Recv ZSGSRD 35882
17-03-17 17:52:06.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:06.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:06.408 -07 000000547 INF: FPGA: Recv ZSGSRD 35884
17-03-17 17:52:06.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:06.418 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:52:06.418 -07 000000547 INF: FPGA: Recv ZPIEZORD 31748
17-03-17 17:52:06.428 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:06.428 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.695 V. Piezo Error = -9.1 V.
17-03-17 17:52:06.428 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.8 um, Read 10 ADC samples: Avg = 35884 (-170.0 uncal um), Error = 0.9 uncal um, Median = 35883 (-170.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35881 (-170.0 uncal um), Max = 35889 (-170.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 17:52:06.428 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35884, posNoise = 5, negNoise = 3
17-03-17 17:52:06.428 -07 000000610 INF: Z Motor: After move to -0.170835, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:52:06.428 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 17:52:06.428 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:52:06.428 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:52:06.428 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:52:06.428 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:52:06.428 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:52:06.428 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:52:06.428 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:52:06.428 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:52:06.428 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 17:52:06.428 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:52:06.428 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:52:06.428 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:52:06.428 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:52:06.428 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:52:06.428 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:52:06.428 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:52:06.438 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:52:06.438 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 17:52:06.438 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 17:52:06.438 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:52:06.448 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37496 150\n [Camera]
17-03-17 17:52:06.538 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:52:06.538 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 5. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=54, R2=62, Total=116. Warn if over 250 bubbles per interval.
17-03-17 17:52:06.648 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:52:06.798 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 6, FrontChillerTemperature: 3.936262,
17-03-17 17:52:07.038 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:52:07.038 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:52:07.038 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:52:07.038 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:52:07.038 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:52:07.038 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:52:07.048 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:52:07.048 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 17:52:07.048 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:52:07.048 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 17:52:07.228 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37496 775
17-03-17 17:52:07.378 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:52:07.418 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 17:52:07.418 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 17:52:07.418 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:52:07.418 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 374 ms.
17-03-17 17:52:07.418 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 17:52:07.418 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:52:07.428 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:52:07.428 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:52:07.428 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 17:52:07.438 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 17:52:07.668 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:52:07.668 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:52:07.668 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:52:07.668 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:52:07.678 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:52:07.678 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:52:07.678 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:52:07.678 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:52:07.678 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 17:52:07.678 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-17 17:52:07.758 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:52:07.758 -07 000000486 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:52:07.758 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37496 150' command took 2 ms to send, 1305 ms to get response, and 1312 ms overall
17-03-17 17:52:07.758 -07 000000610 INF: Skipping AutoFocus in Tile 5: adopting Best-Z from the cache: -0.171514
17-03-17 17:52:07.758 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17151 mm
17-03-17 17:52:07.758 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:52:07.768 -07 000000433 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 17:52:07.768 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 37467, sync = True, waitForSettling = False)
17-03-17 17:52:07.768 -07 000000576 INF: Z Motor: Moving to -0.171513 mm, started at -0.170850 mm, distance = -0.66 um
17-03-17 17:52:07.768 -07 000000576 INF: FPGA: Xmit ZDACW 37467\n [Z Motor]
17-03-17 17:52:07.768 -07 000000433 INF: Y Motor: Moving to 63.2326 mm, started at 62.3960 mm, delta = 0.8366 mm
17-03-17 17:52:07.768 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 17:52:07.778 -07 000000576 INF: FPGA: 'ZDACW 37467' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:07.778 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:52:07.778 -07 000000409 INF: FPGA: Recv YRDPOS 127787
17-03-17 17:52:07.788 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 17:52:07.788 -07 000000433 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:52:07.788 -07 000000433 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:52:07.788 -07 000000433 INF: Y Motor: Moving 1339 steps-14
17-03-17 17:52:07.788 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:52:07.788 -07 000000541 INF: FPGA: Recv ZDACR 37467
17-03-17 17:52:07.798 -07 000000576 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:52:07.798 -07 000000576 INF: Z Motor: MoveAbsStepped took 29 ms (did NOT wait for settling yet))
17-03-17 17:52:07.798 -07 000000433 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:52:08.058 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 17:52:08.058 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 17:52:08.058 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:52:08.058 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 17:52:08.058 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 17:52:08.058 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:52:08.058 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:52:08.068 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:52:08.068 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 17:52:08.068 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 17:52:08.178 -07 000000486 INF: FPGA: Recv YMVTILE
17-03-17 17:52:08.178 -07 000000433 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 390 ms overall
17-03-17 17:52:08.208 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:52:08.208 -07 000000576 INF: FPGA: Recv YRDPOS 129484
17-03-17 17:52:08.218 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:52:08.218 -07 000000433 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:52:08.218 -07 000000433 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 17:52:08.218 -07 000000433 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.837 mm, average velocity = 2.145 mm/sec
17-03-17 17:52:09.168 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:52:09.168 -07 000000429 INF: FPGA: Recv YRDPOS 129484
17-03-17 17:52:09.178 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:52:09.178 -07 000000433 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:52:09.188 -07 000000433 INF: Y Motor: After move to 63.232609, error = -0.007999, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:52:09.188 -07 000000433 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:52:09.188 -07 000000433 INF: Y Motor: Moved to 63.2246 after 1428 ms (table move)
17-03-17 17:52:09.198 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171513 mm (DAC = 37467)
17-03-17 17:52:09.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:09.198 -07 000000433 INF: FPGA: Recv ZSGSRD 35990
17-03-17 17:52:09.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:52:09.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:09.208 -07 000000424 INF: FPGA: Recv ZSGSRD 35993
17-03-17 17:52:09.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:09.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:09.218 -07 000000433 INF: FPGA: Recv ZSGSRD 35995
17-03-17 17:52:09.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:09.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:09.228 -07 000000424 INF: FPGA: Recv ZSGSRD 35988
17-03-17 17:52:09.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:09.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:09.238 -07 000000433 INF: FPGA: Recv ZSGSRD 35984
17-03-17 17:52:09.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:09.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:09.248 -07 000000424 INF: FPGA: Recv ZSGSRD 35991
17-03-17 17:52:09.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:09.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:09.278 -07 000000424 INF: FPGA: Recv ZSGSRD 35993
17-03-17 17:52:09.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 12 ms to send, 7 ms to get response, and 25 ms overall
17-03-17 17:52:09.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:09.298 -07 000000429 INF: FPGA: Recv ZSGSRD 35987
17-03-17 17:52:09.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 17:52:09.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:09.298 -07 000000424 INF: FPGA: Recv ZSGSRD 35984
17-03-17 17:52:09.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:09.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:09.308 -07 000000541 INF: FPGA: Recv ZSGSRD 35990
17-03-17 17:52:09.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:09.318 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:52:09.318 -07 000000433 INF: FPGA: Recv ZPIEZORD 31914
17-03-17 17:52:09.328 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:09.328 -07 000000610 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.717 V. Piezo Error = -9.0 V.
17-03-17 17:52:09.328 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.5 um, Read 10 ADC samples: Avg = 35990 (-170.7 uncal um), Error = 0.9 uncal um, Median = 35990 (-170.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35984 (-170.6 uncal um), Max = 35995 (-170.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:52:09.328 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35990, posNoise = 5, negNoise = 6
17-03-17 17:52:09.328 -07 000000610 INF: Z Motor: After move to -0.171513, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:52:09.328 -07 000000610 INF: Z Motor: Settle wait time = 1432 ms, measure time = 128 ms (allowed 150 ms), total time = 1560 ms
17-03-17 17:52:09.328 -07 000000610 INF: Z Motor: Waiting extra 22 ms after reading position to reach expected total of 150 ms
17-03-17 17:52:09.358 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1592 ms
17-03-17 17:52:09.358 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:52:09.358 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.224609375, Z-position -0.171530746993112. ----------
17-03-17 17:52:09.358 -07 000000610 INF: Cycle	6	Tile	5	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:52:09.358 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37290, sync = True, waitForSettling = True)
17-03-17 17:52:09.358 -07 000000610 INF: Z Motor: Moving to -0.170703 mm, started at -0.171531 mm, distance = 0.83 um
17-03-17 17:52:09.358 -07 000000610 INF: FPGA: Xmit ZDACW 37290\n [Z Motor]
17-03-17 17:52:09.358 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 17:52:09.368 -07 000000610 INF: FPGA: 'ZDACW 37290' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:52:09.368 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:52:09.368 -07 000000409 INF: FPGA: Recv ZDACR 37290
17-03-17 17:52:09.378 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:09.378 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:52:09.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:09.528 -07 000000409 INF: FPGA: Recv ZSGSRD 35864
17-03-17 17:52:09.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:09.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:09.538 -07 000000424 INF: FPGA: Recv ZSGSRD 35865
17-03-17 17:52:09.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:09.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:09.548 -07 000000424 INF: FPGA: Recv ZSGSRD 35864
17-03-17 17:52:09.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:09.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:09.558 -07 000000541 INF: FPGA: Recv ZSGSRD 35861
17-03-17 17:52:09.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:09.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:09.568 -07 000000424 INF: FPGA: Recv ZSGSRD 35859
17-03-17 17:52:09.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:09.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:09.578 -07 000000541 INF: FPGA: Recv ZSGSRD 35863
17-03-17 17:52:09.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:09.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:09.588 -07 000000541 INF: FPGA: Recv ZSGSRD 35864
17-03-17 17:52:09.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:09.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:09.598 -07 000000409 INF: FPGA: Recv ZSGSRD 35860
17-03-17 17:52:09.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:09.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:09.608 -07 000000433 INF: FPGA: Recv ZSGSRD 35863
17-03-17 17:52:09.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:09.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:09.618 -07 000000424 INF: FPGA: Recv ZSGSRD 35862
17-03-17 17:52:09.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:09.628 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:52:09.628 -07 000000409 INF: FPGA: Recv ZPIEZORD 31755
17-03-17 17:52:09.638 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:09.638 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.690 V. Piezo Error = -9.1 V.
17-03-17 17:52:09.638 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.7 um, Read 10 ADC samples: Avg = 35862 (-169.8 uncal um), Error = 0.9 uncal um, Median = 35863 (-169.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35859 (-169.8 uncal um), Max = 35865 (-169.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 17:52:09.638 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35862, posNoise = 3, negNoise = 3
17-03-17 17:52:09.638 -07 000000610 INF: Z Motor: After move to -0.170703, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:52:09.638 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 17:52:09.638 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:52:09.638 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:52:09.638 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:52:09.638 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:52:09.638 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:52:09.638 -07 000000409 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:52:09.638 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:52:09.638 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:52:09.638 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:52:09.638 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:52:09.638 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:52:09.638 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:52:09.638 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:52:09.638 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:52:09.648 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 5 ms.
17-03-17 17:52:09.648 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:52:09.658 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 17 ms.
17-03-17 17:52:09.658 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 17:52:09.658 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 17:52:09.658 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 17:52:09.668 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37467 150\n [Camera]
17-03-17 17:52:09.868 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:52:10.258 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:52:10.258 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:52:10.258 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:52:10.258 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:52:10.258 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:52:10.258 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:52:10.258 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:52:10.258 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 17:52:10.268 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:52:10.268 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) start.
17-03-17 17:52:10.448 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37467 775
17-03-17 17:52:10.598 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:52:10.648 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 17:52:10.648 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 17:52:10.648 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:52:10.648 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:52:10.648 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 17:52:10.648 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 17:52:10.648 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 17:52:10.648 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:52:10.658 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:52:10.658 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 17:52:10.788 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:52:10.788 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:52:10.788 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:52:10.788 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:52:10.788 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:52:10.788 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:52:10.788 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 2334002848, 0x0, 391868352) start.
17-03-17 17:52:10.798 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:52:10.798 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:52:10.798 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 17:52:10.978 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:52:10.978 -07 000000433 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:52:10.978 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37467 150' command took 2 ms to send, 1303 ms to get response, and 1312 ms overall
17-03-17 17:52:10.978 -07 000000610 INF: Skipping AutoFocus in Tile 6: adopting Best-Z from the cache: -0.170837
17-03-17 17:52:10.978 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17084 mm
17-03-17 17:52:10.978 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:52:10.978 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 17:52:10.978 -07 000000626 INF: Y Motor: Moving to 64.0626 mm, started at 63.2246 mm, delta = 0.8380 mm
17-03-17 17:52:10.978 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:52:10.978 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 37319, sync = True, waitForSettling = False)
17-03-17 17:52:10.978 -07 000000486 INF: Z Motor: Moving to -0.170835 mm, started at -0.170708 mm, distance = -0.13 um
17-03-17 17:52:10.988 -07 000000486 INF: FPGA: Xmit ZDACW 37319\n [Z Motor]
17-03-17 17:52:10.988 -07 000000541 INF: FPGA: Recv YRDPOS 129485
17-03-17 17:52:10.988 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 17:52:10.988 -07 000000626 INF: Y Motor: Encoder = 129485 = motor step 101160.2 = 63.2251 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:52:10.988 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 17:52:10.988 -07 000000626 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:52:10.988 -07 000000626 INF: Y Motor: Moving 1340 steps-16
17-03-17 17:52:10.998 -07 000000486 INF: FPGA: 'ZDACW 37319' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:52:10.998 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:52:10.998 -07 000000433 INF: FPGA: Recv ZDACR 37319
17-03-17 17:52:11.008 -07 000000486 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:11.008 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:52:11.008 -07 000000486 INF: Z Motor: MoveAbsStepped took 21 ms (did NOT wait for settling yet))
17-03-17 17:52:11.168 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 2334002848, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 17:52:11.168 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 17:52:11.168 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:52:11.168 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 17:52:11.168 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 17:52:11.168 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:52:11.178 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:52:11.178 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 17:52:11.178 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:52:11.188 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 17:52:11.378 -07 000000459 INF: FPGA: Recv YMVTILE
17-03-17 17:52:11.378 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-17 17:52:11.418 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:52:11.418 -07 000000486 INF: FPGA: Recv YRDPOS 131189
17-03-17 17:52:11.428 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:11.428 -07 000000626 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:52:11.428 -07 000000626 INF: Y Motor: Position error before settling (table move) = -11 encoder counts (-0.005 mm)
17-03-17 17:52:11.428 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.838 mm, average velocity = 2.138 mm/sec
17-03-17 17:52:11.538 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:52:11.538 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 5. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=54, R2=62, Total=116. Warn if over 250 bubbles per interval.
17-03-17 17:52:12.168 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 6, FrontChillerTemperature: 3.898013,
17-03-17 17:52:12.378 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:52:12.378 -07 000000547 INF: FPGA: Recv YRDPOS 131190
17-03-17 17:52:12.388 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:52:12.388 -07 000000626 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:52:12.398 -07 000000626 INF: Y Motor: After move to 64.062607, error = -0.004990, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:52:12.398 -07 000000626 INF: Y Motor: Position error after settling (table move) = -10 encoder counts (-0.005 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 17:52:12.398 -07 000000626 INF: Y Motor: Moved to 64.0576 after 1417 ms (table move)
17-03-17 17:52:12.398 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.170835 mm (DAC = 37319)
17-03-17 17:52:12.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:12.408 -07 000000626 INF: FPGA: Recv ZSGSRD 35886
17-03-17 17:52:12.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 17:52:12.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:12.408 -07 000000626 INF: FPGA: Recv ZSGSRD 35893
17-03-17 17:52:12.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:52:12.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:12.418 -07 000000626 INF: FPGA: Recv ZSGSRD 35880
17-03-17 17:52:12.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:12.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:12.428 -07 000000433 INF: FPGA: Recv ZSGSRD 35880
17-03-17 17:52:12.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:12.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:12.438 -07 000000626 INF: FPGA: Recv ZSGSRD 35887
17-03-17 17:52:12.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:12.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:12.448 -07 000000433 INF: FPGA: Recv ZSGSRD 35896
17-03-17 17:52:12.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:12.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:12.458 -07 000000486 INF: FPGA: Recv ZSGSRD 35887
17-03-17 17:52:12.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:12.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:12.468 -07 000000433 INF: FPGA: Recv ZSGSRD 35885
17-03-17 17:52:12.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:12.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:12.488 -07 000000541 INF: FPGA: Recv ZSGSRD 35885
17-03-17 17:52:12.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:52:12.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:12.518 -07 000000431 INF: FPGA: Recv ZSGSRD 35888
17-03-17 17:52:12.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:52:12.548 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:52:12.548 -07 000000459 INF: FPGA: Recv ZPIEZORD 31792
17-03-17 17:52:12.558 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:52:12.558 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.695 V. Piezo Error = -9.0 V.
17-03-17 17:52:12.558 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.8 um, Read 10 ADC samples: Avg = 35887 (-170.0 uncal um), Error = 0.8 uncal um, Median = 35886 (-170.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35880 (-169.9 uncal um), Max = 35896 (-170.0 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 17:52:12.558 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35887, posNoise = 9, negNoise = 7
17-03-17 17:52:12.558 -07 000000610 INF: Z Motor: After move to -0.170835, error = -0.000034, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:52:12.558 -07 000000610 INF: Z Motor: Settle wait time = 1419 ms, measure time = 152 ms (allowed 150 ms), total time = 1571 ms
17-03-17 17:52:12.558 -07 000000610 INF: Z Motor: Warning: Actual position measuring time = 152 ms, longer than max expected time of 150 ms
17-03-17 17:52:12.558 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1574 ms
17-03-17 17:52:12.558 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:52:12.558 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.0576171875, Z-position -0.17086905314251. ----------
17-03-17 17:52:12.558 -07 000000610 INF: Cycle	6	Tile	6	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:52:12.558 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37143, sync = True, waitForSettling = True)
17-03-17 17:52:12.558 -07 000000610 INF: Z Motor: Moving to -0.170030 mm, started at -0.170869 mm, distance = 0.84 um
17-03-17 17:52:12.558 -07 000000610 INF: FPGA: Xmit ZDACW 37143\n [Z Motor]
17-03-17 17:52:12.558 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 17:52:12.568 -07 000000610 INF: FPGA: 'ZDACW 37143' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 17:52:12.568 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:52:12.568 -07 000000433 INF: FPGA: Recv ZDACR 37143
17-03-17 17:52:12.578 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:12.578 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:52:12.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:12.728 -07 000000541 INF: FPGA: Recv ZSGSRD 35751
17-03-17 17:52:12.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:52:12.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:12.738 -07 000000433 INF: FPGA: Recv ZSGSRD 35760
17-03-17 17:52:12.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:12.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:12.748 -07 000000541 INF: FPGA: Recv ZSGSRD 35754
17-03-17 17:52:12.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:12.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:12.758 -07 000000551 INF: FPGA: Recv ZSGSRD 35760
17-03-17 17:52:12.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:12.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:12.768 -07 000000551 INF: FPGA: Recv ZSGSRD 35764
17-03-17 17:52:12.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:12.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:12.778 -07 000000547 INF: FPGA: Recv ZSGSRD 35762
17-03-17 17:52:12.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:12.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:12.788 -07 000000431 INF: FPGA: Recv ZSGSRD 35760
17-03-17 17:52:12.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:12.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:12.798 -07 000000547 INF: FPGA: Recv ZSGSRD 35750
17-03-17 17:52:12.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:12.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:12.808 -07 000000547 INF: FPGA: Recv ZSGSRD 35754
17-03-17 17:52:12.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:12.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:12.818 -07 000000431 INF: FPGA: Recv ZSGSRD 35764
17-03-17 17:52:12.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:12.828 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:52:12.828 -07 000000551 INF: FPGA: Recv ZPIEZORD 31626
17-03-17 17:52:12.838 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:12.838 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.668 V. Piezo Error = -9.1 V.
17-03-17 17:52:12.838 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.0 um, Read 10 ADC samples: Avg = 35758 (-169.2 uncal um), Error = 0.9 uncal um, Median = 35760 (-169.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35750 (-169.1 uncal um), Max = 35764 (-169.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 17:52:12.838 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35758, posNoise = 6, negNoise = 8
17-03-17 17:52:12.838 -07 000000610 INF: Z Motor: After move to -0.170030, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:52:12.838 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:52:12.838 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:52:12.838 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:52:12.838 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:52:12.838 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:52:12.838 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:52:12.838 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:52:12.838 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:52:12.838 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:52:12.838 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:52:12.838 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:52:12.838 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:52:12.838 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:52:12.838 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:52:12.838 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:52:12.848 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:52:12.848 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:52:12.848 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 17:52:12.848 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:52:12.858 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 17:52:12.858 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 17:52:12.858 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37319 150\n [Camera]
17-03-17 17:52:13.058 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:52:13.448 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:52:13.448 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:52:13.448 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:52:13.448 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:52:13.448 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2239612688, 0x0, 391868352) start.
17-03-17 17:52:13.448 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:52:13.448 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:52:13.448 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:52:13.558 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:52:13.558 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-17 17:52:13.638 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37319 775
17-03-17 17:52:13.788 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:52:13.838 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2239612688, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 17:52:13.838 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 17:52:13.838 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:52:13.848 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:52:13.848 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 17:52:13.958 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 17:52:13.958 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 17:52:13.958 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:52:13.958 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 17:52:13.968 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 516 ms.
17-03-17 17:52:13.978 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:52:13.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:52:13.978 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:52:13.978 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:52:13.978 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:52:13.978 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:52:13.978 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:52:13.988 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 17:52:13.988 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:52:13.988 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 17:52:14.168 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:52:14.168 -07 000000547 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:52:14.168 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37319 150' command took 2 ms to send, 1306 ms to get response, and 1312 ms overall
17-03-17 17:52:14.168 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:52:14.168 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.0576171875, Z-Position -0.170040329776223. ------
17-03-17 17:52:14.178 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:52:14.368 -07 000000431 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 17:52:14.368 -07 000000431 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 17:52:14.368 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:52:14.368 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 17:52:14.368 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 17:52:14.368 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:52:14.368 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:52:14.368 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:52:14.368 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 17:52:14.378 -07 000000431 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 17:52:14.388 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:52:14.388 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 201 ms to get response, and 209 ms overall
17-03-17 17:52:14.388 -07 000000547 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:52:14.388 -07 000000551 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17646 mm
17-03-17 17:52:14.388 -07 000000551 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:52:14.388 -07 000000459 INF: Z Motor: Entering MoveAbsStepped (DAC = 38547, sync = True, waitForSettling = False)
17-03-17 17:52:14.388 -07 000000459 INF: Z Motor: Moving to -0.176457 mm, started at -0.170040 mm, distance = -6.42 um
17-03-17 17:52:14.388 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 17:52:14.388 -07 000000576 INF: Y Motor: Moving to 64.8926 mm, started at 64.0576 mm, delta = 0.8350 mm
17-03-17 17:52:14.398 -07 000000459 INF: FPGA: Xmit ZDACW 38547\n [Z Motor]
17-03-17 17:52:14.398 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 17:52:14.408 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:52:14.408 -07 000000459 INF: FPGA: 'ZDACW 38547' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 17:52:14.408 -07 000000424 INF: FPGA: Recv YRDPOS 131190
17-03-17 17:52:14.418 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 17:52:14.418 -07 000000576 INF: Y Motor: Encoder = 131190 = motor step 102492.2 = 64.0576 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:52:14.418 -07 000000576 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:52:14.418 -07 000000576 INF: Y Motor: Moving 1336 steps-11
17-03-17 17:52:14.418 -07 000000459 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:52:14.418 -07 000000593 INF: FPGA: Recv ZDACR 38547
17-03-17 17:52:14.428 -07 000000459 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:52:14.428 -07 000000459 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-17 17:52:14.428 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:52:14.588 -07 000000541 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:52:14.588 -07 000000547 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 17:52:14.798 -07 000000593 INF: FPGA: Recv YMVTILE
17-03-17 17:52:14.798 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 388 ms overall
17-03-17 17:52:14.828 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:52:14.838 -07 000000626 INF: FPGA: Recv YRDPOS 132873
17-03-17 17:52:14.838 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 17:52:14.838 -07 000000576 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:52:14.838 -07 000000576 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 17:52:14.838 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.835 mm, average velocity = 2.152 mm/sec
17-03-17 17:52:15.788 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:52:15.788 -07 000000431 INF: FPGA: Recv YRDPOS 132873
17-03-17 17:52:15.798 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:52:15.798 -07 000000576 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:52:15.818 -07 000000576 INF: Y Motor: After move to 64.892609, error = -0.013214, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:52:15.818 -07 000000576 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:52:15.818 -07 000000576 INF: Y Motor: Moved to 64.8794 after 1424 ms (table move)
17-03-17 17:52:15.818 -07 000000551 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176457 mm (DAC = 38547)
17-03-17 17:52:15.818 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:15.818 -07 000000541 INF: FPGA: Recv ZSGSRD 36752
17-03-17 17:52:15.828 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:52:15.828 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:15.828 -07 000000424 INF: FPGA: Recv ZSGSRD 36764
17-03-17 17:52:15.838 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:52:15.838 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:15.838 -07 000000486 INF: FPGA: Recv ZSGSRD 36757
17-03-17 17:52:15.848 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:15.848 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:15.848 -07 000000424 INF: FPGA: Recv ZSGSRD 36754
17-03-17 17:52:15.858 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:15.858 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:15.858 -07 000000486 INF: FPGA: Recv ZSGSRD 36751
17-03-17 17:52:15.868 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:15.868 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:15.868 -07 000000424 INF: FPGA: Recv ZSGSRD 36764
17-03-17 17:52:15.878 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:15.878 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:15.878 -07 000000486 INF: FPGA: Recv ZSGSRD 36764
17-03-17 17:52:15.888 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:15.888 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:15.888 -07 000000486 INF: FPGA: Recv ZSGSRD 36760
17-03-17 17:52:15.898 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:15.898 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:15.898 -07 000000486 INF: FPGA: Recv ZSGSRD 36758
17-03-17 17:52:15.908 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:15.908 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:15.908 -07 000000424 INF: FPGA: Recv ZSGSRD 36754
17-03-17 17:52:15.918 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:15.918 -07 000000551 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:52:15.918 -07 000000486 INF: FPGA: Recv ZPIEZORD 32946
17-03-17 17:52:15.928 -07 000000551 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:15.928 -07 000000551 INF: Z Motor: Piezo is near 50.4 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.882 V. Piezo Error = -8.4 V.
17-03-17 17:52:15.928 -07 000000551 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.5 um, Read 10 ADC samples: Avg = 36758 (-175.6 uncal um), Error = 0.9 uncal um, Median = 36758 (-175.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36751 (-175.5 uncal um), Max = 36764 (-175.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 17:52:15.928 -07 000000551 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36758, posNoise = 6, negNoise = 7
17-03-17 17:52:15.928 -07 000000551 INF: Z Motor: After move to -0.176457, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:52:15.928 -07 000000551 INF: Z Motor: Settle wait time = 1428 ms, measure time = 107 ms (allowed 150 ms), total time = 1535 ms
17-03-17 17:52:15.928 -07 000000551 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 17:52:15.978 -07 000000551 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1587 ms
17-03-17 17:52:15.978 -07 000000551 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:52:15.978 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:52:15.978 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:52:15.978 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:52:15.978 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:52:15.978 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:52:15.978 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:52:15.978 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 17:52:15.978 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:52:15.988 -07 000000431 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:52:15.988 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:52:15.988 -07 000000431 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 17:52:15.988 -07 000000431 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 17:52:15.998 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:52:16.038 -07 000000486 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:52:16.238 -07 000000486 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:52:16.238 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:52:16.238 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:52:16.238 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2298580584, 0x0, 559484976) start.
17-03-17 17:52:16.278 -07 000000431 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:52:16.278 -07 000000541 INF: FPGA: Recv CAMSNAP
17-03-17 17:52:16.278 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 284 ms overall
17-03-17 17:52:16.358 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2298580584, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 17:52:16.358 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:52:16.358 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:52:16.358 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 17:52:16.378 -07 000000551 INF: Autofocus start
17-03-17 17:52:16.378 -07 000000551 INF: MeasureProfile start
17-03-17 17:52:16.378 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:52:16.378 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:52:16.388 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:52:16.388 -07 000000429 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:52:16.388 -07 000000551 INF: MeasureProfile done
17-03-17 17:52:16.388 -07 000000551 INF: X=80  Z correction [um]=0.337546
17-03-17 17:52:16.388 -07 000000551 INF: Autofocus finished
17-03-17 17:52:16.538 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:52:16.538 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 5. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=54, R2=62, Total=116. Warn if over 250 bubbles per interval.
17-03-17 17:52:16.588 -07 000000431 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:52:16.588 -07 000000429 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:52:16.588 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87939453125, Z-position -0.176464541917984. ----------
17-03-17 17:52:16.588 -07 000000610 INF: Cycle	6	Tile	7	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:52:16.598 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37133, sync = True, waitForSettling = True)
17-03-17 17:52:16.598 -07 000000610 INF: Z Motor: Moving to -0.169984 mm, started at -0.176465 mm, distance = 6.48 um
17-03-17 17:52:16.598 -07 000000610 INF: FPGA: Xmit ZDACW 37133\n [Z Motor]
17-03-17 17:52:16.598 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 17:52:16.608 -07 000000610 INF: FPGA: 'ZDACW 37133' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:52:16.608 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:52:16.608 -07 000000576 INF: FPGA: Recv ZDACR 37133
17-03-17 17:52:16.618 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:16.618 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:52:16.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:16.768 -07 000000576 INF: FPGA: Recv ZSGSRD 35755
17-03-17 17:52:16.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:52:16.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:16.778 -07 000000429 INF: FPGA: Recv ZSGSRD 35751
17-03-17 17:52:16.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:16.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:16.788 -07 000000429 INF: FPGA: Recv ZSGSRD 35747
17-03-17 17:52:16.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:16.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:16.798 -07 000000593 INF: FPGA: Recv ZSGSRD 35748
17-03-17 17:52:16.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:16.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:16.808 -07 000000593 INF: FPGA: Recv ZSGSRD 35751
17-03-17 17:52:16.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:16.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:16.818 -07 000000429 INF: FPGA: Recv ZSGSRD 35756
17-03-17 17:52:16.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:16.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:16.828 -07 000000429 INF: FPGA: Recv ZSGSRD 35754
17-03-17 17:52:16.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:16.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:16.838 -07 000000551 INF: FPGA: Recv ZSGSRD 35749
17-03-17 17:52:16.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:16.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:16.848 -07 000000576 INF: FPGA: Recv ZSGSRD 35749
17-03-17 17:52:16.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:16.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:16.858 -07 000000429 INF: FPGA: Recv ZSGSRD 35748
17-03-17 17:52:16.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:16.868 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:52:16.868 -07 000000429 INF: FPGA: Recv ZPIEZORD 31561
17-03-17 17:52:16.878 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:16.878 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.666 V. Piezo Error = -9.2 V.
17-03-17 17:52:16.878 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.0 um, Read 10 ADC samples: Avg = 35751 (-169.1 uncal um), Error = 0.9 uncal um, Median = 35750 (-169.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35747 (-169.1 uncal um), Max = 35756 (-169.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:52:16.878 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35751, posNoise = 5, negNoise = 4
17-03-17 17:52:16.878 -07 000000610 INF: Z Motor: After move to -0.169984, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:52:16.878 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 17:52:16.878 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:52:16.878 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:52:16.878 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:52:16.878 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:52:16.878 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:52:16.878 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:52:16.878 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:52:16.878 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:52:16.878 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 17:52:16.878 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:52:16.878 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:52:16.888 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:52:16.888 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:52:16.888 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:52:16.888 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 17:52:16.888 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:52:16.898 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 17:52:16.898 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 17:52:16.898 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 17:52:16.898 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 17:52:16.908 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37310 150\n [Camera]
17-03-17 17:52:17.108 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:52:17.498 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:52:17.498 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:52:17.498 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:52:17.498 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:52:17.498 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:52:17.498 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:52:17.498 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:52:17.498 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 17:52:17.498 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:52:17.498 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2317661968, 0x0, 391868352) start.
17-03-17 17:52:17.538 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 6, FrontChillerTemperature: 3.926717,
17-03-17 17:52:17.688 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37310 775
17-03-17 17:52:17.838 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:52:17.878 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 17:52:17.878 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 17:52:17.878 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:52:17.878 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2317661968, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 17:52:17.878 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 17:52:17.878 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:52:17.888 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 17:52:17.888 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:52:17.888 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 17:52:17.898 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 17:52:18.028 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1114
17-03-17 17:52:18.028 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1114
17-03-17 17:52:18.028 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:52:18.138 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1114
17-03-17 17:52:18.138 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1114
17-03-17 17:52:18.138 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:52:18.138 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:52:18.138 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1048252464, 0x0, 391868352) start.
17-03-17 17:52:18.138 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:52:18.138 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-17 17:52:18.218 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:52:18.218 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:52:18.218 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37310 150' command took 2 ms to send, 1304 ms to get response, and 1312 ms overall
17-03-17 17:52:18.218 -07 000000610 INF: Skipping AutoFocus in Tile 8: adopting Best-Z from the cache: -0.170509
17-03-17 17:52:18.218 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17051 mm
17-03-17 17:52:18.218 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:52:18.218 -07 000000486 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 17:52:18.218 -07 000000486 INF: Y Motor: Moving to 65.7226 mm, started at 64.8794 mm, delta = 0.8432 mm
17-03-17 17:52:18.218 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:52:18.228 -07 000000547 INF: Z Motor: Entering MoveAbsStepped (DAC = 37248, sync = True, waitForSettling = False)
17-03-17 17:52:18.228 -07 000000547 INF: Z Motor: Moving to -0.170510 mm, started at -0.169995 mm, distance = -0.52 um
17-03-17 17:52:18.228 -07 000000547 INF: FPGA: Xmit ZDACW 37248\n [Z Motor]
17-03-17 17:52:18.228 -07 000000541 INF: FPGA: Recv YRDPOS 132873
17-03-17 17:52:18.228 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 17:52:18.228 -07 000000486 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:52:18.228 -07 000000486 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:52:18.228 -07 000000486 INF: Y Motor: Moving 1349 steps-27
17-03-17 17:52:18.228 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 17:52:18.238 -07 000000547 INF: FPGA: 'ZDACW 37248' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:18.238 -07 000000486 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:52:18.248 -07 000000547 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:52:18.248 -07 000000576 INF: FPGA: Recv ZDACR 37248
17-03-17 17:52:18.258 -07 000000547 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:52:18.258 -07 000000547 INF: Z Motor: MoveAbsStepped took 29 ms (did NOT wait for settling yet))
17-03-17 17:52:18.518 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 17:52:18.518 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 17:52:18.518 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:52:18.518 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 1048252464, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 17:52:18.518 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 17:52:18.518 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:52:18.518 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:52:18.518 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:52:18.518 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 493 ms.
17-03-17 17:52:18.528 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 17:52:18.608 -07 000000459 INF: FPGA: Recv YMVTILE
17-03-17 17:52:18.608 -07 000000486 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-17 17:52:18.648 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:52:18.648 -07 000000547 INF: FPGA: Recv YRDPOS 134584
17-03-17 17:52:18.658 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:18.658 -07 000000486 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:52:18.658 -07 000000486 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 17:52:18.658 -07 000000486 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.843 mm, average velocity = 2.190 mm/sec
17-03-17 17:52:19.608 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:52:19.608 -07 000000409 INF: FPGA: Recv YRDPOS 134584
17-03-17 17:52:19.618 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:52:19.618 -07 000000486 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:52:19.628 -07 000000486 INF: Y Motor: After move to 65.722610, error = -0.007767, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:52:19.628 -07 000000486 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:52:19.628 -07 000000486 INF: Y Motor: Moved to 65.7148 after 1410 ms (table move)
17-03-17 17:52:19.638 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.170510 mm (DAC = 37248)
17-03-17 17:52:19.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:19.638 -07 000000459 INF: FPGA: Recv ZSGSRD 35834
17-03-17 17:52:19.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:52:19.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:19.648 -07 000000431 INF: FPGA: Recv ZSGSRD 35829
17-03-17 17:52:19.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:19.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:19.658 -07 000000429 INF: FPGA: Recv ZSGSRD 35832
17-03-17 17:52:19.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:19.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:19.668 -07 000000486 INF: FPGA: Recv ZSGSRD 35842
17-03-17 17:52:19.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:19.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:19.678 -07 000000459 INF: FPGA: Recv ZSGSRD 35840
17-03-17 17:52:19.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:19.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:19.688 -07 000000431 INF: FPGA: Recv ZSGSRD 35832
17-03-17 17:52:19.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:19.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:19.698 -07 000000429 INF: FPGA: Recv ZSGSRD 35832
17-03-17 17:52:19.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:19.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:19.708 -07 000000431 INF: FPGA: Recv ZSGSRD 35830
17-03-17 17:52:19.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:19.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:19.718 -07 000000486 INF: FPGA: Recv ZSGSRD 35828
17-03-17 17:52:19.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:19.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:19.728 -07 000000429 INF: FPGA: Recv ZSGSRD 35833
17-03-17 17:52:19.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:19.738 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:52:19.738 -07 000000431 INF: FPGA: Recv ZPIEZORD 31740
17-03-17 17:52:19.748 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:19.748 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.684 V. Piezo Error = -9.0 V.
17-03-17 17:52:19.748 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.5 um, Read 10 ADC samples: Avg = 35833 (-169.6 uncal um), Error = 0.9 uncal um, Median = 35832 (-169.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35828 (-169.6 uncal um), Max = 35842 (-169.7 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:52:19.748 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35833, posNoise = 9, negNoise = 5
17-03-17 17:52:19.748 -07 000000610 INF: Z Motor: After move to -0.170510, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:52:19.748 -07 000000610 INF: Z Motor: Settle wait time = 1412 ms, measure time = 108 ms (allowed 150 ms), total time = 1520 ms
17-03-17 17:52:19.748 -07 000000610 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 17:52:19.798 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1573 ms
17-03-17 17:52:19.798 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:52:19.798 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71484375, Z-position -0.170522145686855. ----------
17-03-17 17:52:19.798 -07 000000610 INF: Cycle	6	Tile	8	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:52:19.798 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37071, sync = True, waitForSettling = True)
17-03-17 17:52:19.798 -07 000000610 INF: Z Motor: Moving to -0.169700 mm, started at -0.170522 mm, distance = 0.82 um
17-03-17 17:52:19.798 -07 000000610 INF: FPGA: Xmit ZDACW 37071\n [Z Motor]
17-03-17 17:52:19.798 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 17:52:19.808 -07 000000610 INF: FPGA: 'ZDACW 37071' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:52:19.808 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:52:19.808 -07 000000433 INF: FPGA: Recv ZDACR 37071
17-03-17 17:52:19.818 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:19.818 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:52:19.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:19.968 -07 000000486 INF: FPGA: Recv ZSGSRD 35705
17-03-17 17:52:19.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:52:19.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:19.978 -07 000000551 INF: FPGA: Recv ZSGSRD 35712
17-03-17 17:52:19.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:19.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:19.988 -07 000000424 INF: FPGA: Recv ZSGSRD 35707
17-03-17 17:52:19.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:19.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:19.998 -07 000000486 INF: FPGA: Recv ZSGSRD 35709
17-03-17 17:52:20.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:20.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:20.008 -07 000000424 INF: FPGA: Recv ZSGSRD 35709
17-03-17 17:52:20.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:20.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:20.018 -07 000000486 INF: FPGA: Recv ZSGSRD 35696
17-03-17 17:52:20.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:20.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:20.028 -07 000000486 INF: FPGA: Recv ZSGSRD 35710
17-03-17 17:52:20.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:20.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:20.038 -07 000000409 INF: FPGA: Recv ZSGSRD 35707
17-03-17 17:52:20.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:20.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:20.048 -07 000000551 INF: FPGA: Recv ZSGSRD 35706
17-03-17 17:52:20.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:20.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:20.058 -07 000000433 INF: FPGA: Recv ZSGSRD 35709
17-03-17 17:52:20.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:20.068 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:52:20.068 -07 000000486 INF: FPGA: Recv ZPIEZORD 31557
17-03-17 17:52:20.078 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:20.078 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.657 V. Piezo Error = -9.2 V.
17-03-17 17:52:20.078 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.7 um, Read 10 ADC samples: Avg = 35707 (-168.8 uncal um), Error = 0.9 uncal um, Median = 35708 (-168.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35696 (-168.8 uncal um), Max = 35712 (-168.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 17:52:20.078 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35707, posNoise = 5, negNoise = 11
17-03-17 17:52:20.078 -07 000000610 INF: Z Motor: After move to -0.169700, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:52:20.078 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 17:52:20.078 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:52:20.078 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:52:20.078 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:52:20.078 -07 000000626 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:52:20.078 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:52:20.078 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:52:20.078 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:52:20.078 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:52:20.078 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:52:20.078 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:52:20.078 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 17:52:20.078 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:52:20.088 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 17:52:20.088 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:52:20.088 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 17:52:20.088 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:52:20.098 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:52:20.098 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:52:20.098 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 17:52:20.098 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 17:52:20.098 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37248 150\n [Camera]
17-03-17 17:52:20.298 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:52:20.688 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:52:20.688 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:52:20.688 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:52:20.688 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:52:20.688 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:52:20.688 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:52:20.688 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:52:20.698 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 17:52:20.698 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:52:20.698 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 17:52:20.878 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37248 775
17-03-17 17:52:21.028 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:52:21.068 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 17:52:21.068 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 17:52:21.068 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:52:21.068 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 374 ms.
17-03-17 17:52:21.068 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 17:52:21.068 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:52:21.068 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:52:21.078 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:52:21.078 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 17:52:21.078 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 17:52:21.218 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:52:21.218 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:52:21.218 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:52:21.218 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:52:21.218 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:52:21.218 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:52:21.218 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:52:21.218 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2313256664, 0x0, 391868352) start.
17-03-17 17:52:21.338 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:52:21.338 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 2348678928, 0x0, 418435064) start.
17-03-17 17:52:21.408 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:52:21.408 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:52:21.408 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37248 150' command took 2 ms to send, 1306 ms to get response, and 1313 ms overall
17-03-17 17:52:21.408 -07 000000610 INF: Skipping AutoFocus in Tile 9: adopting Best-Z from the cache: -0.170002
17-03-17 17:52:21.408 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17000 mm
17-03-17 17:52:21.408 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:52:21.418 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 17:52:21.418 -07 000000424 INF: Y Motor: Moving to 66.5526 mm, started at 65.7148 mm, delta = 0.8378 mm
17-03-17 17:52:21.418 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:52:21.718 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 2348678928, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 17:52:21.718 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 17:52:21.718 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:52:21.718 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2313256664, 0x0, 391868352) end. Duration was 491 ms.
17-03-17 17:52:21.718 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 491 ms.
17-03-17 17:52:21.718 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:52:21.718 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:52:21.718 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:52:21.718 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 501 ms.
17-03-17 17:52:21.728 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 503 ms.
17-03-17 17:52:21.728 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 37137, sync = True, waitForSettling = False)
17-03-17 17:52:21.728 -07 000000551 INF: Z Motor: Moving to -0.170002 mm, started at -0.169713 mm, distance = -0.29 um
17-03-17 17:52:21.728 -07 000000551 INF: FPGA: Xmit ZDACW 37137\n [Z Motor]
17-03-17 17:52:21.738 -07 000000409 INF: FPGA: Recv YRDPOS 134584
17-03-17 17:52:21.738 -07 000000409 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:52:21.738 -07 000000409 INF: FPGA: Recv ZDACW
17-03-17 17:52:21.738 -07 000000551 INF: FPGA: 'ZDACW 37137' command took 0 ms to send, 2 ms to get response, and 4 ms overall
17-03-17 17:52:21.738 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 312 ms to get response, and 321 ms overall
17-03-17 17:52:21.738 -07 000000424 INF: Y Motor: Encoder = 134584 = motor step 105143.8 = 65.7148 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:52:21.738 -07 000000424 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:52:21.738 -07 000000424 INF: Y Motor: Moving 1340 steps-16
17-03-17 17:52:21.738 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 5. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=54, R2=62, Total=116. Warn if over 250 bubbles per interval.
17-03-17 17:52:21.738 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:52:21.738 -07 000000409 INF: FPGA: Recv ZDACR 37137
17-03-17 17:52:21.748 -07 000000551 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:52:21.748 -07 000000551 INF: Z Motor: MoveAbsStepped took 12 ms (did NOT wait for settling yet))
17-03-17 17:52:21.748 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:52:22.128 -07 000000409 INF: FPGA: Recv YMVTILE
17-03-17 17:52:22.128 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 387 ms overall
17-03-17 17:52:22.158 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:52:22.168 -07 000000409 INF: FPGA: Recv YRDPOS 136273
17-03-17 17:52:22.168 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 17:52:22.168 -07 000000424 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:52:22.168 -07 000000424 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 17:52:22.168 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.838 mm, average velocity = 2.159 mm/sec
17-03-17 17:52:22.908 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 6, FrontChillerTemperature: 3.941732,
17-03-17 17:52:23.118 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:52:23.118 -07 000000409 INF: FPGA: Recv YRDPOS 136273
17-03-17 17:52:23.128 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:52:23.128 -07 000000424 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:52:23.148 -07 000000424 INF: Y Motor: After move to 66.552605, error = -0.013054, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:52:23.148 -07 000000424 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:52:23.148 -07 000000424 INF: Y Motor: Moved to 66.5396 after 1729 ms (table move)
17-03-17 17:52:23.148 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.170002 mm (DAC = 37137)
17-03-17 17:52:23.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:23.148 -07 000000551 INF: FPGA: Recv ZSGSRD 35760
17-03-17 17:52:23.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:52:23.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:23.158 -07 000000486 INF: FPGA: Recv ZSGSRD 35750
17-03-17 17:52:23.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:23.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:23.168 -07 000000576 INF: FPGA: Recv ZSGSRD 35759
17-03-17 17:52:23.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:23.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:23.178 -07 000000424 INF: FPGA: Recv ZSGSRD 35752
17-03-17 17:52:23.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:23.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:23.188 -07 000000551 INF: FPGA: Recv ZSGSRD 35758
17-03-17 17:52:23.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:23.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:23.198 -07 000000424 INF: FPGA: Recv ZSGSRD 35758
17-03-17 17:52:23.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:23.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:23.208 -07 000000486 INF: FPGA: Recv ZSGSRD 35752
17-03-17 17:52:23.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:23.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:23.238 -07 000000551 INF: FPGA: Recv ZSGSRD 35752
17-03-17 17:52:23.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:52:23.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:23.248 -07 000000593 INF: FPGA: Recv ZSGSRD 35752
17-03-17 17:52:23.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:23.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:23.268 -07 000000551 INF: FPGA: Recv ZSGSRD 35758
17-03-17 17:52:23.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 7 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:52:23.298 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:52:23.298 -07 000000486 INF: FPGA: Recv ZPIEZORD 31618
17-03-17 17:52:23.308 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:52:23.308 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.667 V. Piezo Error = -9.1 V.
17-03-17 17:52:23.308 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.0 um, Read 10 ADC samples: Avg = 35755 (-169.1 uncal um), Error = 0.9 uncal um, Median = 35755 (-169.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35750 (-169.1 uncal um), Max = 35760 (-169.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:52:23.308 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35755, posNoise = 5, negNoise = 5
17-03-17 17:52:23.308 -07 000000610 INF: Z Motor: After move to -0.170002, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:52:23.308 -07 000000610 INF: Z Motor: Settle wait time = 1414 ms, measure time = 158 ms (allowed 150 ms), total time = 1572 ms
17-03-17 17:52:23.308 -07 000000610 INF: Z Motor: Warning: Actual position measuring time = 158 ms, longer than max expected time of 150 ms
17-03-17 17:52:23.308 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1891 ms
17-03-17 17:52:23.308 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:52:23.308 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53955078125, Z-position -0.170021057139798. ----------
17-03-17 17:52:23.308 -07 000000610 INF: Cycle	6	Tile	9	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:52:23.308 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36960, sync = True, waitForSettling = True)
17-03-17 17:52:23.308 -07 000000610 INF: Z Motor: Moving to -0.169192 mm, started at -0.170021 mm, distance = 0.83 um
17-03-17 17:52:23.308 -07 000000610 INF: FPGA: Xmit ZDACW 36960\n [Z Motor]
17-03-17 17:52:23.308 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 17:52:23.318 -07 000000610 INF: FPGA: 'ZDACW 36960' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 17:52:23.318 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:52:23.318 -07 000000486 INF: FPGA: Recv ZDACR 36960
17-03-17 17:52:23.328 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:23.328 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:52:23.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:23.478 -07 000000431 INF: FPGA: Recv ZSGSRD 35624
17-03-17 17:52:23.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:23.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:23.488 -07 000000486 INF: FPGA: Recv ZSGSRD 35628
17-03-17 17:52:23.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:23.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:23.498 -07 000000424 INF: FPGA: Recv ZSGSRD 35624
17-03-17 17:52:23.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:23.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:23.508 -07 000000593 INF: FPGA: Recv ZSGSRD 35633
17-03-17 17:52:23.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:23.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:23.518 -07 000000424 INF: FPGA: Recv ZSGSRD 35630
17-03-17 17:52:23.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:23.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:23.528 -07 000000486 INF: FPGA: Recv ZSGSRD 35628
17-03-17 17:52:23.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:23.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:23.538 -07 000000576 INF: FPGA: Recv ZSGSRD 35626
17-03-17 17:52:23.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:23.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:23.548 -07 000000551 INF: FPGA: Recv ZSGSRD 35622
17-03-17 17:52:23.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:23.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:23.558 -07 000000486 INF: FPGA: Recv ZSGSRD 35629
17-03-17 17:52:23.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:23.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:23.568 -07 000000551 INF: FPGA: Recv ZSGSRD 35625
17-03-17 17:52:23.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:23.578 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:52:23.578 -07 000000424 INF: FPGA: Recv ZPIEZORD 31435
17-03-17 17:52:23.588 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:23.588 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.640 V. Piezo Error = -9.2 V.
17-03-17 17:52:23.588 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.2 um, Read 10 ADC samples: Avg = 35627 (-168.3 uncal um), Error = 0.9 uncal um, Median = 35627 (-168.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35622 (-168.3 uncal um), Max = 35633 (-168.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:52:23.588 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35627, posNoise = 6, negNoise = 5
17-03-17 17:52:23.588 -07 000000610 INF: Z Motor: After move to -0.169192, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:52:23.588 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 17:52:23.588 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:52:23.588 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:52:23.588 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:52:23.588 -07 000000409 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:52:23.588 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:52:23.588 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:52:23.588 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:52:23.588 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:52:23.588 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:52:23.588 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:52:23.588 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:52:23.588 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:52:23.598 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:52:23.598 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:52:23.598 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:52:23.598 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:52:23.608 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 17:52:23.608 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 17:52:23.608 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 17:52:23.608 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 17:52:23.618 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37137 150\n [Camera]
17-03-17 17:52:23.808 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:52:24.208 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 17:52:24.208 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 17:52:24.208 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:52:24.208 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 17:52:24.208 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 17:52:24.208 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:52:24.208 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:52:24.208 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) start.
17-03-17 17:52:24.218 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:52:24.218 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 17:52:24.398 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37137 775
17-03-17 17:52:24.548 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:52:24.588 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 369 ms.
17-03-17 17:52:24.588 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 591793880, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 17:52:24.588 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 17:52:24.588 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:52:24.588 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-17 17:52:24.588 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:52:24.588 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:52:24.588 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 17:52:24.588 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:52:24.598 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 17:52:24.738 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:52:24.738 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:52:24.738 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:52:24.738 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:52:24.738 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:52:24.738 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:52:24.738 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:52:24.738 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 17:52:24.738 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:52:24.738 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 17:52:24.928 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:52:24.928 -07 000000409 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:52:24.928 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37137 150' command took 2 ms to send, 1303 ms to get response, and 1313 ms overall
17-03-17 17:52:24.928 -07 000000610 INF: Skipping AutoFocus in Tile 10: adopting Best-Z from the cache: -0.170033
17-03-17 17:52:24.928 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17003 mm
17-03-17 17:52:24.928 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:52:24.928 -07 000000409 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 17:52:24.928 -07 000000409 INF: Y Motor: Moving to 67.3826 mm, started at 66.5396 mm, delta = 0.8431 mm
17-03-17 17:52:24.928 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:52:25.118 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 17:52:25.118 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 17:52:25.118 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:52:25.118 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 17:52:25.118 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 17:52:25.118 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:52:25.118 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:52:25.118 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 17:52:25.118 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:52:25.128 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 17:52:25.128 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 37144, sync = True, waitForSettling = False)
17-03-17 17:52:25.128 -07 000000486 INF: Z Motor: Moving to -0.170034 mm, started at -0.169199 mm, distance = -0.84 um
17-03-17 17:52:25.128 -07 000000486 INF: FPGA: Xmit ZDACW 37144\n [Z Motor]
17-03-17 17:52:25.138 -07 000000424 INF: FPGA: Recv YRDPOS 136274
17-03-17 17:52:25.138 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 17:52:25.138 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 206 ms to get response, and 208 ms overall
17-03-17 17:52:25.138 -07 000000486 INF: FPGA: 'ZDACW 37144' command took 0 ms to send, 6 ms to get response, and 7 ms overall
17-03-17 17:52:25.138 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:52:25.138 -07 000000409 INF: Y Motor: Encoder = 136274 = motor step 106464.1 = 66.5400 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:52:25.148 -07 000000424 INF: FPGA: Recv ZDACR 37144
17-03-17 17:52:25.148 -07 000000486 INF: FPGA: 'ZDACR' command took 2 ms to send, 1 ms to get response, and 4 ms overall
17-03-17 17:52:25.148 -07 000000486 INF: Z Motor: MoveAbsStepped took 13 ms (did NOT wait for settling yet))
17-03-17 17:52:25.148 -07 000000409 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:52:25.148 -07 000000409 INF: Y Motor: Moving 1348 steps-27
17-03-17 17:52:25.148 -07 000000409 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:52:25.528 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-17 17:52:25.528 -07 000000409 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 372 ms to get response, and 379 ms overall
17-03-17 17:52:25.558 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:52:25.558 -07 000000486 INF: FPGA: Recv YRDPOS 137979
17-03-17 17:52:25.568 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:52:25.568 -07 000000409 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:52:25.568 -07 000000409 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-17 17:52:25.568 -07 000000409 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 379 ms, distance = 0.843 mm, average velocity = 2.224 mm/sec
17-03-17 17:52:26.518 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:52:26.518 -07 000000424 INF: FPGA: Recv YRDPOS 137979
17-03-17 17:52:26.528 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:52:26.528 -07 000000409 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:52:26.538 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:52:26.538 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 5. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=54, R2=62, Total=116. Warn if over 250 bubbles per interval.
17-03-17 17:52:26.548 -07 000000409 INF: Y Motor: After move to 67.382607, error = -0.010048, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:52:26.548 -07 000000409 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:52:26.548 -07 000000409 INF: Y Motor: Moved to 67.3726 after 1613 ms (table move)
17-03-17 17:52:26.548 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.170034 mm (DAC = 37144)
17-03-17 17:52:26.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:26.548 -07 000000424 INF: FPGA: Recv ZSGSRD 35760
17-03-17 17:52:26.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:52:26.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:26.558 -07 000000409 INF: FPGA: Recv ZSGSRD 35761
17-03-17 17:52:26.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:26.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:26.568 -07 000000409 INF: FPGA: Recv ZSGSRD 35759
17-03-17 17:52:26.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:26.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:26.578 -07 000000424 INF: FPGA: Recv ZSGSRD 35762
17-03-17 17:52:26.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:26.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:26.588 -07 000000424 INF: FPGA: Recv ZSGSRD 35763
17-03-17 17:52:26.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:26.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:26.598 -07 000000486 INF: FPGA: Recv ZSGSRD 35756
17-03-17 17:52:26.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:26.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:26.608 -07 000000486 INF: FPGA: Recv ZSGSRD 35760
17-03-17 17:52:26.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:26.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:26.618 -07 000000409 INF: FPGA: Recv ZSGSRD 35764
17-03-17 17:52:26.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:52:26.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:26.628 -07 000000409 INF: FPGA: Recv ZSGSRD 35762
17-03-17 17:52:26.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:26.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:26.638 -07 000000486 INF: FPGA: Recv ZSGSRD 35760
17-03-17 17:52:26.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:26.648 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:52:26.648 -07 000000486 INF: FPGA: Recv ZPIEZORD 31659
17-03-17 17:52:26.658 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:26.658 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.668 V. Piezo Error = -9.0 V.
17-03-17 17:52:26.658 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.0 um, Read 10 ADC samples: Avg = 35761 (-169.2 uncal um), Error = 0.8 uncal um, Median = 35760 (-169.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35756 (-169.2 uncal um), Max = 35764 (-169.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:52:26.658 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35761, posNoise = 3, negNoise = 5
17-03-17 17:52:26.658 -07 000000610 INF: Z Motor: After move to -0.170034, error = -0.000025, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:52:26.658 -07 000000610 INF: Z Motor: Settle wait time = 1415 ms, measure time = 107 ms (allowed 150 ms), total time = 1522 ms
17-03-17 17:52:26.658 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 17:52:26.708 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1773 ms
17-03-17 17:52:26.708 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:52:26.708 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37255859375, Z-position -0.170059602412649. ----------
17-03-17 17:52:26.708 -07 000000610 INF: Cycle	6	Tile	10	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:52:26.708 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36967, sync = True, waitForSettling = True)
17-03-17 17:52:26.708 -07 000000610 INF: Z Motor: Moving to -0.169224 mm, started at -0.170060 mm, distance = 0.84 um
17-03-17 17:52:26.708 -07 000000610 INF: FPGA: Xmit ZDACW 36967\n [Z Motor]
17-03-17 17:52:26.708 -07 000000409 INF: FPGA: Recv ZDACW
17-03-17 17:52:26.718 -07 000000610 INF: FPGA: 'ZDACW 36967' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 17:52:26.718 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:52:26.718 -07 000000424 INF: FPGA: Recv ZDACR 36967
17-03-17 17:52:26.728 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:26.728 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:52:26.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:26.878 -07 000000424 INF: FPGA: Recv ZSGSRD 35631
17-03-17 17:52:26.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:52:26.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:26.888 -07 000000547 INF: FPGA: Recv ZSGSRD 35633
17-03-17 17:52:26.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:26.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:26.898 -07 000000486 INF: FPGA: Recv ZSGSRD 35629
17-03-17 17:52:26.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:26.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:26.908 -07 000000424 INF: FPGA: Recv ZSGSRD 35637
17-03-17 17:52:26.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:26.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:26.918 -07 000000547 INF: FPGA: Recv ZSGSRD 35631
17-03-17 17:52:26.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:26.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:26.928 -07 000000409 INF: FPGA: Recv ZSGSRD 35629
17-03-17 17:52:26.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:26.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:26.938 -07 000000547 INF: FPGA: Recv ZSGSRD 35639
17-03-17 17:52:26.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:26.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:26.948 -07 000000547 INF: FPGA: Recv ZSGSRD 35635
17-03-17 17:52:26.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:26.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:26.958 -07 000000424 INF: FPGA: Recv ZSGSRD 35639
17-03-17 17:52:26.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:26.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:26.968 -07 000000547 INF: FPGA: Recv ZSGSRD 35629
17-03-17 17:52:26.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:26.978 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:52:26.978 -07 000000424 INF: FPGA: Recv ZPIEZORD 31452
17-03-17 17:52:26.988 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:26.988 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.641 V. Piezo Error = -9.2 V.
17-03-17 17:52:26.988 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.2 um, Read 10 ADC samples: Avg = 35633 (-168.4 uncal um), Error = 0.9 uncal um, Median = 35632 (-168.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35629 (-168.3 uncal um), Max = 35639 (-168.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:52:26.988 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35633, posNoise = 6, negNoise = 4
17-03-17 17:52:26.988 -07 000000610 INF: Z Motor: After move to -0.169224, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:52:26.988 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:52:26.988 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:52:26.988 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:52:26.988 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:52:26.988 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:52:26.988 -07 000000409 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:52:26.988 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:52:26.988 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:52:26.988 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:52:26.988 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:52:26.988 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:52:26.988 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:52:26.988 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:52:26.998 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 17:52:26.998 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:52:26.998 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:52:26.998 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:52:27.008 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 17:52:27.008 -07 000000409 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 17:52:27.008 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 17:52:27.008 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 17:52:27.018 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 37144 150\n [Camera]
17-03-17 17:52:27.208 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:52:27.608 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 585
17-03-17 17:52:27.608 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 585
17-03-17 17:52:27.608 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:52:27.608 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:52:27.608 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2239612688, 0x0, 391868352) start.
17-03-17 17:52:27.608 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 585
17-03-17 17:52:27.608 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 585
17-03-17 17:52:27.608 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:52:27.608 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:52:27.608 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 1048252464, 0x0, 418435064) start.
17-03-17 17:52:27.798 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37144 775
17-03-17 17:52:27.948 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:52:27.988 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 1048252464, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 17:52:27.988 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 17:52:27.988 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:52:27.988 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2239612688, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 17:52:27.988 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 17:52:27.988 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:52:27.988 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:52:27.988 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:52:27.988 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 17:52:27.998 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 17:52:28.138 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:52:28.138 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:52:28.138 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:52:28.138 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:52:28.138 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1083674728, 0x0, 391868352) start.
17-03-17 17:52:28.138 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:52:28.138 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:52:28.138 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:52:28.138 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:52:28.138 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1119096992, 0x0, 418435064) start.
17-03-17 17:52:28.278 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 6, FrontChillerTemperature: 3.906234,
17-03-17 17:52:28.328 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP 1307
17-03-17 17:52:28.328 -07 000000541 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:52:28.328 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 37144 150' command took 2 ms to send, 1304 ms to get response, and 1314 ms overall
17-03-17 17:52:28.328 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:52:28.328 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37255859375, Z-Position -0.169237303258503. ------
17-03-17 17:52:28.328 -07 000000547 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17555 mm
17-03-17 17:52:28.328 -07 000000547 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:52:28.328 -07 000000409 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:52:28.338 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:52:28.338 -07 000000541 INF: Z Motor: Entering MoveAbsStepped (DAC = 38348, sync = True, waitForSettling = False)
17-03-17 17:52:28.338 -07 000000541 INF: Z Motor: Moving to -0.175546 mm, started at -0.169237 mm, distance = -6.31 um
17-03-17 17:52:28.338 -07 000000433 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 17:52:28.338 -07 000000433 INF: Y Motor: Moving to 68.2126 mm, started at 67.3726 mm, delta = 0.8400 mm
17-03-17 17:52:28.348 -07 000000409 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:52:28.348 -07 000000541 INF: FPGA: Xmit ZDACW 38348\n [Z Motor]
17-03-17 17:52:28.348 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 17:52:28.358 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:52:28.358 -07 000000541 INF: FPGA: 'ZDACW 38348' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 17:52:28.358 -07 000000424 INF: FPGA: Recv YRDPOS 137979
17-03-17 17:52:28.368 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 17:52:28.368 -07 000000433 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:52:28.368 -07 000000433 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:52:28.368 -07 000000433 INF: Y Motor: Moving 1344 steps-21
17-03-17 17:52:28.368 -07 000000409 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:52:28.378 -07 000000541 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:52:28.378 -07 000000576 INF: FPGA: Recv ZDACR 38348
17-03-17 17:52:28.388 -07 000000433 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:52:28.388 -07 000000541 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:52:28.388 -07 000000541 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-17 17:52:28.518 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1119096992, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 17:52:28.518 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 17:52:28.518 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:52:28.518 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1083674728, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 17:52:28.518 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 17:52:28.518 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:52:28.528 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:52:28.528 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:52:28.528 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 17:52:28.528 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 17:52:28.568 -07 000000541 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:52:28.568 -07 000000409 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 223 ms overall
17-03-17 17:52:28.758 -07 000000486 INF: FPGA: Recv YMVTILE
17-03-17 17:52:28.768 -07 000000433 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 399 ms overall
17-03-17 17:52:28.798 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:52:28.798 -07 000000486 INF: FPGA: Recv YRDPOS 139685
17-03-17 17:52:28.808 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:52:28.808 -07 000000433 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:52:28.808 -07 000000433 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-17 17:52:28.808 -07 000000433 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.840 mm, average velocity = 2.105 mm/sec
17-03-17 17:52:29.758 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:52:29.758 -07 000000486 INF: FPGA: Recv YRDPOS 139685
17-03-17 17:52:29.768 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:29.768 -07 000000433 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:52:29.778 -07 000000433 INF: Y Motor: After move to 68.212608, error = -0.007042, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:52:29.778 -07 000000433 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:52:29.778 -07 000000433 INF: Y Motor: Moved to 68.2056 after 1443 ms (table move)
17-03-17 17:52:29.788 -07 000000547 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175546 mm (DAC = 38348)
17-03-17 17:52:29.788 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:29.788 -07 000000433 INF: FPGA: Recv ZSGSRD 36623
17-03-17 17:52:29.798 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:52:29.798 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:29.798 -07 000000433 INF: FPGA: Recv ZSGSRD 36619
17-03-17 17:52:29.808 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:52:29.808 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:29.808 -07 000000486 INF: FPGA: Recv ZSGSRD 36620
17-03-17 17:52:29.818 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:29.818 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:29.818 -07 000000433 INF: FPGA: Recv ZSGSRD 36620
17-03-17 17:52:29.828 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:29.828 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:29.828 -07 000000486 INF: FPGA: Recv ZSGSRD 36619
17-03-17 17:52:29.838 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:29.838 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:29.838 -07 000000486 INF: FPGA: Recv ZSGSRD 36621
17-03-17 17:52:29.848 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:29.848 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:29.848 -07 000000486 INF: FPGA: Recv ZSGSRD 36612
17-03-17 17:52:29.858 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:29.858 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:29.858 -07 000000486 INF: FPGA: Recv ZSGSRD 36611
17-03-17 17:52:29.868 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:29.868 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:29.868 -07 000000433 INF: FPGA: Recv ZSGSRD 36617
17-03-17 17:52:29.878 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:29.878 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:29.878 -07 000000486 INF: FPGA: Recv ZSGSRD 36614
17-03-17 17:52:29.888 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:29.888 -07 000000547 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:52:29.888 -07 000000433 INF: FPGA: Recv ZPIEZORD 32809
17-03-17 17:52:29.898 -07 000000547 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:29.898 -07 000000547 INF: Z Motor: Piezo is near 50.1 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.852 V. Piezo Error = -8.4 V.
17-03-17 17:52:29.898 -07 000000547 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.5 um, Read 10 ADC samples: Avg = 36618 (-174.7 uncal um), Error = 0.9 uncal um, Median = 36619 (-174.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36611 (-174.6 uncal um), Max = 36623 (-174.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 17:52:29.898 -07 000000547 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36618, posNoise = 5, negNoise = 7
17-03-17 17:52:29.898 -07 000000547 INF: Z Motor: After move to -0.175546, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:52:29.898 -07 000000547 INF: Z Motor: Settle wait time = 1447 ms, measure time = 108 ms (allowed 150 ms), total time = 1555 ms
17-03-17 17:52:29.898 -07 000000547 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 17:52:29.948 -07 000000547 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1610 ms
17-03-17 17:52:29.948 -07 000000547 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:52:29.948 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:52:29.948 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:52:29.948 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:52:29.948 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:52:29.948 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:52:29.948 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:52:29.948 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:52:29.948 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:52:29.958 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:52:29.958 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:52:29.958 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 17:52:29.958 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 17:52:29.968 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:52:30.008 -07 000000433 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:52:30.208 -07 000000433 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:52:30.208 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:52:30.208 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:52:30.208 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2298580584, 0x0, 559484976) start.
17-03-17 17:52:30.248 -07 000000547 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:52:30.248 -07 000000433 INF: FPGA: Recv CAMSNAP
17-03-17 17:52:30.248 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 17:52:30.328 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2298580584, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 17:52:30.328 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:52:30.328 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:52:30.328 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-17 17:52:30.348 -07 000000433 INF: Autofocus start
17-03-17 17:52:30.348 -07 000000433 INF: MeasureProfile start
17-03-17 17:52:30.348 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:52:30.348 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:52:30.358 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 2 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:52:30.358 -07 000000486 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:52:30.368 -07 000000433 INF: MeasureProfile done
17-03-17 17:52:30.368 -07 000000433 INF: X=-80  Z correction [um]=-0.4885566
17-03-17 17:52:30.368 -07 000000433 INF: Autofocus finished
17-03-17 17:52:30.558 -07 000000433 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:52:30.558 -07 000000486 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:52:30.558 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20556640625, Z-position -0.175565152218138. ----------
17-03-17 17:52:30.558 -07 000000610 INF: Cycle	6	Tile	11	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:52:30.568 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36754, sync = True, waitForSettling = True)
17-03-17 17:52:30.568 -07 000000610 INF: Z Motor: Moving to -0.168249 mm, started at -0.175565 mm, distance = 7.32 um
17-03-17 17:52:30.568 -07 000000610 INF: FPGA: Xmit ZDACW 36754\n [Z Motor]
17-03-17 17:52:30.568 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 17:52:30.578 -07 000000610 INF: FPGA: 'ZDACW 36754' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:52:30.578 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:52:30.578 -07 000000409 INF: FPGA: Recv ZDACR 36754
17-03-17 17:52:30.588 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:30.588 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:52:30.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:30.738 -07 000000429 INF: FPGA: Recv ZSGSRD 35481
17-03-17 17:52:30.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:52:30.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:30.748 -07 000000547 INF: FPGA: Recv ZSGSRD 35484
17-03-17 17:52:30.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:30.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:30.758 -07 000000541 INF: FPGA: Recv ZSGSRD 35483
17-03-17 17:52:30.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:30.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:30.768 -07 000000409 INF: FPGA: Recv ZSGSRD 35473
17-03-17 17:52:30.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:30.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:30.778 -07 000000433 INF: FPGA: Recv ZSGSRD 35489
17-03-17 17:52:30.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:30.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:30.788 -07 000000593 INF: FPGA: Recv ZSGSRD 35484
17-03-17 17:52:30.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:30.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:30.798 -07 000000541 INF: FPGA: Recv ZSGSRD 35480
17-03-17 17:52:30.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:30.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:30.808 -07 000000424 INF: FPGA: Recv ZSGSRD 35477
17-03-17 17:52:30.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:30.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:30.818 -07 000000433 INF: FPGA: Recv ZSGSRD 35479
17-03-17 17:52:30.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:30.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:30.828 -07 000000409 INF: FPGA: Recv ZSGSRD 35480
17-03-17 17:52:30.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:30.838 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:52:30.838 -07 000000486 INF: FPGA: Recv ZPIEZORD 31270
17-03-17 17:52:30.848 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:30.848 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.608 V. Piezo Error = -9.3 V.
17-03-17 17:52:30.848 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.2 um, Read 10 ADC samples: Avg = 35481 (-167.4 uncal um), Error = 0.9 uncal um, Median = 35480 (-167.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35473 (-167.3 uncal um), Max = 35489 (-167.4 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 17:52:30.848 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35481, posNoise = 8, negNoise = 8
17-03-17 17:52:30.848 -07 000000610 INF: Z Motor: After move to -0.168249, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:52:30.848 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 17:52:30.848 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:52:30.848 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:52:30.848 -07 000000409 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:52:30.848 -07 000000424 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:52:30.848 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:52:30.848 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:52:30.848 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:52:30.848 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:52:30.848 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 17:52:30.848 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-17 17:52:30.848 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:52:30.848 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:52:30.858 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:52:30.858 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:52:30.858 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 17:52:30.858 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:52:30.868 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 17:52:30.868 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 17:52:30.868 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:52:30.868 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 17:52:30.868 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36931 150\n [Camera]
17-03-17 17:52:31.068 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:52:31.458 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:52:31.458 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:52:31.458 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:52:31.458 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:52:31.458 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 17:52:31.458 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:52:31.458 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:52:31.458 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:52:31.458 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:52:31.458 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 17:52:31.538 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:52:31.538 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 5. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=54, R2=62, Total=116. Warn if over 250 bubbles per interval.
17-03-17 17:52:31.648 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36931 775
17-03-17 17:52:31.798 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:52:31.838 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 17:52:31.838 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 17:52:31.838 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:52:31.838 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 17:52:31.838 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 17:52:31.838 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:52:31.838 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:52:31.848 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 17:52:31.848 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:52:31.848 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 17:52:31.988 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:52:31.988 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:52:31.988 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:52:31.988 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:52:31.988 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 17:52:31.988 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:52:31.988 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:52:31.998 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:52:31.998 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:52:31.998 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 17:52:32.178 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:52:32.178 -07 000000593 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:52:32.178 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36931 150' command took 2 ms to send, 1308 ms to get response, and 1312 ms overall
17-03-17 17:52:32.188 -07 000000610 INF: Skipping AutoFocus in Tile 12: adopting Best-Z from the cache: -0.168805
17-03-17 17:52:32.188 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.16881 mm
17-03-17 17:52:32.188 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:52:32.188 -07 000000433 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 17:52:32.188 -07 000000433 INF: Y Motor: Moving to 69.0426 mm, started at 68.2056 mm, delta = 0.8370 mm
17-03-17 17:52:32.188 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:52:32.188 -07 000000547 INF: Z Motor: Entering MoveAbsStepped (DAC = 36876, sync = True, waitForSettling = False)
17-03-17 17:52:32.188 -07 000000547 INF: Z Motor: Moving to -0.168808 mm, started at -0.168261 mm, distance = -0.55 um
17-03-17 17:52:32.188 -07 000000593 INF: FPGA: Recv YRDPOS 139686
17-03-17 17:52:32.198 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:52:32.198 -07 000000433 INF: Y Motor: Encoder = 139686 = motor step 109129.7 = 68.2061 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:52:32.198 -07 000000547 INF: FPGA: Xmit ZDACW 36876\n [Z Motor]
17-03-17 17:52:32.198 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 17:52:32.198 -07 000000433 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:52:32.198 -07 000000433 INF: Y Motor: Moving 1338 steps-14
17-03-17 17:52:32.208 -07 000000547 INF: FPGA: 'ZDACW 36876' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 17:52:32.208 -07 000000433 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:52:32.218 -07 000000547 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:52:32.218 -07 000000593 INF: FPGA: Recv ZDACR 36876
17-03-17 17:52:32.228 -07 000000547 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:52:32.228 -07 000000547 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-17 17:52:32.378 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 17:52:32.378 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 17:52:32.378 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:52:32.378 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 17:52:32.378 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 17:52:32.378 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:52:32.378 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:52:32.378 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 17:52:32.378 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 17:52:32.388 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 17:52:32.578 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-17 17:52:32.578 -07 000000433 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-17 17:52:32.618 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:52:32.618 -07 000000486 INF: FPGA: Recv YRDPOS 141368
17-03-17 17:52:32.628 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:52:32.628 -07 000000433 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:52:32.628 -07 000000433 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 17:52:32.628 -07 000000433 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.837 mm, average velocity = 2.174 mm/sec
17-03-17 17:52:33.578 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:52:33.578 -07 000000429 INF: FPGA: Recv YRDPOS 141369
17-03-17 17:52:33.588 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:52:33.588 -07 000000433 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:52:33.608 -07 000000433 INF: Y Motor: After move to 69.042610, error = -0.014778, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:52:33.608 -07 000000433 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 17:52:33.608 -07 000000433 INF: Y Motor: Moved to 69.0278 after 1417 ms (table move)
17-03-17 17:52:33.608 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.168808 mm (DAC = 36876)
17-03-17 17:52:33.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:33.608 -07 000000433 INF: FPGA: Recv ZSGSRD 35569
17-03-17 17:52:33.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:52:33.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:33.618 -07 000000433 INF: FPGA: Recv ZSGSRD 35570
17-03-17 17:52:33.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:33.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:33.628 -07 000000433 INF: FPGA: Recv ZSGSRD 35562
17-03-17 17:52:33.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:33.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:33.648 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 6, FrontChillerTemperature: 3.891186,
17-03-17 17:52:33.648 -07 000000593 INF: FPGA: Recv ZSGSRD 35576
17-03-17 17:52:33.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:52:33.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:33.688 -07 000000593 INF: FPGA: Recv ZSGSRD 35565
17-03-17 17:52:33.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-17 17:52:33.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:33.718 -07 000000541 INF: FPGA: Recv ZSGSRD 35566
17-03-17 17:52:33.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:52:33.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:33.728 -07 000000541 INF: FPGA: Recv ZSGSRD 35559
17-03-17 17:52:33.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:33.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:33.738 -07 000000576 INF: FPGA: Recv ZSGSRD 35570
17-03-17 17:52:33.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:33.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:33.748 -07 000000576 INF: FPGA: Recv ZSGSRD 35571
17-03-17 17:52:33.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:33.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:33.758 -07 000000541 INF: FPGA: Recv ZSGSRD 35565
17-03-17 17:52:33.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:33.768 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:52:33.768 -07 000000541 INF: FPGA: Recv ZPIEZORD 31443
17-03-17 17:52:33.778 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:33.778 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.627 V. Piezo Error = -9.1 V.
17-03-17 17:52:33.778 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.8 um, Read 10 ADC samples: Avg = 35567 (-167.9 uncal um), Error = 0.9 uncal um, Median = 35568 (-167.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 35559 (-167.9 uncal um), Max = 35576 (-168.0 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 17:52:33.778 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35567, posNoise = 9, negNoise = 8
17-03-17 17:52:33.778 -07 000000610 INF: Z Motor: After move to -0.168808, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:52:33.778 -07 000000610 INF: Z Motor: Settle wait time = 1418 ms, measure time = 167 ms (allowed 150 ms), total time = 1585 ms
17-03-17 17:52:33.778 -07 000000610 INF: Z Motor: Warning: Actual position measuring time = 167 ms, longer than max expected time of 150 ms
17-03-17 17:52:33.778 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1588 ms
17-03-17 17:52:33.778 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:52:33.778 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02783203125, Z-position -0.168813305257147. ----------
17-03-17 17:52:33.778 -07 000000610 INF: Cycle	6	Tile	12	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:52:33.778 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36699, sync = True, waitForSettling = True)
17-03-17 17:52:33.778 -07 000000610 INF: Z Motor: Moving to -0.167997 mm, started at -0.168813 mm, distance = 0.82 um
17-03-17 17:52:33.778 -07 000000610 INF: FPGA: Xmit ZDACW 36699\n [Z Motor]
17-03-17 17:52:33.788 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 17:52:33.788 -07 000000610 INF: FPGA: 'ZDACW 36699' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 17:52:33.788 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:52:33.788 -07 000000593 INF: FPGA: Recv ZDACR 36699
17-03-17 17:52:33.798 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:33.798 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:52:33.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:33.948 -07 000000541 INF: FPGA: Recv ZSGSRD 35444
17-03-17 17:52:33.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:52:33.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:33.958 -07 000000593 INF: FPGA: Recv ZSGSRD 35438
17-03-17 17:52:33.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:33.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:33.968 -07 000000593 INF: FPGA: Recv ZSGSRD 35447
17-03-17 17:52:33.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:33.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:33.978 -07 000000541 INF: FPGA: Recv ZSGSRD 35443
17-03-17 17:52:33.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:33.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:33.998 -07 000000593 INF: FPGA: Recv ZSGSRD 35444
17-03-17 17:52:34.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:52:34.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:34.008 -07 000000541 INF: FPGA: Recv ZSGSRD 35443
17-03-17 17:52:34.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:34.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:34.028 -07 000000593 INF: FPGA: Recv ZSGSRD 35437
17-03-17 17:52:34.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:52:34.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:34.038 -07 000000541 INF: FPGA: Recv ZSGSRD 35440
17-03-17 17:52:34.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:34.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:34.058 -07 000000541 INF: FPGA: Recv ZSGSRD 35443
17-03-17 17:52:34.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:52:34.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:34.068 -07 000000576 INF: FPGA: Recv ZSGSRD 35441
17-03-17 17:52:34.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:34.098 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:52:34.098 -07 000000576 INF: FPGA: Recv ZPIEZORD 31231
17-03-17 17:52:34.108 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:52:34.108 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.600 V. Piezo Error = -9.3 V.
17-03-17 17:52:34.108 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.0 um, Read 10 ADC samples: Avg = 35442 (-167.1 uncal um), Error = 0.9 uncal um, Median = 35443 (-167.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35437 (-167.1 uncal um), Max = 35447 (-167.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:52:34.108 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35442, posNoise = 5, negNoise = 5
17-03-17 17:52:34.108 -07 000000610 INF: Z Motor: After move to -0.167997, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:52:34.108 -07 000000610 INF: Z Motor: MoveAbsStepped took 323 ms)
17-03-17 17:52:34.108 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:52:34.108 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:52:34.108 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:52:34.108 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:52:34.108 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:52:34.108 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:52:34.108 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:52:34.108 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:52:34.108 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:52:34.108 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:52:34.108 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:52:34.108 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:52:34.118 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:52:34.118 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:52:34.118 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 17:52:34.118 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:52:34.128 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 17:52:34.128 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 17:52:34.128 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 17:52:34.128 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 17:52:34.138 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36876 150\n [Camera]
17-03-17 17:52:34.338 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:52:34.728 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:52:34.728 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:52:34.728 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:52:34.728 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:52:34.728 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 17:52:34.728 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:52:34.728 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:52:34.728 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:52:34.738 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:52:34.738 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 17:52:34.918 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36876 775
17-03-17 17:52:35.068 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:52:35.098 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 17:52:35.098 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-17 17:52:35.098 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:52:35.108 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:52:35.108 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 17:52:35.108 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 369 ms.
17-03-17 17:52:35.108 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-17 17:52:35.108 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:52:35.118 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:52:35.118 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 17:52:35.258 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:52:35.258 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:52:35.258 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:52:35.258 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:52:35.258 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:52:35.258 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:52:35.258 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:52:35.258 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 17:52:35.268 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:52:35.268 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 17:52:35.448 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:52:35.448 -07 000000482 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:52:35.448 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36876 150' command took 2 ms to send, 1303 ms to get response, and 1312 ms overall
17-03-17 17:52:35.448 -07 000000610 INF: Skipping AutoFocus in Tile 13: adopting Best-Z from the cache: -0.168429
17-03-17 17:52:35.448 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.16843 mm
17-03-17 17:52:35.448 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:52:35.448 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 17:52:35.448 -07 000000541 INF: Y Motor: Moving to 69.8726 mm, started at 69.0278 mm, delta = 0.8448 mm
17-03-17 17:52:35.448 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:52:35.448 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 36793, sync = True, waitForSettling = False)
17-03-17 17:52:35.448 -07 000000551 INF: Z Motor: Moving to -0.168428 mm, started at -0.168010 mm, distance = -0.42 um
17-03-17 17:52:35.458 -07 000000551 INF: FPGA: Xmit ZDACW 36793\n [Z Motor]
17-03-17 17:52:35.458 -07 000000482 INF: FPGA: Recv YRDPOS 141369
17-03-17 17:52:35.458 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 17:52:35.458 -07 000000541 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:52:35.458 -07 000000541 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:52:35.458 -07 000000541 INF: Y Motor: Moving 1352 steps-31
17-03-17 17:52:35.458 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 17:52:35.468 -07 000000551 INF: FPGA: 'ZDACW 36793' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 17:52:35.468 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:52:35.468 -07 000000576 INF: FPGA: Recv ZDACR 36793
17-03-17 17:52:35.478 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:52:35.478 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:35.478 -07 000000551 INF: Z Motor: MoveAbsStepped took 21 ms (did NOT wait for settling yet))
17-03-17 17:52:35.648 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 17:52:35.648 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 17:52:35.658 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:52:35.658 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 390 ms.
17-03-17 17:52:35.658 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 17:52:35.658 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:52:35.658 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:52:35.658 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 17:52:35.658 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:52:35.668 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 17:52:35.848 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-17 17:52:35.848 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 17:52:35.878 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:52:35.888 -07 000000593 INF: FPGA: Recv YRDPOS 143081
17-03-17 17:52:35.898 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:52:35.898 -07 000000541 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:52:35.898 -07 000000541 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 17:52:35.898 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.845 mm, average velocity = 2.144 mm/sec
17-03-17 17:52:36.538 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:52:36.538 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 5. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=54, R2=62, Total=116. Warn if over 250 bubbles per interval.
17-03-17 17:52:36.848 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:52:36.848 -07 000000424 INF: FPGA: Recv YRDPOS 143081
17-03-17 17:52:36.858 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:52:36.858 -07 000000541 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:52:36.878 -07 000000541 INF: Y Motor: After move to 69.872612, error = -0.008842, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:52:36.878 -07 000000541 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:52:36.878 -07 000000541 INF: Y Motor: Moved to 69.8638 after 1423 ms (table move)
17-03-17 17:52:36.878 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.168428 mm (DAC = 36793)
17-03-17 17:52:36.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:36.878 -07 000000486 INF: FPGA: Recv ZSGSRD 35507
17-03-17 17:52:36.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:52:36.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:36.888 -07 000000482 INF: FPGA: Recv ZSGSRD 35505
17-03-17 17:52:36.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:36.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:36.898 -07 000000409 INF: FPGA: Recv ZSGSRD 35506
17-03-17 17:52:36.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:36.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:36.908 -07 000000541 INF: FPGA: Recv ZSGSRD 35512
17-03-17 17:52:36.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:36.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:36.918 -07 000000626 INF: FPGA: Recv ZSGSRD 35511
17-03-17 17:52:36.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:36.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:36.928 -07 000000482 INF: FPGA: Recv ZSGSRD 35504
17-03-17 17:52:36.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:36.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:36.938 -07 000000409 INF: FPGA: Recv ZSGSRD 35508
17-03-17 17:52:36.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:36.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:36.948 -07 000000433 INF: FPGA: Recv ZSGSRD 35499
17-03-17 17:52:36.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:36.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:36.958 -07 000000551 INF: FPGA: Recv ZSGSRD 35507
17-03-17 17:52:36.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:36.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:36.968 -07 000000486 INF: FPGA: Recv ZSGSRD 35506
17-03-17 17:52:36.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:36.978 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:52:36.978 -07 000000547 INF: FPGA: Recv ZPIEZORD 31343
17-03-17 17:52:36.988 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:36.988 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.614 V. Piezo Error = -9.2 V.
17-03-17 17:52:36.988 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.4 um, Read 10 ADC samples: Avg = 35506 (-167.6 uncal um), Error = 0.9 uncal um, Median = 35506 (-167.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35499 (-167.5 uncal um), Max = 35512 (-167.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 17:52:36.988 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35506, posNoise = 6, negNoise = 7
17-03-17 17:52:36.988 -07 000000610 INF: Z Motor: After move to -0.168428, error = 0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:52:36.988 -07 000000610 INF: Z Motor: Settle wait time = 1425 ms, measure time = 106 ms (allowed 150 ms), total time = 1531 ms
17-03-17 17:52:36.988 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 17:52:37.038 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1583 ms
17-03-17 17:52:37.038 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:52:37.038 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86376953125, Z-position -0.1684214283165. ----------
17-03-17 17:52:37.038 -07 000000610 INF: Cycle	6	Tile	13	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:52:37.038 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36617, sync = True, waitForSettling = True)
17-03-17 17:52:37.038 -07 000000610 INF: Z Motor: Moving to -0.167622 mm, started at -0.168421 mm, distance = 0.80 um
17-03-17 17:52:37.038 -07 000000610 INF: FPGA: Xmit ZDACW 36617\n [Z Motor]
17-03-17 17:52:37.038 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 17:52:37.048 -07 000000610 INF: FPGA: 'ZDACW 36617' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 17:52:37.048 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:52:37.048 -07 000000541 INF: FPGA: Recv ZDACR 36617
17-03-17 17:52:37.058 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:37.058 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:52:37.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:37.208 -07 000000551 INF: FPGA: Recv ZSGSRD 35390
17-03-17 17:52:37.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:52:37.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:37.218 -07 000000593 INF: FPGA: Recv ZSGSRD 35389
17-03-17 17:52:37.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:37.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:37.228 -07 000000424 INF: FPGA: Recv ZSGSRD 35375
17-03-17 17:52:37.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:37.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:37.238 -07 000000541 INF: FPGA: Recv ZSGSRD 35380
17-03-17 17:52:37.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:37.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:37.248 -07 000000551 INF: FPGA: Recv ZSGSRD 35383
17-03-17 17:52:37.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:37.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:37.258 -07 000000593 INF: FPGA: Recv ZSGSRD 35382
17-03-17 17:52:37.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:52:37.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:37.268 -07 000000424 INF: FPGA: Recv ZSGSRD 35384
17-03-17 17:52:37.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:37.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:37.278 -07 000000429 INF: FPGA: Recv ZSGSRD 35378
17-03-17 17:52:37.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:37.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:37.288 -07 000000459 INF: FPGA: Recv ZSGSRD 35378
17-03-17 17:52:37.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:37.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:37.298 -07 000000486 INF: FPGA: Recv ZSGSRD 35391
17-03-17 17:52:37.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:37.308 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:52:37.308 -07 000000551 INF: FPGA: Recv ZPIEZORD 31144
17-03-17 17:52:37.318 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:37.318 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.587 V. Piezo Error = -9.3 V.
17-03-17 17:52:37.318 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.6 um, Read 10 ADC samples: Avg = 35383 (-166.8 uncal um), Error = 0.9 uncal um, Median = 35382 (-166.8 uncal um), StdDev = 6 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35375 (-166.7 uncal um), Max = 35391 (-166.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 17:52:37.318 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35383, posNoise = 8, negNoise = 8
17-03-17 17:52:37.318 -07 000000610 INF: Z Motor: After move to -0.167622, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:52:37.318 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 17:52:37.318 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:52:37.318 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:52:37.318 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:52:37.318 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:52:37.318 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:52:37.318 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:52:37.318 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:52:37.318 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:52:37.318 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:52:37.318 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:52:37.318 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:52:37.318 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:52:37.328 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:52:37.328 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:52:37.328 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:52:37.328 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:52:37.338 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-17 17:52:37.338 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 17:52:37.338 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-17 17:52:37.338 -07 000000626 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 17:52:37.338 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36793 150\n [Camera]
17-03-17 17:52:37.538 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:52:37.928 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 583
17-03-17 17:52:37.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 583
17-03-17 17:52:37.928 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:52:37.938 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 583
17-03-17 17:52:37.938 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 583
17-03-17 17:52:37.938 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:52:38.048 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:52:38.048 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2298580584, 0x0, 391868352) start.
17-03-17 17:52:38.048 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:52:38.048 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 17:52:38.118 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36793 775
17-03-17 17:52:38.268 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:52:38.418 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2298580584, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 17:52:38.418 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-17 17:52:38.418 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:52:38.418 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 17:52:38.428 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 17:52:38.428 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:52:38.428 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:52:38.428 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 492 ms.
17-03-17 17:52:38.428 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:52:38.438 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 498 ms.
17-03-17 17:52:38.458 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:52:38.458 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:52:38.458 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:52:38.468 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:52:38.468 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:52:38.468 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:52:38.468 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:52:38.468 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 17:52:38.468 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:52:38.468 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 17:52:38.838 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 17:52:38.838 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 17:52:38.838 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:52:38.848 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 17:52:38.848 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 17:52:38.848 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:52:38.848 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:52:38.848 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 17:52:38.848 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:52:38.858 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 17:52:38.858 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:52:38.858 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:52:38.858 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36793 150' command took 2 ms to send, 1515 ms to get response, and 1518 ms overall
17-03-17 17:52:38.858 -07 000000610 INF: Skipping AutoFocus in Tile 14: adopting Best-Z from the cache: -0.168131
17-03-17 17:52:38.858 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.16813 mm
17-03-17 17:52:38.858 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:52:38.868 -07 000000626 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 17:52:38.868 -07 000000626 INF: Y Motor: Moving to 70.7026 mm, started at 69.8638 mm, delta = 0.8388 mm
17-03-17 17:52:38.868 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:52:38.868 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 36728, sync = True, waitForSettling = False)
17-03-17 17:52:38.868 -07 000000551 INF: Z Motor: Moving to -0.168130 mm, started at -0.167631 mm, distance = -0.50 um
17-03-17 17:52:38.878 -07 000000551 INF: FPGA: Xmit ZDACW 36728\n [Z Motor]
17-03-17 17:52:39.758 -07 000000429 INF: FPGA: Recv YRDPOS 143081
17-03-17 17:52:39.758 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 17:52:39.758 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 880 ms to get response, and 889 ms overall
17-03-17 17:52:39.758 -07 000000626 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:52:39.758 -07 000000551 INF: FPGA: 'ZDACW 36728' command took 0 ms to send, 870 ms to get response, and 886 ms overall
17-03-17 17:52:39.758 -07 000000626 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:52:39.758 -07 000000626 INF: Y Motor: Moving 1342 steps-18
17-03-17 17:52:39.758 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 6, FrontChillerTemperature: 3.913061,
17-03-17 17:52:39.778 -07 000000626 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:52:39.788 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:52:39.788 -07 000000541 INF: FPGA: Recv ZDACR 36728
17-03-17 17:52:39.798 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 38 ms overall
17-03-17 17:52:39.798 -07 000000551 INF: Z Motor: MoveAbsStepped took 926 ms (did NOT wait for settling yet))
17-03-17 17:52:40.148 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 17:52:40.148 -07 000000626 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 396 ms overall
17-03-17 17:52:40.188 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:52:40.188 -07 000000482 INF: FPGA: Recv YRDPOS 144771
17-03-17 17:52:40.198 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:52:40.198 -07 000000626 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:52:40.198 -07 000000626 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 17:52:40.198 -07 000000626 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.839 mm, average velocity = 2.118 mm/sec
17-03-17 17:52:41.148 -07 000000626 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:52:41.148 -07 000000424 INF: FPGA: Recv YRDPOS 144771
17-03-17 17:52:41.158 -07 000000626 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:52:41.158 -07 000000626 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:52:41.168 -07 000000626 INF: Y Motor: After move to 70.702606, error = -0.013641, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:52:41.168 -07 000000626 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:52:41.168 -07 000000626 INF: Y Motor: Moved to 70.6890 after 2307 ms (table move)
17-03-17 17:52:41.178 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.168130 mm (DAC = 36728)
17-03-17 17:52:41.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:41.178 -07 000000424 INF: FPGA: Recv ZSGSRD 35463
17-03-17 17:52:41.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:52:41.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:41.188 -07 000000626 INF: FPGA: Recv ZSGSRD 35457
17-03-17 17:52:41.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:41.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:41.198 -07 000000424 INF: FPGA: Recv ZSGSRD 35463
17-03-17 17:52:41.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:41.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:41.208 -07 000000626 INF: FPGA: Recv ZSGSRD 35461
17-03-17 17:52:41.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:41.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:41.218 -07 000000424 INF: FPGA: Recv ZSGSRD 35465
17-03-17 17:52:41.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:41.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:41.228 -07 000000626 INF: FPGA: Recv ZSGSRD 35466
17-03-17 17:52:41.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:41.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:41.238 -07 000000541 INF: FPGA: Recv ZSGSRD 35459
17-03-17 17:52:41.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:41.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:41.248 -07 000000424 INF: FPGA: Recv ZSGSRD 35462
17-03-17 17:52:41.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:41.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:41.258 -07 000000431 INF: FPGA: Recv ZSGSRD 35463
17-03-17 17:52:41.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:41.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:41.268 -07 000000541 INF: FPGA: Recv ZSGSRD 35460
17-03-17 17:52:41.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:52:41.278 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:52:41.278 -07 000000626 INF: FPGA: Recv ZPIEZORD 31263
17-03-17 17:52:41.288 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:41.288 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.604 V. Piezo Error = -9.3 V.
17-03-17 17:52:41.288 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.1 um, Read 10 ADC samples: Avg = 35462 (-167.3 uncal um), Error = 0.9 uncal um, Median = 35462 (-167.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35457 (-167.2 uncal um), Max = 35466 (-167.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:52:41.288 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35462, posNoise = 4, negNoise = 5
17-03-17 17:52:41.288 -07 000000610 INF: Z Motor: After move to -0.168130, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:52:41.288 -07 000000610 INF: Z Motor: Settle wait time = 2307 ms, measure time = 109 ms (allowed 150 ms), total time = 2416 ms
17-03-17 17:52:41.288 -07 000000610 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 17:52:41.338 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2472 ms
17-03-17 17:52:41.338 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:52:41.338 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68896484375, Z-position -0.168138762982262. ----------
17-03-17 17:52:41.338 -07 000000610 INF: Cycle	6	Tile	14	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:52:41.338 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36551, sync = True, waitForSettling = True)
17-03-17 17:52:41.338 -07 000000610 INF: Z Motor: Moving to -0.167320 mm, started at -0.168139 mm, distance = 0.82 um
17-03-17 17:52:41.338 -07 000000610 INF: FPGA: Xmit ZDACW 36551\n [Z Motor]
17-03-17 17:52:41.338 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 17:52:41.348 -07 000000610 INF: FPGA: 'ZDACW 36551' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:52:41.348 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:52:41.348 -07 000000482 INF: FPGA: Recv ZDACR 36551
17-03-17 17:52:41.358 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:41.358 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:52:41.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:41.508 -07 000000431 INF: FPGA: Recv ZSGSRD 35338
17-03-17 17:52:41.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:41.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:41.518 -07 000000482 INF: FPGA: Recv ZSGSRD 35333
17-03-17 17:52:41.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:41.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:41.528 -07 000000551 INF: FPGA: Recv ZSGSRD 35339
17-03-17 17:52:41.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:41.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:41.538 -07 000000424 INF: FPGA: Recv ZSGSRD 35337
17-03-17 17:52:41.538 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:52:41.538 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 5. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=54, R2=62, Total=116. Warn if over 250 bubbles per interval.
17-03-17 17:52:41.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:41.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:41.548 -07 000000431 INF: FPGA: Recv ZSGSRD 35338
17-03-17 17:52:41.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:41.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:41.558 -07 000000541 INF: FPGA: Recv ZSGSRD 35333
17-03-17 17:52:41.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:41.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:41.568 -07 000000551 INF: FPGA: Recv ZSGSRD 35337
17-03-17 17:52:41.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:41.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:41.578 -07 000000626 INF: FPGA: Recv ZSGSRD 35335
17-03-17 17:52:41.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:41.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:41.588 -07 000000424 INF: FPGA: Recv ZSGSRD 35332
17-03-17 17:52:41.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:41.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:41.598 -07 000000541 INF: FPGA: Recv ZSGSRD 35338
17-03-17 17:52:41.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:41.608 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:52:41.608 -07 000000626 INF: FPGA: Recv ZPIEZORD 31102
17-03-17 17:52:41.618 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:41.618 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.577 V. Piezo Error = -9.3 V.
17-03-17 17:52:41.618 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.3 um, Read 10 ADC samples: Avg = 35336 (-166.5 uncal um), Error = 0.9 uncal um, Median = 35337 (-166.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35332 (-166.4 uncal um), Max = 35339 (-166.5 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:52:41.618 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35336, posNoise = 3, negNoise = 4
17-03-17 17:52:41.618 -07 000000610 INF: Z Motor: After move to -0.167320, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:52:41.618 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 17:52:41.618 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:52:41.618 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:52:41.618 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:52:41.618 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:52:41.618 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:52:41.618 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:52:41.618 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:52:41.618 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:52:41.618 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:52:41.618 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:52:41.618 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:52:41.618 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:52:41.618 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:52:41.628 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:52:41.628 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:52:41.628 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:52:41.628 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 17:52:41.628 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 17:52:41.638 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:52:41.638 -07 000000431 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:52:41.638 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36728 150\n [Camera]
17-03-17 17:52:41.838 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:52:42.228 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:52:42.228 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:52:42.228 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:52:42.228 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:52:42.228 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:52:42.228 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:52:42.238 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:52:42.238 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 17:52:42.238 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:52:42.238 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) start.
17-03-17 17:52:42.418 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36728 775
17-03-17 17:52:42.568 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:52:42.608 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 17:52:42.608 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 17:52:42.608 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:52:42.608 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 17:52:42.608 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 17:52:42.608 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:52:42.608 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:52:42.618 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 17:52:42.618 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:52:42.618 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 17:52:42.758 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:52:42.758 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:52:42.758 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:52:42.758 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:52:42.758 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2239612688, 0x0, 391868352) start.
17-03-17 17:52:42.758 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:52:42.758 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:52:42.758 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:52:42.878 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:52:42.878 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 17:52:42.948 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:52:42.948 -07 000000424 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:52:42.948 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36728 150' command took 2 ms to send, 1305 ms to get response, and 1312 ms overall
17-03-17 17:52:42.948 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:52:42.948 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68896484375, Z-Position -0.1673293122524. ------
17-03-17 17:52:42.958 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:52:43.138 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2239612688, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 17:52:43.138 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 17:52:43.138 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:52:43.138 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 17:52:43.138 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 17:52:43.148 -07 000000551 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17400 mm
17-03-17 17:52:43.148 -07 000000551 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:52:43.248 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 17:52:43.248 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-17 17:52:43.248 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:52:43.248 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:52:43.258 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 494 ms.
17-03-17 17:52:43.278 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:52:43.278 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 310 ms to get response, and 320 ms overall
17-03-17 17:52:43.278 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:52:43.278 -07 000000433 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 17:52:43.278 -07 000000433 INF: Y Motor: Moving to 71.5326 mm, started at 70.6890 mm, delta = 0.8436 mm
17-03-17 17:52:43.288 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:52:43.938 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 38011, sync = True, waitForSettling = False)
17-03-17 17:52:43.938 -07 000000486 INF: Z Motor: Moving to -0.174003 mm, started at -0.167329 mm, distance = -6.67 um
17-03-17 17:52:43.938 -07 000000486 INF: FPGA: Xmit ZDACW 38011\n [Z Motor]
17-03-17 17:52:44.478 -07 000000576 INF: FPGA: Recv YRDPOS 144771
17-03-17 17:52:44.478 -07 000000576 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:52:44.478 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 17:52:44.478 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 1190 ms to get response, and 1200 ms overall
17-03-17 17:52:44.478 -07 000000486 INF: FPGA: 'ZDACW 38011' command took 0 ms to send, 530 ms to get response, and 532 ms overall
17-03-17 17:52:44.478 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:52:44.478 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1180 ms to get response, and 1196 ms overall
17-03-17 17:52:44.478 -07 000000433 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:52:44.478 -07 000000433 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:52:44.478 -07 000000433 INF: Y Motor: Moving 1350 steps-28
17-03-17 17:52:44.478 -07 000000424 INF: FPGA: Recv ZDACR 38011
17-03-17 17:52:44.488 -07 000000486 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:52:44.488 -07 000000433 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:52:44.488 -07 000000486 INF: Z Motor: MoveAbsStepped took 541 ms (did NOT wait for settling yet))
17-03-17 17:52:44.858 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-17 17:52:44.858 -07 000000433 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-17 17:52:44.898 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:52:44.898 -07 000000424 INF: FPGA: Recv YRDPOS 146472
17-03-17 17:52:44.908 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:52:44.908 -07 000000433 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:52:44.908 -07 000000433 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 17:52:44.908 -07 000000433 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.844 mm, average velocity = 2.186 mm/sec
17-03-17 17:52:45.138 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 6, FrontChillerTemperature: 3.951279,
17-03-17 17:52:45.858 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:52:45.858 -07 000000424 INF: FPGA: Recv YRDPOS 146472
17-03-17 17:52:45.868 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:52:45.868 -07 000000433 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:52:45.888 -07 000000433 INF: Y Motor: After move to 71.532608, error = -0.013077, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:52:45.888 -07 000000433 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:52:45.888 -07 000000433 INF: Y Motor: Moved to 71.5195 after 2606 ms (table move)
17-03-17 17:52:45.888 -07 000000551 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174003 mm (DAC = 38011)
17-03-17 17:52:45.888 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:45.888 -07 000000429 INF: FPGA: Recv ZSGSRD 36372
17-03-17 17:52:45.898 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:52:45.898 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:45.898 -07 000000576 INF: FPGA: Recv ZSGSRD 36369
17-03-17 17:52:45.908 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:45.908 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:45.908 -07 000000429 INF: FPGA: Recv ZSGSRD 36381
17-03-17 17:52:45.918 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:45.918 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:45.918 -07 000000576 INF: FPGA: Recv ZSGSRD 36380
17-03-17 17:52:45.928 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:45.928 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:45.928 -07 000000433 INF: FPGA: Recv ZSGSRD 36377
17-03-17 17:52:45.938 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:45.938 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:45.938 -07 000000547 INF: FPGA: Recv ZSGSRD 36383
17-03-17 17:52:45.948 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:45.948 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:45.948 -07 000000433 INF: FPGA: Recv ZSGSRD 36382
17-03-17 17:52:45.958 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:45.958 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:45.958 -07 000000482 INF: FPGA: Recv ZSGSRD 36366
17-03-17 17:52:45.968 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:45.968 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:45.968 -07 000000486 INF: FPGA: Recv ZSGSRD 36374
17-03-17 17:52:45.978 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:45.978 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:45.978 -07 000000482 INF: FPGA: Recv ZSGSRD 36371
17-03-17 17:52:45.988 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:45.988 -07 000000551 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:52:45.988 -07 000000576 INF: FPGA: Recv ZPIEZORD 32505
17-03-17 17:52:45.998 -07 000000551 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:45.998 -07 000000551 INF: Z Motor: Piezo is near 49.4 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.800 V. Piezo Error = -8.6 V.
17-03-17 17:52:45.998 -07 000000551 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.0 um, Read 10 ADC samples: Avg = 36376 (-173.1 uncal um), Error = 0.9 uncal um, Median = 36376 (-173.1 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36366 (-173.1 uncal um), Max = 36383 (-173.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 17:52:45.998 -07 000000551 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36376, posNoise = 7, negNoise = 10
17-03-17 17:52:45.998 -07 000000551 INF: Z Motor: After move to -0.174003, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:52:45.998 -07 000000551 INF: Z Motor: Settle wait time = 1946 ms, measure time = 106 ms (allowed 150 ms), total time = 2052 ms
17-03-17 17:52:45.998 -07 000000551 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 17:52:46.048 -07 000000551 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2891 ms
17-03-17 17:52:46.048 -07 000000551 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:52:46.048 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:52:46.048 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:52:46.048 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:52:46.048 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:52:46.048 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:52:46.048 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:52:46.048 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:52:46.048 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:52:46.058 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:52:46.058 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:52:46.058 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 17:52:46.058 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 17:52:46.068 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:52:46.108 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 41
17-03-17 17:52:46.308 -07 000000486 INF: FPGA: Recv @CAMSNAP img rdy 241
17-03-17 17:52:46.308 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 241
17-03-17 17:52:46.308 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:52:46.308 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) start.
17-03-17 17:52:46.348 -07 000000429 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:52:46.348 -07 000000547 INF: FPGA: Recv CAMSNAP
17-03-17 17:52:46.348 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 285 ms overall
17-03-17 17:52:46.428 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 17:52:46.428 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:52:46.428 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:52:46.428 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 17:52:46.448 -07 000000541 INF: Autofocus start
17-03-17 17:52:46.448 -07 000000541 INF: MeasureProfile start
17-03-17 17:52:46.448 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:52:46.448 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:52:46.458 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:52:46.458 -07 000000424 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:52:46.458 -07 000000541 INF: MeasureProfile done
17-03-17 17:52:46.458 -07 000000541 INF: X=16  Z correction [um]=0.01042744
17-03-17 17:52:46.458 -07 000000541 INF: Autofocus finished
17-03-17 17:52:46.538 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:52:46.538 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 5. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=54, R2=62, Total=116. Warn if over 250 bubbles per interval.
17-03-17 17:52:46.658 -07 000000547 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:52:46.658 -07 000000424 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:52:46.668 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51953125, Z-position -0.174010492879832. ----------
17-03-17 17:52:46.668 -07 000000610 INF: Cycle	6	Tile	15	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:52:46.668 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36526, sync = True, waitForSettling = True)
17-03-17 17:52:46.668 -07 000000610 INF: Z Motor: Moving to -0.167205 mm, started at -0.174010 mm, distance = 6.81 um
17-03-17 17:52:46.668 -07 000000610 INF: FPGA: Xmit ZDACW 36526\n [Z Motor]
17-03-17 17:52:46.668 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 17:52:46.678 -07 000000610 INF: FPGA: 'ZDACW 36526' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:52:46.678 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:52:46.678 -07 000000424 INF: FPGA: Recv ZDACR 36526
17-03-17 17:52:46.688 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:46.688 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:52:46.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:46.838 -07 000000541 INF: FPGA: Recv ZSGSRD 35320
17-03-17 17:52:46.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:52:46.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:46.848 -07 000000424 INF: FPGA: Recv ZSGSRD 35316
17-03-17 17:52:46.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:46.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:46.858 -07 000000541 INF: FPGA: Recv ZSGSRD 35314
17-03-17 17:52:46.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:46.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:46.868 -07 000000424 INF: FPGA: Recv ZSGSRD 35324
17-03-17 17:52:46.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:46.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:46.878 -07 000000576 INF: FPGA: Recv ZSGSRD 35322
17-03-17 17:52:46.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:46.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:46.888 -07 000000424 INF: FPGA: Recv ZSGSRD 35318
17-03-17 17:52:46.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:46.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:46.898 -07 000000547 INF: FPGA: Recv ZSGSRD 35315
17-03-17 17:52:46.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:46.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:46.908 -07 000000541 INF: FPGA: Recv ZSGSRD 35319
17-03-17 17:52:46.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:46.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:46.918 -07 000000547 INF: FPGA: Recv ZSGSRD 35316
17-03-17 17:52:46.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:46.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:46.928 -07 000000424 INF: FPGA: Recv ZSGSRD 35316
17-03-17 17:52:46.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:46.938 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:52:46.938 -07 000000486 INF: FPGA: Recv ZPIEZORD 31060
17-03-17 17:52:46.948 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:46.948 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.574 V. Piezo Error = -9.4 V.
17-03-17 17:52:46.948 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.2 um, Read 10 ADC samples: Avg = 35318 (-166.3 uncal um), Error = 0.9 uncal um, Median = 35317 (-166.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35314 (-166.3 uncal um), Max = 35324 (-166.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:52:46.948 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35318, posNoise = 6, negNoise = 4
17-03-17 17:52:46.948 -07 000000610 INF: Z Motor: After move to -0.167205, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:52:46.948 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 17:52:46.948 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:52:46.948 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:52:46.948 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:52:46.948 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:52:46.948 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:52:46.948 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:52:46.948 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:52:46.948 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:52:46.948 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 17:52:46.948 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:52:46.948 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:52:46.948 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:52:46.958 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:52:46.958 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:52:46.958 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:52:46.958 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:52:46.968 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 17:52:46.968 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 17:52:46.968 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:52:46.968 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 17:52:46.968 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36702 150\n [Camera]
17-03-17 17:52:47.168 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:52:47.558 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:52:47.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:52:47.558 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:52:47.558 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:52:47.558 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:52:47.558 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:52:47.568 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:52:47.568 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 17:52:47.568 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:52:47.568 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 17:52:47.748 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36702 775
17-03-17 17:52:47.898 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:52:47.958 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 17:52:47.958 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 17:52:47.958 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:52:47.958 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 17:52:47.968 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 17:52:47.968 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:52:47.968 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:52:47.968 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 17:52:47.968 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:52:47.978 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 17:52:48.088 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:52:48.088 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:52:48.088 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:52:48.088 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:52:48.088 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:52:48.088 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:52:48.098 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:52:48.098 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 17:52:48.098 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:52:48.098 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) start.
17-03-17 17:52:48.278 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:52:48.278 -07 000000482 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:52:48.278 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36702 150' command took 2 ms to send, 1307 ms to get response, and 1313 ms overall
17-03-17 17:52:48.278 -07 000000610 INF: Skipping AutoFocus in Tile 16: adopting Best-Z from the cache: -0.167376
17-03-17 17:52:48.278 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.16738 mm
17-03-17 17:52:48.278 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:52:48.398 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 17:52:48.398 -07 000000424 INF: Y Motor: Moving to 72.3626 mm, started at 71.5195 mm, delta = 0.8431 mm
17-03-17 17:52:48.398 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:52:48.398 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 36563, sync = True, waitForSettling = False)
17-03-17 17:52:48.398 -07 000000576 INF: Z Motor: Moving to -0.167375 mm, started at -0.167214 mm, distance = -0.16 um
17-03-17 17:52:48.398 -07 000000541 INF: FPGA: Recv YRDPOS 146473
17-03-17 17:52:48.408 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:52:48.408 -07 000000424 INF: Y Motor: Encoder = 146473 = motor step 114432.0 = 71.5200 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:52:48.408 -07 000000576 INF: FPGA: Xmit ZDACW 36563\n [Z Motor]
17-03-17 17:52:48.408 -07 000000424 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:52:48.408 -07 000000424 INF: Y Motor: Moving 1348 steps-27
17-03-17 17:52:48.408 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 17:52:48.418 -07 000000576 INF: FPGA: 'ZDACW 36563' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 17:52:48.418 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:52:48.418 -07 000000431 INF: FPGA: Recv ZDACR 36563
17-03-17 17:52:48.428 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:52:48.428 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:52:48.428 -07 000000576 INF: Z Motor: MoveAbsStepped took 25 ms (did NOT wait for settling yet))
17-03-17 17:52:48.488 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) end. Duration was 390 ms.
17-03-17 17:52:48.488 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 17:52:48.488 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:52:48.488 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 17:52:48.488 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 17:52:48.488 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:52:48.498 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:52:48.498 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:52:48.498 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 17:52:48.498 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 17:52:48.798 -07 000000547 INF: FPGA: Recv YMVTILE
17-03-17 17:52:48.798 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 17:52:48.828 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:52:48.838 -07 000000576 INF: FPGA: Recv YRDPOS 148173
17-03-17 17:52:48.838 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 17:52:48.838 -07 000000424 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:52:48.838 -07 000000424 INF: Y Motor: Position error before settling (table move) = -26 encoder counts (-0.013 mm)
17-03-17 17:52:48.838 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.843 mm, average velocity = 2.140 mm/sec
17-03-17 17:52:49.788 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:52:49.788 -07 000000576 INF: FPGA: Recv YRDPOS 148173
17-03-17 17:52:49.798 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:52:49.798 -07 000000424 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:52:49.808 -07 000000424 INF: Y Motor: After move to 72.362610, error = -0.012512, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:52:49.808 -07 000000424 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:52:49.808 -07 000000424 INF: Y Motor: Moved to 72.3501 after 1415 ms (table move)
17-03-17 17:52:49.818 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.167375 mm (DAC = 36563)
17-03-17 17:52:49.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:49.818 -07 000000424 INF: FPGA: Recv ZSGSRD 35348
17-03-17 17:52:49.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:52:49.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:49.828 -07 000000431 INF: FPGA: Recv ZSGSRD 35341
17-03-17 17:52:49.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:49.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:49.838 -07 000000431 INF: FPGA: Recv ZSGSRD 35349
17-03-17 17:52:49.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:49.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:49.848 -07 000000431 INF: FPGA: Recv ZSGSRD 35349
17-03-17 17:52:49.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:49.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:49.858 -07 000000576 INF: FPGA: Recv ZSGSRD 35343
17-03-17 17:52:49.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:49.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:49.868 -07 000000486 INF: FPGA: Recv ZSGSRD 35346
17-03-17 17:52:49.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:49.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:49.878 -07 000000576 INF: FPGA: Recv ZSGSRD 35347
17-03-17 17:52:49.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:49.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:49.888 -07 000000486 INF: FPGA: Recv ZSGSRD 35350
17-03-17 17:52:49.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:49.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:49.898 -07 000000547 INF: FPGA: Recv ZSGSRD 35349
17-03-17 17:52:49.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:49.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:49.908 -07 000000486 INF: FPGA: Recv ZSGSRD 35337
17-03-17 17:52:49.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:52:49.918 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:52:49.918 -07 000000547 INF: FPGA: Recv ZPIEZORD 31124
17-03-17 17:52:49.928 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:49.928 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.579 V. Piezo Error = -9.3 V.
17-03-17 17:52:49.928 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.4 um, Read 10 ADC samples: Avg = 35346 (-166.5 uncal um), Error = 0.8 uncal um, Median = 35348 (-166.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35337 (-166.5 uncal um), Max = 35350 (-166.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 17:52:49.928 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35346, posNoise = 4, negNoise = 9
17-03-17 17:52:49.928 -07 000000610 INF: Z Motor: After move to -0.167375, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:52:49.928 -07 000000610 INF: Z Motor: Settle wait time = 1417 ms, measure time = 108 ms (allowed 150 ms), total time = 1525 ms
17-03-17 17:52:49.928 -07 000000610 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 17:52:49.978 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1690 ms
17-03-17 17:52:49.978 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:52:49.978 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.35009765625, Z-position -0.167393554373818. ----------
17-03-17 17:52:49.978 -07 000000610 INF: Cycle	6	Tile	16	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:52:49.978 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36387, sync = True, waitForSettling = True)
17-03-17 17:52:49.978 -07 000000610 INF: Z Motor: Moving to -0.166569 mm, started at -0.167394 mm, distance = 0.82 um
17-03-17 17:52:49.978 -07 000000610 INF: FPGA: Xmit ZDACW 36387\n [Z Motor]
17-03-17 17:52:49.978 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 17:52:49.988 -07 000000610 INF: FPGA: 'ZDACW 36387' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:52:49.988 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:52:49.988 -07 000000486 INF: FPGA: Recv ZDACR 36387
17-03-17 17:52:49.998 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:49.998 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:52:50.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:50.148 -07 000000431 INF: FPGA: Recv ZSGSRD 35221
17-03-17 17:52:50.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:52:50.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:50.158 -07 000000547 INF: FPGA: Recv ZSGSRD 35226
17-03-17 17:52:50.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:50.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:50.168 -07 000000486 INF: FPGA: Recv ZSGSRD 35219
17-03-17 17:52:50.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:50.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:50.188 -07 000000547 INF: FPGA: Recv ZSGSRD 35227
17-03-17 17:52:50.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:52:50.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:50.198 -07 000000486 INF: FPGA: Recv ZSGSRD 35222
17-03-17 17:52:50.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:50.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:50.208 -07 000000547 INF: FPGA: Recv ZSGSRD 35221
17-03-17 17:52:50.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:50.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:50.218 -07 000000424 INF: FPGA: Recv ZSGSRD 35228
17-03-17 17:52:50.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:50.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:50.228 -07 000000424 INF: FPGA: Recv ZSGSRD 35225
17-03-17 17:52:50.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:50.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:50.238 -07 000000431 INF: FPGA: Recv ZSGSRD 35215
17-03-17 17:52:50.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:50.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:50.248 -07 000000576 INF: FPGA: Recv ZSGSRD 35218
17-03-17 17:52:50.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:50.258 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:52:50.258 -07 000000576 INF: FPGA: Recv ZPIEZORD 30974
17-03-17 17:52:50.268 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:50.268 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.552 V. Piezo Error = -9.4 V.
17-03-17 17:52:50.268 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.6 um, Read 10 ADC samples: Avg = 35222 (-165.7 uncal um), Error = 0.8 uncal um, Median = 35222 (-165.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35215 (-165.7 uncal um), Max = 35228 (-165.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 17:52:50.268 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35222, posNoise = 6, negNoise = 7
17-03-17 17:52:50.268 -07 000000610 INF: Z Motor: After move to -0.166569, error = -0.000028, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:52:50.268 -07 000000610 INF: Z Motor: MoveAbsStepped took 286 ms)
17-03-17 17:52:50.268 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:52:50.268 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:52:50.268 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:52:50.268 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:52:50.268 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:52:50.268 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:52:50.268 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:52:50.268 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:52:50.268 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:52:50.268 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:52:50.268 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:52:50.268 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:52:50.278 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:52:50.278 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:52:50.278 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:52:50.278 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:52:50.278 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:52:50.278 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 17:52:50.288 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 17:52:50.288 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:52:50.288 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36563 150\n [Camera]
17-03-17 17:52:50.488 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:52:50.498 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 6, FrontChillerTemperature: 3.96762,
17-03-17 17:52:50.878 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:52:50.878 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:52:50.878 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:52:50.878 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:52:50.878 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:52:50.878 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:52:50.888 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:52:50.888 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 17:52:50.888 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:52:50.888 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 17:52:51.068 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36563 775
17-03-17 17:52:51.218 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:52:51.258 -07 000000424 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 368 ms.
17-03-17 17:52:51.258 -07 000000424 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 368 ms.
17-03-17 17:52:51.258 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:52:51.258 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 17:52:51.258 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 17:52:51.258 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:52:51.258 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:52:51.258 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:52:51.258 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 17:52:51.268 -07 000000424 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 17:52:51.408 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:52:51.408 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:52:51.408 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:52:51.418 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:52:51.418 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:52:51.418 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:52:51.418 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:52:51.418 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 17:52:51.418 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:52:51.418 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2350877912, 0x0, 391868352) start.
17-03-17 17:52:51.538 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:52:51.538 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 5. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=54, R2=62, Total=116. Warn if over 250 bubbles per interval.
17-03-17 17:52:51.598 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:52:51.598 -07 000000431 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:52:51.598 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36563 150' command took 2 ms to send, 1307 ms to get response, and 1313 ms overall
17-03-17 17:52:51.598 -07 000000610 INF: Skipping AutoFocus in Tile 17: adopting Best-Z from the cache: -0.167082
17-03-17 17:52:51.608 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.16708 mm
17-03-17 17:52:51.608 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:52:51.608 -07 000000424 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 17:52:51.608 -07 000000431 INF: Z Motor: Entering MoveAbsStepped (DAC = 36499, sync = True, waitForSettling = False)
17-03-17 17:52:51.608 -07 000000431 INF: Z Motor: Moving to -0.167082 mm, started at -0.166597 mm, distance = -0.48 um
17-03-17 17:52:51.608 -07 000000431 INF: FPGA: Xmit ZDACW 36499\n [Z Motor]
17-03-17 17:52:51.608 -07 000000424 INF: Y Motor: Moving to 73.1926 mm, started at 72.3501 mm, delta = 0.8425 mm
17-03-17 17:52:51.608 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 17:52:51.618 -07 000000431 INF: FPGA: 'ZDACW 36499' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:52:51.618 -07 000000431 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:52:51.618 -07 000000409 INF: FPGA: Recv ZDACR 36499
17-03-17 17:52:51.628 -07 000000431 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:51.628 -07 000000431 INF: Z Motor: MoveAbsStepped took 16 ms (did NOT wait for settling yet))
17-03-17 17:52:51.628 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:52:51.628 -07 000000409 INF: FPGA: Recv YRDPOS 148173
17-03-17 17:52:51.638 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 17:52:51.638 -07 000000424 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:52:51.638 -07 000000424 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:52:51.638 -07 000000424 INF: Y Motor: Moving 1348 steps-26
17-03-17 17:52:51.638 -07 000000424 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:52:51.798 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 17:52:51.798 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 17:52:51.798 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:52:51.798 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:52:51.798 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2350877912, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 17:52:51.798 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 17:52:51.798 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:52:51.808 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:52:51.808 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 17:52:51.808 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 17:52:52.008 -07 000000547 INF: FPGA: Recv YMVTILE
17-03-17 17:52:52.008 -07 000000424 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 378 ms overall
17-03-17 17:52:52.048 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:52:52.048 -07 000000626 INF: FPGA: Recv YRDPOS 149865
17-03-17 17:52:52.058 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:52:52.058 -07 000000424 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:52:52.058 -07 000000424 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-17 17:52:52.058 -07 000000424 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.843 mm, average velocity = 2.229 mm/sec
17-03-17 17:52:53.008 -07 000000424 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:52:53.008 -07 000000626 INF: FPGA: Recv YRDPOS 149865
17-03-17 17:52:53.018 -07 000000424 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:52:53.018 -07 000000424 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:52:53.028 -07 000000424 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:52:53.028 -07 000000424 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:52:53.028 -07 000000424 INF: Y Motor: Moved to 73.1763 after 1425 ms (table move)
17-03-17 17:52:53.038 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.167082 mm (DAC = 36499)
17-03-17 17:52:53.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:53.038 -07 000000409 INF: FPGA: Recv ZSGSRD 35297
17-03-17 17:52:53.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:52:53.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:53.048 -07 000000424 INF: FPGA: Recv ZSGSRD 35297
17-03-17 17:52:53.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:53.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:53.058 -07 000000486 INF: FPGA: Recv ZSGSRD 35299
17-03-17 17:52:53.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:53.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:53.068 -07 000000431 INF: FPGA: Recv ZSGSRD 35300
17-03-17 17:52:53.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:53.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:53.078 -07 000000486 INF: FPGA: Recv ZSGSRD 35303
17-03-17 17:52:53.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:53.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:53.088 -07 000000626 INF: FPGA: Recv ZSGSRD 35305
17-03-17 17:52:53.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:52:53.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:53.098 -07 000000576 INF: FPGA: Recv ZSGSRD 35305
17-03-17 17:52:53.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:53.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:53.108 -07 000000626 INF: FPGA: Recv ZSGSRD 35291
17-03-17 17:52:53.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:53.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:53.118 -07 000000486 INF: FPGA: Recv ZSGSRD 35297
17-03-17 17:52:53.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:53.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:53.128 -07 000000486 INF: FPGA: Recv ZSGSRD 35300
17-03-17 17:52:53.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:53.138 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:52:53.138 -07 000000576 INF: FPGA: Recv ZPIEZORD 31061
17-03-17 17:52:53.148 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:53.148 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.569 V. Piezo Error = -9.3 V.
17-03-17 17:52:53.148 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.1 um, Read 10 ADC samples: Avg = 35299 (-166.2 uncal um), Error = 0.9 uncal um, Median = 35300 (-166.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35291 (-166.2 uncal um), Max = 35305 (-166.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 17:52:53.148 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35299, posNoise = 6, negNoise = 8
17-03-17 17:52:53.148 -07 000000610 INF: Z Motor: After move to -0.167082, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:52:53.148 -07 000000610 INF: Z Motor: Settle wait time = 1427 ms, measure time = 109 ms (allowed 150 ms), total time = 1536 ms
17-03-17 17:52:53.148 -07 000000610 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 17:52:53.198 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1590 ms
17-03-17 17:52:53.198 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:52:53.198 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.167091616403155. ----------
17-03-17 17:52:53.198 -07 000000610 INF: Cycle	6	Tile	17	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:52:53.198 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36322, sync = True, waitForSettling = True)
17-03-17 17:52:53.198 -07 000000610 INF: Z Motor: Moving to -0.166271 mm, started at -0.167092 mm, distance = 0.82 um
17-03-17 17:52:53.198 -07 000000610 INF: FPGA: Xmit ZDACW 36322\n [Z Motor]
17-03-17 17:52:53.198 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 17:52:53.208 -07 000000610 INF: FPGA: 'ZDACW 36322' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:52:53.208 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:52:53.208 -07 000000626 INF: FPGA: Recv ZDACR 36322
17-03-17 17:52:53.218 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:53.218 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:52:53.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:53.368 -07 000000486 INF: FPGA: Recv ZSGSRD 35176
17-03-17 17:52:53.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:52:53.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:53.378 -07 000000626 INF: FPGA: Recv ZSGSRD 35175
17-03-17 17:52:53.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:53.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:53.388 -07 000000486 INF: FPGA: Recv ZSGSRD 35178
17-03-17 17:52:53.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:53.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:53.398 -07 000000626 INF: FPGA: Recv ZSGSRD 35169
17-03-17 17:52:53.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:53.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:53.408 -07 000000486 INF: FPGA: Recv ZSGSRD 35174
17-03-17 17:52:53.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:53.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:53.418 -07 000000486 INF: FPGA: Recv ZSGSRD 35178
17-03-17 17:52:53.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:53.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:53.428 -07 000000576 INF: FPGA: Recv ZSGSRD 35168
17-03-17 17:52:53.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:53.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:53.438 -07 000000576 INF: FPGA: Recv ZSGSRD 35174
17-03-17 17:52:53.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:53.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:53.448 -07 000000547 INF: FPGA: Recv ZSGSRD 35168
17-03-17 17:52:53.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:53.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:53.458 -07 000000486 INF: FPGA: Recv ZSGSRD 35178
17-03-17 17:52:53.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:53.468 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:52:53.468 -07 000000547 INF: FPGA: Recv ZPIEZORD 30895
17-03-17 17:52:53.478 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:53.478 -07 000000610 INF: Z Motor: Piezo is near 46.0 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.542 V. Piezo Error = -9.4 V.
17-03-17 17:52:53.478 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.3 um, Read 10 ADC samples: Avg = 35174 (-165.4 uncal um), Error = 0.8 uncal um, Median = 35174 (-165.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35168 (-165.4 uncal um), Max = 35178 (-165.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:52:53.478 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35174, posNoise = 4, negNoise = 6
17-03-17 17:52:53.478 -07 000000610 INF: Z Motor: After move to -0.166271, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:52:53.478 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:52:53.478 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:52:53.478 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:52:53.478 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:52:53.478 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:52:53.478 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:52:53.478 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:52:53.478 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:52:53.478 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:52:53.478 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:52:53.478 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:52:53.478 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:52:53.478 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:52:53.488 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:52:53.488 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:52:53.488 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:52:53.488 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:52:53.498 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 17:52:53.498 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 17:52:53.498 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 17:52:53.498 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 17:52:53.498 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36499 150\n [Camera]
17-03-17 17:52:53.698 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:52:54.088 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:52:54.088 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:52:54.088 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:52:54.098 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:52:54.098 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2239612688, 0x0, 391868352) start.
17-03-17 17:52:54.098 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:52:54.098 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:52:54.098 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:52:54.098 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:52:54.098 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1048252464, 0x0, 418435064) start.
17-03-17 17:52:54.288 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36499 775
17-03-17 17:52:54.438 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 926
17-03-17 17:52:54.478 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1048252464, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 17:52:54.478 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 17:52:54.478 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:52:54.478 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2239612688, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 17:52:54.478 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 17:52:54.478 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:52:54.478 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:52:54.478 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:52:54.478 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 17:52:54.488 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 17:52:54.618 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:52:54.618 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:52:54.628 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:52:54.628 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:52:54.628 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1083674728, 0x0, 391868352) start.
17-03-17 17:52:54.628 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:52:54.628 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:52:54.628 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:52:54.628 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:52:54.628 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1119096992, 0x0, 418435064) start.
17-03-17 17:52:54.818 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:52:54.818 -07 000000593 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:52:54.818 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36499 150' command took 2 ms to send, 1301 ms to get response, and 1312 ms overall
17-03-17 17:52:54.818 -07 000000610 INF: Skipping AutoFocus in Tile 18: adopting Best-Z from the cache: -0.166625
17-03-17 17:52:54.818 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.16662 mm
17-03-17 17:52:54.818 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:52:54.818 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 17:52:54.818 -07 000000576 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-17 17:52:54.818 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:52:54.818 -07 000000593 INF: Z Motor: Entering MoveAbsStepped (DAC = 36399, sync = True, waitForSettling = False)
17-03-17 17:52:54.818 -07 000000593 INF: Z Motor: Moving to -0.166624 mm, started at -0.166289 mm, distance = -0.34 um
17-03-17 17:52:54.828 -07 000000593 INF: FPGA: Xmit ZDACW 36399\n [Z Motor]
17-03-17 17:52:54.828 -07 000000541 INF: FPGA: Recv YRDPOS 149865
17-03-17 17:52:54.828 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 17:52:54.828 -07 000000576 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:52:54.828 -07 000000576 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:52:54.828 -07 000000576 INF: Y Motor: Moving 1354 steps-33
17-03-17 17:52:54.828 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 17:52:54.838 -07 000000593 INF: FPGA: 'ZDACW 36399' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 17:52:54.838 -07 000000593 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:52:54.838 -07 000000429 INF: FPGA: Recv ZDACR 36399
17-03-17 17:52:54.848 -07 000000593 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:54.848 -07 000000593 INF: Z Motor: MoveAbsStepped took 21 ms (did NOT wait for settling yet))
17-03-17 17:52:54.848 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:52:55.008 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1119096992, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 17:52:55.008 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 17:52:55.008 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:52:55.008 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1083674728, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 17:52:55.008 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 17:52:55.008 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:52:55.008 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:52:55.008 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:52:55.008 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 17:52:55.018 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 17:52:55.218 -07 000000547 INF: FPGA: Recv YMVTILE
17-03-17 17:52:55.218 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 17:52:55.248 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:52:55.248 -07 000000433 INF: FPGA: Recv YRDPOS 151570
17-03-17 17:52:55.258 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:52:55.258 -07 000000576 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:52:55.258 -07 000000576 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 17:52:55.258 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.846 mm, average velocity = 2.132 mm/sec
17-03-17 17:52:55.868 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 6, FrontChillerTemperature: 3.969015,
17-03-17 17:52:56.208 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:52:56.208 -07 000000433 INF: FPGA: Recv YRDPOS 151570
17-03-17 17:52:56.218 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:56.218 -07 000000576 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:52:56.228 -07 000000576 INF: Y Motor: After move to 74.022606, error = -0.013817, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:52:56.228 -07 000000576 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:52:56.228 -07 000000576 INF: Y Motor: Moved to 74.0088 after 1408 ms (table move)
17-03-17 17:52:56.228 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.166624 mm (DAC = 36399)
17-03-17 17:52:56.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:56.238 -07 000000482 INF: FPGA: Recv ZSGSRD 35232
17-03-17 17:52:56.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 17:52:56.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:56.248 -07 000000482 INF: FPGA: Recv ZSGSRD 35223
17-03-17 17:52:56.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:56.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:56.258 -07 000000482 INF: FPGA: Recv ZSGSRD 35222
17-03-17 17:52:56.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:56.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:56.268 -07 000000482 INF: FPGA: Recv ZSGSRD 35223
17-03-17 17:52:56.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:56.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:56.278 -07 000000482 INF: FPGA: Recv ZSGSRD 35231
17-03-17 17:52:56.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:56.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:56.288 -07 000000551 INF: FPGA: Recv ZSGSRD 35233
17-03-17 17:52:56.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:56.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:56.298 -07 000000551 INF: FPGA: Recv ZSGSRD 35234
17-03-17 17:52:56.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:56.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:56.308 -07 000000547 INF: FPGA: Recv ZSGSRD 35235
17-03-17 17:52:56.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:56.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:56.318 -07 000000593 INF: FPGA: Recv ZSGSRD 35226
17-03-17 17:52:56.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:56.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:56.328 -07 000000482 INF: FPGA: Recv ZSGSRD 35225
17-03-17 17:52:56.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:56.338 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:52:56.338 -07 000000482 INF: FPGA: Recv ZPIEZORD 30997
17-03-17 17:52:56.348 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:56.348 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.554 V. Piezo Error = -9.3 V.
17-03-17 17:52:56.348 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.6 um, Read 10 ADC samples: Avg = 35228 (-165.8 uncal um), Error = 0.9 uncal um, Median = 35228 (-165.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35222 (-165.7 uncal um), Max = 35235 (-165.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:52:56.348 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35228, posNoise = 7, negNoise = 6
17-03-17 17:52:56.348 -07 000000610 INF: Z Motor: After move to -0.166624, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:52:56.348 -07 000000610 INF: Z Motor: Settle wait time = 1409 ms, measure time = 113 ms (allowed 150 ms), total time = 1522 ms
17-03-17 17:52:56.348 -07 000000610 INF: Z Motor: Waiting extra 37 ms after reading position to reach expected total of 150 ms
17-03-17 17:52:56.388 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1566 ms
17-03-17 17:52:56.388 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:52:56.388 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0087890625, Z-position -0.16663549734109. ----------
17-03-17 17:52:56.388 -07 000000610 INF: Cycle	6	Tile	18	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:52:56.388 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36222, sync = True, waitForSettling = True)
17-03-17 17:52:56.388 -07 000000610 INF: Z Motor: Moving to -0.165814 mm, started at -0.166635 mm, distance = 0.82 um
17-03-17 17:52:56.388 -07 000000610 INF: FPGA: Xmit ZDACW 36222\n [Z Motor]
17-03-17 17:52:56.388 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 17:52:56.398 -07 000000610 INF: FPGA: 'ZDACW 36222' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:52:56.398 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:52:56.398 -07 000000593 INF: FPGA: Recv ZDACR 36222
17-03-17 17:52:56.408 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:56.408 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:52:56.538 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:52:56.538 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 5. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=54, R2=62, Total=116. Warn if over 250 bubbles per interval.
17-03-17 17:52:56.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:56.558 -07 000000433 INF: FPGA: Recv ZSGSRD 35101
17-03-17 17:52:56.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:52:56.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:56.568 -07 000000433 INF: FPGA: Recv ZSGSRD 35101
17-03-17 17:52:56.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:56.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:56.578 -07 000000541 INF: FPGA: Recv ZSGSRD 35100
17-03-17 17:52:56.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:56.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:56.588 -07 000000429 INF: FPGA: Recv ZSGSRD 35101
17-03-17 17:52:56.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:56.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:56.598 -07 000000429 INF: FPGA: Recv ZSGSRD 35101
17-03-17 17:52:56.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:56.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:56.608 -07 000000429 INF: FPGA: Recv ZSGSRD 35105
17-03-17 17:52:56.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:56.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:56.618 -07 000000593 INF: FPGA: Recv ZSGSRD 35108
17-03-17 17:52:56.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:56.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:56.628 -07 000000576 INF: FPGA: Recv ZSGSRD 35099
17-03-17 17:52:56.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:56.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:56.638 -07 000000409 INF: FPGA: Recv ZSGSRD 35096
17-03-17 17:52:56.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:56.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:52:56.648 -07 000000486 INF: FPGA: Recv ZSGSRD 35101
17-03-17 17:52:56.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:56.658 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:52:56.658 -07 000000409 INF: FPGA: Recv ZPIEZORD 30836
17-03-17 17:52:56.668 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:52:56.668 -07 000000610 INF: Z Motor: Piezo is near 45.9 V (nominally 0 to 100 V), expect near 55.3 V, since DAC is at 5.527 V. Piezo Error = -9.4 V.
17-03-17 17:52:56.668 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.8 um, Read 10 ADC samples: Avg = 35101 (-165.0 uncal um), Error = 0.9 uncal um, Median = 35101 (-165.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35096 (-164.9 uncal um), Max = 35108 (-165.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:52:56.668 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35101, posNoise = 7, negNoise = 5
17-03-17 17:52:56.668 -07 000000610 INF: Z Motor: After move to -0.165814, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:52:56.668 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 17:52:56.668 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:52:56.668 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:52:56.668 -07 000000409 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:52:56.668 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:52:56.668 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:52:56.668 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:52:56.668 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:52:56.668 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:52:56.668 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:52:56.668 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:52:56.668 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:52:56.668 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:52:56.668 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:52:56.668 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:52:56.678 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:52:56.678 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:52:56.678 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:52:56.678 -07 000000409 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 17:52:56.688 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 17:52:56.688 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 17:52:56.688 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36399 150\n [Camera]
17-03-17 17:52:56.888 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:52:57.278 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:52:57.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:52:57.278 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:52:57.278 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:52:57.278 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 17:52:57.278 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:52:57.278 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:52:57.278 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:52:57.278 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:52:57.278 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 17:52:57.468 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36399 775
17-03-17 17:52:57.618 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:52:57.648 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 368 ms.
17-03-17 17:52:57.648 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 369 ms.
17-03-17 17:52:57.648 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:52:57.658 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:52:57.658 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 17:52:57.658 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 17:52:57.658 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:52:57.658 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:52:57.658 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 17:52:57.658 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 17:52:57.808 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:52:57.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:52:57.808 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:52:57.928 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:52:57.928 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:52:57.928 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:52:57.928 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:52:57.928 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 17:52:57.928 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:52:57.928 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 17:52:57.998 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:52:57.998 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:52:57.998 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36399 150' command took 2 ms to send, 1307 ms to get response, and 1312 ms overall
17-03-17 17:52:57.998 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 17:52:57.998 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0087890625, Z-Position -0.165819622399086. ------
17-03-17 17:52:58.008 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:52:58.308 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 17:52:58.308 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 17:52:58.308 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:52:58.308 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 17:52:58.308 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 17:52:58.308 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:52:58.308 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:52:58.308 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:52:58.308 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 501 ms.
17-03-17 17:52:58.318 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 17:52:58.318 -07 000000486 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17215 mm
17-03-17 17:52:58.318 -07 000000486 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:52:58.328 -07 000000409 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:52:58.328 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 312 ms to get response, and 319 ms overall
17-03-17 17:52:58.328 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:52:58.328 -07 000000409 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 17:52:58.328 -07 000000409 INF: Y Motor: Moving to 74.8526 mm, started at 74.0088 mm, delta = 0.8438 mm
17-03-17 17:52:58.338 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:52:59.168 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 37607, sync = True, waitForSettling = False)
17-03-17 17:52:59.168 -07 000000424 INF: Z Motor: Moving to -0.172154 mm, started at -0.165820 mm, distance = -6.33 um
17-03-17 17:52:59.168 -07 000000424 INF: FPGA: Xmit ZDACW 37607\n [Z Motor]
17-03-17 17:52:59.698 -07 000000431 INF: FPGA: Recv YRDPOS 151570
17-03-17 17:52:59.698 -07 000000431 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:52:59.698 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 17:52:59.698 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 1360 ms to get response, and 1367 ms overall
17-03-17 17:52:59.698 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1350 ms to get response, and 1364 ms overall
17-03-17 17:52:59.698 -07 000000409 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:52:59.698 -07 000000409 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:52:59.698 -07 000000409 INF: Y Motor: Moving 1350 steps-28
17-03-17 17:52:59.698 -07 000000409 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:52:59.698 -07 000000424 INF: FPGA: 'ZDACW 37607' command took 0 ms to send, 520 ms to get response, and 529 ms overall
17-03-17 17:52:59.708 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:52:59.708 -07 000000576 INF: FPGA: Recv ZDACR 37607
17-03-17 17:52:59.718 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 17:52:59.718 -07 000000424 INF: Z Motor: MoveAbsStepped took 548 ms (did NOT wait for settling yet))
17-03-17 17:53:00.068 -07 000000431 INF: FPGA: Recv YMVTILE
17-03-17 17:53:00.078 -07 000000409 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 378 ms overall
17-03-17 17:53:00.098 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:53:00.098 -07 000000576 INF: FPGA: Recv YRDPOS 153257
17-03-17 17:53:00.108 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:00.108 -07 000000409 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:53:00.108 -07 000000409 INF: Y Motor: Position error before settling (table move) = -41 encoder counts (-0.020 mm)
17-03-17 17:53:00.108 -07 000000409 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.844 mm, average velocity = 2.232 mm/sec
17-03-17 17:53:01.058 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:53:01.058 -07 000000459 INF: FPGA: Recv YRDPOS 153257
17-03-17 17:53:01.068 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:53:01.068 -07 000000409 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:53:01.078 -07 000000409 INF: Y Motor: After move to 74.852608, error = -0.020088, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:53:01.078 -07 000000409 INF: Y Motor: Position error after settling (table move) = -41 encoder counts (-0.020 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:53:01.078 -07 000000409 INF: Y Motor: Moved to 74.8325 after 2748 ms (table move)
17-03-17 17:53:01.078 -07 000000486 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172154 mm (DAC = 37607)
17-03-17 17:53:01.078 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:01.088 -07 000000431 INF: FPGA: Recv ZSGSRD 36094
17-03-17 17:53:01.088 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 17:53:01.088 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:01.088 -07 000000424 INF: FPGA: Recv ZSGSRD 36090
17-03-17 17:53:01.098 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:53:01.098 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:01.098 -07 000000551 INF: FPGA: Recv ZSGSRD 36090
17-03-17 17:53:01.108 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:01.108 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:01.108 -07 000000424 INF: FPGA: Recv ZSGSRD 36088
17-03-17 17:53:01.118 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:01.118 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:01.118 -07 000000551 INF: FPGA: Recv ZSGSRD 36089
17-03-17 17:53:01.128 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:01.128 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:01.128 -07 000000431 INF: FPGA: Recv ZSGSRD 36095
17-03-17 17:53:01.138 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:01.138 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:01.138 -07 000000551 INF: FPGA: Recv ZSGSRD 36088
17-03-17 17:53:01.148 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:01.148 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:01.148 -07 000000424 INF: FPGA: Recv ZSGSRD 36088
17-03-17 17:53:01.158 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:01.158 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:01.158 -07 000000551 INF: FPGA: Recv ZSGSRD 36077
17-03-17 17:53:01.168 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:01.168 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:01.168 -07 000000576 INF: FPGA: Recv ZSGSRD 36085
17-03-17 17:53:01.178 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:01.178 -07 000000486 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:53:01.178 -07 000000431 INF: FPGA: Recv ZPIEZORD 32132
17-03-17 17:53:01.188 -07 000000486 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:01.188 -07 000000486 INF: Z Motor: Piezo is near 48.6 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.738 V. Piezo Error = -8.7 V.
17-03-17 17:53:01.188 -07 000000486 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.2 um, Read 10 ADC samples: Avg = 36088 (-171.3 uncal um), Error = 0.9 uncal um, Median = 36088 (-171.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36077 (-171.2 uncal um), Max = 36095 (-171.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 17:53:01.188 -07 000000486 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36088, posNoise = 7, negNoise = 11
17-03-17 17:53:01.188 -07 000000486 INF: Z Motor: After move to -0.172154, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:53:01.188 -07 000000486 INF: Z Motor: Settle wait time = 1916 ms, measure time = 104 ms (allowed 150 ms), total time = 2020 ms
17-03-17 17:53:01.188 -07 000000486 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 17:53:01.238 -07 000000486 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2910 ms
17-03-17 17:53:01.238 -07 000000486 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:53:01.238 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:53:01.238 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:53:01.238 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:53:01.238 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:53:01.238 -07 000000409 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:53:01.238 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:53:01.238 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:53:01.238 -07 000000409 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:53:01.248 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 6, FrontChillerTemperature: 3.941732,
17-03-17 17:53:01.248 -07 000000409 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:53:01.248 -07 000000409 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:53:01.258 -07 000000409 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-17 17:53:01.258 -07 000000409 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 17:53:01.278 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:53:01.318 -07 000000459 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:53:01.518 -07 000000431 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:53:01.518 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:53:01.518 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:53:01.518 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2182910056, 0x0, 559484976) start.
17-03-17 17:53:01.538 -07 000000431 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:53:01.558 -07 000000424 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:53:01.558 -07 000000459 INF: FPGA: Recv CAMSNAP
17-03-17 17:53:01.558 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 302 ms overall
17-03-17 17:53:01.638 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2182910056, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 17:53:01.638 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:53:01.638 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:53:01.638 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 17:53:01.638 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 5. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=54, R2=62, Total=116. Warn if over 250 bubbles per interval.
17-03-17 17:53:01.658 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:53:01.658 -07 000000424 INF: Autofocus start
17-03-17 17:53:01.658 -07 000000424 INF: MeasureProfile start
17-03-17 17:53:01.658 -07 000000409 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:53:01.668 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:53:01.668 -07 000000459 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:53:01.668 -07 000000424 INF: MeasureProfile done
17-03-17 17:53:01.668 -07 000000424 INF: X=0  Z correction [um]=-0.0713522
17-03-17 17:53:01.668 -07 000000424 INF: Autofocus finished
17-03-17 17:53:01.868 -07 000000482 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:53:01.868 -07 000000459 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:53:01.868 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83251953125, Z-position -0.172160319783004. ----------
17-03-17 17:53:01.868 -07 000000610 INF: Cycle	6	Tile	19	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:53:01.878 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36104, sync = True, waitForSettling = True)
17-03-17 17:53:01.878 -07 000000610 INF: Z Motor: Moving to -0.165274 mm, started at -0.172160 mm, distance = 6.89 um
17-03-17 17:53:01.878 -07 000000610 INF: FPGA: Xmit ZDACW 36104\n [Z Motor]
17-03-17 17:53:01.878 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 17:53:01.888 -07 000000610 INF: FPGA: 'ZDACW 36104' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:53:01.888 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:53:01.888 -07 000000626 INF: FPGA: Recv ZDACR 36104
17-03-17 17:53:01.898 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:01.898 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:53:02.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:02.048 -07 000000541 INF: FPGA: Recv ZSGSRD 35018
17-03-17 17:53:02.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:53:02.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:02.058 -07 000000459 INF: FPGA: Recv ZSGSRD 35014
17-03-17 17:53:02.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:02.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:02.068 -07 000000409 INF: FPGA: Recv ZSGSRD 35023
17-03-17 17:53:02.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:02.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:02.078 -07 000000431 INF: FPGA: Recv ZSGSRD 35016
17-03-17 17:53:02.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:02.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:02.088 -07 000000424 INF: FPGA: Recv ZSGSRD 35020
17-03-17 17:53:02.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:02.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:02.098 -07 000000429 INF: FPGA: Recv ZSGSRD 35020
17-03-17 17:53:02.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:02.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:02.108 -07 000000482 INF: FPGA: Recv ZSGSRD 35014
17-03-17 17:53:02.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:02.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:02.118 -07 000000576 INF: FPGA: Recv ZSGSRD 35019
17-03-17 17:53:02.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:02.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:02.128 -07 000000433 INF: FPGA: Recv ZSGSRD 35013
17-03-17 17:53:02.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:02.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:02.138 -07 000000547 INF: FPGA: Recv ZSGSRD 35018
17-03-17 17:53:02.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:02.148 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:53:02.148 -07 000000409 INF: FPGA: Recv ZPIEZORD 30726
17-03-17 17:53:02.158 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:02.158 -07 000000610 INF: Z Motor: Piezo is near 45.6 V (nominally 0 to 100 V), expect near 55.1 V, since DAC is at 5.509 V. Piezo Error = -9.5 V.
17-03-17 17:53:02.158 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.3 um, Read 10 ADC samples: Avg = 35018 (-164.4 uncal um), Error = 0.9 uncal um, Median = 35018 (-164.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35013 (-164.4 uncal um), Max = 35023 (-164.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:53:02.158 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35018, posNoise = 5, negNoise = 5
17-03-17 17:53:02.158 -07 000000610 INF: Z Motor: After move to -0.165274, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:53:02.158 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 17:53:02.158 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:53:02.158 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:53:02.158 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:53:02.158 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:53:02.158 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:53:02.158 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:53:02.158 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:53:02.158 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:53:02.158 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:53:02.158 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:53:02.158 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:53:02.158 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:53:02.168 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:53:02.168 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:53:02.168 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:53:02.168 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:53:02.178 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:53:02.178 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 17:53:02.178 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 17:53:02.178 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 17:53:02.178 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 36281 150\n [Camera]
17-03-17 17:53:02.378 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:53:02.768 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:53:02.768 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:53:02.768 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:53:02.768 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:53:02.768 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:53:02.768 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:53:02.868 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:53:02.868 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2298580584, 0x0, 391868352) start.
17-03-17 17:53:02.878 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:53:02.878 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 17:53:02.958 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36281 775
17-03-17 17:53:03.108 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:53:03.268 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2298580584, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 17:53:03.268 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 17:53:03.268 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:53:03.268 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 17:53:03.268 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 17:53:03.268 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:53:03.278 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:53:03.278 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 508 ms.
17-03-17 17:53:03.278 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:53:03.278 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 511 ms.
17-03-17 17:53:03.298 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:53:03.298 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:53:03.298 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:53:03.298 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:53:03.298 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:53:03.298 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:53:03.308 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:53:03.308 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 17:53:03.308 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:53:03.308 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) start.
17-03-17 17:53:03.488 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:53:03.488 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:53:03.488 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 36281 150' command took 2 ms to send, 1306 ms to get response, and 1313 ms overall
17-03-17 17:53:03.708 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 17:53:03.708 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 17:53:03.708 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:53:03.708 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 17:53:03.708 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 17:53:03.708 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:53:03.708 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:53:03.708 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 17:53:03.708 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 17:53:03.708 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:53:03.718 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 17:53:03.748 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 17:53:03.748 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 17:53:03.798 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-17 17:53:03.798 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-17 17:53:03.798 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 17:53:03.798 -07 000000626 INF: FPGA: Recv EMCUR 
17-03-17 17:53:03.808 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:53:03.808 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-17 17:53:04.308 -07 000000547 INF: FPGA: Recv EMIN
17-03-17 17:53:04.308 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 492 ms to get response, and 502 ms overall
17-03-17 17:53:04.308 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-17 17:53:04.308 -07 000000626 INF: FPGA: Recv EMCUR 
17-03-17 17:53:04.318 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:53:04.318 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:53:04.318 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83251953125, Z-Position -0.16528641279132. ------
17-03-17 17:53:04.318 -07 000000424 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:53:04.318 -07 000000627 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.13964 mm
17-03-17 17:53:04.318 -07 000000627 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:53:04.318 -07 000000551 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 17:53:04.318 -07 000000626 INF: Z Motor: Entering MoveAbsStepped (DAC = 30504, sync = True, waitForSettling = False)
17-03-17 17:53:04.318 -07 000000626 INF: Z Motor: Moving to -0.139638 mm, started at -0.165286 mm, distance = 25.65 um
17-03-17 17:53:04.318 -07 000000551 INF: Y Motor: Moving to 59.9126 mm, started at 74.8325 mm, delta = -14.9199 mm
17-03-17 17:53:04.318 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:53:04.328 -07 000000424 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:53:04.328 -07 000000626 INF: FPGA: Xmit ZDACW 30504\n [Z Motor]
17-03-17 17:53:04.328 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 17:53:04.338 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:53:04.338 -07 000000626 INF: FPGA: 'ZDACW 30504' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 17:53:04.338 -07 000000547 INF: FPGA: Recv YRDPOS 153258
17-03-17 17:53:04.348 -07 000000424 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:53:04.348 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 17:53:04.348 -07 000000551 INF: Y Motor: Encoder = 153258 = motor step 119732.8 = 74.8330 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:53:04.348 -07 000000551 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-17 17:53:04.348 -07 000000551 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 17:53:04.358 -07 000000626 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:53:04.358 -07 000000547 INF: FPGA: Recv ZDACR 30504
17-03-17 17:53:04.368 -07 000000551 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 17:53:04.368 -07 000000626 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:53:04.368 -07 000000626 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-17 17:53:04.548 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:53:04.548 -07 000000424 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 17:53:05.998 -07 000000424 INF: FPGA: Recv YMVTO 122703 23903
17-03-17 17:53:05.998 -07 000000551 INF: FPGA: 'YMVTO 122701' command took 2 ms to send, 1620 ms to get response, and 1647 ms overall
17-03-17 17:53:05.998 -07 000000551 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 17:53:05.998 -07 000000551 INF: Y Motor: To move from 74.833 to 59.913 (-14.920 mm) should take 23873 steps, but required 23903 steps (14.939 mm). Slippage = 0.019 mm (0.00%).
17-03-17 17:53:05.998 -07 000000551 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1648 ms, distance = 14.920 mm, average velocity = 9.053 mm/sec
17-03-17 17:53:06.538 -07 000000424 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:53:06.538 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 5. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=54, R2=62, Total=116. Warn if over 250 bubbles per interval.
17-03-17 17:53:06.628 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 6, FrontChillerTemperature: 3.964938,
17-03-17 17:53:08.848 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:53:08.848 -07 000000547 INF: FPGA: Recv YRDPOS 122701
17-03-17 17:53:08.858 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:53:08.858 -07 000000551 INF: Y Motor: Encoder = 122701 = motor step 95860.2 = 59.9126 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:53:08.878 -07 000000551 INF: Y Motor: After move to 59.912609, error = -0.000011, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:53:08.878 -07 000000551 INF: Y Motor: Position error after settling = 0 encoder counts (0.000 mm), Delta during settling = -2 counts (-0.001 mm)
17-03-17 17:53:08.878 -07 000000551 INF: Y Motor: Moved to 59.9126 after 4559 ms
17-03-17 17:53:08.878 -07 000000627 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139638 mm (DAC = 30504)
17-03-17 17:53:08.878 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:08.888 -07 000000547 INF: FPGA: Recv ZSGSRD 31028
17-03-17 17:53:08.888 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 17:53:08.888 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:08.888 -07 000000459 INF: FPGA: Recv ZSGSRD 31029
17-03-17 17:53:08.898 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:53:08.898 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:08.898 -07 000000424 INF: FPGA: Recv ZSGSRD 31029
17-03-17 17:53:08.908 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:08.908 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:08.908 -07 000000547 INF: FPGA: Recv ZSGSRD 31025
17-03-17 17:53:08.918 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:08.918 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:08.918 -07 000000433 INF: FPGA: Recv ZSGSRD 31024
17-03-17 17:53:08.928 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:08.928 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:08.928 -07 000000593 INF: FPGA: Recv ZSGSRD 31028
17-03-17 17:53:08.938 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:08.938 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:08.938 -07 000000623 INF: FPGA: Recv ZSGSRD 31027
17-03-17 17:53:08.948 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:08.948 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:08.948 -07 000000459 INF: FPGA: Recv ZSGSRD 31021
17-03-17 17:53:08.958 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:08.958 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:08.958 -07 000000623 INF: FPGA: Recv ZSGSRD 31027
17-03-17 17:53:08.968 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:08.968 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:08.968 -07 000000459 INF: FPGA: Recv ZSGSRD 31024
17-03-17 17:53:08.978 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:08.978 -07 000000627 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:53:08.978 -07 000000409 INF: FPGA: Recv ZPIEZORD 26545
17-03-17 17:53:08.988 -07 000000627 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:08.988 -07 000000627 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 46.5 V, since DAC is at 4.655 V. Piezo Error = -9.8 V.
17-03-17 17:53:08.988 -07 000000627 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.6 um, Read 10 ADC samples: Avg = 31026 (-138.8 uncal um), Error = 0.8 uncal um, Median = 31027 (-138.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 31021 (-138.8 uncal um), Max = 31029 (-138.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:53:08.988 -07 000000627 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31026, posNoise = 3, negNoise = 5
17-03-17 17:53:08.988 -07 000000627 INF: Z Motor: After move to -0.139638, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:53:08.988 -07 000000627 INF: Z Motor: Settle wait time = 4562 ms, measure time = 101 ms (allowed 150 ms), total time = 4663 ms
17-03-17 17:53:08.988 -07 000000627 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 17:53:09.038 -07 000000627 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4715 ms
17-03-17 17:53:09.038 -07 000000627 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:53:09.038 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:53:09.038 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:53:09.038 -07 000000409 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:53:09.038 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:53:09.038 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:53:09.038 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:53:09.038 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:53:09.048 -07 000000409 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 17:53:09.068 -07 000000409 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 19 ms.
17-03-17 17:53:09.068 -07 000000409 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:53:09.068 -07 000000409 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:53:09.068 -07 000000409 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:53:09.068 -07 000000409 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 17:53:09.068 -07 000000409 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 32 ms.
17-03-17 17:53:09.078 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:53:09.118 -07 000000482 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:53:09.318 -07 000000623 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:53:09.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:53:09.318 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:53:09.318 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2182910056, 0x0, 559484976) start.
17-03-17 17:53:09.358 -07 000000627 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:53:09.358 -07 000000482 INF: FPGA: Recv CAMSNAP
17-03-17 17:53:09.358 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 17:53:09.438 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2182910056, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 17:53:09.438 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:53:09.438 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:53:09.438 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 17:53:09.458 -07 000000551 INF: Image SNR check: start
17-03-17 17:53:09.458 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:53:09.458 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:53:09.468 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:53:09.468 -07 000000429 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:53:09.478 -07 000000551 INF: Image SNR check: pass  [peak (Max-Min)=63.24]
17-03-17 17:53:09.478 -07 000000551 INF: Autofocus start
17-03-17 17:53:09.478 -07 000000551 INF: MeasureProfile start
17-03-17 17:53:09.488 -07 000000551 INF: MeasureProfile done
17-03-17 17:53:09.488 -07 000000551 INF: X=80  Z correction [um]=0.3608828
17-03-17 17:53:09.488 -07 000000551 INF: Autofocus finished
17-03-17 17:53:09.668 -07 000000541 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:53:09.668 -07 000000429 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:53:09.668 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91259765625, Z-position -0.13964095792141. ----------
17-03-17 17:53:09.678 -07 000000610 INF: Cycle	6	Tile	1	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:53:09.678 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29095, sync = True, waitForSettling = True)
17-03-17 17:53:09.678 -07 000000610 INF: Z Motor: Moving to -0.133188 mm, started at -0.139641 mm, distance = 6.45 um
17-03-17 17:53:09.678 -07 000000610 INF: FPGA: Xmit ZDACW 29095\n [Z Motor]
17-03-17 17:53:09.678 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 17:53:09.688 -07 000000610 INF: FPGA: 'ZDACW 29095' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:53:09.688 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:53:09.688 -07 000000626 INF: FPGA: Recv ZDACR 29095
17-03-17 17:53:09.698 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:09.698 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:53:09.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:09.848 -07 000000429 INF: FPGA: Recv ZSGSRD 30025
17-03-17 17:53:09.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:09.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:09.858 -07 000000626 INF: FPGA: Recv ZSGSRD 30026
17-03-17 17:53:09.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:09.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:09.868 -07 000000429 INF: FPGA: Recv ZSGSRD 30016
17-03-17 17:53:09.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:09.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:09.878 -07 000000627 INF: FPGA: Recv ZSGSRD 30024
17-03-17 17:53:09.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:09.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:09.888 -07 000000429 INF: FPGA: Recv ZSGSRD 30022
17-03-17 17:53:09.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:09.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:09.898 -07 000000541 INF: FPGA: Recv ZSGSRD 30026
17-03-17 17:53:09.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:09.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:09.908 -07 000000627 INF: FPGA: Recv ZSGSRD 30024
17-03-17 17:53:09.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:09.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:09.918 -07 000000429 INF: FPGA: Recv ZSGSRD 30025
17-03-17 17:53:09.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:09.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:09.928 -07 000000593 INF: FPGA: Recv ZSGSRD 30024
17-03-17 17:53:09.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:09.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:09.938 -07 000000627 INF: FPGA: Recv ZSGSRD 30020
17-03-17 17:53:09.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:09.948 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:53:09.948 -07 000000482 INF: FPGA: Recv ZPIEZORD 25454
17-03-17 17:53:09.958 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:09.958 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.440 V. Piezo Error = -10.0 V.
17-03-17 17:53:09.958 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.2 um, Read 10 ADC samples: Avg = 30023 (-132.4 uncal um), Error = 0.8 uncal um, Median = 30024 (-132.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30016 (-132.4 uncal um), Max = 30026 (-132.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 17:53:09.958 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30023, posNoise = 3, negNoise = 7
17-03-17 17:53:09.958 -07 000000610 INF: Z Motor: After move to -0.133188, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:53:09.958 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 17:53:09.958 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:53:09.958 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:53:09.958 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:53:09.958 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:53:09.958 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:53:09.958 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:53:09.958 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:53:09.958 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:53:09.958 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:53:09.958 -07 000000459 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 17:53:09.958 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:53:09.958 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:53:09.968 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:53:09.968 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:53:09.978 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:53:09.978 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 17:53:09.978 -07 000000459 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 20 ms.
17-03-17 17:53:09.988 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:53:09.988 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:53:09.988 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:53:09.998 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 17:53:09.998 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 33 ms.
17-03-17 17:53:09.998 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 29272 150\n [Camera]
17-03-17 17:53:10.198 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:53:10.588 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:53:10.588 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:53:10.588 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:53:10.588 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:53:10.588 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 17:53:10.588 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:53:10.588 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:53:10.588 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:53:10.588 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:53:10.588 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2239612688, 0x0, 418435064) start.
17-03-17 17:53:10.778 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29272 775
17-03-17 17:53:10.928 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:53:10.968 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2239612688, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 17:53:10.968 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 17:53:10.968 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 17:53:10.968 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:53:10.968 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 17:53:10.968 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:53:10.968 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:53:10.968 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 17:53:10.968 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:53:10.978 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 17:53:11.118 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1115
17-03-17 17:53:11.118 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1115
17-03-17 17:53:11.118 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:53:11.118 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:53:11.118 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1048252464, 0x0, 391868352) start.
17-03-17 17:53:11.118 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1115
17-03-17 17:53:11.118 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1115
17-03-17 17:53:11.128 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:53:11.128 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:53:11.128 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1083674728, 0x0, 418435064) start.
17-03-17 17:53:11.308 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:53:11.308 -07 000000482 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:53:11.308 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 29272 150' command took 2 ms to send, 1305 ms to get response, and 1312 ms overall
17-03-17 17:53:11.308 -07 000000610 INF: Skipping AutoFocus in Tile 2: adopting Best-Z from the cache: -0.133692
17-03-17 17:53:11.308 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13369 mm
17-03-17 17:53:11.308 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:53:11.318 -07 000000551 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 17:53:11.318 -07 000000551 INF: Y Motor: Moving to 60.7426 mm, started at 59.9126 mm, delta = 0.8300 mm
17-03-17 17:53:11.318 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:53:11.318 -07 000000433 INF: Z Motor: Entering MoveAbsStepped (DAC = 29205, sync = True, waitForSettling = False)
17-03-17 17:53:11.318 -07 000000433 INF: Z Motor: Moving to -0.133692 mm, started at -0.133197 mm, distance = -0.49 um
17-03-17 17:53:11.318 -07 000000482 INF: FPGA: Recv YRDPOS 122701
17-03-17 17:53:11.328 -07 000000433 INF: FPGA: Xmit ZDACW 29205\n [Z Motor]
17-03-17 17:53:11.328 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:11.328 -07 000000551 INF: Y Motor: Encoder = 122701 = motor step 95860.2 = 59.9126 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:53:11.328 -07 000000551 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:53:11.328 -07 000000551 INF: Y Motor: Moving 1328 steps2
17-03-17 17:53:11.328 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 17:53:11.338 -07 000000433 INF: FPGA: 'ZDACW 29205' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:53:11.338 -07 000000551 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:53:11.348 -07 000000433 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:53:11.348 -07 000000482 INF: FPGA: Recv ZDACR 29205
17-03-17 17:53:11.358 -07 000000433 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:53:11.358 -07 000000433 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-17 17:53:11.508 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1083674728, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 17:53:11.508 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 17:53:11.508 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:53:11.508 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1048252464, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 17:53:11.508 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 17:53:11.508 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:53:11.508 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:53:11.518 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:53:11.518 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 17:53:11.518 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 17:53:11.538 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:53:11.538 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 5. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=54, R2=62, Total=116. Warn if over 250 bubbles per interval.
17-03-17 17:53:11.718 -07 000000482 INF: FPGA: Recv YMVTILE
17-03-17 17:53:11.718 -07 000000551 INF: FPGA: 'YMVTILE 1327' command took 2 ms to send, 373 ms to get response, and 392 ms overall
17-03-17 17:53:11.738 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:53:11.748 -07 000000623 INF: FPGA: Recv YRDPOS 124383
17-03-17 17:53:11.748 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 17:53:11.748 -07 000000551 INF: Y Motor: Encoder = 124383 = motor step 97174.2 = 60.7339 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:53:11.748 -07 000000551 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 17:53:11.748 -07 000000551 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.830 mm, average velocity = 2.117 mm/sec
17-03-17 17:53:11.988 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 6, FrontChillerTemperature: 3.978563,
17-03-17 17:53:12.698 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:53:12.698 -07 000000623 INF: FPGA: Recv YRDPOS 124384
17-03-17 17:53:12.708 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:53:12.708 -07 000000551 INF: Y Motor: Encoder = 124384 = motor step 97175.0 = 60.7344 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:53:12.718 -07 000000551 INF: Y Motor: After move to 60.742607, error = -0.008232, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:53:12.718 -07 000000551 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 17:53:12.728 -07 000000551 INF: Y Motor: Moved to 60.7344 after 1410 ms (table move)
17-03-17 17:53:12.728 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133692 mm (DAC = 29205)
17-03-17 17:53:12.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:12.728 -07 000000429 INF: FPGA: Recv ZSGSRD 30107
17-03-17 17:53:12.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:53:12.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:12.738 -07 000000486 INF: FPGA: Recv ZSGSRD 30089
17-03-17 17:53:12.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:12.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:12.748 -07 000000551 INF: FPGA: Recv ZSGSRD 30109
17-03-17 17:53:12.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:12.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:12.758 -07 000000486 INF: FPGA: Recv ZSGSRD 30110
17-03-17 17:53:12.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:12.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:12.768 -07 000000482 INF: FPGA: Recv ZSGSRD 30101
17-03-17 17:53:12.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:12.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:12.778 -07 000000576 INF: FPGA: Recv ZSGSRD 30094
17-03-17 17:53:12.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:12.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:12.788 -07 000000623 INF: FPGA: Recv ZSGSRD 30100
17-03-17 17:53:12.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:12.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:12.798 -07 000000551 INF: FPGA: Recv ZSGSRD 30096
17-03-17 17:53:12.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:12.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:12.808 -07 000000623 INF: FPGA: Recv ZSGSRD 30101
17-03-17 17:53:12.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:12.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:12.818 -07 000000486 INF: FPGA: Recv ZSGSRD 30102
17-03-17 17:53:12.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:12.828 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:53:12.828 -07 000000623 INF: FPGA: Recv ZPIEZORD 25605
17-03-17 17:53:12.838 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:12.838 -07 000000610 INF: Z Motor: Piezo is near 34.7 V (nominally 0 to 100 V), expect near 44.6 V, since DAC is at 4.456 V. Piezo Error = -9.9 V.
17-03-17 17:53:12.838 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.7 um, Read 10 ADC samples: Avg = 30101 (-132.9 uncal um), Error = 0.8 uncal um, Median = 30101 (-132.9 uncal um), StdDev = 7 (0.0 uncal um), Range = 21 (0.1 uncal um), Min = 30089 (-132.8 uncal um), Max = 30110 (-133.0 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 12 (0.1 uncal um)
17-03-17 17:53:12.838 -07 000000610 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30101, posNoise = 9, negNoise = 12
17-03-17 17:53:12.838 -07 000000610 INF: Z Motor: After move to -0.133692, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:53:12.838 -07 000000610 INF: Z Motor: Settle wait time = 1412 ms, measure time = 108 ms (allowed 150 ms), total time = 1520 ms
17-03-17 17:53:12.838 -07 000000610 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 17:53:12.888 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1572 ms
17-03-17 17:53:12.888 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:53:12.888 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.734375, Z-position -0.133698561690282. ----------
17-03-17 17:53:12.888 -07 000000610 INF: Cycle	6	Tile	2	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:53:12.888 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29028, sync = True, waitForSettling = True)
17-03-17 17:53:12.888 -07 000000610 INF: Z Motor: Moving to -0.132882 mm, started at -0.133699 mm, distance = 0.82 um
17-03-17 17:53:12.888 -07 000000610 INF: FPGA: Xmit ZDACW 29028\n [Z Motor]
17-03-17 17:53:12.888 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 17:53:12.898 -07 000000610 INF: FPGA: 'ZDACW 29028' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 17:53:12.898 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:53:12.898 -07 000000551 INF: FPGA: Recv ZDACR 29028
17-03-17 17:53:12.908 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:12.908 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:53:13.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:13.058 -07 000000429 INF: FPGA: Recv ZSGSRD 29980
17-03-17 17:53:13.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:53:13.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:13.068 -07 000000433 INF: FPGA: Recv ZSGSRD 29979
17-03-17 17:53:13.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:13.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:13.078 -07 000000429 INF: FPGA: Recv ZSGSRD 29974
17-03-17 17:53:13.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:13.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:13.088 -07 000000482 INF: FPGA: Recv ZSGSRD 29971
17-03-17 17:53:13.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:13.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:13.098 -07 000000623 INF: FPGA: Recv ZSGSRD 29977
17-03-17 17:53:13.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:13.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:13.108 -07 000000486 INF: FPGA: Recv ZSGSRD 29974
17-03-17 17:53:13.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:13.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:13.118 -07 000000482 INF: FPGA: Recv ZSGSRD 29969
17-03-17 17:53:13.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:13.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:13.128 -07 000000486 INF: FPGA: Recv ZSGSRD 29977
17-03-17 17:53:13.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:13.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:13.138 -07 000000576 INF: FPGA: Recv ZSGSRD 29973
17-03-17 17:53:13.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:13.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:13.148 -07 000000486 INF: FPGA: Recv ZSGSRD 29974
17-03-17 17:53:13.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:13.158 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:53:13.158 -07 000000482 INF: FPGA: Recv ZPIEZORD 25465
17-03-17 17:53:13.168 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:13.168 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.429 V. Piezo Error = -9.9 V.
17-03-17 17:53:13.168 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.9 um, Read 10 ADC samples: Avg = 29975 (-132.1 uncal um), Error = 0.8 uncal um, Median = 29974 (-132.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29969 (-132.1 uncal um), Max = 29980 (-132.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:53:13.168 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29975, posNoise = 5, negNoise = 6
17-03-17 17:53:13.168 -07 000000610 INF: Z Motor: After move to -0.132882, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:53:13.168 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 17:53:13.168 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:53:13.168 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:53:13.168 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:53:13.168 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:53:13.168 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:53:13.168 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:53:13.168 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:53:13.168 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:53:13.168 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:53:13.168 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:53:13.168 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 17:53:13.168 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:53:13.178 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 5 ms.
17-03-17 17:53:13.178 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:53:13.178 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:53:13.178 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:53:13.188 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 17:53:13.188 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 17:53:13.188 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 17:53:13.188 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 17:53:13.188 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 29205 150\n [Camera]
17-03-17 17:53:13.388 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:53:13.778 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:53:13.778 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:53:13.788 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:53:13.788 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:53:13.788 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1119096992, 0x0, 391868352) start.
17-03-17 17:53:13.788 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:53:13.788 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:53:13.788 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:53:13.788 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:53:13.788 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 17:53:13.978 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29205 775
17-03-17 17:53:14.128 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:53:14.188 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1119096992, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 17:53:14.188 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 17:53:14.188 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:53:14.188 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:53:14.188 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 17:53:14.188 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 17:53:14.188 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 17:53:14.188 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:53:14.198 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:53:14.198 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 17:53:14.318 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:53:14.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:53:14.318 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:53:14.318 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:53:14.318 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 17:53:14.318 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:53:14.318 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:53:14.318 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:53:14.318 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:53:14.318 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 17:53:14.508 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:53:14.508 -07 000000431 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:53:14.508 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 29205 150' command took 2 ms to send, 1302 ms to get response, and 1312 ms overall
17-03-17 17:53:14.508 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:53:14.508 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.734375, Z-Position -0.13288911096042. ------
17-03-17 17:53:14.508 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:53:14.508 -07 000000429 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13964 mm
17-03-17 17:53:14.508 -07 000000429 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:53:14.518 -07 000000486 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 17:53:14.518 -07 000000486 INF: Y Motor: Moving to 61.5726 mm, started at 60.7344 mm, delta = 0.8382 mm
17-03-17 17:53:14.518 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:53:14.518 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 30504, sync = True, waitForSettling = False)
17-03-17 17:53:14.518 -07 000000576 INF: Z Motor: Moving to -0.139638 mm, started at -0.132889 mm, distance = -6.75 um
17-03-17 17:53:14.518 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:53:14.518 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 4 ms to get response, and 6 ms overall
17-03-17 17:53:14.518 -07 000000424 INF: FPGA: Recv YRDPOS 124384
17-03-17 17:53:14.528 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:53:14.528 -07 000000486 INF: Y Motor: Encoder = 124384 = motor step 97175.0 = 60.7344 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:53:14.528 -07 000000486 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:53:14.528 -07 000000486 INF: Y Motor: Moving 1341 steps-18
17-03-17 17:53:14.528 -07 000000482 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:53:14.538 -07 000000576 INF: FPGA: Xmit ZDACW 30504\n [Z Motor]
17-03-17 17:53:14.538 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 17:53:14.548 -07 000000486 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:53:14.548 -07 000000576 INF: FPGA: 'ZDACW 30504' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 17:53:14.558 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:53:14.558 -07 000000541 INF: FPGA: Recv ZDACR 30504
17-03-17 17:53:14.568 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:53:14.568 -07 000000576 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-17 17:53:14.718 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 17:53:14.718 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 17:53:14.718 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:53:14.718 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 17:53:14.718 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 17:53:14.718 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:53:14.718 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:53:14.718 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 17:53:14.728 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:53:14.728 -07 000000431 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:53:14.728 -07 000000482 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 208 ms overall
17-03-17 17:53:14.728 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 17:53:14.918 -07 000000593 INF: FPGA: Recv YMVTILE
17-03-17 17:53:14.918 -07 000000486 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 17:53:14.948 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:53:14.958 -07 000000482 INF: FPGA: Recv YRDPOS 126085
17-03-17 17:53:14.958 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 17:53:14.958 -07 000000486 INF: Y Motor: Encoder = 126085 = motor step 98503.9 = 61.5649 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:53:14.958 -07 000000486 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 17:53:14.958 -07 000000486 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.111 mm/sec
17-03-17 17:53:15.908 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:53:15.908 -07 000000623 INF: FPGA: Recv YRDPOS 126085
17-03-17 17:53:15.918 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:53:15.918 -07 000000486 INF: Y Motor: Encoder = 126085 = motor step 98503.9 = 61.5649 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:53:15.928 -07 000000486 INF: Y Motor: After move to 61.572609, error = -0.007668, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:53:15.928 -07 000000486 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:53:15.928 -07 000000486 INF: Y Motor: Moved to 61.5649 after 1416 ms (table move)
17-03-17 17:53:15.938 -07 000000429 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139638 mm (DAC = 30504)
17-03-17 17:53:15.938 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:15.938 -07 000000433 INF: FPGA: Recv ZSGSRD 31019
17-03-17 17:53:15.948 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:53:15.948 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:15.948 -07 000000547 INF: FPGA: Recv ZSGSRD 31021
17-03-17 17:53:15.958 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:15.958 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:15.958 -07 000000486 INF: FPGA: Recv ZSGSRD 31026
17-03-17 17:53:15.968 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:15.968 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:15.968 -07 000000547 INF: FPGA: Recv ZSGSRD 31024
17-03-17 17:53:15.978 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:15.978 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:15.978 -07 000000433 INF: FPGA: Recv ZSGSRD 31027
17-03-17 17:53:15.988 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:15.988 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:15.988 -07 000000547 INF: FPGA: Recv ZSGSRD 31034
17-03-17 17:53:15.998 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:15.998 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:15.998 -07 000000623 INF: FPGA: Recv ZSGSRD 31035
17-03-17 17:53:16.008 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:16.008 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:16.008 -07 000000486 INF: FPGA: Recv ZSGSRD 31034
17-03-17 17:53:16.018 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:16.018 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:16.018 -07 000000433 INF: FPGA: Recv ZSGSRD 31027
17-03-17 17:53:16.028 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:16.028 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:16.028 -07 000000433 INF: FPGA: Recv ZSGSRD 31023
17-03-17 17:53:16.038 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:16.038 -07 000000429 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:53:16.038 -07 000000486 INF: FPGA: Recv ZPIEZORD 26831
17-03-17 17:53:16.048 -07 000000429 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:16.048 -07 000000429 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.5 V, since DAC is at 4.655 V. Piezo Error = -9.2 V.
17-03-17 17:53:16.048 -07 000000429 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.6 um, Read 10 ADC samples: Avg = 31027 (-138.8 uncal um), Error = 0.8 uncal um, Median = 31026 (-138.8 uncal um), StdDev = 6 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 31019 (-138.8 uncal um), Max = 31035 (-138.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 17:53:16.048 -07 000000429 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31027, posNoise = 8, negNoise = 8
17-03-17 17:53:16.048 -07 000000429 INF: Z Motor: After move to -0.139638, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:53:16.048 -07 000000429 INF: Z Motor: Settle wait time = 1417 ms, measure time = 109 ms (allowed 150 ms), total time = 1526 ms
17-03-17 17:53:16.048 -07 000000429 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 17:53:16.098 -07 000000429 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1581 ms
17-03-17 17:53:16.098 -07 000000429 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:53:16.098 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:53:16.098 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:53:16.098 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:53:16.098 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:53:16.098 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:53:16.098 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:53:16.098 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 17:53:16.098 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:53:16.108 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:53:16.108 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:53:16.118 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 17:53:16.118 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 17:53:16.118 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:53:16.168 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:53:16.368 -07 000000486 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:53:16.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:53:16.368 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:53:16.368 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 619151688, 0x0, 559484976) start.
17-03-17 17:53:16.408 -07 000000433 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:53:16.408 -07 000000623 INF: FPGA: Recv CAMSNAP
17-03-17 17:53:16.408 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 17:53:16.488 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 619151688, 0x0, 559484976) end. Duration was 124 ms.
17-03-17 17:53:16.488 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:53:16.498 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:53:16.498 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-17 17:53:16.508 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:53:16.508 -07 000000429 INF: Autofocus start
17-03-17 17:53:16.508 -07 000000429 INF: MeasureProfile start
17-03-17 17:53:16.508 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:53:16.518 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:53:16.518 -07 000000486 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:53:16.518 -07 000000429 INF: MeasureProfile done
17-03-17 17:53:16.518 -07 000000429 INF: X=-32  Z correction [um]=-0.1591732
17-03-17 17:53:16.518 -07 000000429 INF: Autofocus finished
17-03-17 17:53:16.538 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:53:16.538 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 5. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=54, R2=62, Total=116. Warn if over 250 bubbles per interval.
17-03-17 17:53:16.718 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:53:16.718 -07 000000486 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-17 17:53:16.718 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56494140625, Z-position -0.139647382133552. ----------
17-03-17 17:53:16.718 -07 000000610 INF: Cycle	6	Tile	3	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:53:16.728 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28982, sync = True, waitForSettling = True)
17-03-17 17:53:16.728 -07 000000610 INF: Z Motor: Moving to -0.132671 mm, started at -0.139647 mm, distance = 6.98 um
17-03-17 17:53:16.728 -07 000000610 INF: FPGA: Xmit ZDACW 28982\n [Z Motor]
17-03-17 17:53:16.728 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 17:53:16.738 -07 000000610 INF: FPGA: 'ZDACW 28982' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:53:16.738 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:53:16.738 -07 000000486 INF: FPGA: Recv ZDACR 28982
17-03-17 17:53:16.748 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:16.748 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:53:16.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:16.898 -07 000000433 INF: FPGA: Recv ZSGSRD 29941
17-03-17 17:53:16.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:16.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:16.908 -07 000000486 INF: FPGA: Recv ZSGSRD 29942
17-03-17 17:53:16.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:16.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:16.918 -07 000000486 INF: FPGA: Recv ZSGSRD 29936
17-03-17 17:53:16.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:16.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:16.928 -07 000000623 INF: FPGA: Recv ZSGSRD 29944
17-03-17 17:53:16.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:16.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:16.938 -07 000000429 INF: FPGA: Recv ZSGSRD 29935
17-03-17 17:53:16.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:16.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:16.948 -07 000000486 INF: FPGA: Recv ZSGSRD 29943
17-03-17 17:53:16.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:16.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:16.958 -07 000000486 INF: FPGA: Recv ZSGSRD 29938
17-03-17 17:53:16.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:16.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:16.968 -07 000000486 INF: FPGA: Recv ZSGSRD 29942
17-03-17 17:53:16.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:16.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:16.978 -07 000000486 INF: FPGA: Recv ZSGSRD 29939
17-03-17 17:53:16.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:16.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:16.988 -07 000000547 INF: FPGA: Recv ZSGSRD 29941
17-03-17 17:53:16.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:16.998 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:53:16.998 -07 000000547 INF: FPGA: Recv ZPIEZORD 25449
17-03-17 17:53:17.008 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:17.008 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.422 V. Piezo Error = -9.9 V.
17-03-17 17:53:17.008 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.7 um, Read 10 ADC samples: Avg = 29940 (-131.9 uncal um), Error = 0.8 uncal um, Median = 29941 (-131.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29935 (-131.8 uncal um), Max = 29944 (-131.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:53:17.008 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29940, posNoise = 4, negNoise = 5
17-03-17 17:53:17.008 -07 000000610 INF: Z Motor: After move to -0.132671, error = 0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:53:17.008 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 17:53:17.008 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:53:17.008 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:53:17.008 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:53:17.008 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:53:17.008 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:53:17.008 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:53:17.008 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:53:17.008 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:53:17.008 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:53:17.008 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:53:17.008 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 17:53:17.008 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:53:17.018 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:53:17.018 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:53:17.018 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:53:17.018 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:53:17.028 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:53:17.028 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 17:53:17.028 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 17:53:17.028 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 17:53:17.028 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 29159 150\n [Camera]
17-03-17 17:53:17.228 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:53:17.358 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 6, FrontChillerTemperature: 3.962185,
17-03-17 17:53:17.618 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:53:17.618 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:53:17.618 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:53:17.618 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:53:17.618 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 17:53:17.618 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:53:17.618 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:53:17.618 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:53:17.618 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:53:17.618 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 17:53:17.808 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29159 775
17-03-17 17:53:17.958 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:53:17.998 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 17:53:17.998 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 17:53:17.998 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:53:17.998 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 17:53:17.998 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 17:53:17.998 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:53:17.998 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:53:17.998 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 17:53:18.008 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:53:18.008 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 17:53:18.148 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:53:18.148 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:53:18.148 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:53:18.148 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:53:18.148 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:53:18.148 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:53:18.158 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:53:18.158 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 17:53:18.158 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:53:18.158 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 17:53:18.338 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP 1308
17-03-17 17:53:18.338 -07 000000593 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:53:18.338 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 29159 150' command took 2 ms to send, 1307 ms to get response, and 1315 ms overall
17-03-17 17:53:18.338 -07 000000610 INF: Skipping AutoFocus in Tile 4: adopting Best-Z from the cache: -0.133012
17-03-17 17:53:18.348 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13301 mm
17-03-17 17:53:18.348 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:53:18.348 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 17:53:18.348 -07 000000623 INF: Y Motor: Moving to 62.4026 mm, started at 61.5649 mm, delta = 0.8377 mm
17-03-17 17:53:18.348 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:53:18.348 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 29056, sync = True, waitForSettling = False)
17-03-17 17:53:18.348 -07 000000576 INF: Z Motor: Moving to -0.133010 mm, started at -0.132664 mm, distance = -0.35 um
17-03-17 17:53:18.348 -07 000000593 INF: FPGA: Recv YRDPOS 126086
17-03-17 17:53:18.358 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:53:18.358 -07 000000623 INF: Y Motor: Encoder = 126086 = motor step 98504.7 = 61.5654 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:53:18.358 -07 000000576 INF: FPGA: Xmit ZDACW 29056\n [Z Motor]
17-03-17 17:53:18.358 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 17:53:18.358 -07 000000623 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:53:18.358 -07 000000623 INF: Y Motor: Moving 1339 steps-16
17-03-17 17:53:18.368 -07 000000576 INF: FPGA: 'ZDACW 29056' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 17:53:18.368 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:53:18.378 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:53:18.378 -07 000000429 INF: FPGA: Recv ZDACR 29056
17-03-17 17:53:18.388 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:53:18.388 -07 000000576 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-17 17:53:18.528 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 17:53:18.538 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 17:53:18.538 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:53:18.538 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:53:18.538 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 17:53:18.538 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 17:53:18.538 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 17:53:18.538 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:53:18.548 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:53:18.548 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 17:53:18.738 -07 000000433 INF: FPGA: Recv YMVTILE
17-03-17 17:53:18.738 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 383 ms overall
17-03-17 17:53:18.768 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:53:18.778 -07 000000431 INF: FPGA: Recv YRDPOS 127788
17-03-17 17:53:18.788 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:53:18.788 -07 000000623 INF: Y Motor: Encoder = 127788 = motor step 99834.4 = 62.3965 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:53:18.788 -07 000000623 INF: Y Motor: Position error before settling (table move) = -13 encoder counts (-0.006 mm)
17-03-17 17:53:18.788 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 383 ms, distance = 0.838 mm, average velocity = 2.187 mm/sec
17-03-17 17:53:19.738 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:53:19.738 -07 000000433 INF: FPGA: Recv YRDPOS 127788
17-03-17 17:53:19.748 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:53:19.748 -07 000000623 INF: Y Motor: Encoder = 127788 = motor step 99834.4 = 62.3965 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:53:19.758 -07 000000623 INF: Y Motor: After move to 62.402607, error = -0.006123, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:53:19.758 -07 000000623 INF: Y Motor: Position error after settling (table move) = -13 encoder counts (-0.006 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:53:19.758 -07 000000623 INF: Y Motor: Moved to 62.3965 after 1415 ms (table move)
17-03-17 17:53:19.768 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133010 mm (DAC = 29056)
17-03-17 17:53:19.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:19.768 -07 000000486 INF: FPGA: Recv ZSGSRD 29998
17-03-17 17:53:19.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:19.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:19.778 -07 000000623 INF: FPGA: Recv ZSGSRD 29986
17-03-17 17:53:19.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:19.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:19.788 -07 000000486 INF: FPGA: Recv ZSGSRD 29994
17-03-17 17:53:19.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:19.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:19.798 -07 000000623 INF: FPGA: Recv ZSGSRD 29995
17-03-17 17:53:19.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:19.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:19.808 -07 000000486 INF: FPGA: Recv ZSGSRD 30000
17-03-17 17:53:19.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:19.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:19.818 -07 000000486 INF: FPGA: Recv ZSGSRD 29987
17-03-17 17:53:19.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:19.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:19.828 -07 000000623 INF: FPGA: Recv ZSGSRD 29991
17-03-17 17:53:19.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:19.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:19.838 -07 000000429 INF: FPGA: Recv ZSGSRD 29990
17-03-17 17:53:19.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:19.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:19.848 -07 000000433 INF: FPGA: Recv ZSGSRD 29991
17-03-17 17:53:19.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:19.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:19.858 -07 000000429 INF: FPGA: Recv ZSGSRD 29994
17-03-17 17:53:19.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:19.868 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:53:19.868 -07 000000433 INF: FPGA: Recv ZPIEZORD 25565
17-03-17 17:53:19.878 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:19.878 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.434 V. Piezo Error = -9.7 V.
17-03-17 17:53:19.878 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.0 um, Read 10 ADC samples: Avg = 29993 (-132.2 uncal um), Error = 0.8 uncal um, Median = 29992 (-132.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29986 (-132.2 uncal um), Max = 30000 (-132.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 17:53:19.878 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29993, posNoise = 7, negNoise = 7
17-03-17 17:53:19.878 -07 000000610 INF: Z Motor: After move to -0.133010, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:53:19.878 -07 000000610 INF: Z Motor: Settle wait time = 1417 ms, measure time = 110 ms (allowed 150 ms), total time = 1527 ms
17-03-17 17:53:19.878 -07 000000610 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 17:53:19.918 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1569 ms
17-03-17 17:53:19.918 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:53:19.918 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.396484375, Z-position -0.133004746778971. ----------
17-03-17 17:53:19.918 -07 000000610 INF: Cycle	6	Tile	4	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:53:19.918 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28880, sync = True, waitForSettling = True)
17-03-17 17:53:19.918 -07 000000610 INF: Z Motor: Moving to -0.132204 mm, started at -0.133005 mm, distance = 0.80 um
17-03-17 17:53:19.918 -07 000000610 INF: FPGA: Xmit ZDACW 28880\n [Z Motor]
17-03-17 17:53:19.918 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 17:53:19.928 -07 000000610 INF: FPGA: 'ZDACW 28880' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 17:53:19.928 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:53:19.928 -07 000000486 INF: FPGA: Recv ZDACR 28880
17-03-17 17:53:19.938 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:19.938 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:53:20.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:20.088 -07 000000576 INF: FPGA: Recv ZSGSRD 29868
17-03-17 17:53:20.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:53:20.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:20.098 -07 000000623 INF: FPGA: Recv ZSGSRD 29870
17-03-17 17:53:20.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:20.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:20.108 -07 000000576 INF: FPGA: Recv ZSGSRD 29872
17-03-17 17:53:20.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:20.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:20.118 -07 000000433 INF: FPGA: Recv ZSGSRD 29868
17-03-17 17:53:20.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:20.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:20.128 -07 000000486 INF: FPGA: Recv ZSGSRD 29874
17-03-17 17:53:20.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:20.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:20.138 -07 000000623 INF: FPGA: Recv ZSGSRD 29865
17-03-17 17:53:20.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:20.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:20.148 -07 000000576 INF: FPGA: Recv ZSGSRD 29866
17-03-17 17:53:20.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:20.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:20.158 -07 000000429 INF: FPGA: Recv ZSGSRD 29872
17-03-17 17:53:20.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:20.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:20.168 -07 000000623 INF: FPGA: Recv ZSGSRD 29871
17-03-17 17:53:20.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:20.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:20.178 -07 000000576 INF: FPGA: Recv ZSGSRD 29868
17-03-17 17:53:20.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:20.188 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:53:20.188 -07 000000486 INF: FPGA: Recv ZPIEZORD 25400
17-03-17 17:53:20.198 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:20.198 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.407 V. Piezo Error = -9.8 V.
17-03-17 17:53:20.198 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.2 um, Read 10 ADC samples: Avg = 29869 (-131.4 uncal um), Error = 0.8 uncal um, Median = 29869 (-131.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29865 (-131.4 uncal um), Max = 29874 (-131.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:53:20.198 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29869, posNoise = 5, negNoise = 4
17-03-17 17:53:20.198 -07 000000610 INF: Z Motor: After move to -0.132204, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:53:20.198 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 17:53:20.198 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:53:20.198 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:53:20.198 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:53:20.198 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:53:20.198 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:53:20.198 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:53:20.198 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:53:20.198 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:53:20.198 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:53:20.198 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:53:20.198 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 17:53:20.198 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:53:20.208 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:53:20.208 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:53:20.208 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:53:20.208 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:53:20.208 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 17:53:20.208 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:53:20.208 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:53:20.208 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 17:53:20.218 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 29056 150\n [Camera]
17-03-17 17:53:20.418 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:53:20.808 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:53:20.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:53:20.808 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:53:20.808 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:53:20.808 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:53:20.808 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:53:20.918 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:53:20.918 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2298580584, 0x0, 391868352) start.
17-03-17 17:53:20.918 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:53:20.918 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 17:53:20.998 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29056 775
17-03-17 17:53:21.148 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:53:21.298 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2298580584, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 17:53:21.298 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 17:53:21.298 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:53:21.298 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 17:53:21.298 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 17:53:21.298 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:53:21.308 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:53:21.308 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 497 ms.
17-03-17 17:53:21.308 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:53:21.318 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 504 ms.
17-03-17 17:53:21.338 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:53:21.338 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:53:21.338 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:53:21.338 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:53:21.338 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:53:21.338 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:53:21.338 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:53:21.338 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 17:53:21.348 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:53:21.348 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) start.
17-03-17 17:53:21.528 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:53:21.528 -07 000000433 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:53:21.528 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 29056 150' command took 2 ms to send, 1304 ms to get response, and 1312 ms overall
17-03-17 17:53:21.528 -07 000000610 INF: Skipping AutoFocus in Tile 5: adopting Best-Z from the cache: -0.132923
17-03-17 17:53:21.528 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13292 mm
17-03-17 17:53:21.528 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:53:21.528 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 17:53:21.538 -07 000000623 INF: Y Motor: Moving to 63.2326 mm, started at 62.3965 mm, delta = 0.8361 mm
17-03-17 17:53:21.538 -07 000000433 INF: Z Motor: Entering MoveAbsStepped (DAC = 29037, sync = True, waitForSettling = False)
17-03-17 17:53:21.538 -07 000000433 INF: Z Motor: Moving to -0.132923 mm, started at -0.132208 mm, distance = -0.71 um
17-03-17 17:53:21.538 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:53:21.538 -07 000000626 INF: FPGA: Recv YRDPOS 127789
17-03-17 17:53:21.538 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:53:21.538 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 5. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=54, R2=62, Total=116. Warn if over 250 bubbles per interval.
17-03-17 17:53:21.548 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:21.548 -07 000000433 INF: FPGA: Xmit ZDACW 29037\n [Z Motor]
17-03-17 17:53:21.548 -07 000000623 INF: Y Motor: Encoder = 127789 = motor step 99835.2 = 62.3970 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:53:21.548 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 17:53:21.548 -07 000000623 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:53:21.548 -07 000000623 INF: Y Motor: Moving 1337 steps-13
17-03-17 17:53:21.558 -07 000000433 INF: FPGA: 'ZDACW 29037' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:53:21.558 -07 000000433 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:53:21.558 -07 000000482 INF: FPGA: Recv ZDACR 29037
17-03-17 17:53:21.568 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:53:21.568 -07 000000433 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:21.568 -07 000000433 INF: Z Motor: MoveAbsStepped took 30 ms (did NOT wait for settling yet))
17-03-17 17:53:21.718 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 17:53:21.718 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 17:53:21.718 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:53:21.718 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 17:53:21.718 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 17:53:21.718 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:53:21.718 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:53:21.718 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 17:53:21.728 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:53:21.728 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 17:53:21.938 -07 000000482 INF: FPGA: Recv YMVTILE
17-03-17 17:53:21.938 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-17 17:53:21.968 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:53:21.978 -07 000000482 INF: FPGA: Recv YRDPOS 129486
17-03-17 17:53:21.978 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 17:53:21.978 -07 000000623 INF: Y Motor: Encoder = 129486 = motor step 101160.9 = 63.2256 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:53:21.978 -07 000000623 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-17 17:53:21.978 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.836 mm, average velocity = 2.128 mm/sec
17-03-17 17:53:22.728 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 6, FrontChillerTemperature: 3.978563,
17-03-17 17:53:22.928 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:53:22.928 -07 000000429 INF: FPGA: Recv YRDPOS 129486
17-03-17 17:53:22.938 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:53:22.938 -07 000000623 INF: Y Motor: Encoder = 129486 = motor step 101160.9 = 63.2256 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:53:22.948 -07 000000623 INF: Y Motor: After move to 63.232609, error = -0.007023, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:53:22.948 -07 000000623 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:53:22.948 -07 000000623 INF: Y Motor: Moved to 63.2256 after 1418 ms (table move)
17-03-17 17:53:22.958 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.132923 mm (DAC = 29037)
17-03-17 17:53:22.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:22.958 -07 000000623 INF: FPGA: Recv ZSGSRD 29993
17-03-17 17:53:22.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:53:22.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:22.968 -07 000000424 INF: FPGA: Recv ZSGSRD 29979
17-03-17 17:53:22.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:22.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:22.978 -07 000000486 INF: FPGA: Recv ZSGSRD 29972
17-03-17 17:53:22.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:22.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:22.988 -07 000000424 INF: FPGA: Recv ZSGSRD 29982
17-03-17 17:53:22.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:22.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:22.998 -07 000000623 INF: FPGA: Recv ZSGSRD 29979
17-03-17 17:53:23.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:23.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:23.008 -07 000000424 INF: FPGA: Recv ZSGSRD 29990
17-03-17 17:53:23.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:23.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:23.018 -07 000000429 INF: FPGA: Recv ZSGSRD 29982
17-03-17 17:53:23.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:23.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:23.028 -07 000000429 INF: FPGA: Recv ZSGSRD 29983
17-03-17 17:53:23.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:23.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:23.048 -07 000000482 INF: FPGA: Recv ZSGSRD 29973
17-03-17 17:53:23.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:53:23.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:23.068 -07 000000424 INF: FPGA: Recv ZSGSRD 29980
17-03-17 17:53:23.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 17:53:23.078 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:53:23.078 -07 000000424 INF: FPGA: Recv ZPIEZORD 25553
17-03-17 17:53:23.088 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:23.088 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.431 V. Piezo Error = -9.7 V.
17-03-17 17:53:23.088 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.9 um, Read 10 ADC samples: Avg = 29981 (-132.1 uncal um), Error = 0.8 uncal um, Median = 29981 (-132.1 uncal um), StdDev = 7 (0.0 uncal um), Range = 21 (0.1 uncal um), Min = 29972 (-132.1 uncal um), Max = 29993 (-132.2 uncal um), Pos Noise = 12 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 17:53:23.088 -07 000000610 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29981, posNoise = 12, negNoise = 9
17-03-17 17:53:23.088 -07 000000610 INF: Z Motor: After move to -0.132923, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:53:23.088 -07 000000610 INF: Z Motor: Settle wait time = 1420 ms, measure time = 130 ms (allowed 150 ms), total time = 1550 ms
17-03-17 17:53:23.088 -07 000000610 INF: Z Motor: Waiting extra 20 ms after reading position to reach expected total of 150 ms
17-03-17 17:53:23.108 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1572 ms
17-03-17 17:53:23.108 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:53:23.108 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.2255859375, Z-position -0.13292765623327. ----------
17-03-17 17:53:23.108 -07 000000610 INF: Cycle	6	Tile	5	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:53:23.108 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28860, sync = True, waitForSettling = True)
17-03-17 17:53:23.108 -07 000000610 INF: Z Motor: Moving to -0.132113 mm, started at -0.132928 mm, distance = 0.82 um
17-03-17 17:53:23.118 -07 000000610 INF: FPGA: Xmit ZDACW 28860\n [Z Motor]
17-03-17 17:53:23.118 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 17:53:23.128 -07 000000610 INF: FPGA: 'ZDACW 28860' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 17:53:23.128 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:53:23.128 -07 000000576 INF: FPGA: Recv ZDACR 28860
17-03-17 17:53:23.138 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:23.138 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:53:23.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:23.288 -07 000000576 INF: FPGA: Recv ZSGSRD 29852
17-03-17 17:53:23.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:23.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:23.298 -07 000000482 INF: FPGA: Recv ZSGSRD 29854
17-03-17 17:53:23.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:23.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:23.308 -07 000000482 INF: FPGA: Recv ZSGSRD 29856
17-03-17 17:53:23.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:53:23.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:23.318 -07 000000576 INF: FPGA: Recv ZSGSRD 29857
17-03-17 17:53:23.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:23.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:23.328 -07 000000576 INF: FPGA: Recv ZSGSRD 29859
17-03-17 17:53:23.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:23.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:23.338 -07 000000576 INF: FPGA: Recv ZSGSRD 29853
17-03-17 17:53:23.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:23.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:23.348 -07 000000482 INF: FPGA: Recv ZSGSRD 29858
17-03-17 17:53:23.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:23.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:23.358 -07 000000482 INF: FPGA: Recv ZSGSRD 29853
17-03-17 17:53:23.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:23.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:23.368 -07 000000482 INF: FPGA: Recv ZSGSRD 29850
17-03-17 17:53:23.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:23.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:23.378 -07 000000429 INF: FPGA: Recv ZSGSRD 29856
17-03-17 17:53:23.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:23.388 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:53:23.388 -07 000000429 INF: FPGA: Recv ZPIEZORD 25381
17-03-17 17:53:23.398 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:23.398 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.404 V. Piezo Error = -9.8 V.
17-03-17 17:53:23.398 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.1 um, Read 10 ADC samples: Avg = 29855 (-131.3 uncal um), Error = 0.8 uncal um, Median = 29855 (-131.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29850 (-131.3 uncal um), Max = 29859 (-131.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:53:23.398 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29855, posNoise = 4, negNoise = 5
17-03-17 17:53:23.398 -07 000000610 INF: Z Motor: After move to -0.132113, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:53:23.398 -07 000000610 INF: Z Motor: MoveAbsStepped took 287 ms)
17-03-17 17:53:23.398 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:53:23.398 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:53:23.398 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:53:23.398 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:53:23.398 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:53:23.398 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:53:23.398 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:53:23.398 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:53:23.398 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:53:23.398 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:53:23.398 -07 000000626 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:53:23.398 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:53:23.408 -07 000000626 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:53:23.408 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:53:23.408 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 17:53:23.408 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:53:23.418 -07 000000626 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 17:53:23.418 -07 000000626 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 17:53:23.418 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 17:53:23.418 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 17:53:23.418 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 29037 150\n [Camera]
17-03-17 17:53:23.618 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-17 17:53:24.008 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:53:24.008 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:53:24.018 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:53:24.018 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:53:24.018 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 17:53:24.018 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:53:24.018 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:53:24.018 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:53:24.018 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:53:24.018 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2239612688, 0x0, 418435064) start.
17-03-17 17:53:24.208 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29037 775
17-03-17 17:53:24.358 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:53:24.408 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 17:53:24.408 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 17:53:24.408 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:53:24.408 -07 000000626 INF: Camera: sBCa_ReadImage(785074704, 2239612688, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 17:53:24.408 -07 000000626 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 17:53:24.408 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:53:24.408 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:53:24.408 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 17:53:24.408 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:53:24.418 -07 000000626 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 17:53:24.548 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:53:24.548 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:53:24.548 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:53:24.548 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:53:24.548 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1048252464, 0x0, 391868352) start.
17-03-17 17:53:24.548 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:53:24.548 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:53:24.548 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:53:24.548 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:53:24.548 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1083674728, 0x0, 418435064) start.
17-03-17 17:53:24.738 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:53:24.738 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:53:24.738 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 29037 150' command took 2 ms to send, 1302 ms to get response, and 1312 ms overall
17-03-17 17:53:24.738 -07 000000610 INF: Skipping AutoFocus in Tile 6: adopting Best-Z from the cache: -0.132270
17-03-17 17:53:24.738 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13227 mm
17-03-17 17:53:24.738 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:53:24.738 -07 000000482 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 17:53:24.738 -07 000000482 INF: Y Motor: Moving to 64.0626 mm, started at 63.2256 mm, delta = 0.8370 mm
17-03-17 17:53:24.738 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:53:24.748 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 28894, sync = True, waitForSettling = False)
17-03-17 17:53:24.748 -07 000000424 INF: Z Motor: Moving to -0.132268 mm, started at -0.132118 mm, distance = -0.15 um
17-03-17 17:53:24.748 -07 000000424 INF: FPGA: Xmit ZDACW 28894\n [Z Motor]
17-03-17 17:53:24.748 -07 000000626 INF: FPGA: Recv YRDPOS 129486
17-03-17 17:53:24.748 -07 000000482 INF: FPGA: 'YRDPOS' command took 2 ms to send, 2 ms to get response, and 5 ms overall
17-03-17 17:53:24.748 -07 000000482 INF: Y Motor: Encoder = 129486 = motor step 101160.9 = 63.2256 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:53:24.748 -07 000000482 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:53:24.748 -07 000000482 INF: Y Motor: Moving 1339 steps-14
17-03-17 17:53:24.748 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 17:53:24.758 -07 000000424 INF: FPGA: 'ZDACW 28894' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:24.758 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:53:24.758 -07 000000626 INF: FPGA: Recv ZDACR 28894
17-03-17 17:53:24.768 -07 000000482 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:53:24.768 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:24.768 -07 000000424 INF: Z Motor: MoveAbsStepped took 19 ms (did NOT wait for settling yet))
17-03-17 17:53:24.928 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1048252464, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 17:53:24.928 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 17:53:24.928 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:53:24.928 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1083674728, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 17:53:24.928 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 17:53:24.928 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:53:24.928 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:53:24.928 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 17:53:24.938 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:53:24.938 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 17:53:25.138 -07 000000424 INF: FPGA: Recv YMVTILE
17-03-17 17:53:25.138 -07 000000482 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 17:53:25.168 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:53:25.178 -07 000000424 INF: FPGA: Recv YRDPOS 131191
17-03-17 17:53:25.188 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:53:25.188 -07 000000482 INF: Y Motor: Encoder = 131191 = motor step 102493.0 = 64.0581 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:53:25.188 -07 000000482 INF: Y Motor: Position error before settling (table move) = -9 encoder counts (-0.004 mm)
17-03-17 17:53:25.188 -07 000000482 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.837 mm, average velocity = 2.119 mm/sec
17-03-17 17:53:26.138 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:53:26.138 -07 000000459 INF: FPGA: Recv YRDPOS 131191
17-03-17 17:53:26.148 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:53:26.148 -07 000000482 INF: Y Motor: Encoder = 131191 = motor step 102493.0 = 64.0581 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:53:26.158 -07 000000482 INF: Y Motor: After move to 64.062607, error = -0.004501, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:53:26.158 -07 000000482 INF: Y Motor: Position error after settling (table move) = -9 encoder counts (-0.004 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:53:26.158 -07 000000482 INF: Y Motor: Moved to 64.0581 after 1416 ms (table move)
17-03-17 17:53:26.158 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.132268 mm (DAC = 28894)
17-03-17 17:53:26.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:26.158 -07 000000482 INF: FPGA: Recv ZSGSRD 29884
17-03-17 17:53:26.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 17:53:26.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:26.168 -07 000000424 INF: FPGA: Recv ZSGSRD 29868
17-03-17 17:53:26.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:26.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:26.178 -07 000000424 INF: FPGA: Recv ZSGSRD 29877
17-03-17 17:53:26.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:26.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:26.188 -07 000000623 INF: FPGA: Recv ZSGSRD 29881
17-03-17 17:53:26.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:26.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:26.198 -07 000000482 INF: FPGA: Recv ZSGSRD 29883
17-03-17 17:53:26.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:26.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:26.208 -07 000000623 INF: FPGA: Recv ZSGSRD 29892
17-03-17 17:53:26.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:26.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:26.218 -07 000000626 INF: FPGA: Recv ZSGSRD 29884
17-03-17 17:53:26.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:26.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:26.228 -07 000000482 INF: FPGA: Recv ZSGSRD 29881
17-03-17 17:53:26.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:26.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:26.238 -07 000000626 INF: FPGA: Recv ZSGSRD 29878
17-03-17 17:53:26.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:26.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:26.248 -07 000000626 INF: FPGA: Recv ZSGSRD 29867
17-03-17 17:53:26.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:26.258 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:53:26.258 -07 000000623 INF: FPGA: Recv ZPIEZORD 25453
17-03-17 17:53:26.268 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:26.268 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.409 V. Piezo Error = -9.7 V.
17-03-17 17:53:26.268 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.3 um, Read 10 ADC samples: Avg = 29880 (-131.5 uncal um), Error = 0.8 uncal um, Median = 29881 (-131.5 uncal um), StdDev = 8 (0.1 uncal um), Range = 25 (0.2 uncal um), Min = 29867 (-131.4 uncal um), Max = 29892 (-131.6 uncal um), Pos Noise = 12 (0.1 uncal um), Neg Noise = 13 (0.1 uncal um)
17-03-17 17:53:26.268 -07 000000610 INF: Z Motor: ADC noise = 13, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29880, posNoise = 12, negNoise = 13
17-03-17 17:53:26.268 -07 000000610 INF: Z Motor: After move to -0.132268, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:53:26.268 -07 000000610 INF: Z Motor: Settle wait time = 1416 ms, measure time = 104 ms (allowed 150 ms), total time = 1520 ms
17-03-17 17:53:26.268 -07 000000610 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 17:53:26.318 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1575 ms
17-03-17 17:53:26.318 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:53:26.318 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05810546875, Z-position -0.132278810806952. ----------
17-03-17 17:53:26.318 -07 000000610 INF: Cycle	6	Tile	6	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:53:26.318 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28718, sync = True, waitForSettling = True)
17-03-17 17:53:26.318 -07 000000610 INF: Z Motor: Moving to -0.131463 mm, started at -0.132279 mm, distance = 0.82 um
17-03-17 17:53:26.318 -07 000000610 INF: FPGA: Xmit ZDACW 28718\n [Z Motor]
17-03-17 17:53:26.318 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 17:53:26.328 -07 000000610 INF: FPGA: 'ZDACW 28718' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:53:26.328 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:53:26.328 -07 000000623 INF: FPGA: Recv ZDACR 28718
17-03-17 17:53:26.338 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:26.338 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:53:26.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:26.488 -07 000000424 INF: FPGA: Recv ZSGSRD 29753
17-03-17 17:53:26.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:53:26.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:26.498 -07 000000459 INF: FPGA: Recv ZSGSRD 29749
17-03-17 17:53:26.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:26.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:26.508 -07 000000482 INF: FPGA: Recv ZSGSRD 29755
17-03-17 17:53:26.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:26.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:26.518 -07 000000626 INF: FPGA: Recv ZSGSRD 29762
17-03-17 17:53:26.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:26.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:26.528 -07 000000482 INF: FPGA: Recv ZSGSRD 29751
17-03-17 17:53:26.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:26.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:26.538 -07 000000431 INF: FPGA: Recv ZSGSRD 29755
17-03-17 17:53:26.538 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:53:26.538 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 5. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=54, R2=62, Total=116. Warn if over 250 bubbles per interval.
17-03-17 17:53:26.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:26.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:26.548 -07 000000482 INF: FPGA: Recv ZSGSRD 29756
17-03-17 17:53:26.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:26.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:26.558 -07 000000424 INF: FPGA: Recv ZSGSRD 29752
17-03-17 17:53:26.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:26.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:26.568 -07 000000626 INF: FPGA: Recv ZSGSRD 29749
17-03-17 17:53:26.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:26.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:26.578 -07 000000482 INF: FPGA: Recv ZSGSRD 29750
17-03-17 17:53:26.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:26.588 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:53:26.588 -07 000000431 INF: FPGA: Recv ZPIEZORD 25298
17-03-17 17:53:26.598 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:26.598 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.382 V. Piezo Error = -9.8 V.
17-03-17 17:53:26.598 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.5 um, Read 10 ADC samples: Avg = 29753 (-130.7 uncal um), Error = 0.8 uncal um, Median = 29752 (-130.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29749 (-130.7 uncal um), Max = 29762 (-130.7 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:53:26.598 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29753, posNoise = 9, negNoise = 4
17-03-17 17:53:26.598 -07 000000610 INF: Z Motor: After move to -0.131463, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:53:26.598 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 17:53:26.598 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:53:26.598 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:53:26.598 -07 000000626 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:53:26.598 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:53:26.598 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:53:26.598 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:53:26.598 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:53:26.598 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 17:53:26.598 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:53:26.598 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:53:26.598 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:53:26.598 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:53:26.608 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:53:26.608 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:53:26.608 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 17:53:26.608 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:53:26.618 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 17:53:26.618 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 17:53:26.618 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:53:26.618 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:53:26.618 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28894 150\n [Camera]
17-03-17 17:53:26.818 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:53:27.208 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:53:27.208 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:53:27.208 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:53:27.208 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:53:27.208 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1119096992, 0x0, 391868352) start.
17-03-17 17:53:27.208 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:53:27.208 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:53:27.208 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:53:27.208 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:53:27.208 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 17:53:27.398 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28894 775
17-03-17 17:53:27.548 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:53:27.588 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1119096992, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 17:53:27.588 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 17:53:27.588 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:53:27.588 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 17:53:27.588 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 17:53:27.588 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:53:27.588 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:53:27.588 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 17:53:27.598 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:53:27.598 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 17:53:27.738 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:53:27.738 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:53:27.748 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:53:27.748 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:53:27.748 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 17:53:27.748 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:53:27.748 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:53:27.748 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:53:27.748 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:53:27.748 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 17:53:27.928 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:53:27.928 -07 000000623 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:53:27.928 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28894 150' command took 2 ms to send, 1308 ms to get response, and 1312 ms overall
17-03-17 17:53:27.938 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:53:27.938 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05810546875, Z-Position -0.131462935864949. ------
17-03-17 17:53:27.938 -07 000000541 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13793 mm
17-03-17 17:53:27.938 -07 000000541 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:53:27.938 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:53:27.938 -07 000000459 INF: Z Motor: Entering MoveAbsStepped (DAC = 30131, sync = True, waitForSettling = False)
17-03-17 17:53:27.938 -07 000000459 INF: Z Motor: Moving to -0.137931 mm, started at -0.131463 mm, distance = -6.47 um
17-03-17 17:53:27.938 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 17:53:27.938 -07 000000623 INF: Y Motor: Moving to 64.8926 mm, started at 64.0581 mm, delta = 0.8345 mm
17-03-17 17:53:27.938 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:53:27.948 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:53:27.948 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:53:27.948 -07 000000593 INF: FPGA: Recv YRDPOS 131191
17-03-17 17:53:27.958 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 17:53:27.958 -07 000000623 INF: Y Motor: Encoder = 131191 = motor step 102493.0 = 64.0581 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:53:27.958 -07 000000623 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:53:27.958 -07 000000623 INF: Y Motor: Moving 1335 steps-9
17-03-17 17:53:27.958 -07 000000459 INF: FPGA: Xmit ZDACW 30131\n [Z Motor]
17-03-17 17:53:27.958 -07 000000626 INF: FPGA: Recv ZDACW
17-03-17 17:53:27.968 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:53:27.968 -07 000000459 INF: FPGA: 'ZDACW 30131' command took 1 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 17:53:27.978 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:53:27.988 -07 000000459 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:53:27.988 -07 000000448 INF: FPGA: Recv ZDACR 30131
17-03-17 17:53:27.998 -07 000000459 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:53:27.998 -07 000000459 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 17:53:28.098 -07 000000626 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 6, FrontChillerTemperature: 3.941732,
17-03-17 17:53:28.128 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 17:53:28.128 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 17:53:28.128 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:53:28.128 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 17:53:28.128 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 17:53:28.128 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:53:28.138 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:53:28.138 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 17:53:28.138 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:53:28.138 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 17:53:28.168 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:53:28.168 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 17:53:28.348 -07 000000482 INF: FPGA: Recv YMVTILE
17-03-17 17:53:28.348 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 17:53:28.378 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:53:28.388 -07 000000409 INF: FPGA: Recv YRDPOS 132874
17-03-17 17:53:28.388 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 17:53:28.388 -07 000000623 INF: Y Motor: Encoder = 132874 = motor step 103807.8 = 64.8799 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:53:28.388 -07 000000623 INF: Y Motor: Position error before settling (table move) = -26 encoder counts (-0.013 mm)
17-03-17 17:53:28.388 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.835 mm, average velocity = 2.102 mm/sec
17-03-17 17:53:29.338 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:53:29.338 -07 000000593 INF: FPGA: Recv YRDPOS 132874
17-03-17 17:53:29.348 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:53:29.348 -07 000000623 INF: Y Motor: Encoder = 132874 = motor step 103807.8 = 64.8799 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:53:29.368 -07 000000623 INF: Y Motor: After move to 64.892609, error = -0.012726, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:53:29.368 -07 000000623 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:53:29.368 -07 000000623 INF: Y Motor: Moved to 64.8799 after 1423 ms (table move)
17-03-17 17:53:29.368 -07 000000541 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137931 mm (DAC = 30131)
17-03-17 17:53:29.368 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:29.368 -07 000000459 INF: FPGA: Recv ZSGSRD 30760
17-03-17 17:53:29.378 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:53:29.378 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:29.378 -07 000000593 INF: FPGA: Recv ZSGSRD 30756
17-03-17 17:53:29.388 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:29.388 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:29.388 -07 000000448 INF: FPGA: Recv ZSGSRD 30758
17-03-17 17:53:29.398 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:29.398 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:29.398 -07 000000623 INF: FPGA: Recv ZSGSRD 30756
17-03-17 17:53:29.408 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:29.408 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:29.408 -07 000000448 INF: FPGA: Recv ZSGSRD 30762
17-03-17 17:53:29.418 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:29.418 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:29.418 -07 000000459 INF: FPGA: Recv ZSGSRD 30769
17-03-17 17:53:29.428 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:29.428 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:29.428 -07 000000623 INF: FPGA: Recv ZSGSRD 30767
17-03-17 17:53:29.438 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:29.438 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:29.438 -07 000000593 INF: FPGA: Recv ZSGSRD 30767
17-03-17 17:53:29.448 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:53:29.448 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:29.448 -07 000000623 INF: FPGA: Recv ZSGSRD 30758
17-03-17 17:53:29.458 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:29.458 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:29.458 -07 000000486 INF: FPGA: Recv ZSGSRD 30758
17-03-17 17:53:29.468 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:29.468 -07 000000541 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:53:29.468 -07 000000486 INF: FPGA: Recv ZPIEZORD 26609
17-03-17 17:53:29.478 -07 000000541 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:29.478 -07 000000541 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.598 V. Piezo Error = -9.1 V.
17-03-17 17:53:29.478 -07 000000541 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.9 um, Read 10 ADC samples: Avg = 30761 (-137.1 uncal um), Error = 0.8 uncal um, Median = 30759 (-137.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30756 (-137.1 uncal um), Max = 30769 (-137.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:53:29.478 -07 000000541 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30761, posNoise = 8, negNoise = 5
17-03-17 17:53:29.478 -07 000000541 INF: Z Motor: After move to -0.137931, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:53:29.478 -07 000000541 INF: Z Motor: Settle wait time = 1427 ms, measure time = 107 ms (allowed 150 ms), total time = 1534 ms
17-03-17 17:53:29.478 -07 000000541 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 17:53:29.528 -07 000000541 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1586 ms
17-03-17 17:53:29.528 -07 000000541 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:53:29.528 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:53:29.528 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:53:29.528 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:53:29.528 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:53:29.528 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:53:29.528 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:53:29.528 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:53:29.528 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:53:29.538 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:53:29.538 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:53:29.548 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-17 17:53:29.548 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 17:53:29.548 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:53:29.588 -07 000000448 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:53:29.788 -07 000000486 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:53:29.788 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:53:29.788 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:53:29.798 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2369425112, 0x0, 559484976) start.
17-03-17 17:53:29.828 -07 000000486 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:53:29.828 -07 000000541 INF: FPGA: Recv CAMSNAP
17-03-17 17:53:29.828 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 17:53:29.918 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2369425112, 0x0, 559484976) end. Duration was 124 ms.
17-03-17 17:53:29.918 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:53:29.918 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:53:29.918 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-17 17:53:30.028 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:53:30.028 -07 000000593 INF: Autofocus start
17-03-17 17:53:30.028 -07 000000593 INF: MeasureProfile start
17-03-17 17:53:30.028 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:53:30.038 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:53:30.038 -07 000000486 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:53:30.038 -07 000000593 INF: MeasureProfile done
17-03-17 17:53:30.038 -07 000000593 INF: X=112  Z correction [um]=0.5148152
17-03-17 17:53:30.038 -07 000000593 INF: Autofocus finished
17-03-17 17:53:30.238 -07 000000623 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:53:30.238 -07 000000486 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 17:53:30.238 -07 000000610 INF: Suspending Skipping AutoFocus for the next 6 cycles.
17-03-17 17:53:30.238 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.8798828125, Z-position -0.137938541703844. ----------
17-03-17 17:53:30.238 -07 000000610 INF: Cycle	6	Tile	7	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:53:30.248 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28756, sync = True, waitForSettling = True)
17-03-17 17:53:30.248 -07 000000610 INF: Z Motor: Moving to -0.131637 mm, started at -0.137939 mm, distance = 6.30 um
17-03-17 17:53:30.248 -07 000000610 INF: FPGA: Xmit ZDACW 28756\n [Z Motor]
17-03-17 17:53:30.248 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 17:53:30.258 -07 000000610 INF: FPGA: 'ZDACW 28756' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:53:30.258 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:53:30.258 -07 000000541 INF: FPGA: Recv ZDACR 28756
17-03-17 17:53:30.268 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:30.268 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:53:30.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:30.418 -07 000000623 INF: FPGA: Recv ZSGSRD 29786
17-03-17 17:53:30.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:53:30.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:30.428 -07 000000593 INF: FPGA: Recv ZSGSRD 29782
17-03-17 17:53:30.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:30.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:30.438 -07 000000459 INF: FPGA: Recv ZSGSRD 29777
17-03-17 17:53:30.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:30.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:30.448 -07 000000448 INF: FPGA: Recv ZSGSRD 29782
17-03-17 17:53:30.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:30.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:30.458 -07 000000541 INF: FPGA: Recv ZSGSRD 29784
17-03-17 17:53:30.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:30.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:30.468 -07 000000486 INF: FPGA: Recv ZSGSRD 29783
17-03-17 17:53:30.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:30.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:30.478 -07 000000486 INF: FPGA: Recv ZSGSRD 29783
17-03-17 17:53:30.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:30.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:30.488 -07 000000623 INF: FPGA: Recv ZSGSRD 29777
17-03-17 17:53:30.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:30.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:30.498 -07 000000541 INF: FPGA: Recv ZSGSRD 29787
17-03-17 17:53:30.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:30.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:30.508 -07 000000623 INF: FPGA: Recv ZSGSRD 29775
17-03-17 17:53:30.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:30.518 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:53:30.518 -07 000000541 INF: FPGA: Recv ZPIEZORD 25303
17-03-17 17:53:30.528 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:30.528 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.388 V. Piezo Error = -9.8 V.
17-03-17 17:53:30.528 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.6 um, Read 10 ADC samples: Avg = 29782 (-130.9 uncal um), Error = 0.8 uncal um, Median = 29782 (-130.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29775 (-130.8 uncal um), Max = 29787 (-130.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 17:53:30.528 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29782, posNoise = 5, negNoise = 7
17-03-17 17:53:30.528 -07 000000610 INF: Z Motor: After move to -0.131637, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:53:30.528 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 17:53:30.528 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:53:30.528 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:53:30.528 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:53:30.528 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:53:30.528 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:53:30.528 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:53:30.528 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:53:30.528 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:53:30.528 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:53:30.528 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:53:30.528 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:53:30.528 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:53:30.528 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:53:30.528 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:53:30.538 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:53:30.538 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:53:30.548 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 17:53:30.548 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 17:53:30.548 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 17:53:30.548 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 17:53:30.548 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28933 150\n [Camera]
17-03-17 17:53:30.748 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:53:31.148 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 586
17-03-17 17:53:31.148 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 586
17-03-17 17:53:31.148 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:53:31.148 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:53:31.148 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 17:53:31.148 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 586
17-03-17 17:53:31.148 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 586
17-03-17 17:53:31.148 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:53:31.148 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:53:31.148 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 17:53:31.338 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28933 775
17-03-17 17:53:31.488 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:53:31.528 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 17:53:31.528 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 17:53:31.528 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:53:31.528 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 17:53:31.528 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 17:53:31.528 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:53:31.528 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:53:31.528 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 17:53:31.528 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:53:31.538 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 17:53:31.538 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:53:31.538 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 5. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=54, R2=62, Total=116. Warn if over 250 bubbles per interval.
17-03-17 17:53:31.668 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:53:31.668 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:53:31.678 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:53:31.678 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:53:31.678 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-17 17:53:31.678 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:53:31.678 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:53:31.678 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:53:31.678 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:53:31.678 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 17:53:31.868 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:53:31.868 -07 000000459 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:53:31.868 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28933 150' command took 2 ms to send, 1301 ms to get response, and 1312 ms overall
17-03-17 17:53:31.868 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:53:31.868 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.8798828125, Z-Position -0.13164923801706. ------
17-03-17 17:53:31.868 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:53:31.868 -07 000000623 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13833 mm
17-03-17 17:53:31.868 -07 000000623 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:53:31.878 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:53:31.878 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 17:53:31.878 -07 000000433 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:53:31.878 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 17:53:31.878 -07 000000459 INF: Y Motor: Moving to 65.7226 mm, started at 64.8799 mm, delta = 0.8427 mm
17-03-17 17:53:31.878 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 30217, sync = True, waitForSettling = False)
17-03-17 17:53:31.878 -07 000000486 INF: Z Motor: Moving to -0.138325 mm, started at -0.131649 mm, distance = -6.68 um
17-03-17 17:53:31.888 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:53:31.888 -07 000000576 INF: FPGA: Recv YRDPOS 132875
17-03-17 17:53:31.898 -07 000000486 INF: FPGA: Xmit ZDACW 30217\n [Z Motor]
17-03-17 17:53:31.898 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 17:53:31.898 -07 000000459 INF: Y Motor: Encoder = 132875 = motor step 103808.6 = 64.8804 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:53:31.898 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 17:53:31.898 -07 000000459 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:53:31.898 -07 000000459 INF: Y Motor: Moving 1348 steps-26
17-03-17 17:53:31.908 -07 000000486 INF: FPGA: 'ZDACW 30217' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 17:53:31.908 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:53:31.908 -07 000000431 INF: FPGA: Recv ZDACR 30217
17-03-17 17:53:31.918 -07 000000459 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:53:31.918 -07 000000486 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:31.918 -07 000000486 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet))
17-03-17 17:53:32.058 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 17:53:32.058 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 17:53:32.058 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:53:32.058 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 17:53:32.058 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 17:53:32.058 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:53:32.068 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 17:53:32.068 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 17:53:32.068 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 17:53:32.068 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 17:53:32.078 -07 000000486 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:53:32.078 -07 000000433 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 17:53:32.288 -07 000000431 INF: FPGA: Recv YMVTILE
17-03-17 17:53:32.288 -07 000000459 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-17 17:53:32.328 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:53:32.328 -07 000000424 INF: FPGA: Recv YRDPOS 134585
17-03-17 17:53:32.338 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:32.338 -07 000000459 INF: Y Motor: Encoder = 134585 = motor step 105144.5 = 65.7153 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:53:32.338 -07 000000459 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 17:53:32.338 -07 000000459 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.843 mm, average velocity = 2.144 mm/sec
17-03-17 17:53:33.288 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:53:33.288 -07 000000576 INF: FPGA: Recv YRDPOS 134585
17-03-17 17:53:33.298 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:53:33.298 -07 000000459 INF: Y Motor: Encoder = 134585 = motor step 105144.5 = 65.7153 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:53:33.308 -07 000000459 INF: Y Motor: After move to 65.722610, error = -0.007278, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:53:33.308 -07 000000459 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:53:33.308 -07 000000459 INF: Y Motor: Moved to 65.7153 after 1437 ms (table move)
17-03-17 17:53:33.318 -07 000000623 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138325 mm (DAC = 30217)
17-03-17 17:53:33.318 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:33.318 -07 000000459 INF: FPGA: Recv ZSGSRD 30831
17-03-17 17:53:33.328 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:53:33.328 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:33.328 -07 000000459 INF: FPGA: Recv ZSGSRD 30817
17-03-17 17:53:33.338 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:33.338 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:33.338 -07 000000433 INF: FPGA: Recv ZSGSRD 30818
17-03-17 17:53:33.348 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:33.348 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:33.348 -07 000000593 INF: FPGA: Recv ZSGSRD 30824
17-03-17 17:53:33.358 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:33.358 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:33.358 -07 000000486 INF: FPGA: Recv ZSGSRD 30820
17-03-17 17:53:33.368 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:33.368 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:33.368 -07 000000433 INF: FPGA: Recv ZSGSRD 30824
17-03-17 17:53:33.378 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:33.378 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:33.378 -07 000000459 INF: FPGA: Recv ZSGSRD 30826
17-03-17 17:53:33.388 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:33.388 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:33.388 -07 000000593 INF: FPGA: Recv ZSGSRD 30818
17-03-17 17:53:33.398 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:33.398 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:33.398 -07 000000486 INF: FPGA: Recv ZSGSRD 30825
17-03-17 17:53:33.408 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:53:33.408 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:33.408 -07 000000593 INF: FPGA: Recv ZSGSRD 30820
17-03-17 17:53:33.418 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:33.418 -07 000000623 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:53:33.418 -07 000000424 INF: FPGA: Recv ZPIEZORD 26683
17-03-17 17:53:33.428 -07 000000623 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:33.428 -07 000000623 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.611 V. Piezo Error = -9.1 V.
17-03-17 17:53:33.428 -07 000000623 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.3 um, Read 10 ADC samples: Avg = 30822 (-137.5 uncal um), Error = 0.8 uncal um, Median = 30822 (-137.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30817 (-137.5 uncal um), Max = 30831 (-137.6 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:53:33.428 -07 000000623 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30822, posNoise = 9, negNoise = 5
17-03-17 17:53:33.428 -07 000000623 INF: Z Motor: After move to -0.138325, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:53:33.428 -07 000000623 INF: Z Motor: Settle wait time = 1440 ms, measure time = 108 ms (allowed 150 ms), total time = 1548 ms
17-03-17 17:53:33.428 -07 000000623 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 17:53:33.468 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 6, FrontChillerTemperature: 3.960826,
17-03-17 17:53:33.478 -07 000000623 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1601 ms
17-03-17 17:53:33.478 -07 000000623 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:53:33.478 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:53:33.478 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:53:33.478 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:53:33.478 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:53:33.478 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:53:33.478 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:53:33.478 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:53:33.478 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:53:33.488 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 17:53:33.488 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:53:33.498 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-17 17:53:33.498 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 17:53:33.518 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:53:33.558 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:53:33.758 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:53:33.758 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:53:33.758 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:53:33.758 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 614746384, 0x0, 559484976) start.
17-03-17 17:53:33.798 -07 000000551 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:53:33.798 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 17:53:33.798 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 299 ms overall
17-03-17 17:53:33.878 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 614746384, 0x0, 559484976) end. Duration was 121 ms.
17-03-17 17:53:33.878 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:53:33.878 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:53:33.878 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-17 17:53:33.898 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:53:33.898 -07 000000478 INF: Autofocus start
17-03-17 17:53:33.898 -07 000000478 INF: MeasureProfile start
17-03-17 17:53:33.898 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:53:33.908 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:53:33.908 -07 000000431 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:53:33.908 -07 000000478 INF: MeasureProfile done
17-03-17 17:53:33.908 -07 000000478 INF: X=-32  Z correction [um]=-0.1591732
17-03-17 17:53:33.908 -07 000000478 INF: Autofocus finished
17-03-17 17:53:34.108 -07 000000433 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:53:34.108 -07 000000431 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:53:34.108 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71533203125, Z-position -0.138330418644491. ----------
17-03-17 17:53:34.108 -07 000000610 INF: Cycle	6	Tile	8	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:53:34.108 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28695, sync = True, waitForSettling = True)
17-03-17 17:53:34.118 -07 000000610 INF: Z Motor: Moving to -0.131357 mm, started at -0.138330 mm, distance = 6.97 um
17-03-17 17:53:34.118 -07 000000610 INF: FPGA: Xmit ZDACW 28695\n [Z Motor]
17-03-17 17:53:34.118 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 17:53:34.128 -07 000000610 INF: FPGA: 'ZDACW 28695' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:34.128 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:53:34.128 -07 000000429 INF: FPGA: Recv ZDACR 28695
17-03-17 17:53:34.138 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:34.138 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:53:34.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:34.288 -07 000000486 INF: FPGA: Recv ZSGSRD 29736
17-03-17 17:53:34.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:34.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:34.298 -07 000000424 INF: FPGA: Recv ZSGSRD 29738
17-03-17 17:53:34.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:34.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:34.308 -07 000000429 INF: FPGA: Recv ZSGSRD 29739
17-03-17 17:53:34.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:34.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:34.318 -07 000000424 INF: FPGA: Recv ZSGSRD 29736
17-03-17 17:53:34.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:34.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:34.328 -07 000000429 INF: FPGA: Recv ZSGSRD 29735
17-03-17 17:53:34.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:34.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:34.338 -07 000000433 INF: FPGA: Recv ZSGSRD 29740
17-03-17 17:53:34.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:34.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:34.348 -07 000000429 INF: FPGA: Recv ZSGSRD 29740
17-03-17 17:53:34.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:34.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:34.358 -07 000000448 INF: FPGA: Recv ZSGSRD 29743
17-03-17 17:53:34.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:34.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:34.368 -07 000000429 INF: FPGA: Recv ZSGSRD 29732
17-03-17 17:53:34.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:34.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:34.378 -07 000000486 INF: FPGA: Recv ZSGSRD 29736
17-03-17 17:53:34.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:34.388 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:53:34.388 -07 000000433 INF: FPGA: Recv ZPIEZORD 25269
17-03-17 17:53:34.398 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:34.398 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.379 V. Piezo Error = -9.8 V.
17-03-17 17:53:34.398 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.4 um, Read 10 ADC samples: Avg = 29738 (-130.6 uncal um), Error = 0.8 uncal um, Median = 29737 (-130.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29732 (-130.5 uncal um), Max = 29743 (-130.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:53:34.398 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29738, posNoise = 5, negNoise = 6
17-03-17 17:53:34.398 -07 000000610 INF: Z Motor: After move to -0.131357, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:53:34.398 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 17:53:34.398 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:53:34.398 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:53:34.398 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:53:34.398 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:53:34.398 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:53:34.398 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:53:34.398 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:53:34.398 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:53:34.398 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:53:34.398 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:53:34.398 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 3 ms.
17-03-17 17:53:34.398 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:53:34.408 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:53:34.408 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:53:34.408 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:53:34.408 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:53:34.408 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:53:34.418 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 17:53:34.418 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 17:53:34.418 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 17:53:34.418 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28872 150\n [Camera]
17-03-17 17:53:34.618 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:53:35.008 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:53:35.008 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:53:35.008 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:53:35.008 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:53:35.008 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-17 17:53:35.008 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:53:35.008 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:53:35.008 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:53:35.008 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:53:35.008 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-17 17:53:35.198 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28872 775
17-03-17 17:53:35.348 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:53:35.388 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 17:53:35.388 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 17:53:35.388 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:53:35.388 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 17:53:35.388 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:53:35.388 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 17:53:35.388 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:53:35.388 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:53:35.388 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 17:53:35.398 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 17:53:35.538 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:53:35.538 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:53:35.538 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:53:35.538 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:53:35.538 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-17 17:53:35.548 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:53:35.548 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:53:35.548 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:53:35.548 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:53:35.548 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) start.
17-03-17 17:53:35.728 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:53:35.728 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:53:35.728 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28872 150' command took 2 ms to send, 1308 ms to get response, and 1314 ms overall
17-03-17 17:53:35.738 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:53:35.738 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71533203125, Z-Position -0.131366572682822. ------
17-03-17 17:53:35.738 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:53:35.738 -07 000000431 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13763 mm
17-03-17 17:53:35.738 -07 000000431 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:53:35.738 -07 000000478 INF: Z Motor: Entering MoveAbsStepped (DAC = 30066, sync = True, waitForSettling = False)
17-03-17 17:53:35.738 -07 000000478 INF: Z Motor: Moving to -0.137633 mm, started at -0.131367 mm, distance = -6.27 um
17-03-17 17:53:35.738 -07 000000448 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 17:53:35.738 -07 000000448 INF: Y Motor: Moving to 66.5526 mm, started at 65.7153 mm, delta = 0.8373 mm
17-03-17 17:53:35.748 -07 000000478 INF: FPGA: Xmit ZDACW 30066\n [Z Motor]
17-03-17 17:53:35.748 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:53:35.748 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 6 ms overall
17-03-17 17:53:35.748 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 17:53:35.758 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:53:35.758 -07 000000478 INF: FPGA: 'ZDACW 30066' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 17:53:35.758 -07 000000462 INF: FPGA: Recv YRDPOS 134586
17-03-17 17:53:35.768 -07 000000429 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:53:35.768 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 17:53:35.768 -07 000000448 INF: Y Motor: Encoder = 134586 = motor step 105145.3 = 65.7158 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:53:35.768 -07 000000448 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:53:35.768 -07 000000448 INF: Y Motor: Moving 1339 steps-15
17-03-17 17:53:35.778 -07 000000478 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:53:35.778 -07 000000409 INF: FPGA: Recv ZDACR 30066
17-03-17 17:53:35.788 -07 000000448 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:53:35.788 -07 000000478 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:53:35.788 -07 000000478 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-17 17:53:35.938 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 17:53:35.938 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 17:53:35.938 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:53:35.938 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 17:53:35.938 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 17:53:35.938 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:53:35.938 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 17:53:35.938 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 17:53:35.948 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:53:35.948 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 17:53:35.968 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:53:35.968 -07 000000429 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-17 17:53:36.158 -07 000000626 INF: FPGA: Recv YMVTILE
17-03-17 17:53:36.158 -07 000000448 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-17 17:53:36.198 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:53:36.198 -07 000000482 INF: FPGA: Recv YRDPOS 136274
17-03-17 17:53:36.208 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:53:36.208 -07 000000448 INF: Y Motor: Encoder = 136274 = motor step 106464.1 = 66.5400 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:53:36.208 -07 000000448 INF: Y Motor: Position error before settling (table move) = -26 encoder counts (-0.013 mm)
17-03-17 17:53:36.208 -07 000000448 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.837 mm, average velocity = 2.141 mm/sec
17-03-17 17:53:36.538 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:53:36.538 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 5. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=54, R2=62, Total=116. Warn if over 250 bubbles per interval.
17-03-17 17:53:37.158 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:53:37.158 -07 000000462 INF: FPGA: Recv YRDPOS 136275
17-03-17 17:53:37.168 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:53:37.168 -07 000000448 INF: Y Motor: Encoder = 136275 = motor step 106464.8 = 66.5405 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:53:37.178 -07 000000448 INF: Y Motor: After move to 66.552605, error = -0.012077, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:53:37.178 -07 000000448 INF: Y Motor: Position error after settling (table move) = -25 encoder counts (-0.012 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 17:53:37.178 -07 000000448 INF: Y Motor: Moved to 66.5405 after 1441 ms (table move)
17-03-17 17:53:37.188 -07 000000431 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137633 mm (DAC = 30066)
17-03-17 17:53:37.188 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:37.188 -07 000000424 INF: FPGA: Recv ZSGSRD 30722
17-03-17 17:53:37.198 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:53:37.198 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:37.198 -07 000000547 INF: FPGA: Recv ZSGSRD 30709
17-03-17 17:53:37.208 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:37.208 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:37.208 -07 000000478 INF: FPGA: Recv ZSGSRD 30715
17-03-17 17:53:37.218 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:37.218 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:37.218 -07 000000627 INF: FPGA: Recv ZSGSRD 30720
17-03-17 17:53:37.228 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:37.228 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:37.228 -07 000000623 INF: FPGA: Recv ZSGSRD 30716
17-03-17 17:53:37.238 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:37.238 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:37.238 -07 000000627 INF: FPGA: Recv ZSGSRD 30717
17-03-17 17:53:37.248 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:37.248 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:37.248 -07 000000623 INF: FPGA: Recv ZSGSRD 30716
17-03-17 17:53:37.258 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:37.258 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:37.258 -07 000000482 INF: FPGA: Recv ZSGSRD 30718
17-03-17 17:53:37.268 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:37.268 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:37.268 -07 000000626 INF: FPGA: Recv ZSGSRD 30710
17-03-17 17:53:37.278 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:37.278 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:37.278 -07 000000409 INF: FPGA: Recv ZSGSRD 30710
17-03-17 17:53:37.288 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:37.288 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:53:37.288 -07 000000448 INF: FPGA: Recv ZPIEZORD 26554
17-03-17 17:53:37.298 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:37.298 -07 000000431 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.588 V. Piezo Error = -9.2 V.
17-03-17 17:53:37.298 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.6 um, Read 10 ADC samples: Avg = 30715 (-136.8 uncal um), Error = 0.8 uncal um, Median = 30716 (-136.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30709 (-136.8 uncal um), Max = 30722 (-136.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 17:53:37.298 -07 000000431 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30715, posNoise = 7, negNoise = 6
17-03-17 17:53:37.298 -07 000000431 INF: Z Motor: After move to -0.137633, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:53:37.298 -07 000000431 INF: Z Motor: Settle wait time = 1445 ms, measure time = 108 ms (allowed 150 ms), total time = 1553 ms
17-03-17 17:53:37.298 -07 000000431 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 17:53:37.348 -07 000000431 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-17 17:53:37.348 -07 000000431 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:53:37.348 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:53:37.348 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:53:37.348 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:53:37.348 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:53:37.348 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:53:37.358 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:53:37.358 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:53:37.358 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:53:37.358 -07 000000424 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:53:37.358 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:53:37.368 -07 000000424 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 17:53:37.368 -07 000000424 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 17:53:37.368 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:53:37.408 -07 000000482 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:53:37.608 -07 000000478 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:53:37.608 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:53:37.608 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:53:37.608 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2403175240, 0x0, 559484976) start.
17-03-17 17:53:37.648 -07 000000486 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:53:37.648 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 17:53:37.648 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 17:53:37.728 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2403175240, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 17:53:37.728 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:53:37.728 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 17:53:37.728 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-17 17:53:37.748 -07 000000424 INF: Autofocus start
17-03-17 17:53:37.748 -07 000000424 INF: MeasureProfile start
17-03-17 17:53:37.748 -07 000000409 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:53:37.748 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:53:37.758 -07 000000409 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:53:37.758 -07 000000409 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:53:37.768 -07 000000424 INF: MeasureProfile done
17-03-17 17:53:37.768 -07 000000424 INF: X=32  Z correction [um]=0.1299841
17-03-17 17:53:37.768 -07 000000424 INF: Autofocus finished
17-03-17 17:53:37.958 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:53:37.958 -07 000000409 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:53:37.958 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.54052734375, Z-position -0.137643027945323. ----------
17-03-17 17:53:37.958 -07 000000610 INF: Cycle	6	Tile	9	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:53:37.968 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28607, sync = True, waitForSettling = True)
17-03-17 17:53:37.968 -07 000000610 INF: Z Motor: Moving to -0.130954 mm, started at -0.137643 mm, distance = 6.69 um
17-03-17 17:53:37.968 -07 000000610 INF: FPGA: Xmit ZDACW 28607\n [Z Motor]
17-03-17 17:53:37.968 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 17:53:37.978 -07 000000610 INF: FPGA: 'ZDACW 28607' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:53:37.978 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:53:37.978 -07 000000478 INF: FPGA: Recv ZDACR 28607
17-03-17 17:53:37.988 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:37.988 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:53:38.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:38.138 -07 000000433 INF: FPGA: Recv ZSGSRD 29676
17-03-17 17:53:38.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:53:38.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:38.148 -07 000000623 INF: FPGA: Recv ZSGSRD 29677
17-03-17 17:53:38.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:38.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:38.158 -07 000000627 INF: FPGA: Recv ZSGSRD 29678
17-03-17 17:53:38.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:38.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:38.168 -07 000000448 INF: FPGA: Recv ZSGSRD 29672
17-03-17 17:53:38.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:38.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:38.178 -07 000000482 INF: FPGA: Recv ZSGSRD 29675
17-03-17 17:53:38.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:38.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:38.188 -07 000000431 INF: FPGA: Recv ZSGSRD 29681
17-03-17 17:53:38.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:38.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:38.198 -07 000000409 INF: FPGA: Recv ZSGSRD 29675
17-03-17 17:53:38.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:38.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:38.208 -07 000000448 INF: FPGA: Recv ZSGSRD 29679
17-03-17 17:53:38.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:38.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:38.218 -07 000000433 INF: FPGA: Recv ZSGSRD 29671
17-03-17 17:53:38.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:38.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:38.228 -07 000000424 INF: FPGA: Recv ZSGSRD 29679
17-03-17 17:53:38.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:38.238 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:53:38.238 -07 000000431 INF: FPGA: Recv ZPIEZORD 25223
17-03-17 17:53:38.248 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:38.248 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.365 V. Piezo Error = -9.8 V.
17-03-17 17:53:38.248 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.0 um, Read 10 ADC samples: Avg = 29676 (-130.2 uncal um), Error = 0.8 uncal um, Median = 29676 (-130.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29671 (-130.2 uncal um), Max = 29681 (-130.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:53:38.248 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29676, posNoise = 5, negNoise = 5
17-03-17 17:53:38.248 -07 000000610 INF: Z Motor: After move to -0.130954, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:53:38.248 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 17:53:38.248 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:53:38.248 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:53:38.248 -07 000000424 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:53:38.248 -07 000000409 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:53:38.248 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:53:38.248 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:53:38.248 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:53:38.248 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:53:38.248 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:53:38.248 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:53:38.248 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:53:38.248 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:53:38.258 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:53:38.258 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:53:38.258 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:53:38.258 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:53:38.268 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:53:38.268 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:53:38.268 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 17:53:38.268 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:53:38.268 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28783 150\n [Camera]
17-03-17 17:53:38.468 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:53:38.838 -07 000000424 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 6, FrontChillerTemperature: 3.934904,
17-03-17 17:53:38.858 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:53:38.858 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:53:38.858 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:53:38.858 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:53:38.858 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) start.
17-03-17 17:53:38.858 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:53:38.858 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:53:38.858 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:53:38.858 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:53:38.858 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2818576432, 0x0, 418435064) start.
17-03-17 17:53:39.048 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28783 775
17-03-17 17:53:39.198 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:53:39.238 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2818576432, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 17:53:39.238 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 17:53:39.238 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:53:39.238 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 17:53:39.238 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 17:53:39.238 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:53:39.238 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:53:39.238 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:53:39.238 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 17:53:39.248 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 17:53:39.388 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:53:39.388 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:53:39.388 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:53:39.388 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:53:39.388 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2853998696, 0x0, 391868352) start.
17-03-17 17:53:39.388 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:53:39.388 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:53:39.388 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:53:39.388 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:53:39.388 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2889420960, 0x0, 418435064) start.
17-03-17 17:53:39.578 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:53:39.578 -07 000000409 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:53:39.578 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28783 150' command took 2 ms to send, 1305 ms to get response, and 1312 ms overall
17-03-17 17:53:39.578 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:53:39.578 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.54052734375, Z-Position -0.130968271530033. ------
17-03-17 17:53:39.588 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:53:39.588 -07 000000482 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13777 mm
17-03-17 17:53:39.588 -07 000000482 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:53:39.718 -07 000000424 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:53:39.718 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 135 ms overall
17-03-17 17:53:39.718 -07 000000448 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:53:39.718 -07 000000409 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 17:53:39.718 -07 000000409 INF: Y Motor: Moving to 67.3826 mm, started at 66.5405 mm, delta = 0.8421 mm
17-03-17 17:53:39.718 -07 000000429 INF: Z Motor: Entering MoveAbsStepped (DAC = 30097, sync = True, waitForSettling = False)
17-03-17 17:53:39.718 -07 000000429 INF: Z Motor: Moving to -0.137775 mm, started at -0.130968 mm, distance = -6.81 um
17-03-17 17:53:39.728 -07 000000429 INF: FPGA: Xmit ZDACW 30097\n [Z Motor]
17-03-17 17:53:39.728 -07 000000431 INF: FPGA: Recv ZDACW
17-03-17 17:53:39.738 -07 000000429 INF: FPGA: 'ZDACW 30097' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 17:53:39.738 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:53:39.738 -07 000000424 INF: FPGA: Recv YRDPOS 136275
17-03-17 17:53:39.748 -07 000000429 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:53:39.748 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 17:53:39.748 -07 000000409 INF: Y Motor: Encoder = 136275 = motor step 106464.8 = 66.5405 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:53:39.748 -07 000000409 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:53:39.748 -07 000000409 INF: Y Motor: Moving 1347 steps-26
17-03-17 17:53:39.748 -07 000000424 INF: FPGA: Recv ZDACR 30097
17-03-17 17:53:39.758 -07 000000429 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:53:39.758 -07 000000429 INF: Z Motor: MoveAbsStepped took 31 ms (did NOT wait for settling yet))
17-03-17 17:53:39.758 -07 000000409 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:53:39.798 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2853998696, 0x0, 391868352) end. Duration was 409 ms.
17-03-17 17:53:39.798 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 17:53:39.798 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:53:39.798 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2889420960, 0x0, 418435064) end. Duration was 410 ms.
17-03-17 17:53:39.798 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 17:53:39.798 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:53:39.808 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:53:39.808 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 17:53:39.808 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 418 ms.
17-03-17 17:53:39.808 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 421 ms.
17-03-17 17:53:39.928 -07 000000431 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:53:39.928 -07 000000448 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 202 ms to get response, and 205 ms overall
17-03-17 17:53:40.128 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 17:53:40.128 -07 000000409 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 388 ms overall
17-03-17 17:53:40.158 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:53:40.168 -07 000000431 INF: FPGA: Recv YRDPOS 137980
17-03-17 17:53:40.178 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:53:40.178 -07 000000409 INF: Y Motor: Encoder = 137980 = motor step 107796.9 = 67.3730 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:53:40.178 -07 000000409 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 17:53:40.178 -07 000000409 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.842 mm, average velocity = 2.170 mm/sec
17-03-17 17:53:41.128 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:53:41.128 -07 000000448 INF: FPGA: Recv YRDPOS 137981
17-03-17 17:53:41.138 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:41.138 -07 000000409 INF: Y Motor: Encoder = 137981 = motor step 107797.7 = 67.3735 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:53:41.158 -07 000000409 INF: Y Motor: After move to 67.382607, error = -0.009071, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:53:41.158 -07 000000409 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 17:53:41.158 -07 000000409 INF: Y Motor: Moved to 67.3735 after 1432 ms (table move)
17-03-17 17:53:41.158 -07 000000482 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137775 mm (DAC = 30097)
17-03-17 17:53:41.158 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:41.158 -07 000000478 INF: FPGA: Recv ZSGSRD 30738
17-03-17 17:53:41.168 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:53:41.168 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:41.168 -07 000000424 INF: FPGA: Recv ZSGSRD 30734
17-03-17 17:53:41.178 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:41.178 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:41.178 -07 000000478 INF: FPGA: Recv ZSGSRD 30737
17-03-17 17:53:41.188 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:41.188 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:41.188 -07 000000424 INF: FPGA: Recv ZSGSRD 30732
17-03-17 17:53:41.198 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:41.198 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:41.198 -07 000000409 INF: FPGA: Recv ZSGSRD 30740
17-03-17 17:53:41.208 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:41.208 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:41.208 -07 000000431 INF: FPGA: Recv ZSGSRD 30745
17-03-17 17:53:41.218 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:41.218 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:41.218 -07 000000429 INF: FPGA: Recv ZSGSRD 30737
17-03-17 17:53:41.228 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:41.228 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:41.228 -07 000000478 INF: FPGA: Recv ZSGSRD 30738
17-03-17 17:53:41.238 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:41.238 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:41.238 -07 000000448 INF: FPGA: Recv ZSGSRD 30735
17-03-17 17:53:41.248 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:41.248 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:41.248 -07 000000424 INF: FPGA: Recv ZSGSRD 30737
17-03-17 17:53:41.258 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:41.268 -07 000000482 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:53:41.278 -07 000000409 INF: FPGA: Recv ZPIEZORD 26612
17-03-17 17:53:41.288 -07 000000482 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:53:41.288 -07 000000482 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.593 V. Piezo Error = -9.1 V.
17-03-17 17:53:41.288 -07 000000482 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.8 um, Read 10 ADC samples: Avg = 30737 (-137.0 uncal um), Error = 0.8 uncal um, Median = 30737 (-137.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30732 (-137.0 uncal um), Max = 30745 (-137.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:53:41.288 -07 000000482 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30737, posNoise = 8, negNoise = 5
17-03-17 17:53:41.288 -07 000000482 INF: Z Motor: After move to -0.137775, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:53:41.288 -07 000000482 INF: Z Motor: Settle wait time = 1436 ms, measure time = 125 ms (allowed 150 ms), total time = 1561 ms
17-03-17 17:53:41.288 -07 000000482 INF: Z Motor: Waiting extra 25 ms after reading position to reach expected total of 150 ms
17-03-17 17:53:41.318 -07 000000482 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1729 ms
17-03-17 17:53:41.318 -07 000000482 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:53:41.318 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:53:41.318 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:53:41.318 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:53:41.318 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:53:41.318 -07 000000409 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:53:41.318 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:53:41.318 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:53:41.318 -07 000000409 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:53:41.328 -07 000000409 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 17:53:41.328 -07 000000409 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:53:41.338 -07 000000409 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 17:53:41.338 -07 000000409 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 17:53:41.338 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:53:41.388 -07 000000448 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:53:41.538 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:53:41.538 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 5. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=54, R2=62, Total=116. Warn if over 250 bubbles per interval.
17-03-17 17:53:41.578 -07 000000431 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:53:41.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:53:41.588 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:53:41.588 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 17:53:41.618 -07 000000482 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:53:41.628 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 17:53:41.628 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 287 ms overall
17-03-17 17:53:41.708 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 17:53:41.708 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:53:41.708 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:53:41.708 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 17:53:41.728 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:53:41.728 -07 000000547 INF: Autofocus start
17-03-17 17:53:41.728 -07 000000547 INF: MeasureProfile start
17-03-17 17:53:41.738 -07 000000409 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:53:41.738 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 17:53:41.738 -07 000000429 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:53:41.738 -07 000000547 INF: MeasureProfile done
17-03-17 17:53:41.748 -07 000000547 INF: X=0  Z correction [um]=-0.02394831
17-03-17 17:53:41.748 -07 000000547 INF: Autofocus finished
17-03-17 17:53:41.938 -07 000000482 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:53:41.938 -07 000000429 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:53:41.938 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37353515625, Z-position -0.137784360612442. ----------
17-03-17 17:53:41.948 -07 000000610 INF: Cycle	6	Tile	10	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:53:41.948 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28604, sync = True, waitForSettling = True)
17-03-17 17:53:41.948 -07 000000610 INF: Z Motor: Moving to -0.130941 mm, started at -0.137784 mm, distance = 6.84 um
17-03-17 17:53:41.948 -07 000000610 INF: FPGA: Xmit ZDACW 28604\n [Z Motor]
17-03-17 17:53:41.948 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 17:53:41.958 -07 000000610 INF: FPGA: 'ZDACW 28604' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:53:41.958 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:53:41.958 -07 000000478 INF: FPGA: Recv ZDACR 28604
17-03-17 17:53:41.968 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:41.968 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:53:42.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:42.118 -07 000000431 INF: FPGA: Recv ZSGSRD 29677
17-03-17 17:53:42.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:53:42.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:42.128 -07 000000482 INF: FPGA: Recv ZSGSRD 29676
17-03-17 17:53:42.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:42.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:42.138 -07 000000409 INF: FPGA: Recv ZSGSRD 29673
17-03-17 17:53:42.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:42.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:42.148 -07 000000431 INF: FPGA: Recv ZSGSRD 29677
17-03-17 17:53:42.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:42.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:42.158 -07 000000424 INF: FPGA: Recv ZSGSRD 29678
17-03-17 17:53:42.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:42.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:42.168 -07 000000431 INF: FPGA: Recv ZSGSRD 29665
17-03-17 17:53:42.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:42.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:42.178 -07 000000547 INF: FPGA: Recv ZSGSRD 29675
17-03-17 17:53:42.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:42.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:42.188 -07 000000448 INF: FPGA: Recv ZSGSRD 29674
17-03-17 17:53:42.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:42.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:42.198 -07 000000478 INF: FPGA: Recv ZSGSRD 29674
17-03-17 17:53:42.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:42.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:42.208 -07 000000482 INF: FPGA: Recv ZSGSRD 29672
17-03-17 17:53:42.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:42.218 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:53:42.218 -07 000000478 INF: FPGA: Recv ZPIEZORD 25227
17-03-17 17:53:42.228 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:42.228 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.365 V. Piezo Error = -9.8 V.
17-03-17 17:53:42.228 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.9 um, Read 10 ADC samples: Avg = 29674 (-130.2 uncal um), Error = 0.8 uncal um, Median = 29674 (-130.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29665 (-130.1 uncal um), Max = 29678 (-130.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 17:53:42.228 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29674, posNoise = 4, negNoise = 9
17-03-17 17:53:42.228 -07 000000610 INF: Z Motor: After move to -0.130941, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:53:42.228 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 17:53:42.228 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:53:42.228 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:53:42.228 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:53:42.228 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:53:42.228 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:53:42.228 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:53:42.228 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:53:42.228 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:53:42.238 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:53:42.238 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:53:42.238 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:53:42.238 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:53:42.238 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:53:42.238 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:53:42.238 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 17:53:42.238 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:53:42.248 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:53:42.248 -07 000000424 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:53:42.248 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 17:53:42.248 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:53:42.248 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28781 150\n [Camera]
17-03-17 17:53:42.448 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:53:42.838 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:53:42.838 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:53:42.838 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:53:42.838 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:53:42.838 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:53:42.838 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:53:42.848 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:53:42.848 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 17:53:42.848 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:53:42.848 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 17:53:43.028 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28781 775
17-03-17 17:53:43.178 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:53:43.218 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 368 ms.
17-03-17 17:53:43.218 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 368 ms.
17-03-17 17:53:43.218 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:53:43.218 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 17:53:43.218 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 17:53:43.218 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:53:43.218 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:53:43.218 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:53:43.228 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 17:53:43.228 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 17:53:43.368 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:53:43.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:53:43.368 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:53:43.368 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:53:43.368 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:53:43.378 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:53:43.488 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:53:43.488 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 17:53:43.498 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:53:43.498 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 589594896, 0x0, 418435064) start.
17-03-17 17:53:43.558 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:53:43.558 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:53:43.558 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28781 150' command took 2 ms to send, 1308 ms to get response, and 1312 ms overall
17-03-17 17:53:43.568 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:53:43.568 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37353515625, Z-Position -0.13095542310575. ------
17-03-17 17:53:43.568 -07 000000409 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13732 mm
17-03-17 17:53:43.568 -07 000000409 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:53:43.568 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:53:43.568 -07 000000482 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 17:53:43.568 -07 000000482 INF: Y Motor: Moving to 68.2126 mm, started at 67.3735 mm, delta = 0.8391 mm
17-03-17 17:53:43.568 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:53:43.568 -07 000000424 INF: Z Motor: Entering MoveAbsStepped (DAC = 29996, sync = True, waitForSettling = False)
17-03-17 17:53:43.568 -07 000000424 INF: Z Motor: Moving to -0.137313 mm, started at -0.130955 mm, distance = -6.36 um
17-03-17 17:53:43.578 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:53:43.578 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:53:43.578 -07 000000551 INF: FPGA: Recv YRDPOS 137981
17-03-17 17:53:43.588 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 17:53:43.588 -07 000000482 INF: Y Motor: Encoder = 137981 = motor step 107797.7 = 67.3735 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:53:43.588 -07 000000482 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:53:43.588 -07 000000482 INF: Y Motor: Moving 1343 steps-20
17-03-17 17:53:43.588 -07 000000478 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:53:43.598 -07 000000424 INF: FPGA: Xmit ZDACW 29996\n [Z Motor]
17-03-17 17:53:43.598 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 17:53:43.608 -07 000000482 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:53:43.608 -07 000000424 INF: FPGA: 'ZDACW 29996' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 17:53:43.618 -07 000000424 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:53:43.618 -07 000000551 INF: FPGA: Recv ZDACR 29996
17-03-17 17:53:43.628 -07 000000424 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 17:53:43.628 -07 000000424 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-17 17:53:43.788 -07 000000551 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:53:43.788 -07 000000478 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 213 ms overall
17-03-17 17:53:43.868 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 589594896, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 17:53:43.868 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 17:53:43.868 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:53:43.878 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:53:43.878 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 17:53:43.878 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 17:53:43.878 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:53:43.878 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:53:43.878 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 506 ms.
17-03-17 17:53:43.878 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 506 ms.
17-03-17 17:53:43.978 -07 000000551 INF: FPGA: Recv YMVTILE
17-03-17 17:53:43.978 -07 000000482 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 17:53:44.008 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:53:44.018 -07 000000541 INF: FPGA: Recv YRDPOS 139687
17-03-17 17:53:44.018 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 17:53:44.018 -07 000000482 INF: Y Motor: Encoder = 139687 = motor step 109130.5 = 68.2065 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:53:44.018 -07 000000482 INF: Y Motor: Position error before settling (table move) = -12 encoder counts (-0.006 mm)
17-03-17 17:53:44.018 -07 000000482 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.114 mm/sec
17-03-17 17:53:44.218 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 6, FrontChillerTemperature: 3.963579,
17-03-17 17:53:44.968 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:53:44.968 -07 000000478 INF: FPGA: Recv YRDPOS 139687
17-03-17 17:53:44.978 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:53:44.978 -07 000000482 INF: Y Motor: Encoder = 139687 = motor step 109130.5 = 68.2065 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:53:44.988 -07 000000482 INF: Y Motor: After move to 68.212608, error = -0.006065, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:53:44.988 -07 000000482 INF: Y Motor: Position error after settling (table move) = -12 encoder counts (-0.006 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:53:44.988 -07 000000482 INF: Y Motor: Moved to 68.2065 after 1419 ms (table move)
17-03-17 17:53:44.998 -07 000000409 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137313 mm (DAC = 29996)
17-03-17 17:53:44.998 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:44.998 -07 000000576 INF: FPGA: Recv ZSGSRD 30663
17-03-17 17:53:45.008 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:45.008 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:45.008 -07 000000482 INF: FPGA: Recv ZSGSRD 30666
17-03-17 17:53:45.018 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:45.018 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:45.018 -07 000000576 INF: FPGA: Recv ZSGSRD 30662
17-03-17 17:53:45.028 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:45.028 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:45.028 -07 000000424 INF: FPGA: Recv ZSGSRD 30662
17-03-17 17:53:45.038 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:45.038 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:45.038 -07 000000576 INF: FPGA: Recv ZSGSRD 30670
17-03-17 17:53:45.048 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:45.048 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:45.048 -07 000000551 INF: FPGA: Recv ZSGSRD 30667
17-03-17 17:53:45.058 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:45.058 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:45.058 -07 000000576 INF: FPGA: Recv ZSGSRD 30670
17-03-17 17:53:45.068 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:45.068 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:45.068 -07 000000482 INF: FPGA: Recv ZSGSRD 30663
17-03-17 17:53:45.078 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:45.078 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:45.078 -07 000000551 INF: FPGA: Recv ZSGSRD 30669
17-03-17 17:53:45.088 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:53:45.088 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:45.088 -07 000000459 INF: FPGA: Recv ZSGSRD 30660
17-03-17 17:53:45.098 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:45.098 -07 000000409 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:53:45.098 -07 000000551 INF: FPGA: Recv ZPIEZORD 26500
17-03-17 17:53:45.108 -07 000000409 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:45.108 -07 000000409 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.577 V. Piezo Error = -9.2 V.
17-03-17 17:53:45.108 -07 000000409 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.3 um, Read 10 ADC samples: Avg = 30665 (-136.5 uncal um), Error = 0.8 uncal um, Median = 30664 (-136.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30660 (-136.5 uncal um), Max = 30670 (-136.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:53:45.108 -07 000000409 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30665, posNoise = 5, negNoise = 5
17-03-17 17:53:45.108 -07 000000409 INF: Z Motor: After move to -0.137313, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:53:45.108 -07 000000409 INF: Z Motor: Settle wait time = 1420 ms, measure time = 111 ms (allowed 150 ms), total time = 1531 ms
17-03-17 17:53:45.108 -07 000000409 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 17:53:45.148 -07 000000409 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1575 ms
17-03-17 17:53:45.148 -07 000000409 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:53:45.148 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:53:45.148 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:53:45.148 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:53:45.148 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:53:45.148 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:53:45.148 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:53:45.148 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:53:45.148 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:53:45.158 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 17:53:45.158 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:53:45.168 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 17:53:45.168 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 17:53:45.168 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:53:45.208 -07 000000482 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:53:45.408 -07 000000409 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:53:45.408 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:53:45.418 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:53:45.418 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2164362856, 0x0, 559484976) start.
17-03-17 17:53:45.448 -07 000000424 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:53:45.448 -07 000000459 INF: FPGA: Recv CAMSNAP
17-03-17 17:53:45.448 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 17:53:45.538 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2164362856, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 17:53:45.538 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:53:45.538 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:53:45.538 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 17:53:45.648 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:53:45.648 -07 000000424 INF: Autofocus start
17-03-17 17:53:45.648 -07 000000424 INF: MeasureProfile start
17-03-17 17:53:45.648 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:53:45.658 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:53:45.658 -07 000000551 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:53:45.658 -07 000000424 INF: MeasureProfile done
17-03-17 17:53:45.658 -07 000000424 INF: X=-80  Z correction [um]=-0.3928285
17-03-17 17:53:45.658 -07 000000424 INF: Autofocus finished
17-03-17 17:53:45.858 -07 000000448 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:53:45.858 -07 000000551 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:53:45.858 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20654296875, Z-position -0.137321817338235. ----------
17-03-17 17:53:45.858 -07 000000610 INF: Cycle	6	Tile	11	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:53:45.868 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28423, sync = True, waitForSettling = True)
17-03-17 17:53:45.868 -07 000000610 INF: Z Motor: Moving to -0.130112 mm, started at -0.137322 mm, distance = 7.21 um
17-03-17 17:53:45.868 -07 000000610 INF: FPGA: Xmit ZDACW 28423\n [Z Motor]
17-03-17 17:53:45.868 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 17:53:45.878 -07 000000610 INF: FPGA: 'ZDACW 28423' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:45.878 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:53:45.878 -07 000000409 INF: FPGA: Recv ZDACR 28423
17-03-17 17:53:45.888 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:45.888 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:53:46.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:46.038 -07 000000424 INF: FPGA: Recv ZSGSRD 29547
17-03-17 17:53:46.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:53:46.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:46.048 -07 000000576 INF: FPGA: Recv ZSGSRD 29540
17-03-17 17:53:46.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:46.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:46.058 -07 000000448 INF: FPGA: Recv ZSGSRD 29547
17-03-17 17:53:46.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:46.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:46.068 -07 000000576 INF: FPGA: Recv ZSGSRD 29546
17-03-17 17:53:46.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:46.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:46.078 -07 000000429 INF: FPGA: Recv ZSGSRD 29544
17-03-17 17:53:46.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:46.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:46.088 -07 000000459 INF: FPGA: Recv ZSGSRD 29539
17-03-17 17:53:46.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:46.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:46.098 -07 000000429 INF: FPGA: Recv ZSGSRD 29540
17-03-17 17:53:46.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:46.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:46.108 -07 000000459 INF: FPGA: Recv ZSGSRD 29547
17-03-17 17:53:46.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:46.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:46.118 -07 000000429 INF: FPGA: Recv ZSGSRD 29542
17-03-17 17:53:46.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:46.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:46.128 -07 000000576 INF: FPGA: Recv ZSGSRD 29545
17-03-17 17:53:46.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:46.138 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:53:46.138 -07 000000424 INF: FPGA: Recv ZPIEZORD 25068
17-03-17 17:53:46.148 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:46.148 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.337 V. Piezo Error = -9.8 V.
17-03-17 17:53:46.148 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.1 um, Read 10 ADC samples: Avg = 29544 (-129.3 uncal um), Error = 0.8 uncal um, Median = 29544 (-129.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29539 (-129.3 uncal um), Max = 29547 (-129.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:53:46.148 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29544, posNoise = 3, negNoise = 5
17-03-17 17:53:46.148 -07 000000610 INF: Z Motor: After move to -0.130112, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:53:46.148 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 17:53:46.148 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:53:46.148 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:53:46.148 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:53:46.148 -07 000000409 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:53:46.148 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:53:46.148 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:53:46.148 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:53:46.148 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:53:46.148 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:53:46.148 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:53:46.148 -07 000000424 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:53:46.148 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:53:46.158 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:53:46.158 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:53:46.158 -07 000000424 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:53:46.158 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:53:46.158 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:53:46.158 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:53:46.158 -07 000000424 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 17:53:46.168 -07 000000424 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:53:46.168 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28600 150\n [Camera]
17-03-17 17:53:46.368 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:53:46.538 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:53:46.538 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 5. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=54, R2=62, Total=116. Warn if over 250 bubbles per interval.
17-03-17 17:53:46.758 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:53:46.758 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:53:46.758 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:53:46.758 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:53:46.758 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:53:46.758 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:53:46.758 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:53:46.758 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2298580584, 0x0, 391868352) start.
17-03-17 17:53:46.768 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:53:46.768 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) start.
17-03-17 17:53:46.948 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28600 777
17-03-17 17:53:47.098 -07 000000424 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:53:47.138 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2298580584, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 17:53:47.138 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 17:53:47.138 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:53:47.138 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2334002848, 0x0, 418435064) end. Duration was 369 ms.
17-03-17 17:53:47.138 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-17 17:53:47.138 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:53:47.138 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:53:47.138 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 17:53:47.138 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:53:47.148 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 17:53:47.288 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:53:47.288 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:53:47.288 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:53:47.288 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:53:47.288 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 17:53:47.288 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:53:47.288 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:53:47.288 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:53:47.288 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:53:47.288 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2239612688, 0x0, 418435064) start.
17-03-17 17:53:47.478 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:53:47.478 -07 000000409 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:53:47.478 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28600 150' command took 2 ms to send, 1304 ms to get response, and 1313 ms overall
17-03-17 17:53:47.478 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:53:47.478 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20654296875, Z-Position -0.130120275527321. ------
17-03-17 17:53:47.478 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:53:47.488 -07 000000429 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13680 mm
17-03-17 17:53:47.488 -07 000000429 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:53:47.488 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:53:47.488 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 17:53:47.488 -07 000000551 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:53:47.488 -07 000000409 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 17:53:47.488 -07 000000409 INF: Y Motor: Moving to 69.0426 mm, started at 68.2065 mm, delta = 0.8361 mm
17-03-17 17:53:47.488 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 29884, sync = True, waitForSettling = False)
17-03-17 17:53:47.488 -07 000000576 INF: Z Motor: Moving to -0.136800 mm, started at -0.130120 mm, distance = -6.68 um
17-03-17 17:53:47.498 -07 000000576 INF: FPGA: Xmit ZDACW 29884\n [Z Motor]
17-03-17 17:53:47.498 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 17:53:47.508 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:53:47.508 -07 000000576 INF: FPGA: 'ZDACW 29884' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 17:53:47.508 -07 000000462 INF: FPGA: Recv YRDPOS 139687
17-03-17 17:53:47.518 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 17:53:47.518 -07 000000409 INF: Y Motor: Encoder = 139687 = motor step 109130.5 = 68.2065 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:53:47.518 -07 000000409 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:53:47.518 -07 000000409 INF: Y Motor: Moving 1338 steps-12
17-03-17 17:53:47.518 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:53:47.518 -07 000000459 INF: FPGA: Recv ZDACR 29884
17-03-17 17:53:47.528 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:53:47.528 -07 000000576 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-17 17:53:47.528 -07 000000409 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:53:47.668 -07 000000424 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 17:53:47.668 -07 000000424 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 17:53:47.668 -07 000000424 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:53:47.668 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2239612688, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 17:53:47.668 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 17:53:47.668 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:53:47.678 -07 000000424 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:53:47.678 -07 000000424 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 17:53:47.678 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:53:47.688 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 17:53:47.688 -07 000000626 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:53:47.688 -07 000000551 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 202 ms overall
17-03-17 17:53:47.898 -07 000000623 INF: FPGA: Recv YMVTILE
17-03-17 17:53:47.898 -07 000000409 INF: FPGA: 'YMVTILE 1327' command took 109 ms to send, 269 ms to get response, and 389 ms overall
17-03-17 17:53:47.938 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:53:47.938 -07 000000433 INF: FPGA: Recv YRDPOS 141370
17-03-17 17:53:47.948 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:53:47.948 -07 000000409 INF: Y Motor: Encoder = 141370 = motor step 110445.3 = 69.0283 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:53:47.948 -07 000000409 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 17:53:47.948 -07 000000409 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 389 ms, distance = 0.836 mm, average velocity = 2.149 mm/sec
17-03-17 17:53:48.898 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:53:48.898 -07 000000486 INF: FPGA: Recv YRDPOS 141370
17-03-17 17:53:48.908 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:53:48.908 -07 000000409 INF: Y Motor: Encoder = 141370 = motor step 110445.3 = 69.0283 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:53:48.928 -07 000000409 INF: Y Motor: After move to 69.042610, error = -0.014290, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:53:48.928 -07 000000409 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:53:48.928 -07 000000409 INF: Y Motor: Moved to 69.0283 after 1437 ms (table move)
17-03-17 17:53:48.928 -07 000000429 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136800 mm (DAC = 29884)
17-03-17 17:53:48.928 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:48.928 -07 000000551 INF: FPGA: Recv ZSGSRD 30590
17-03-17 17:53:48.938 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:53:48.938 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:48.938 -07 000000409 INF: FPGA: Recv ZSGSRD 30589
17-03-17 17:53:48.948 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:48.948 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:48.948 -07 000000482 INF: FPGA: Recv ZSGSRD 30575
17-03-17 17:53:48.958 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:48.958 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:48.958 -07 000000551 INF: FPGA: Recv ZSGSRD 30584
17-03-17 17:53:48.968 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:48.968 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:48.968 -07 000000482 INF: FPGA: Recv ZSGSRD 30582
17-03-17 17:53:48.978 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:48.978 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:48.978 -07 000000433 INF: FPGA: Recv ZSGSRD 30587
17-03-17 17:53:48.988 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:48.988 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:48.988 -07 000000576 INF: FPGA: Recv ZSGSRD 30584
17-03-17 17:53:48.998 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:48.998 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:48.998 -07 000000448 INF: FPGA: Recv ZSGSRD 30579
17-03-17 17:53:49.008 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:49.008 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:49.008 -07 000000433 INF: FPGA: Recv ZSGSRD 30589
17-03-17 17:53:49.018 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:49.018 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:49.018 -07 000000448 INF: FPGA: Recv ZSGSRD 30589
17-03-17 17:53:49.028 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:49.028 -07 000000429 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:53:49.028 -07 000000576 INF: FPGA: Recv ZPIEZORD 26411
17-03-17 17:53:49.038 -07 000000429 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:49.038 -07 000000429 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.560 V. Piezo Error = -9.2 V.
17-03-17 17:53:49.038 -07 000000429 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.8 um, Read 10 ADC samples: Avg = 30585 (-136.0 uncal um), Error = 0.8 uncal um, Median = 30586 (-136.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30575 (-135.9 uncal um), Max = 30590 (-136.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 17:53:49.038 -07 000000429 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30585, posNoise = 5, negNoise = 10
17-03-17 17:53:49.038 -07 000000429 INF: Z Motor: After move to -0.136800, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:53:49.038 -07 000000429 INF: Z Motor: Settle wait time = 1440 ms, measure time = 106 ms (allowed 150 ms), total time = 1546 ms
17-03-17 17:53:49.038 -07 000000429 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 17:53:49.088 -07 000000429 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-17 17:53:49.088 -07 000000429 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:53:49.088 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:53:49.088 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:53:49.088 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:53:49.088 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:53:49.088 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:53:49.088 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:53:49.088 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:53:49.088 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:53:49.098 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 17:53:49.098 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:53:49.098 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 17:53:49.098 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 17:53:49.108 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:53:49.148 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:53:49.348 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:53:49.348 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:53:49.348 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:53:49.358 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 17:53:49.388 -07 000000626 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:53:49.388 -07 000000486 INF: FPGA: Recv CAMSNAP
17-03-17 17:53:49.388 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 17:53:49.478 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 17:53:49.478 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:53:49.478 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:53:49.478 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 17:53:49.578 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 6, FrontChillerTemperature: 3.94992,
17-03-17 17:53:49.588 -07 000000424 INF: Autofocus start
17-03-17 17:53:49.588 -07 000000424 INF: MeasureProfile start
17-03-17 17:53:49.598 -07 000000409 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:53:49.598 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:53:49.608 -07 000000409 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 17:53:49.608 -07 000000409 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:53:49.608 -07 000000424 INF: MeasureProfile done
17-03-17 17:53:49.608 -07 000000424 INF: X=-32  Z correction [um]=-0.1591732
17-03-17 17:53:49.608 -07 000000424 INF: Autofocus finished
17-03-17 17:53:49.808 -07 000000424 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:53:49.808 -07 000000409 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:53:49.808 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.0283203125, Z-position -0.136807880366894. ----------
17-03-17 17:53:49.818 -07 000000610 INF: Cycle	6	Tile	12	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:53:49.818 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28362, sync = True, waitForSettling = True)
17-03-17 17:53:49.818 -07 000000610 INF: Z Motor: Moving to -0.129833 mm, started at -0.136808 mm, distance = 6.97 um
17-03-17 17:53:49.818 -07 000000610 INF: FPGA: Xmit ZDACW 28362\n [Z Motor]
17-03-17 17:53:49.818 -07 000000424 INF: FPGA: Recv ZDACW
17-03-17 17:53:49.828 -07 000000610 INF: FPGA: 'ZDACW 28362' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:53:49.828 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:53:49.828 -07 000000626 INF: FPGA: Recv ZDACR 28362
17-03-17 17:53:49.838 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:49.838 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:53:49.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:49.988 -07 000000459 INF: FPGA: Recv ZSGSRD 29501
17-03-17 17:53:49.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:49.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:49.998 -07 000000433 INF: FPGA: Recv ZSGSRD 29501
17-03-17 17:53:50.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:50.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:50.008 -07 000000551 INF: FPGA: Recv ZSGSRD 29500
17-03-17 17:53:50.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:50.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:50.018 -07 000000627 INF: FPGA: Recv ZSGSRD 29501
17-03-17 17:53:50.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:50.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:50.028 -07 000000424 INF: FPGA: Recv ZSGSRD 29498
17-03-17 17:53:50.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:50.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:50.038 -07 000000576 INF: FPGA: Recv ZSGSRD 29498
17-03-17 17:53:50.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:50.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:50.048 -07 000000462 INF: FPGA: Recv ZSGSRD 29497
17-03-17 17:53:50.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:50.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:50.058 -07 000000627 INF: FPGA: Recv ZSGSRD 29503
17-03-17 17:53:50.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:50.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:50.068 -07 000000424 INF: FPGA: Recv ZSGSRD 29499
17-03-17 17:53:50.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:50.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:50.078 -07 000000448 INF: FPGA: Recv ZSGSRD 29496
17-03-17 17:53:50.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:50.088 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:53:50.088 -07 000000462 INF: FPGA: Recv ZPIEZORD 25045
17-03-17 17:53:50.098 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:50.098 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.328 V. Piezo Error = -9.8 V.
17-03-17 17:53:50.098 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.8 um, Read 10 ADC samples: Avg = 29499 (-129.1 uncal um), Error = 0.8 uncal um, Median = 29500 (-129.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29496 (-129.0 uncal um), Max = 29503 (-129.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 17:53:50.098 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29499, posNoise = 4, negNoise = 3
17-03-17 17:53:50.098 -07 000000610 INF: Z Motor: After move to -0.129833, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:53:50.098 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 17:53:50.098 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:53:50.098 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:53:50.098 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:53:50.098 -07 000000409 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:53:50.098 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:53:50.098 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:53:50.098 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:53:50.098 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:53:50.098 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:53:50.098 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:53:50.098 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:53:50.098 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:53:50.108 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:53:50.108 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:53:50.108 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:53:50.108 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:53:50.118 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-17 17:53:50.118 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 17:53:50.118 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-17 17:53:50.118 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 17:53:50.118 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28539 150\n [Camera]
17-03-17 17:53:50.318 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:53:50.718 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:53:50.718 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:53:50.718 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:53:50.718 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:53:50.718 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:53:50.718 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:53:50.718 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:53:50.718 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 17:53:50.718 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:53:50.718 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 17:53:50.908 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28539 775
17-03-17 17:53:51.058 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:53:51.088 -07 000000626 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 17:53:51.088 -07 000000626 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-17 17:53:51.088 -07 000000626 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:53:51.088 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 17:53:51.098 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 17:53:51.098 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:53:51.098 -07 000000626 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:53:51.098 -07 000000626 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 17:53:51.098 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:53:51.108 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 17:53:51.248 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:53:51.248 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:53:51.248 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:53:51.248 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:53:51.248 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:53:51.248 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:53:51.248 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:53:51.248 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 17:53:51.258 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:53:51.258 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2315455648, 0x0, 418435064) start.
17-03-17 17:53:51.438 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:53:51.438 -07 000000626 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:53:51.438 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28539 150' command took 2 ms to send, 1312 ms to get response, and 1316 ms overall
17-03-17 17:53:51.438 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:53:51.438 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.0283203125, Z-Position -0.129831185980941. ------
17-03-17 17:53:51.438 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:53:51.438 -07 000000482 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13628 mm
17-03-17 17:53:51.438 -07 000000482 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:53:51.448 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:53:51.448 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 17:53:51.448 -07 000000486 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 17:53:51.448 -07 000000486 INF: Y Motor: Moving to 69.8726 mm, started at 69.0283 mm, delta = 0.8443 mm
17-03-17 17:53:51.448 -07 000000409 INF: Z Motor: Entering MoveAbsStepped (DAC = 29770, sync = True, waitForSettling = False)
17-03-17 17:53:51.448 -07 000000409 INF: Z Motor: Moving to -0.136278 mm, started at -0.129831 mm, distance = -6.45 um
17-03-17 17:53:51.448 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:53:51.448 -07 000000448 INF: FPGA: Recv YRDPOS 141371
17-03-17 17:53:51.458 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:53:51.458 -07 000000486 INF: Y Motor: Encoder = 141371 = motor step 110446.1 = 69.0288 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:53:51.458 -07 000000409 INF: FPGA: Xmit ZDACW 29770\n [Z Motor]
17-03-17 17:53:51.458 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 17:53:51.458 -07 000000486 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:53:51.458 -07 000000486 INF: Y Motor: Moving 1350 steps-29
17-03-17 17:53:51.468 -07 000000409 INF: FPGA: 'ZDACW 29770' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 17:53:51.468 -07 000000459 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:53:51.478 -07 000000486 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:53:51.488 -07 000000409 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:53:51.488 -07 000000626 INF: FPGA: Recv ZDACR 29770
17-03-17 17:53:51.498 -07 000000409 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:53:51.498 -07 000000409 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-17 17:53:51.538 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:53:51.538 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 5. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=54, R2=62, Total=116. Warn if over 250 bubbles per interval.
17-03-17 17:53:51.628 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2315455648, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 17:53:51.628 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 17:53:51.628 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:53:51.628 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 17:53:51.628 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 17:53:51.628 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:53:51.638 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:53:51.638 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:53:51.638 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 17:53:51.638 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 17:53:51.668 -07 000000409 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:53:51.668 -07 000000459 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 219 ms overall
17-03-17 17:53:51.848 -07 000000448 INF: FPGA: Recv YMVTILE
17-03-17 17:53:51.848 -07 000000486 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 390 ms overall
17-03-17 17:53:51.888 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:53:51.888 -07 000000433 INF: FPGA: Recv YRDPOS 143082
17-03-17 17:53:51.898 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:51.898 -07 000000486 INF: Y Motor: Encoder = 143082 = motor step 111782.8 = 69.8643 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:53:51.898 -07 000000486 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 17:53:51.898 -07 000000486 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.844 mm, average velocity = 2.165 mm/sec
17-03-17 17:53:52.848 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:53:52.848 -07 000000448 INF: FPGA: Recv YRDPOS 143083
17-03-17 17:53:52.858 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:53:52.858 -07 000000486 INF: Y Motor: Encoder = 143083 = motor step 111783.6 = 69.8647 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:53:52.868 -07 000000486 INF: Y Motor: After move to 69.872612, error = -0.007866, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:53:52.868 -07 000000486 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 17:53:52.868 -07 000000486 INF: Y Motor: Moved to 69.8647 after 1427 ms (table move)
17-03-17 17:53:52.878 -07 000000482 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136278 mm (DAC = 29770)
17-03-17 17:53:52.878 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:52.878 -07 000000459 INF: FPGA: Recv ZSGSRD 30498
17-03-17 17:53:52.888 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:53:52.888 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:52.888 -07 000000448 INF: FPGA: Recv ZSGSRD 30499
17-03-17 17:53:52.898 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:52.898 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:52.898 -07 000000409 INF: FPGA: Recv ZSGSRD 30501
17-03-17 17:53:52.908 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:52.908 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:52.908 -07 000000459 INF: FPGA: Recv ZSGSRD 30506
17-03-17 17:53:52.918 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:52.918 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:52.918 -07 000000433 INF: FPGA: Recv ZSGSRD 30503
17-03-17 17:53:52.928 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:52.928 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:52.928 -07 000000626 INF: FPGA: Recv ZSGSRD 30499
17-03-17 17:53:52.938 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:52.938 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:52.938 -07 000000623 INF: FPGA: Recv ZSGSRD 30508
17-03-17 17:53:52.948 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:52.948 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:52.948 -07 000000486 INF: FPGA: Recv ZSGSRD 30504
17-03-17 17:53:52.958 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:52.958 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:52.958 -07 000000409 INF: FPGA: Recv ZSGSRD 30500
17-03-17 17:53:52.968 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:52.968 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:52.968 -07 000000486 INF: FPGA: Recv ZSGSRD 30499
17-03-17 17:53:52.978 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:52.978 -07 000000482 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:53:52.978 -07 000000627 INF: FPGA: Recv ZPIEZORD 26380
17-03-17 17:53:52.988 -07 000000482 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:52.988 -07 000000482 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.4 V, since DAC is at 4.543 V. Piezo Error = -9.1 V.
17-03-17 17:53:52.988 -07 000000482 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.3 um, Read 10 ADC samples: Avg = 30502 (-135.5 uncal um), Error = 0.8 uncal um, Median = 30500 (-135.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30498 (-135.5 uncal um), Max = 30508 (-135.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:53:52.988 -07 000000482 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30502, posNoise = 6, negNoise = 4
17-03-17 17:53:52.988 -07 000000482 INF: Z Motor: After move to -0.136278, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:53:52.988 -07 000000482 INF: Z Motor: Settle wait time = 1429 ms, measure time = 108 ms (allowed 150 ms), total time = 1537 ms
17-03-17 17:53:52.988 -07 000000482 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 17:53:53.038 -07 000000482 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1592 ms
17-03-17 17:53:53.038 -07 000000482 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:53:53.038 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:53:53.038 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:53:53.038 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:53:53.038 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:53:53.038 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:53:53.038 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:53:53.038 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:53:53.038 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:53:53.048 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:53:53.048 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:53:53.058 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 17:53:53.058 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 17:53:53.058 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:53:53.098 -07 000000433 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:53:53.298 -07 000000409 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:53:53.298 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:53:53.298 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:53:53.308 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2350877912, 0x0, 559484976) start.
17-03-17 17:53:53.338 -07 000000623 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:53:53.338 -07 000000486 INF: FPGA: Recv CAMSNAP
17-03-17 17:53:53.338 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 17:53:53.428 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2350877912, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 17:53:53.428 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:53:53.428 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:53:53.428 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-17 17:53:53.538 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:53:53.538 -07 000000627 INF: Autofocus start
17-03-17 17:53:53.538 -07 000000627 INF: MeasureProfile start
17-03-17 17:53:53.538 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:53:53.548 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 17:53:53.548 -07 000000486 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:53:53.548 -07 000000627 INF: MeasureProfile done
17-03-17 17:53:53.548 -07 000000627 INF: X=0  Z correction [um]=-0.02394831
17-03-17 17:53:53.548 -07 000000627 INF: Autofocus finished
17-03-17 17:53:53.748 -07 000000448 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:53:53.748 -07 000000486 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-17 17:53:53.758 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86474609375, Z-position -0.136274670759128. ----------
17-03-17 17:53:53.758 -07 000000610 INF: Cycle	6	Tile	13	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:53:53.758 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28277, sync = True, waitForSettling = True)
17-03-17 17:53:53.758 -07 000000610 INF: Z Motor: Moving to -0.129444 mm, started at -0.136275 mm, distance = 6.83 um
17-03-17 17:53:53.758 -07 000000610 INF: FPGA: Xmit ZDACW 28277\n [Z Motor]
17-03-17 17:53:53.758 -07 000000409 INF: FPGA: Recv ZDACW
17-03-17 17:53:53.768 -07 000000610 INF: FPGA: 'ZDACW 28277' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 17:53:53.768 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:53:53.768 -07 000000482 INF: FPGA: Recv ZDACR 28277
17-03-17 17:53:53.778 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:53.778 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:53:53.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:53.928 -07 000000433 INF: FPGA: Recv ZSGSRD 29433
17-03-17 17:53:53.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:53:53.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:53.938 -07 000000627 INF: FPGA: Recv ZSGSRD 29439
17-03-17 17:53:53.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:53.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:53.948 -07 000000482 INF: FPGA: Recv ZSGSRD 29438
17-03-17 17:53:53.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:53.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:53.958 -07 000000623 INF: FPGA: Recv ZSGSRD 29439
17-03-17 17:53:53.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:53.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:53.968 -07 000000482 INF: FPGA: Recv ZSGSRD 29439
17-03-17 17:53:53.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:53.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:53.978 -07 000000433 INF: FPGA: Recv ZSGSRD 29436
17-03-17 17:53:53.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:53.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:53.988 -07 000000482 INF: FPGA: Recv ZSGSRD 29445
17-03-17 17:53:53.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:53.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:53.998 -07 000000459 INF: FPGA: Recv ZSGSRD 29436
17-03-17 17:53:54.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:54.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:54.008 -07 000000482 INF: FPGA: Recv ZSGSRD 29439
17-03-17 17:53:54.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:54.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:54.018 -07 000000627 INF: FPGA: Recv ZSGSRD 29441
17-03-17 17:53:54.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:54.028 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:53:54.028 -07 000000459 INF: FPGA: Recv ZPIEZORD 24966
17-03-17 17:53:54.038 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:54.038 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.315 V. Piezo Error = -9.8 V.
17-03-17 17:53:54.038 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.4 um, Read 10 ADC samples: Avg = 29438 (-128.7 uncal um), Error = 0.8 uncal um, Median = 29439 (-128.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29433 (-128.6 uncal um), Max = 29445 (-128.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:53:54.038 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29438, posNoise = 7, negNoise = 5
17-03-17 17:53:54.038 -07 000000610 INF: Z Motor: After move to -0.129444, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:53:54.038 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 17:53:54.038 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:53:54.038 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:53:54.038 -07 000000409 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:53:54.038 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:53:54.038 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:53:54.038 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:53:54.038 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:53:54.038 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:53:54.038 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:53:54.038 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:53:54.038 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:53:54.038 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:53:54.048 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:53:54.048 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:53:54.048 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:53:54.048 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:53:54.058 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:53:54.058 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 17:53:54.058 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 17:53:54.058 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:53:54.058 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28454 150\n [Camera]
17-03-17 17:53:54.258 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:53:54.648 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:53:54.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:53:54.648 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:53:54.648 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:53:54.648 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 17:53:54.648 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:53:54.648 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:53:54.658 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:53:54.658 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:53:54.658 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 17:53:54.838 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28454 775
17-03-17 17:53:54.968 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 6, FrontChillerTemperature: 3.933545,
17-03-17 17:53:54.988 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:53:55.028 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 17:53:55.028 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 17:53:55.028 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:53:55.028 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 17:53:55.028 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 17:53:55.028 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:53:55.028 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:53:55.038 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:53:55.038 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 17:53:55.038 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 17:53:55.178 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:53:55.178 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:53:55.178 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:53:55.178 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:53:55.178 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 17:53:55.178 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:53:55.178 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:53:55.178 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:53:55.178 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:53:55.178 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 17:53:55.368 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:53:55.368 -07 000000627 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:53:55.368 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28454 150' command took 2 ms to send, 1305 ms to get response, and 1312 ms overall
17-03-17 17:53:55.368 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:53:55.368 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86474609375, Z-Position -0.129439309040294. ------
17-03-17 17:53:55.488 -07 000000448 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13584 mm
17-03-17 17:53:55.488 -07 000000448 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:53:55.488 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:53:55.498 -07 000000431 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:53:55.498 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 17:53:55.498 -07 000000486 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 17:53:55.498 -07 000000486 INF: Y Motor: Moving to 70.7026 mm, started at 69.8647 mm, delta = 0.8379 mm
17-03-17 17:53:55.498 -07 000000459 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:53:55.498 -07 000000478 INF: Z Motor: Entering MoveAbsStepped (DAC = 29674, sync = True, waitForSettling = False)
17-03-17 17:53:55.498 -07 000000478 INF: Z Motor: Moving to -0.135839 mm, started at -0.129439 mm, distance = -6.40 um
17-03-17 17:53:55.508 -07 000000478 INF: FPGA: Xmit ZDACW 29674\n [Z Motor]
17-03-17 17:53:55.508 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 17:53:55.518 -07 000000478 INF: FPGA: 'ZDACW 29674' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 17:53:55.518 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:53:55.518 -07 000000626 INF: FPGA: Recv YRDPOS 143083
17-03-17 17:53:55.528 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 17:53:55.528 -07 000000478 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:53:55.528 -07 000000486 INF: Y Motor: Encoder = 143083 = motor step 111783.6 = 69.8647 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:53:55.528 -07 000000486 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:53:55.528 -07 000000486 INF: Y Motor: Moving 1341 steps-17
17-03-17 17:53:55.528 -07 000000627 INF: FPGA: Recv ZDACR 29674
17-03-17 17:53:55.538 -07 000000478 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:53:55.538 -07 000000478 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-17 17:53:55.538 -07 000000486 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:53:55.558 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 17:53:55.558 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 17:53:55.558 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:53:55.558 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:53:55.558 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 17:53:55.558 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 17:53:55.558 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:53:55.568 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 17:53:55.568 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 17:53:55.568 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 17:53:55.698 -07 000000482 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:53:55.698 -07 000000459 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 17:53:55.908 -07 000000409 INF: FPGA: Recv YMVTILE
17-03-17 17:53:55.908 -07 000000486 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 17:53:55.948 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:53:55.948 -07 000000626 INF: FPGA: Recv YRDPOS 144772
17-03-17 17:53:55.958 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:55.958 -07 000000486 INF: Y Motor: Encoder = 144772 = motor step 113103.1 = 70.6895 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:53:55.958 -07 000000486 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 17:53:55.958 -07 000000486 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.838 mm, average velocity = 2.159 mm/sec
17-03-17 17:53:56.538 -07 000000626 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:53:56.538 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 5. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=54, R2=62, Total=116. Warn if over 250 bubbles per interval.
17-03-17 17:53:56.908 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:53:56.908 -07 000000623 INF: FPGA: Recv YRDPOS 144773
17-03-17 17:53:56.918 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:53:56.918 -07 000000486 INF: Y Motor: Encoder = 144773 = motor step 113103.9 = 70.6899 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:53:56.938 -07 000000486 INF: Y Motor: After move to 70.702606, error = -0.012665, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:53:56.938 -07 000000486 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 17:53:56.938 -07 000000486 INF: Y Motor: Moved to 70.6899 after 1439 ms (table move)
17-03-17 17:53:56.938 -07 000000448 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135839 mm (DAC = 29674)
17-03-17 17:53:56.938 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:56.938 -07 000000409 INF: FPGA: Recv ZSGSRD 30432
17-03-17 17:53:56.948 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:53:56.948 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:56.948 -07 000000623 INF: FPGA: Recv ZSGSRD 30428
17-03-17 17:53:56.958 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:56.958 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:56.958 -07 000000409 INF: FPGA: Recv ZSGSRD 30434
17-03-17 17:53:56.968 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:56.968 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:56.968 -07 000000623 INF: FPGA: Recv ZSGSRD 30442
17-03-17 17:53:56.978 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:56.978 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:56.978 -07 000000623 INF: FPGA: Recv ZSGSRD 30435
17-03-17 17:53:56.988 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:56.988 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:56.988 -07 000000623 INF: FPGA: Recv ZSGSRD 30437
17-03-17 17:53:56.998 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:56.998 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:56.998 -07 000000486 INF: FPGA: Recv ZSGSRD 30438
17-03-17 17:53:57.008 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:57.008 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:57.008 -07 000000623 INF: FPGA: Recv ZSGSRD 30439
17-03-17 17:53:57.018 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:57.018 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:57.018 -07 000000478 INF: FPGA: Recv ZSGSRD 30438
17-03-17 17:53:57.028 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:57.028 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:57.028 -07 000000623 INF: FPGA: Recv ZSGSRD 30432
17-03-17 17:53:57.038 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:57.038 -07 000000448 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:53:57.038 -07 000000433 INF: FPGA: Recv ZPIEZORD 26352
17-03-17 17:53:57.048 -07 000000448 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:57.048 -07 000000448 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.3 V, since DAC is at 4.528 V. Piezo Error = -9.0 V.
17-03-17 17:53:57.048 -07 000000448 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.8 um, Read 10 ADC samples: Avg = 30436 (-135.1 uncal um), Error = 0.8 uncal um, Median = 30436 (-135.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30428 (-135.0 uncal um), Max = 30442 (-135.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 17:53:57.048 -07 000000448 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30436, posNoise = 6, negNoise = 8
17-03-17 17:53:57.048 -07 000000448 INF: Z Motor: After move to -0.135839, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:53:57.048 -07 000000448 INF: Z Motor: Settle wait time = 1442 ms, measure time = 106 ms (allowed 150 ms), total time = 1548 ms
17-03-17 17:53:57.048 -07 000000448 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 17:53:57.098 -07 000000448 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1602 ms
17-03-17 17:53:57.098 -07 000000448 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:53:57.098 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:53:57.098 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:53:57.098 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:53:57.098 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:53:57.098 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:53:57.098 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:53:57.098 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:53:57.098 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:53:57.108 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:53:57.108 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:53:57.108 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 17:53:57.108 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 17:53:57.118 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:53:57.158 -07 000000482 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:53:57.358 -07 000000478 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:53:57.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:53:57.358 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:53:57.358 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 17:53:57.398 -07 000000486 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:53:57.398 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 17:53:57.398 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 17:53:57.478 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 17:53:57.478 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:53:57.478 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:53:57.478 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 17:53:57.498 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:53:57.498 -07 000000433 INF: Autofocus start
17-03-17 17:53:57.498 -07 000000433 INF: MeasureProfile start
17-03-17 17:53:57.498 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:53:57.508 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:53:57.508 -07 000000482 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:53:57.508 -07 000000433 INF: MeasureProfile done
17-03-17 17:53:57.508 -07 000000433 INF: X=16  Z correction [um]=0.0530179
17-03-17 17:53:57.508 -07 000000433 INF: Autofocus finished
17-03-17 17:53:57.708 -07 000000409 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:53:57.708 -07 000000482 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:53:57.708 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68994140625, Z-position -0.135850672757771. ----------
17-03-17 17:53:57.708 -07 000000610 INF: Cycle	6	Tile	14	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:53:57.718 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28198, sync = True, waitForSettling = True)
17-03-17 17:53:57.718 -07 000000610 INF: Z Motor: Moving to -0.129082 mm, started at -0.135851 mm, distance = 6.77 um
17-03-17 17:53:57.718 -07 000000610 INF: FPGA: Xmit ZDACW 28198\n [Z Motor]
17-03-17 17:53:57.718 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 17:53:57.728 -07 000000610 INF: FPGA: 'ZDACW 28198' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 17:53:57.728 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:53:57.728 -07 000000627 INF: FPGA: Recv ZDACR 28198
17-03-17 17:53:57.738 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:57.738 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:53:57.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:57.888 -07 000000448 INF: FPGA: Recv ZSGSRD 29381
17-03-17 17:53:57.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:57.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:57.898 -07 000000433 INF: FPGA: Recv ZSGSRD 29386
17-03-17 17:53:57.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:57.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:57.908 -07 000000623 INF: FPGA: Recv ZSGSRD 29383
17-03-17 17:53:57.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:57.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:57.918 -07 000000409 INF: FPGA: Recv ZSGSRD 29390
17-03-17 17:53:57.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:57.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:57.928 -07 000000623 INF: FPGA: Recv ZSGSRD 29383
17-03-17 17:53:57.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:57.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:57.938 -07 000000478 INF: FPGA: Recv ZSGSRD 29384
17-03-17 17:53:57.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:57.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:57.948 -07 000000433 INF: FPGA: Recv ZSGSRD 29391
17-03-17 17:53:57.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:57.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:57.958 -07 000000478 INF: FPGA: Recv ZSGSRD 29384
17-03-17 17:53:57.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:57.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:57.968 -07 000000433 INF: FPGA: Recv ZSGSRD 29374
17-03-17 17:53:57.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:57.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:53:57.978 -07 000000482 INF: FPGA: Recv ZSGSRD 29386
17-03-17 17:53:57.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:57.988 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:53:57.988 -07 000000433 INF: FPGA: Recv ZPIEZORD 24946
17-03-17 17:53:57.998 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:53:57.998 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.303 V. Piezo Error = -9.7 V.
17-03-17 17:53:57.998 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.1 um, Read 10 ADC samples: Avg = 29384 (-128.3 uncal um), Error = 0.8 uncal um, Median = 29384 (-128.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 29374 (-128.3 uncal um), Max = 29391 (-128.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 17:53:57.998 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29384, posNoise = 7, negNoise = 10
17-03-17 17:53:57.998 -07 000000610 INF: Z Motor: After move to -0.129082, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:53:57.998 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 17:53:57.998 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:53:57.998 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:53:57.998 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:53:57.998 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:53:57.998 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:53:57.998 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:53:57.998 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:53:57.998 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:53:57.998 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:53:57.998 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:53:57.998 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:53:57.998 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:53:58.008 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:53:58.008 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:53:58.008 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:53:58.008 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:53:58.008 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:53:58.008 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 17:53:58.018 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 17:53:58.018 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 17:53:58.018 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28375 150\n [Camera]
17-03-17 17:53:58.218 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:53:58.608 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:53:58.608 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:53:58.608 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:53:58.608 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:53:58.608 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:53:58.608 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:53:58.618 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:53:58.618 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 17:53:58.618 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:53:58.618 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 17:53:58.798 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28375 775
17-03-17 17:53:58.948 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP turning grn on 927
17-03-17 17:53:58.988 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 17:53:58.988 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 17:53:58.988 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:53:58.988 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 369 ms.
17-03-17 17:53:58.988 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-17 17:53:58.988 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:53:58.988 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:53:58.988 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 17:53:58.998 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:53:58.998 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 17:53:59.138 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:53:59.138 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:53:59.138 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:53:59.138 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:53:59.138 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:53:59.138 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:53:59.148 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:53:59.148 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 17:53:59.148 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:53:59.148 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 17:53:59.328 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP 1308
17-03-17 17:53:59.328 -07 000000486 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:53:59.328 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28375 150' command took 2 ms to send, 1309 ms to get response, and 1314 ms overall
17-03-17 17:53:59.338 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:53:59.338 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68994140625, Z-Position -0.129092401584639. ------
17-03-17 17:53:59.468 -07 000000478 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13584 mm
17-03-17 17:53:59.468 -07 000000478 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:53:59.468 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:53:59.468 -07 000000486 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 17:53:59.468 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 29674, sync = True, waitForSettling = False)
17-03-17 17:53:59.468 -07 000000623 INF: Z Motor: Moving to -0.135839 mm, started at -0.129092 mm, distance = -6.75 um
17-03-17 17:53:59.468 -07 000000486 INF: Y Motor: Moving to 71.5326 mm, started at 70.6899 mm, delta = 0.8427 mm
17-03-17 17:53:59.468 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:53:59.478 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:53:59.478 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:53:59.478 -07 000000482 INF: FPGA: Recv YRDPOS 144773
17-03-17 17:53:59.488 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 17:53:59.488 -07 000000623 INF: FPGA: Xmit ZDACW 29674\n [Z Motor]
17-03-17 17:53:59.488 -07 000000486 INF: Y Motor: Encoder = 144773 = motor step 113103.9 = 70.6899 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:53:59.488 -07 000000486 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:53:59.488 -07 000000486 INF: Y Motor: Moving 1348 steps-27
17-03-17 17:53:59.488 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 17:53:59.498 -07 000000627 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:53:59.498 -07 000000623 INF: FPGA: 'ZDACW 29674' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 17:53:59.508 -07 000000486 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:53:59.518 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:53:59.518 -07 000000482 INF: FPGA: Recv ZDACR 29674
17-03-17 17:53:59.528 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:53:59.528 -07 000000623 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 17:53:59.538 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 17:53:59.538 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 17:53:59.538 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:53:59.538 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:53:59.538 -07 000000431 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 17:53:59.538 -07 000000431 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 17:53:59.538 -07 000000431 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:53:59.538 -07 000000431 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:53:59.538 -07 000000431 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 17:53:59.548 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 17:53:59.698 -07 000000433 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:53:59.698 -07 000000627 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 17:53:59.878 -07 000000433 INF: FPGA: Recv YMVTILE
17-03-17 17:53:59.878 -07 000000486 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 17:53:59.908 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:53:59.918 -07 000000627 INF: FPGA: Recv YRDPOS 146474
17-03-17 17:53:59.918 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 17:53:59.918 -07 000000486 INF: Y Motor: Encoder = 146474 = motor step 114432.8 = 71.5205 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:53:59.918 -07 000000486 INF: Y Motor: Position error before settling (table move) = -25 encoder counts (-0.012 mm)
17-03-17 17:53:59.918 -07 000000486 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.843 mm, average velocity = 2.123 mm/sec
17-03-17 17:54:00.338 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 6, FrontChillerTemperature: 3.922606,
17-03-17 17:54:00.868 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:54:00.868 -07 000000623 INF: FPGA: Recv YRDPOS 146474
17-03-17 17:54:00.878 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:54:00.878 -07 000000486 INF: Y Motor: Encoder = 146474 = motor step 114432.8 = 71.5205 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:54:00.898 -07 000000486 INF: Y Motor: After move to 71.532608, error = -0.012100, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:54:00.898 -07 000000486 INF: Y Motor: Position error after settling (table move) = -25 encoder counts (-0.012 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:54:00.898 -07 000000486 INF: Y Motor: Moved to 71.5205 after 1423 ms (table move)
17-03-17 17:54:00.898 -07 000000478 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135839 mm (DAC = 29674)
17-03-17 17:54:00.898 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:00.898 -07 000000627 INF: FPGA: Recv ZSGSRD 30431
17-03-17 17:54:00.908 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:54:00.908 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:00.908 -07 000000623 INF: FPGA: Recv ZSGSRD 30438
17-03-17 17:54:00.918 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:00.918 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:00.918 -07 000000482 INF: FPGA: Recv ZSGSRD 30426
17-03-17 17:54:00.928 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:00.928 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:00.928 -07 000000623 INF: FPGA: Recv ZSGSRD 30441
17-03-17 17:54:00.938 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:00.938 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:00.938 -07 000000448 INF: FPGA: Recv ZSGSRD 30432
17-03-17 17:54:00.948 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:00.948 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:00.948 -07 000000627 INF: FPGA: Recv ZSGSRD 30432
17-03-17 17:54:00.958 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:00.958 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:00.958 -07 000000433 INF: FPGA: Recv ZSGSRD 30435
17-03-17 17:54:00.968 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:00.968 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:00.968 -07 000000627 INF: FPGA: Recv ZSGSRD 30435
17-03-17 17:54:00.978 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:00.978 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:00.978 -07 000000431 INF: FPGA: Recv ZSGSRD 30447
17-03-17 17:54:00.988 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:00.988 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:00.988 -07 000000623 INF: FPGA: Recv ZSGSRD 30430
17-03-17 17:54:00.998 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:00.998 -07 000000478 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:54:00.998 -07 000000486 INF: FPGA: Recv ZPIEZORD 26322
17-03-17 17:54:01.008 -07 000000478 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:01.008 -07 000000478 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.3 V, since DAC is at 4.528 V. Piezo Error = -9.0 V.
17-03-17 17:54:01.008 -07 000000478 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.8 um, Read 10 ADC samples: Avg = 30435 (-135.1 uncal um), Error = 0.8 uncal um, Median = 30434 (-135.0 uncal um), StdDev = 6 (0.0 uncal um), Range = 21 (0.1 uncal um), Min = 30426 (-135.0 uncal um), Max = 30447 (-135.1 uncal um), Pos Noise = 12 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 17:54:01.008 -07 000000478 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30435, posNoise = 12, negNoise = 9
17-03-17 17:54:01.008 -07 000000478 INF: Z Motor: After move to -0.135839, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:54:01.008 -07 000000478 INF: Z Motor: Settle wait time = 1426 ms, measure time = 107 ms (allowed 150 ms), total time = 1533 ms
17-03-17 17:54:01.008 -07 000000478 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 17:54:01.058 -07 000000478 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1586 ms
17-03-17 17:54:01.058 -07 000000478 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:54:01.058 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:54:01.058 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:54:01.058 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:54:01.058 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:54:01.058 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:54:01.058 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:54:01.058 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:54:01.058 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:54:01.068 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:54:01.068 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:54:01.078 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 17:54:01.078 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 17:54:01.078 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:54:01.128 -07 000000478 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:54:01.318 -07 000000448 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:54:01.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:54:01.318 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:54:01.328 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 17:54:01.358 -07 000000541 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:54:01.358 -07 000000486 INF: FPGA: Recv CAMSNAP
17-03-17 17:54:01.358 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 17:54:01.448 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 17:54:01.448 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:54:01.448 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:54:01.448 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 17:54:01.538 -07 000000409 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:54:01.538 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 5. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=54, R2=62, Total=116. Warn if over 250 bubbles per interval.
17-03-17 17:54:01.558 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:54:01.558 -07 000000431 INF: Autofocus start
17-03-17 17:54:01.558 -07 000000431 INF: MeasureProfile start
17-03-17 17:54:01.558 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:54:01.568 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:54:01.568 -07 000000541 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:54:01.568 -07 000000431 INF: MeasureProfile done
17-03-17 17:54:01.568 -07 000000431 INF: X=-32  Z correction [um]=-0.1591732
17-03-17 17:54:01.568 -07 000000431 INF: Autofocus finished
17-03-17 17:54:01.768 -07 000000482 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:54:01.768 -07 000000541 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:54:01.768 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.5205078125, Z-position -0.13584424854563. ----------
17-03-17 17:54:01.768 -07 000000610 INF: Cycle	6	Tile	15	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:54:01.778 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28152, sync = True, waitForSettling = True)
17-03-17 17:54:01.778 -07 000000610 INF: Z Motor: Moving to -0.128872 mm, started at -0.135844 mm, distance = 6.97 um
17-03-17 17:54:01.778 -07 000000610 INF: FPGA: Xmit ZDACW 28152\n [Z Motor]
17-03-17 17:54:01.778 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 17:54:01.788 -07 000000610 INF: FPGA: 'ZDACW 28152' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:01.788 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:54:01.788 -07 000000448 INF: FPGA: Recv ZDACR 28152
17-03-17 17:54:01.798 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:01.798 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:54:01.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:01.948 -07 000000482 INF: FPGA: Recv ZSGSRD 29349
17-03-17 17:54:01.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:54:01.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:01.958 -07 000000623 INF: FPGA: Recv ZSGSRD 29348
17-03-17 17:54:01.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:01.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:01.968 -07 000000482 INF: FPGA: Recv ZSGSRD 29354
17-03-17 17:54:01.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:01.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:01.978 -07 000000433 INF: FPGA: Recv ZSGSRD 29352
17-03-17 17:54:01.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:01.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:01.988 -07 000000482 INF: FPGA: Recv ZSGSRD 29351
17-03-17 17:54:01.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:01.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:01.998 -07 000000433 INF: FPGA: Recv ZSGSRD 29350
17-03-17 17:54:02.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:02.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:02.008 -07 000000627 INF: FPGA: Recv ZSGSRD 29351
17-03-17 17:54:02.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:02.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:02.018 -07 000000627 INF: FPGA: Recv ZSGSRD 29351
17-03-17 17:54:02.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:02.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:02.028 -07 000000623 INF: FPGA: Recv ZSGSRD 29352
17-03-17 17:54:02.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:02.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:02.038 -07 000000623 INF: FPGA: Recv ZSGSRD 29349
17-03-17 17:54:02.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:02.048 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:54:02.048 -07 000000486 INF: FPGA: Recv ZPIEZORD 24912
17-03-17 17:54:02.058 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:02.058 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.296 V. Piezo Error = -9.7 V.
17-03-17 17:54:02.058 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.9 um, Read 10 ADC samples: Avg = 29351 (-128.1 uncal um), Error = 0.8 uncal um, Median = 29351 (-128.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29348 (-128.1 uncal um), Max = 29354 (-128.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 17:54:02.058 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29351, posNoise = 3, negNoise = 3
17-03-17 17:54:02.058 -07 000000610 INF: Z Motor: After move to -0.128872, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:54:02.058 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 17:54:02.058 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:54:02.058 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:54:02.058 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:54:02.058 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:54:02.058 -07 000000409 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:54:02.058 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:54:02.058 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:54:02.058 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:54:02.058 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:54:02.058 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:54:02.058 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 17:54:02.058 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:54:02.058 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:54:02.058 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:54:02.068 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:54:02.068 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:54:02.068 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:54:02.068 -07 000000409 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 17:54:02.078 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 17:54:02.078 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 17:54:02.078 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28328 150\n [Camera]
17-03-17 17:54:02.278 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:54:02.668 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:54:02.668 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:54:02.668 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:54:02.668 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:54:02.668 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:54:02.668 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:54:02.678 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:54:02.678 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 17:54:02.678 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:54:02.678 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2315455648, 0x0, 418435064) start.
17-03-17 17:54:02.858 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28328 775
17-03-17 17:54:03.008 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:54:03.048 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2315455648, 0x0, 418435064) end. Duration was 368 ms.
17-03-17 17:54:03.048 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 369 ms.
17-03-17 17:54:03.048 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:54:03.048 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 374 ms.
17-03-17 17:54:03.048 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 17:54:03.048 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:54:03.048 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:54:03.058 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:54:03.058 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 17:54:03.058 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 17:54:03.198 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:54:03.198 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:54:03.198 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:54:03.198 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:54:03.198 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:54:03.208 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:54:03.208 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:54:03.208 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 17:54:03.208 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:54:03.208 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2350877912, 0x0, 391868352) start.
17-03-17 17:54:03.388 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:54:03.388 -07 000000541 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:54:03.388 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28328 150' command took 2 ms to send, 1307 ms to get response, and 1312 ms overall
17-03-17 17:54:03.398 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:54:03.398 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.5205078125, Z-Position -0.128880402583961. ------
17-03-17 17:54:03.398 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:54:03.398 -07 000000431 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13490 mm
17-03-17 17:54:03.398 -07 000000431 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:54:03.398 -07 000000409 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 17:54:03.398 -07 000000409 INF: Y Motor: Moving to 72.3626 mm, started at 71.5205 mm, delta = 0.8421 mm
17-03-17 17:54:03.398 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 29469, sync = True, waitForSettling = False)
17-03-17 17:54:03.398 -07 000000623 INF: Z Motor: Moving to -0.134900 mm, started at -0.128880 mm, distance = -6.02 um
17-03-17 17:54:03.398 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:54:03.408 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:54:03.408 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:54:03.408 -07 000000486 INF: FPGA: Recv YRDPOS 146474
17-03-17 17:54:03.418 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 17:54:03.418 -07 000000409 INF: Y Motor: Encoder = 146474 = motor step 114432.8 = 71.5205 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:54:03.418 -07 000000409 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:54:03.418 -07 000000409 INF: Y Motor: Moving 1347 steps-25
17-03-17 17:54:03.418 -07 000000623 INF: FPGA: Xmit ZDACW 29469\n [Z Motor]
17-03-17 17:54:03.418 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 17:54:03.428 -07 000000541 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:54:03.428 -07 000000623 INF: FPGA: 'ZDACW 29469' command took 1 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 17:54:03.438 -07 000000409 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:54:03.448 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:54:03.448 -07 000000486 INF: FPGA: Recv ZDACR 29469
17-03-17 17:54:03.458 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:54:03.458 -07 000000623 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-17 17:54:03.578 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 17:54:03.578 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 17:54:03.578 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:54:03.578 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2350877912, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 17:54:03.578 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 17:54:03.578 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:54:03.588 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:54:03.588 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 17:54:03.588 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 17:54:03.588 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 17:54:03.628 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:54:03.628 -07 000000541 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 17:54:03.808 -07 000000486 INF: FPGA: Recv YMVTILE
17-03-17 17:54:03.808 -07 000000409 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 17:54:03.848 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:54:03.848 -07 000000541 INF: FPGA: Recv YRDPOS 148174
17-03-17 17:54:03.858 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:03.858 -07 000000409 INF: Y Motor: Encoder = 148174 = motor step 115760.9 = 72.3506 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:54:03.858 -07 000000409 INF: Y Motor: Position error before settling (table move) = -25 encoder counts (-0.012 mm)
17-03-17 17:54:03.858 -07 000000409 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.842 mm, average velocity = 2.121 mm/sec
17-03-17 17:54:04.808 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:54:04.808 -07 000000478 INF: FPGA: Recv YRDPOS 148174
17-03-17 17:54:04.818 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:54:04.818 -07 000000409 INF: Y Motor: Encoder = 148174 = motor step 115760.9 = 72.3506 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:54:04.838 -07 000000409 INF: Y Motor: After move to 72.362610, error = -0.012024, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:54:04.838 -07 000000409 INF: Y Motor: Position error after settling (table move) = -25 encoder counts (-0.012 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:54:04.838 -07 000000409 INF: Y Motor: Moved to 72.3506 after 1433 ms (table move)
17-03-17 17:54:04.838 -07 000000431 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134900 mm (DAC = 29469)
17-03-17 17:54:04.838 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:04.838 -07 000000433 INF: FPGA: Recv ZSGSRD 30292
17-03-17 17:54:04.848 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:54:04.848 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:04.848 -07 000000478 INF: FPGA: Recv ZSGSRD 30292
17-03-17 17:54:04.858 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:04.858 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:04.858 -07 000000433 INF: FPGA: Recv ZSGSRD 30293
17-03-17 17:54:04.868 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:04.868 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:04.868 -07 000000433 INF: FPGA: Recv ZSGSRD 30287
17-03-17 17:54:04.878 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:04.878 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:04.878 -07 000000627 INF: FPGA: Recv ZSGSRD 30282
17-03-17 17:54:04.888 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:04.888 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:04.888 -07 000000478 INF: FPGA: Recv ZSGSRD 30293
17-03-17 17:54:04.898 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:04.898 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:04.898 -07 000000448 INF: FPGA: Recv ZSGSRD 30292
17-03-17 17:54:04.908 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:04.908 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:04.908 -07 000000486 INF: FPGA: Recv ZSGSRD 30289
17-03-17 17:54:04.918 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:04.918 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:04.918 -07 000000486 INF: FPGA: Recv ZSGSRD 30293
17-03-17 17:54:04.928 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:04.928 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:04.928 -07 000000486 INF: FPGA: Recv ZSGSRD 30290
17-03-17 17:54:04.938 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:04.938 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:54:04.938 -07 000000478 INF: FPGA: Recv ZPIEZORD 26186
17-03-17 17:54:04.948 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:04.948 -07 000000431 INF: Z Motor: Piezo is near 35.9 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.497 V. Piezo Error = -9.0 V.
17-03-17 17:54:04.948 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.9 um, Read 10 ADC samples: Avg = 30290 (-134.1 uncal um), Error = 0.8 uncal um, Median = 30292 (-134.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30282 (-134.1 uncal um), Max = 30293 (-134.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 17:54:04.948 -07 000000431 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30290, posNoise = 3, negNoise = 8
17-03-17 17:54:04.948 -07 000000431 INF: Z Motor: After move to -0.134900, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:54:04.948 -07 000000431 INF: Z Motor: Settle wait time = 1436 ms, measure time = 106 ms (allowed 150 ms), total time = 1542 ms
17-03-17 17:54:04.948 -07 000000431 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 17:54:04.998 -07 000000431 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1594 ms
17-03-17 17:54:04.998 -07 000000431 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:54:04.998 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:54:04.998 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:54:04.998 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:54:04.998 -07 000000409 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:54:04.998 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:54:04.998 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:54:05.008 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:54:05.008 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:54:05.008 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:54:05.008 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:54:05.018 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 17:54:05.018 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 17:54:05.018 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:54:05.058 -07 000000478 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:54:05.258 -07 000000448 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:54:05.258 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:54:05.268 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:54:05.268 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2239612688, 0x0, 559484976) start.
17-03-17 17:54:05.298 -07 000000482 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:54:05.298 -07 000000448 INF: FPGA: Recv CAMSNAP
17-03-17 17:54:05.298 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 17:54:05.378 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2239612688, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 17:54:05.378 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:54:05.378 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:54:05.378 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 17:54:05.398 -07 000000486 INF: Autofocus start
17-03-17 17:54:05.398 -07 000000486 INF: MeasureProfile start
17-03-17 17:54:05.408 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:54:05.408 -07 000000409 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:54:05.408 -07 000000486 INF: MeasureProfile done
17-03-17 17:54:05.408 -07 000000486 INF: X=16  Z correction [um]=0.0530179
17-03-17 17:54:05.408 -07 000000486 INF: Autofocus finished
17-03-17 17:54:05.418 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 17:54:05.418 -07 000000433 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:54:05.618 -07 000000409 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:54:05.618 -07 000000433 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:54:05.618 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.3505859375, Z-position -0.134912737785074. ----------
17-03-17 17:54:05.618 -07 000000610 INF: Cycle	6	Tile	16	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:54:05.628 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27993, sync = True, waitForSettling = True)
17-03-17 17:54:05.628 -07 000000610 INF: Z Motor: Moving to -0.128144 mm, started at -0.134913 mm, distance = 6.77 um
17-03-17 17:54:05.628 -07 000000610 INF: FPGA: Xmit ZDACW 27993\n [Z Motor]
17-03-17 17:54:05.628 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 17:54:05.638 -07 000000610 INF: FPGA: 'ZDACW 27993' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:05.638 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:54:05.638 -07 000000482 INF: FPGA: Recv ZDACR 27993
17-03-17 17:54:05.648 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:05.648 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:54:05.718 -07 000000409 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 6, FrontChillerTemperature: 3.921247,
17-03-17 17:54:05.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:05.798 -07 000000433 INF: FPGA: Recv ZSGSRD 29236
17-03-17 17:54:05.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:54:05.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:05.808 -07 000000478 INF: FPGA: Recv ZSGSRD 29237
17-03-17 17:54:05.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:05.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:05.818 -07 000000409 INF: FPGA: Recv ZSGSRD 29235
17-03-17 17:54:05.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:05.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:05.828 -07 000000482 INF: FPGA: Recv ZSGSRD 29239
17-03-17 17:54:05.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:05.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:05.838 -07 000000409 INF: FPGA: Recv ZSGSRD 29238
17-03-17 17:54:05.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:05.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:05.848 -07 000000482 INF: FPGA: Recv ZSGSRD 29237
17-03-17 17:54:05.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:05.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:05.858 -07 000000409 INF: FPGA: Recv ZSGSRD 29240
17-03-17 17:54:05.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:05.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:05.868 -07 000000409 INF: FPGA: Recv ZSGSRD 29237
17-03-17 17:54:05.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:05.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:05.878 -07 000000482 INF: FPGA: Recv ZSGSRD 29237
17-03-17 17:54:05.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:05.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:05.888 -07 000000482 INF: FPGA: Recv ZSGSRD 29233
17-03-17 17:54:05.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:05.898 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:54:05.898 -07 000000482 INF: FPGA: Recv ZPIEZORD 24798
17-03-17 17:54:05.908 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:05.908 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.271 V. Piezo Error = -9.7 V.
17-03-17 17:54:05.908 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.1 um, Read 10 ADC samples: Avg = 29237 (-127.4 uncal um), Error = 0.8 uncal um, Median = 29237 (-127.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29233 (-127.3 uncal um), Max = 29240 (-127.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:54:05.908 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29237, posNoise = 3, negNoise = 4
17-03-17 17:54:05.908 -07 000000610 INF: Z Motor: After move to -0.128144, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:54:05.908 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 17:54:05.908 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:54:05.908 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:54:05.908 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:54:05.908 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:54:05.908 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:54:05.908 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:54:05.908 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:54:05.908 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:54:05.908 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:54:05.908 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:54:05.908 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:54:05.908 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:54:05.908 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:54:05.908 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:54:05.908 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:54:05.908 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:54:05.918 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:54:05.918 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 17:54:05.918 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 17:54:05.918 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:54:05.928 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28170 150\n [Camera]
17-03-17 17:54:06.128 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:54:06.518 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:54:06.518 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:54:06.518 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:54:06.518 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:54:06.518 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 17:54:06.518 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:54:06.518 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:54:06.518 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:54:06.518 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:54:06.518 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 17:54:06.538 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:54:06.538 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 5. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=54, R2=62, Total=116. Warn if over 250 bubbles per interval.
17-03-17 17:54:06.708 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28170 775
17-03-17 17:54:06.858 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:54:06.898 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 17:54:06.898 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 17:54:06.898 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:54:06.898 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 17:54:06.898 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 17:54:06.898 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:54:06.898 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:54:06.898 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 17:54:06.898 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:54:06.908 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 17:54:07.048 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:54:07.048 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:54:07.048 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:54:07.048 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:54:07.048 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 17:54:07.058 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:54:07.058 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:54:07.058 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:54:07.058 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:54:07.058 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 17:54:07.238 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:54:07.238 -07 000000431 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:54:07.358 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28170 150' command took 2 ms to send, 1423 ms to get response, and 1431 ms overall
17-03-17 17:54:07.358 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:54:07.358 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.3505859375, Z-Position -0.1281480423998. ------
17-03-17 17:54:07.368 -07 000000431 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:54:07.368 -07 000000409 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13473 mm
17-03-17 17:54:07.368 -07 000000409 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:54:07.368 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:54:07.368 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 17:54:07.368 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 29432, sync = True, waitForSettling = False)
17-03-17 17:54:07.368 -07 000000627 INF: Z Motor: Moving to -0.134731 mm, started at -0.128148 mm, distance = -6.58 um
17-03-17 17:54:07.368 -07 000000541 INF: Y Motor: Moving to 73.1926 mm, started at 72.3506 mm, delta = 0.8420 mm
17-03-17 17:54:07.378 -07 000000431 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:07.378 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:54:07.378 -07 000000478 INF: FPGA: Recv YRDPOS 148174
17-03-17 17:54:07.388 -07 000000627 INF: FPGA: Xmit ZDACW 29432\n [Z Motor]
17-03-17 17:54:07.388 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 17:54:07.388 -07 000000541 INF: Y Motor: Encoder = 148174 = motor step 115760.9 = 72.3506 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:54:07.388 -07 000000541 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:54:07.388 -07 000000541 INF: Y Motor: Moving 1347 steps-25
17-03-17 17:54:07.388 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 17:54:07.398 -07 000000627 INF: FPGA: 'ZDACW 29432' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 17:54:07.398 -07 000000431 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:54:07.408 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:54:07.418 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:54:07.418 -07 000000478 INF: FPGA: Recv ZDACR 29432
17-03-17 17:54:07.428 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:54:07.428 -07 000000627 INF: Z Motor: MoveAbsStepped took 56 ms (did NOT wait for settling yet))
17-03-17 17:54:07.438 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 17:54:07.438 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 17:54:07.438 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 17:54:07.438 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:54:07.438 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 17:54:07.438 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:54:07.438 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:54:07.448 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 17:54:07.448 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 17:54:07.448 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 17:54:07.598 -07 000000576 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:54:07.598 -07 000000431 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 17:54:07.778 -07 000000433 INF: FPGA: Recv YMVTILE
17-03-17 17:54:07.778 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 17:54:07.808 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:54:07.818 -07 000000486 INF: FPGA: Recv YRDPOS 149867
17-03-17 17:54:07.818 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 17:54:07.818 -07 000000541 INF: Y Motor: Encoder = 149867 = motor step 117083.6 = 73.1772 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:54:07.818 -07 000000541 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 17:54:07.818 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.842 mm, average velocity = 2.121 mm/sec
17-03-17 17:54:08.768 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:54:08.768 -07 000000433 INF: FPGA: Recv YRDPOS 149867
17-03-17 17:54:08.778 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:54:08.778 -07 000000541 INF: Y Motor: Encoder = 149867 = motor step 117083.6 = 73.1772 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:54:08.798 -07 000000541 INF: Y Motor: After move to 73.192604, error = -0.015358, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:54:08.798 -07 000000541 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:54:08.798 -07 000000541 INF: Y Motor: Moved to 73.1772 after 1427 ms (table move)
17-03-17 17:54:08.798 -07 000000409 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134731 mm (DAC = 29432)
17-03-17 17:54:08.798 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:08.798 -07 000000541 INF: FPGA: Recv ZSGSRD 30262
17-03-17 17:54:08.808 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:54:08.808 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:08.808 -07 000000478 INF: FPGA: Recv ZSGSRD 30259
17-03-17 17:54:08.818 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:08.818 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:08.818 -07 000000478 INF: FPGA: Recv ZSGSRD 30257
17-03-17 17:54:08.828 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:08.828 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:08.828 -07 000000541 INF: FPGA: Recv ZSGSRD 30253
17-03-17 17:54:08.838 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:08.838 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:08.838 -07 000000433 INF: FPGA: Recv ZSGSRD 30259
17-03-17 17:54:08.848 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:08.848 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:08.848 -07 000000448 INF: FPGA: Recv ZSGSRD 30267
17-03-17 17:54:08.858 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:08.858 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:08.858 -07 000000448 INF: FPGA: Recv ZSGSRD 30273
17-03-17 17:54:08.868 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:08.868 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:08.868 -07 000000448 INF: FPGA: Recv ZSGSRD 30267
17-03-17 17:54:08.878 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:08.878 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:08.878 -07 000000551 INF: FPGA: Recv ZSGSRD 30264
17-03-17 17:54:08.888 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:08.888 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:08.888 -07 000000551 INF: FPGA: Recv ZSGSRD 30259
17-03-17 17:54:08.898 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:08.898 -07 000000409 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:54:08.898 -07 000000551 INF: FPGA: Recv ZPIEZORD 26144
17-03-17 17:54:08.908 -07 000000409 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:08.908 -07 000000409 INF: Z Motor: Piezo is near 35.9 V (nominally 0 to 100 V), expect near 44.9 V, since DAC is at 4.491 V. Piezo Error = -9.1 V.
17-03-17 17:54:08.908 -07 000000409 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.7 um, Read 10 ADC samples: Avg = 30262 (-133.9 uncal um), Error = 0.8 uncal um, Median = 30260 (-133.9 uncal um), StdDev = 6 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 30253 (-133.9 uncal um), Max = 30273 (-134.0 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 17:54:08.908 -07 000000409 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30262, posNoise = 11, negNoise = 9
17-03-17 17:54:08.908 -07 000000409 INF: Z Motor: After move to -0.134731, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:54:08.908 -07 000000409 INF: Z Motor: Settle wait time = 1429 ms, measure time = 107 ms (allowed 150 ms), total time = 1536 ms
17-03-17 17:54:08.908 -07 000000409 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 17:54:08.958 -07 000000409 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1589 ms
17-03-17 17:54:08.958 -07 000000409 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:54:08.958 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:54:08.958 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:54:08.958 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:54:08.958 -07 000000431 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:54:08.958 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:54:08.958 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:54:08.958 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:54:08.958 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:54:08.968 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:54:08.968 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:54:08.978 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 17:54:08.978 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 17:54:08.978 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:54:09.028 -07 000000623 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:54:09.228 -07 000000431 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:54:09.228 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:54:09.228 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:54:09.228 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 17:54:09.268 -07 000000482 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:54:09.268 -07 000000623 INF: FPGA: Recv CAMSNAP
17-03-17 17:54:09.268 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 17:54:09.348 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 123 ms.
17-03-17 17:54:09.348 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:54:09.348 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:54:09.348 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 126 ms.
17-03-17 17:54:09.368 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:54:09.368 -07 000000576 INF: Autofocus start
17-03-17 17:54:09.368 -07 000000576 INF: MeasureProfile start
17-03-17 17:54:09.368 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:54:09.378 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:54:09.378 -07 000000551 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:54:09.378 -07 000000576 INF: MeasureProfile done
17-03-17 17:54:09.378 -07 000000576 INF: X=16  Z correction [um]=0.0530179
17-03-17 17:54:09.378 -07 000000576 INF: Autofocus finished
17-03-17 17:54:09.578 -07 000000541 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:54:09.578 -07 000000551 INF: FPGA: 'FOCMRRIMG' command took 1 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:54:09.578 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17724609375, Z-position -0.134732859845105. ----------
17-03-17 17:54:09.578 -07 000000610 INF: Cycle	6	Tile	17	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:54:09.588 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27956, sync = True, waitForSettling = True)
17-03-17 17:54:09.588 -07 000000610 INF: Z Motor: Moving to -0.127974 mm, started at -0.134733 mm, distance = 6.76 um
17-03-17 17:54:09.588 -07 000000610 INF: FPGA: Xmit ZDACW 27956\n [Z Motor]
17-03-17 17:54:09.588 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 17:54:09.598 -07 000000610 INF: FPGA: 'ZDACW 27956' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:09.598 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:54:09.598 -07 000000431 INF: FPGA: Recv ZDACR 27956
17-03-17 17:54:09.608 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:09.608 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:54:09.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:09.758 -07 000000576 INF: FPGA: Recv ZSGSRD 29205
17-03-17 17:54:09.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:54:09.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:09.768 -07 000000482 INF: FPGA: Recv ZSGSRD 29215
17-03-17 17:54:09.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:09.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:09.778 -07 000000627 INF: FPGA: Recv ZSGSRD 29207
17-03-17 17:54:09.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:09.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:09.788 -07 000000482 INF: FPGA: Recv ZSGSRD 29213
17-03-17 17:54:09.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:09.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:09.798 -07 000000576 INF: FPGA: Recv ZSGSRD 29211
17-03-17 17:54:09.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:09.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:09.808 -07 000000482 INF: FPGA: Recv ZSGSRD 29211
17-03-17 17:54:09.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:09.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:09.818 -07 000000627 INF: FPGA: Recv ZSGSRD 29217
17-03-17 17:54:09.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:09.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:09.828 -07 000000551 INF: FPGA: Recv ZSGSRD 29212
17-03-17 17:54:09.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:09.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:09.838 -07 000000576 INF: FPGA: Recv ZSGSRD 29211
17-03-17 17:54:09.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:09.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:09.848 -07 000000551 INF: FPGA: Recv ZSGSRD 29216
17-03-17 17:54:09.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:09.858 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:54:09.858 -07 000000482 INF: FPGA: Recv ZPIEZORD 24792
17-03-17 17:54:09.868 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:09.868 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.266 V. Piezo Error = -9.7 V.
17-03-17 17:54:09.868 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.0 um, Read 10 ADC samples: Avg = 29212 (-127.2 uncal um), Error = 0.8 uncal um, Median = 29212 (-127.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29205 (-127.2 uncal um), Max = 29217 (-127.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 17:54:09.868 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29212, posNoise = 5, negNoise = 7
17-03-17 17:54:09.868 -07 000000610 INF: Z Motor: After move to -0.127974, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:54:09.868 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 17:54:09.868 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:54:09.868 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:54:09.868 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:54:09.868 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:54:09.868 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:54:09.868 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:54:09.868 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:54:09.868 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:54:09.868 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:54:09.868 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:54:09.868 -07 000000431 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 17:54:09.868 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:54:09.868 -07 000000431 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 17:54:09.878 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:54:09.878 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:54:09.878 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:54:09.888 -07 000000431 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 17:54:09.888 -07 000000431 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 17:54:09.888 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 17:54:09.888 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 17:54:09.888 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28132 150\n [Camera]
17-03-17 17:54:10.088 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:54:10.478 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:54:10.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:54:10.478 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:54:10.478 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:54:10.478 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:54:10.478 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:54:10.478 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:54:10.478 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 17:54:10.488 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:54:10.488 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 17:54:10.668 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28132 775
17-03-17 17:54:10.818 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:54:10.858 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 17:54:10.858 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 17:54:10.858 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:54:10.858 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 17:54:10.858 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-17 17:54:10.858 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:54:10.858 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:54:10.858 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 17:54:10.858 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:54:10.868 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 17:54:11.008 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:54:11.008 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:54:11.008 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:54:11.008 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:54:11.008 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:54:11.008 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:54:11.018 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:54:11.018 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 17:54:11.138 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:54:11.138 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) start.
17-03-17 17:54:11.148 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 6, FrontChillerTemperature: 3.922606,
17-03-17 17:54:11.198 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:54:11.198 -07 000000551 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:54:11.198 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28132 150' command took 2 ms to send, 1306 ms to get response, and 1312 ms overall
17-03-17 17:54:11.198 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:54:11.198 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17724609375, Z-Position -0.127987437096256. ------
17-03-17 17:54:11.208 -07 000000478 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13434 mm
17-03-17 17:54:11.208 -07 000000478 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:54:11.208 -07 000000409 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:54:11.208 -07 000000431 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 17:54:11.208 -07 000000431 INF: Y Motor: Moving to 74.0226 mm, started at 73.1772 mm, delta = 0.8454 mm
17-03-17 17:54:11.208 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:54:11.208 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 29346, sync = True, waitForSettling = False)
17-03-17 17:54:11.208 -07 000000486 INF: Z Motor: Moving to -0.134337 mm, started at -0.127987 mm, distance = -6.35 um
17-03-17 17:54:11.218 -07 000000409 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:54:11.218 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:54:11.218 -07 000000448 INF: FPGA: Recv YRDPOS 149867
17-03-17 17:54:11.228 -07 000000486 INF: FPGA: Xmit ZDACW 29346\n [Z Motor]
17-03-17 17:54:11.228 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 17:54:11.228 -07 000000431 INF: Y Motor: Encoder = 149867 = motor step 117083.6 = 73.1772 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:54:11.228 -07 000000431 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:54:11.228 -07 000000431 INF: Y Motor: Moving 1353 steps-31
17-03-17 17:54:11.228 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 17:54:11.238 -07 000000409 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:54:11.238 -07 000000486 INF: FPGA: 'ZDACW 29346' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 17:54:11.248 -07 000000431 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:54:11.258 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:54:11.258 -07 000000448 INF: FPGA: Recv ZDACR 29346
17-03-17 17:54:11.268 -07 000000486 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:54:11.268 -07 000000486 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-17 17:54:11.398 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 17:54:11.398 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 17:54:11.398 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:54:11.398 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:54:11.398 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 17:54:11.438 -07 000000433 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:54:11.438 -07 000000409 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 17:54:11.508 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2298580584, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 17:54:11.508 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 17:54:11.508 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:54:11.508 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:54:11.518 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 507 ms.
17-03-17 17:54:11.538 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:54:11.538 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 5. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=54, R2=62, Total=116. Warn if over 250 bubbles per interval.
17-03-17 17:54:11.618 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-17 17:54:11.618 -07 000000431 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 17:54:11.648 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:54:11.648 -07 000000448 INF: FPGA: Recv YRDPOS 151571
17-03-17 17:54:11.658 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:54:11.658 -07 000000431 INF: Y Motor: Encoder = 151571 = motor step 118414.8 = 74.0093 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:54:11.658 -07 000000431 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 17:54:11.658 -07 000000431 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.845 mm, average velocity = 2.140 mm/sec
17-03-17 17:54:12.608 -07 000000431 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:54:12.608 -07 000000482 INF: FPGA: Recv YRDPOS 151571
17-03-17 17:54:12.618 -07 000000431 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:54:12.618 -07 000000431 INF: Y Motor: Encoder = 151571 = motor step 118414.8 = 74.0093 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:54:12.628 -07 000000431 INF: Y Motor: After move to 74.022606, error = -0.013329, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:54:12.628 -07 000000431 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 17:54:12.628 -07 000000431 INF: Y Motor: Moved to 74.0093 after 1420 ms (table move)
17-03-17 17:54:12.628 -07 000000478 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134337 mm (DAC = 29346)
17-03-17 17:54:12.628 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:12.638 -07 000000448 INF: FPGA: Recv ZSGSRD 30206
17-03-17 17:54:12.638 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 17:54:12.638 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:12.638 -07 000000576 INF: FPGA: Recv ZSGSRD 30203
17-03-17 17:54:12.648 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 17:54:12.648 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:12.648 -07 000000482 INF: FPGA: Recv ZSGSRD 30204
17-03-17 17:54:12.658 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:12.658 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:12.658 -07 000000576 INF: FPGA: Recv ZSGSRD 30201
17-03-17 17:54:12.668 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:12.668 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:12.668 -07 000000551 INF: FPGA: Recv ZSGSRD 30191
17-03-17 17:54:12.678 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:12.678 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:12.678 -07 000000433 INF: FPGA: Recv ZSGSRD 30202
17-03-17 17:54:12.688 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:12.688 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:12.688 -07 000000626 INF: FPGA: Recv ZSGSRD 30205
17-03-17 17:54:12.698 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:12.698 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:12.698 -07 000000433 INF: FPGA: Recv ZSGSRD 30202
17-03-17 17:54:12.708 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:12.708 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:12.708 -07 000000623 INF: FPGA: Recv ZSGSRD 30203
17-03-17 17:54:12.718 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:12.718 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:12.718 -07 000000626 INF: FPGA: Recv ZSGSRD 30203
17-03-17 17:54:12.728 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:12.728 -07 000000478 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:54:12.728 -07 000000551 INF: FPGA: Recv ZPIEZORD 26087
17-03-17 17:54:12.738 -07 000000478 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:12.738 -07 000000478 INF: Z Motor: Piezo is near 35.7 V (nominally 0 to 100 V), expect near 44.8 V, since DAC is at 4.478 V. Piezo Error = -9.1 V.
17-03-17 17:54:12.738 -07 000000478 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.3 um, Read 10 ADC samples: Avg = 30202 (-133.6 uncal um), Error = 0.8 uncal um, Median = 30203 (-133.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30191 (-133.5 uncal um), Max = 30206 (-133.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 17:54:12.738 -07 000000478 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30202, posNoise = 4, negNoise = 11
17-03-17 17:54:12.738 -07 000000478 INF: Z Motor: After move to -0.134337, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:54:12.738 -07 000000478 INF: Z Motor: Settle wait time = 1422 ms, measure time = 103 ms (allowed 150 ms), total time = 1525 ms
17-03-17 17:54:12.738 -07 000000478 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 17:54:12.788 -07 000000478 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1579 ms
17-03-17 17:54:12.788 -07 000000478 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:54:12.788 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:54:12.788 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:54:12.788 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:54:12.788 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:54:12.788 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:54:12.788 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:54:12.788 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:54:12.788 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:54:12.798 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 17:54:12.798 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:54:12.808 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 17:54:12.808 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 17:54:12.808 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:54:12.858 -07 000000478 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:54:13.058 -07 000000448 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:54:13.058 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:54:13.058 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:54:13.058 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 17:54:13.098 -07 000000431 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:54:13.098 -07 000000482 INF: FPGA: Recv CAMSNAP
17-03-17 17:54:13.098 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 274 ms to get response, and 285 ms overall
17-03-17 17:54:13.188 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 17:54:13.188 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:54:13.188 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:54:13.188 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 17:54:13.198 -07 000000623 INF: Autofocus start
17-03-17 17:54:13.198 -07 000000623 INF: MeasureProfile start
17-03-17 17:54:13.198 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:54:13.198 -07 000000626 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:54:13.208 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 17:54:13.208 -07 000000448 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:54:13.208 -07 000000623 INF: MeasureProfile done
17-03-17 17:54:13.208 -07 000000623 INF: X=0  Z correction [um]=-0.02394831
17-03-17 17:54:13.208 -07 000000623 INF: Autofocus finished
17-03-17 17:54:13.408 -07 000000459 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:54:13.408 -07 000000448 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 198 ms to get response, and 202 ms overall
17-03-17 17:54:13.418 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00927734375, Z-position -0.134347407116599. ----------
17-03-17 17:54:13.418 -07 000000610 INF: Cycle	6	Tile	18	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:54:13.418 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27854, sync = True, waitForSettling = True)
17-03-17 17:54:13.418 -07 000000610 INF: Z Motor: Moving to -0.127507 mm, started at -0.134347 mm, distance = 6.84 um
17-03-17 17:54:13.418 -07 000000610 INF: FPGA: Xmit ZDACW 27854\n [Z Motor]
17-03-17 17:54:13.428 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 17:54:13.428 -07 000000610 INF: FPGA: 'ZDACW 27854' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 17:54:13.428 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:54:13.428 -07 000000433 INF: FPGA: Recv ZDACR 27854
17-03-17 17:54:13.438 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:13.438 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:54:13.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:13.588 -07 000000431 INF: FPGA: Recv ZSGSRD 29140
17-03-17 17:54:13.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:54:13.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:13.598 -07 000000623 INF: FPGA: Recv ZSGSRD 29142
17-03-17 17:54:13.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:13.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:13.608 -07 000000459 INF: FPGA: Recv ZSGSRD 29135
17-03-17 17:54:13.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:13.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:13.618 -07 000000627 INF: FPGA: Recv ZSGSRD 29138
17-03-17 17:54:13.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:13.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:13.628 -07 000000576 INF: FPGA: Recv ZSGSRD 29143
17-03-17 17:54:13.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:13.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:13.638 -07 000000541 INF: FPGA: Recv ZSGSRD 29135
17-03-17 17:54:13.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:13.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:13.648 -07 000000486 INF: FPGA: Recv ZSGSRD 29140
17-03-17 17:54:13.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:13.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:13.658 -07 000000551 INF: FPGA: Recv ZSGSRD 29138
17-03-17 17:54:13.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:13.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:13.668 -07 000000431 INF: FPGA: Recv ZSGSRD 29140
17-03-17 17:54:13.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:13.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:13.678 -07 000000409 INF: FPGA: Recv ZSGSRD 29143
17-03-17 17:54:13.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:13.688 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:54:13.688 -07 000000486 INF: FPGA: Recv ZPIEZORD 24700
17-03-17 17:54:13.698 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:13.698 -07 000000610 INF: Z Motor: Piezo is near 32.8 V (nominally 0 to 100 V), expect near 42.5 V, since DAC is at 4.250 V. Piezo Error = -9.7 V.
17-03-17 17:54:13.698 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.5 um, Read 10 ADC samples: Avg = 29139 (-126.7 uncal um), Error = 0.8 uncal um, Median = 29140 (-126.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29135 (-126.7 uncal um), Max = 29143 (-126.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 17:54:13.698 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29139, posNoise = 4, negNoise = 4
17-03-17 17:54:13.698 -07 000000610 INF: Z Motor: After move to -0.127507, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:54:13.698 -07 000000610 INF: Z Motor: MoveAbsStepped took 273 ms)
17-03-17 17:54:13.698 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:54:13.698 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:54:13.698 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:54:13.698 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:54:13.698 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:54:13.698 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:54:13.698 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:54:13.698 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:54:13.698 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 17:54:13.698 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:54:13.698 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 17:54:13.698 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:54:13.708 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 17:54:13.708 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:54:13.708 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:54:13.708 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:54:13.718 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 17:54:13.718 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 17:54:13.718 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 17:54:13.718 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 17:54:13.718 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 28031 150\n [Camera]
17-03-17 17:54:13.918 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:54:14.308 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 582
17-03-17 17:54:14.308 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 582
17-03-17 17:54:14.308 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:54:14.308 -07 000000626 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 582
17-03-17 17:54:14.308 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 582
17-03-17 17:54:14.308 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:54:14.308 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:54:14.318 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:54:14.318 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 17:54:14.318 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 17:54:14.498 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28031 775
17-03-17 17:54:14.648 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:54:14.688 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 17:54:14.688 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 17:54:14.688 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:54:14.688 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 17:54:14.688 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 17:54:14.688 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:54:14.698 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:54:14.698 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:54:14.698 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 17:54:14.698 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 17:54:14.838 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:54:14.838 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:54:14.838 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:54:14.838 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:54:14.838 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:54:14.838 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:54:14.838 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:54:14.838 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 17:54:14.848 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:54:14.848 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2350877912, 0x0, 391868352) start.
17-03-17 17:54:15.028 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP 1305
17-03-17 17:54:15.028 -07 000000623 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:54:15.028 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 28031 150' command took 2 ms to send, 1307 ms to get response, and 1312 ms overall
17-03-17 17:54:15.028 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 17:54:15.038 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00927734375, Z-Position -0.127518469609908. ------
17-03-17 17:54:15.038 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:54:15.038 -07 000000431 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13380 mm
17-03-17 17:54:15.038 -07 000000431 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 17:54:15.038 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:54:15.038 -07 000000409 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 17:54:15.048 -07 000000409 INF: Y Motor: Moving to 74.8526 mm, started at 74.0093 mm, delta = 0.8433 mm
17-03-17 17:54:15.048 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:54:15.048 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 17:54:15.048 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 29228, sync = True, waitForSettling = False)
17-03-17 17:54:15.048 -07 000000551 INF: Z Motor: Moving to -0.133797 mm, started at -0.127518 mm, distance = -6.28 um
17-03-17 17:54:15.048 -07 000000459 INF: FPGA: Recv YRDPOS 151572
17-03-17 17:54:15.058 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:15.058 -07 000000409 INF: Y Motor: Encoder = 151572 = motor step 118415.6 = 74.0098 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:54:15.058 -07 000000551 INF: FPGA: Xmit ZDACW 29228\n [Z Motor]
17-03-17 17:54:15.058 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 17:54:15.058 -07 000000409 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 17:54:15.058 -07 000000409 INF: Y Motor: Moving 1349 steps-27
17-03-17 17:54:15.068 -07 000000478 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 17:54:15.068 -07 000000551 INF: FPGA: 'ZDACW 29228' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 17:54:15.078 -07 000000409 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 17:54:15.088 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:54:15.088 -07 000000475 INF: FPGA: Recv ZDACR 29228
17-03-17 17:54:15.098 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:54:15.098 -07 000000551 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 17:54:15.218 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2350877912, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 17:54:15.218 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 17:54:15.218 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:54:15.228 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 17:54:15.228 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 17:54:15.228 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:54:15.228 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 17:54:15.228 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 17:54:15.228 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 17:54:15.238 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 17:54:15.268 -07 000000569 INF: FPGA: Recv FOCMRRFOC
17-03-17 17:54:15.268 -07 000000478 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-17 17:54:15.458 -07 000000541 INF: FPGA: Recv YMVTILE
17-03-17 17:54:15.458 -07 000000409 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 395 ms overall
17-03-17 17:54:15.478 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:54:15.478 -07 000000433 INF: FPGA: Recv YRDPOS 153258
17-03-17 17:54:15.488 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:15.488 -07 000000409 INF: Y Motor: Encoder = 153258 = motor step 119732.8 = 74.8330 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:54:15.488 -07 000000409 INF: Y Motor: Position error before settling (table move) = -40 encoder counts (-0.020 mm)
17-03-17 17:54:15.488 -07 000000409 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.843 mm, average velocity = 2.135 mm/sec
17-03-17 17:54:16.438 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 17:54:16.438 -07 000000480 INF: FPGA: Recv YRDPOS 153259
17-03-17 17:54:16.448 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:54:16.448 -07 000000409 INF: Y Motor: Encoder = 153259 = motor step 119733.6 = 74.8335 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 17:54:16.458 -07 000000409 INF: Y Motor: After move to 74.852608, error = -0.019112, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 17:54:16.458 -07 000000409 INF: Y Motor: Position error after settling (table move) = -39 encoder counts (-0.019 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 17:54:16.458 -07 000000409 INF: Y Motor: Moved to 74.8335 after 1414 ms (table move)
17-03-17 17:54:16.468 -07 000000431 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133797 mm (DAC = 29228)
17-03-17 17:54:16.468 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:16.468 -07 000000448 INF: FPGA: Recv ZSGSRD 30126
17-03-17 17:54:16.478 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:16.478 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:16.478 -07 000000541 INF: FPGA: Recv ZSGSRD 30115
17-03-17 17:54:16.488 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:16.488 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:16.488 -07 000000433 INF: FPGA: Recv ZSGSRD 30113
17-03-17 17:54:16.498 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:16.498 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:16.498 -07 000000569 INF: FPGA: Recv ZSGSRD 30115
17-03-17 17:54:16.508 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:16.518 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:16.518 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 6, FrontChillerTemperature: 3.945808,
17-03-17 17:54:16.518 -07 000000593 INF: FPGA: Recv ZSGSRD 30119
17-03-17 17:54:16.528 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:54:16.538 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 17:54:16.538 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 5. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=9, R2=9, Total=18. Bubbles this run: R1=54, R2=62, Total=116. Warn if over 250 bubbles per interval.
17-03-17 17:54:16.548 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:16.548 -07 000000593 INF: FPGA: Recv ZSGSRD 30118
17-03-17 17:54:16.558 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:54:16.578 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:16.578 -07 000000627 INF: FPGA: Recv ZSGSRD 30120
17-03-17 17:54:16.588 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 17:54:16.588 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:16.588 -07 000000627 INF: FPGA: Recv ZSGSRD 30113
17-03-17 17:54:16.598 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:16.608 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:16.608 -07 000000475 INF: FPGA: Recv ZSGSRD 30117
17-03-17 17:54:16.618 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 17:54:16.618 -07 000000431 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:16.618 -07 000000475 INF: FPGA: Recv ZSGSRD 30128
17-03-17 17:54:16.628 -07 000000431 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:16.628 -07 000000431 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:54:16.628 -07 000000475 INF: FPGA: Recv ZPIEZORD 25941
17-03-17 17:54:16.638 -07 000000431 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:16.638 -07 000000431 INF: Z Motor: Piezo is near 35.4 V (nominally 0 to 100 V), expect near 44.6 V, since DAC is at 4.460 V. Piezo Error = -9.2 V.
17-03-17 17:54:16.638 -07 000000431 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.8 um, Read 10 ADC samples: Avg = 30118 (-133.0 uncal um), Error = 0.8 uncal um, Median = 30118 (-133.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30113 (-133.0 uncal um), Max = 30128 (-133.1 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 17:54:16.638 -07 000000431 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30118, posNoise = 10, negNoise = 5
17-03-17 17:54:16.638 -07 000000431 INF: Z Motor: After move to -0.133797, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:54:16.638 -07 000000431 INF: Z Motor: Settle wait time = 1419 ms, measure time = 170 ms (allowed 150 ms), total time = 1589 ms
17-03-17 17:54:16.638 -07 000000431 INF: Z Motor: Warning: Actual position measuring time = 170 ms, longer than max expected time of 150 ms
17-03-17 17:54:16.638 -07 000000431 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms
17-03-17 17:54:16.638 -07 000000431 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 17:54:16.638 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:54:16.638 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:54:16.638 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:54:16.638 -07 000000476 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:54:16.638 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 17:54:16.638 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:54:16.648 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:54:16.648 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 17:54:16.648 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 17:54:16.648 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 17:54:16.658 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 17:54:16.658 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 17:54:16.658 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 17:54:16.708 -07 000000626 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 17:54:16.898 -07 000000433 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 17:54:16.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 17:54:16.908 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 17:54:16.908 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2239612688, 0x0, 559484976) start.
17-03-17 17:54:16.938 -07 000000551 INF: FPGA: Recv @CAMSNAP 280
17-03-17 17:54:16.948 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 17:54:16.948 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 17:54:17.028 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2239612688, 0x0, 559484976) end. Duration was 118 ms.
17-03-17 17:54:17.028 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:54:17.028 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 17:54:17.028 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-17 17:54:17.048 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 17:54:17.048 -07 000000433 INF: Autofocus start
17-03-17 17:54:17.048 -07 000000433 INF: MeasureProfile start
17-03-17 17:54:17.048 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 17:54:17.058 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:54:17.058 -07 000000551 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 17:54:17.068 -07 000000433 INF: MeasureProfile done
17-03-17 17:54:17.068 -07 000000433 INF: X=0  Z correction [um]=-0.02394831
17-03-17 17:54:17.068 -07 000000433 INF: Autofocus finished
17-03-17 17:54:17.258 -07 000000475 INF: FPGA: Recv FOCMRRIMG
17-03-17 17:54:17.258 -07 000000551 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 17:54:17.268 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83349609375, Z-position -0.133807773296692. ----------
17-03-17 17:54:17.268 -07 000000610 INF: Cycle	6	Tile	19	Exposure Settings		A	390	G	188	T	188	C	390
17-03-17 17:54:17.268 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27735, sync = True, waitForSettling = True)
17-03-17 17:54:17.268 -07 000000610 INF: Z Motor: Moving to -0.126963 mm, started at -0.133808 mm, distance = 6.85 um
17-03-17 17:54:17.268 -07 000000610 INF: FPGA: Xmit ZDACW 27735\n [Z Motor]
17-03-17 17:54:17.268 -07 000000409 INF: FPGA: Recv ZDACW
17-03-17 17:54:17.278 -07 000000610 INF: FPGA: 'ZDACW 27735' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 17:54:17.278 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 17:54:17.278 -07 000000433 INF: FPGA: Recv ZDACR 27735
17-03-17 17:54:17.288 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:17.288 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 17:54:17.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:17.438 -07 000000475 INF: FPGA: Recv ZSGSRD 29044
17-03-17 17:54:17.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 17:54:17.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:17.448 -07 000000626 INF: FPGA: Recv ZSGSRD 29053
17-03-17 17:54:17.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:17.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:17.458 -07 000000475 INF: FPGA: Recv ZSGSRD 29056
17-03-17 17:54:17.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:17.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:17.468 -07 000000626 INF: FPGA: Recv ZSGSRD 29049
17-03-17 17:54:17.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:17.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:17.478 -07 000000627 INF: FPGA: Recv ZSGSRD 29060
17-03-17 17:54:17.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:17.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:17.488 -07 000000475 INF: FPGA: Recv ZSGSRD 29053
17-03-17 17:54:17.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:17.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:17.498 -07 000000627 INF: FPGA: Recv ZSGSRD 29057
17-03-17 17:54:17.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:17.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:17.508 -07 000000409 INF: FPGA: Recv ZSGSRD 29058
17-03-17 17:54:17.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:17.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:17.518 -07 000000475 INF: FPGA: Recv ZSGSRD 29050
17-03-17 17:54:17.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:17.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 17:54:17.528 -07 000000626 INF: FPGA: Recv ZSGSRD 29057
17-03-17 17:54:17.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:17.538 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 17:54:17.538 -07 000000475 INF: FPGA: Recv ZPIEZORD 24599
17-03-17 17:54:17.548 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 17:54:17.548 -07 000000610 INF: Z Motor: Piezo is near 32.5 V (nominally 0 to 100 V), expect near 42.3 V, since DAC is at 4.232 V. Piezo Error = -9.8 V.
17-03-17 17:54:17.548 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.0 um, Read 10 ADC samples: Avg = 29054 (-126.2 uncal um), Error = 0.8 uncal um, Median = 29054 (-126.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29044 (-126.1 uncal um), Max = 29060 (-126.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 17:54:17.548 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29054, posNoise = 6, negNoise = 10
17-03-17 17:54:17.548 -07 000000610 INF: Z Motor: After move to -0.126963, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 17:54:17.548 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 17:54:17.548 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 17:54:17.548 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 17:54:17.548 -07 000000431 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 17:54:17.548 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 17:54:17.548 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 17:54:17.548 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 17:54:17.548 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 17:54:17.548 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 17:54:17.548 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 17:54:17.548 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 17:54:17.548 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 17:54:17.548 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 17:54:17.558 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 17:54:17.558 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 17:54:17.558 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 17:54:17.558 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 17:54:17.568 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 17:54:17.568 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 17:54:17.568 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 17:54:17.568 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 17:54:17.568 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 390 390 188 188 27912 150\n [Camera]
17-03-17 17:54:17.768 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 17:54:18.158 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 584
17-03-17 17:54:18.158 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 584
17-03-17 17:54:18.158 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:54:18.158 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:54:18.158 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 17:54:18.158 -07 000000431 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 584
17-03-17 17:54:18.158 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 584
17-03-17 17:54:18.158 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:54:18.158 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:54:18.158 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 17:54:18.348 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27912 775
17-03-17 17:54:18.498 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning grn on 925
17-03-17 17:54:18.538 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 17:54:18.538 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 17:54:18.538 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:54:18.538 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 17:54:18.538 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 17:54:18.538 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:54:18.548 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 17:54:18.548 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 17:54:18.548 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:54:18.548 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 17:54:18.688 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1113
17-03-17 17:54:18.688 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1113
17-03-17 17:54:18.688 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 17:54:18.688 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 17:54:18.688 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 17:54:18.688 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1113
17-03-17 17:54:18.688 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1113
17-03-17 17:54:18.688 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 17:54:18.688 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 17:54:18.688 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 17:54:18.878 -07 000000476 INF: FPGA: Recv @CAMDBLSNAP 1306
17-03-17 17:54:18.878 -07 000000593 INF: FPGA: Recv CAMDBLSNAP
17-03-17 17:54:18.878 -07 000000610 INF: FPGA: 'CAMDBLSNAP 390 390 188 188 27912 150' command took 2 ms to send, 1305 ms to get response, and 1312 ms overall
17-03-17 17:54:19.068 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 17:54:19.068 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 17:54:19.068 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:54:19.068 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 17:54:19.068 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 17:54:19.068 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 17:54:19.068 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 17:54:19.078 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 17:54:19.078 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 17:54:19.078 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 17:54:19.078 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 17:54:19.118 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 41 ms.
17-03-17 17:54:19.118 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 17:54:19.158 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 41 ms.
17-03-17 17:54:19.308 -07 000000610 INF: Enabling Skipping AutoFocus in the next 5 cycles.
17-03-17 17:54:19.308 -07 000000610 INF: Imaging Cycle 6: ScanTilesCommand Cycle 6 time end. Duration was 150905 ms.
17-03-17 17:54:19.308 -07 000000610 INF: =================== Cycle #6 ===================
17-03-17 17:54:19.308 -07 000000610 INF: ===================  ===================
17-03-17 17:54:19.308 -07 000000576 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 17:54:19.318 -07 000000551 INF: FPGA: Recv EXLED1ADCR 25
17-03-17 17:54:19.328 -07 000000576 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 10 ms to get response, and 12 ms overall
17-03-17 17:54:19.328 -07 000000576 INF: GreenLED: Using Green data: Photodiode ADC 25 --> 0.0 mW (old method), or 1.8 mW (new method). Difference = 1.8 mW
17-03-17 17:54:19.328 -07 000000610 WRN: Offset file 'D:\Illumina\MiSeqFGxTemp\170317_M03814_0172_000000000-B2K79\Data\Intensities\Offsets\offsets.txt' does not exist.
17-03-17 17:54:19.328 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.
17-03-17 17:54:19.328 -07 000000576 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 6, FrontChillerTemperature: 3.945808, FrontChillerHeatSinkTemperature: 0.519627, AmbientTemperature: 18.71578, FlowCellCompartmentTemperature: 21.99981, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.51822, GreenLEDSensorTemperature: 25.65533, PhotodiodePowerAdcGreen: 25, PhotodiodePowerMwGreen: 1.835864