17-03-17 23:01:20.238 -07 000000610 INF: =================== Cycle #71 ===================
17-03-17 23:01:20.238 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-17 23:01:20.238 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8315 mm, delta = 0.5490 mm
17-03-17 23:01:20.238 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:01:20.238 -07 000000409 INF: FPGA: Recv YRDPOS 153256
17-03-17 23:01:20.248 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:01:20.248 -07 000000610 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:01:20.248 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-17 23:01:20.248 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-17 23:01:20.248 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-17 23:01:20.368 -07 000000478 INF: FPGA: Recv YMVTO 154377 872
17-03-17 23:01:20.368 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 114 ms to get response, and 119 ms overall
17-03-17 23:01:20.368 -07 000000610 INF: Y Motor: Position error before settling = -2 encoder counts (-0.001 mm)
17-03-17 23:01:20.368 -07 000000610 INF: Y Motor: To move from 74.832 to 75.381 (0.549 mm) should take 877 steps, but required 872 steps (0.545 mm). Slippage = -0.003 mm (-0.01%).
17-03-17 23:01:20.368 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 120 ms, distance = 0.549 mm, average velocity = 4.575 mm/sec
17-03-17 23:01:22.028 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:01:22.028 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 70. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1104, R2=1145, Total=2249. Warn if over 250 bubbles per interval.
17-03-17 23:01:22.688 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 71, FrontChillerTemperature: 4.000345,
17-03-17 23:01:23.368 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:01:23.368 -07 000000478 INF: FPGA: Recv YRDPOS 154379
17-03-17 23:01:23.378 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:01:23.378 -07 000000610 INF: Y Motor: Encoder = 154379 = motor step 120608.6 = 75.3804 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:01:23.398 -07 000000610 INF: Y Motor: After move to 75.380580, error = -0.000209, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:01:23.398 -07 000000610 INF: Y Motor: Position error after settling = 0 encoder counts (0.000 mm), Delta during settling = 2 counts (0.001 mm)
17-03-17 23:01:23.398 -07 000000610 INF: Y Motor: Moved to 75.3804 after 3155 ms
17-03-17 23:01:23.398 -07 000000610 INF: =================== Cycle #71, Flow Cell Temp 60° ===================
17-03-17 23:01:23.398 -07 000000610 INF: =================== Cycle #71, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-17 23:01:23.398 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-17 23:01:23.408 -07 000000415 INF: FPGA: Recv TEC2TEMP 
17-03-17 23:01:23.408 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:01:23.408 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 23:01:23.408 -07 000000482 INF: FPGA: Recv TEC2EN 
17-03-17 23:01:23.418 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:01:23.418 -07 000000610 INF: =================== Cycle #71, Flow Cell Temp 60° ===================
17-03-17 23:01:23.418 -07 000000610 INF: =================== Cycle #71 ===================
17-03-17 23:01:23.418 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 23:01:23.418 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:01:23.448 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 23:01:23.448 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-17 23:01:23.448 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 23:01:23.748 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 23:01:23.768 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 23:01:23.768 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 23:01:23.818 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:01:23.838 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 23:01:23.838 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 23:01:23.938 -07 000000610 INF: =================== Cycle #71, Pumping Reagent PR2 (3) ===================
17-03-17 23:01:23.938 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 23:01:23.938 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:01:23.968 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 23:01:23.968 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 23:01:23.968 -07 000000610 INF: =================== Cycle #71, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 23:01:24.098 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 23:01:24.138 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:01:27.028 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:01:27.028 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 70. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1104, R2=1145, Total=2249. Warn if over 250 bubbles per interval.
17-03-17 23:01:27.268 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:01:27.298 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:01:27.718 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:01:27.748 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:01:28.058 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 71, FrontChillerTemperature: 3.997626,
17-03-17 23:01:28.168 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:01:28.198 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:01:28.198 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 23:01:28.198 -07 000000610 INF: =================== Cycle #71, Pumping Reagent PR2 (3) ===================
17-03-17 23:01:28.328 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:01:28.358 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 23:01:28.358 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 23:01:28.488 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:01:28.518 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 23:01:28.518 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 23:01:28.518 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 23:01:28.648 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 23:01:28.678 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:01:29.108 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:01:29.138 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:01:29.138 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 23:01:29.138 -07 000000610 INF: =================== Cycle #71 ===================
17-03-17 23:01:30.358 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-17 23:01:30.358 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-17 23:01:30.358 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:01:30.378 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 23:01:30.378 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-17 23:01:30.378 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-17 23:01:30.508 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 23:01:30.528 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-17 23:01:30.528 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-17 23:01:30.578 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:01:30.598 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 23:01:30.598 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 23:01:30.698 -07 000000610 INF: =================== Cycle #71, Pumping Reagent CMS (4) ===================
17-03-17 23:01:30.698 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 23:01:30.698 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:01:30.728 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 23:01:30.728 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 23:01:30.728 -07 000000610 INF: =================== Cycle #71, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-17 23:01:30.858 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 23:01:30.898 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:01:32.028 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 5
17-03-17 23:01:32.028 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 70. Bubbles during last 5000 ms interval: R1=5, R2=1, Total=6. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1109, R2=1146, Total=2255. Warn if over 250 bubbles per interval.
17-03-17 23:01:32.338 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:01:32.368 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:01:32.788 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:01:32.818 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:01:32.818 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 23:01:32.818 -07 000000610 INF: =================== Cycle #71, Pumping Reagent CMS (4) ===================
17-03-17 23:01:32.948 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:01:32.978 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 23:01:32.978 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 23:01:33.108 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:01:33.138 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 23:01:33.138 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 23:01:33.138 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 23:01:33.268 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 23:01:33.298 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:01:33.428 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 71, FrontChillerTemperature: 4.009895,
17-03-17 23:01:33.728 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:01:33.758 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:01:33.758 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 23:01:33.758 -07 000000610 INF: =================== Cycle #71 ===================
17-03-17 23:01:34.978 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-17 23:01:34.978 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 23:01:34.978 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:01:34.998 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 23:01:34.998 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-17 23:01:34.998 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-17 23:01:35.148 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 23:01:35.168 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-17 23:01:35.168 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-17 23:01:35.218 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:01:35.238 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 23:01:35.238 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 23:01:35.338 -07 000000610 INF: =================== Cycle #71, Pumping Reagent PR2 (3) ===================
17-03-17 23:01:35.338 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 23:01:35.338 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:01:35.368 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 23:01:35.368 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 23:01:35.368 -07 000000610 INF: =================== Cycle #71, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 23:01:35.498 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 23:01:35.538 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:01:36.408 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:01:36.438 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:01:36.438 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 23:01:36.438 -07 000000610 INF: =================== Cycle #71, Pumping Reagent PR2 (3) ===================
17-03-17 23:01:36.568 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:01:36.598 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 23:01:36.598 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 23:01:36.728 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:01:36.758 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 23:01:36.758 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 23:01:36.758 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 23:01:36.888 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 23:01:36.918 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:01:37.028 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 5 R1 1
17-03-17 23:01:37.028 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 70. Bubbles during last 5000 ms interval: R1=1, R2=5, Total=6. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1110, R2=1151, Total=2261. Warn if over 250 bubbles per interval.
17-03-17 23:01:37.348 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:01:37.378 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:01:37.378 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 23:01:37.378 -07 000000610 INF: =================== Cycle #71 ===================
17-03-17 23:01:37.378 -07 000000541 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 23:01:37.378 -07 000000593 INF: WaitCommand(10000) start
17-03-17 23:01:37.378 -07 000000541 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 23:01:38.598 -07 000000541 INF: AsyncDelayTimer waited 1215ms
17-03-17 23:01:38.598 -07 000000541 INF: LanePump: Xmit /1?\r
17-03-17 23:01:38.628 -07 000000541 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 23:01:38.628 -07 000000541 INF: LanePump: Current Position of Pump is: 1110
17-03-17 23:01:38.758 -07 000000541 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 23:01:38.798 -07 000000541 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:01:38.798 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 71, FrontChillerTemperature: 3.983999,
17-03-17 23:01:40.328 -07 000000541 INF: LanePump: Xmit /1Q\r
17-03-17 23:01:40.358 -07 000000541 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:01:40.778 -07 000000541 INF: LanePump: Xmit /1Q\r
17-03-17 23:01:40.808 -07 000000541 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:01:40.808 -07 000000541 INF: LanePump: Waited 2010 ms for pump motion to complete
17-03-17 23:01:40.808 -07 000000541 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 23:01:40.808 -07 000000541 INF: ===================  ===================
17-03-17 23:01:42.028 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:01:42.028 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 70. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1110, R2=1151, Total=2261. Warn if over 250 bubbles per interval.
17-03-17 23:01:44.178 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 71, FrontChillerTemperature: 3.986717,
17-03-17 23:01:47.028 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:01:47.028 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 70. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1110, R2=1151, Total=2261. Warn if over 250 bubbles per interval.
17-03-17 23:01:47.388 -07 000000593 INF: WaitCommand(10000) end
17-03-17 23:01:47.388 -07 000000610 INF: =================== Cycle #71, Pumping Reagent PR2 (3) ===================
17-03-17 23:01:47.388 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-17 23:01:47.388 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:01:47.428 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 23:01:47.428 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 23:01:47.428 -07 000000610 INF: =================== Cycle #71, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 23:01:47.558 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-17 23:01:47.598 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:01:49.538 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 71, FrontChillerTemperature: 3.996267,
17-03-17 23:01:52.028 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:01:52.028 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 70. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1110, R2=1151, Total=2261. Warn if over 250 bubbles per interval.
17-03-17 23:01:53.728 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:01:53.758 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:01:54.178 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:01:54.208 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:01:54.628 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:01:54.658 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:01:54.908 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 71, FrontChillerTemperature: 4.001704,
17-03-17 23:01:55.078 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:01:55.108 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:01:55.528 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:01:55.558 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:01:55.558 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-17 23:01:55.558 -07 000000610 INF: =================== Cycle #71, Pumping Reagent PR2 (3) ===================
17-03-17 23:01:55.688 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:01:55.718 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 23:01:55.718 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 23:01:55.848 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:01:55.878 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 23:01:55.878 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 23:01:55.878 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 23:01:56.008 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 23:01:56.038 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:01:56.468 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:01:56.498 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:01:56.498 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 23:01:56.498 -07 000000610 INF: =================== Cycle #71 ===================
17-03-17 23:01:57.028 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 8 R1 10
17-03-17 23:01:57.028 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 70. Bubbles during last 5000 ms interval: R1=10, R2=8, Total=18. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1120, R2=1159, Total=2279. Warn if over 250 bubbles per interval.
17-03-17 23:01:57.718 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 23:01:57.718 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-17 23:01:57.718 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:01:57.738 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 23:01:57.738 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-17 23:01:57.738 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-17 23:01:57.948 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 23:01:57.968 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-17 23:01:57.968 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-17 23:01:58.018 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:01:58.038 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 23:01:58.038 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 23:01:58.138 -07 000000610 INF: =================== Cycle #71, Pumping Reagent IMT (1) ===================
17-03-17 23:01:58.138 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 23:01:58.138 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:01:58.168 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 23:01:58.168 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 23:01:58.168 -07 000000610 INF: =================== Cycle #71, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-17 23:01:58.298 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 23:01:58.338 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:01:59.778 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:01:59.808 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:02:00.228 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:02:00.258 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:02:00.258 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 23:02:00.258 -07 000000610 INF: =================== Cycle #71, Pumping Reagent IMT (1) ===================
17-03-17 23:02:00.288 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 71, FrontChillerTemperature: 4.007176,
17-03-17 23:02:00.388 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:02:00.418 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 23:02:00.418 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 23:02:00.548 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:02:00.578 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 23:02:00.578 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 23:02:00.578 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 23:02:00.708 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 23:02:00.738 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:02:01.168 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:02:01.198 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:02:01.198 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 23:02:01.198 -07 000000610 INF: =================== Cycle #71 ===================
17-03-17 23:02:02.028 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 6 R1 3
17-03-17 23:02:02.028 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 70. Bubbles during last 5000 ms interval: R1=3, R2=6, Total=9. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1123, R2=1165, Total=2288. Warn if over 250 bubbles per interval.
17-03-17 23:02:02.418 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 23:02:02.418 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 23:02:02.418 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:02:02.448 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 23:02:02.448 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-17 23:02:02.448 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 23:02:02.678 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 23:02:02.698 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-17 23:02:02.698 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-17 23:02:02.748 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:02:02.768 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 23:02:02.768 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 23:02:02.868 -07 000000610 INF: =================== Cycle #71, Pumping Reagent PR2 (3) ===================
17-03-17 23:02:02.868 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 23:02:02.868 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:02:02.898 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 23:02:02.898 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 23:02:02.898 -07 000000610 INF: =================== Cycle #71, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 23:02:03.028 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 23:02:03.068 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:02:03.938 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:02:03.968 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:02:03.968 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 23:02:03.968 -07 000000610 INF: =================== Cycle #71, Pumping Reagent PR2 (3) ===================
17-03-17 23:02:04.098 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:02:04.128 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 23:02:04.128 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 23:02:04.258 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:02:04.288 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 23:02:04.288 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 23:02:04.288 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 23:02:04.418 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 23:02:04.448 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:02:04.878 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:02:04.908 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:02:04.908 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 23:02:04.908 -07 000000610 INF: =================== Cycle #71 ===================
17-03-17 23:02:04.908 -07 000000610 INF: =================== Cycle #71, Flow Cell Temp 65° ===================
17-03-17 23:02:04.908 -07 000000610 INF: =================== Cycle #71, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-17 23:02:04.908 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-17 23:02:04.908 -07 000000561 INF: FPGA: Recv TEC2TEMP 
17-03-17 23:02:04.918 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:02:04.918 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 23:02:04.918 -07 000000478 INF: FPGA: Recv TEC2EN 
17-03-17 23:02:04.928 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:02:04.928 -07 000000610 INF: =================== Cycle #71, Flow Cell Temp 65° ===================
17-03-17 23:02:04.928 -07 000000610 INF: =================== Cycle #71 ===================
17-03-17 23:02:04.928 -07 000000610 INF: WaitCommand(30000) start
17-03-17 23:02:05.648 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 71, FrontChillerTemperature: 3.977204,
17-03-17 23:02:07.028 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 1
17-03-17 23:02:07.028 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 70. Bubbles during last 5000 ms interval: R1=1, R2=2, Total=3. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1124, R2=1167, Total=2291. Warn if over 250 bubbles per interval.
17-03-17 23:02:11.018 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 71, FrontChillerTemperature: 3.993549,
17-03-17 23:02:12.028 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 23:02:12.028 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 70. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1124, R2=1168, Total=2292. Warn if over 250 bubbles per interval.
17-03-17 23:02:16.388 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 71, FrontChillerTemperature: 3.98264,
17-03-17 23:02:17.028 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 23:02:17.028 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 70. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1124, R2=1169, Total=2293. Warn if over 250 bubbles per interval.
17-03-17 23:02:21.758 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 71, FrontChillerTemperature: 4.007176,
17-03-17 23:02:22.028 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:02:22.028 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 70. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1124, R2=1169, Total=2293. Warn if over 250 bubbles per interval.
17-03-17 23:02:27.028 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:02:27.028 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 70. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1124, R2=1169, Total=2293. Warn if over 250 bubbles per interval.
17-03-17 23:02:27.128 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 71, FrontChillerTemperature: 4.005817,
17-03-17 23:02:32.028 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:02:32.028 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 70. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1124, R2=1169, Total=2293. Warn if over 250 bubbles per interval.
17-03-17 23:02:32.498 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 71, FrontChillerTemperature: 4.014009,
17-03-17 23:02:34.938 -07 000000610 INF: WaitCommand(30000) end
17-03-17 23:02:34.938 -07 000000610 INF: =================== Cycle #71, Pumping Reagent PR2 (3) ===================
17-03-17 23:02:34.938 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-17 23:02:35.038 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:02:35.068 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 23:02:35.068 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 23:02:35.068 -07 000000610 INF: =================== Cycle #71, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 23:02:35.198 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-17 23:02:35.238 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:02:35.778 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:02:35.808 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:02:35.808 -07 000000610 INF: LanePump: Waited 570 ms for pump motion to complete
17-03-17 23:02:35.808 -07 000000610 INF: =================== Cycle #71, Pumping Reagent PR2 (3) ===================
17-03-17 23:02:35.938 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:02:35.968 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 23:02:35.968 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 23:02:36.098 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:02:36.128 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 23:02:36.128 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 23:02:36.128 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 23:02:36.258 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 23:02:36.288 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:02:36.718 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:02:36.748 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:02:36.748 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 23:02:36.748 -07 000000610 INF: =================== Cycle #71 ===================
17-03-17 23:02:36.748 -07 000000623 INF: WaitCommand(30000) start
17-03-17 23:02:36.748 -07 000000502 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 23:02:36.748 -07 000000502 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 23:02:37.028 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:02:37.028 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 70. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1124, R2=1169, Total=2293. Warn if over 250 bubbles per interval.
17-03-17 23:02:37.878 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 71, FrontChillerTemperature: 4.033041,
17-03-17 23:02:37.968 -07 000000502 INF: AsyncDelayTimer waited 1216ms
17-03-17 23:02:37.968 -07 000000502 INF: LanePump: Xmit /1?\r
17-03-17 23:02:37.998 -07 000000502 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 23:02:37.998 -07 000000502 INF: LanePump: Current Position of Pump is: 1920
17-03-17 23:02:38.128 -07 000000502 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 23:02:38.168 -07 000000502 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:02:40.508 -07 000000502 INF: LanePump: Xmit /1Q\r
17-03-17 23:02:40.538 -07 000000502 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:02:40.958 -07 000000502 INF: LanePump: Xmit /1Q\r
17-03-17 23:02:40.988 -07 000000502 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:02:40.988 -07 000000502 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-17 23:02:40.988 -07 000000502 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 23:02:40.988 -07 000000502 INF: ===================  ===================
17-03-17 23:02:42.028 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:02:42.028 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 70. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1124, R2=1169, Total=2293. Warn if over 250 bubbles per interval.
17-03-17 23:02:43.238 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 71, FrontChillerTemperature: 4.020806,
17-03-17 23:02:47.028 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:02:47.028 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 70. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1124, R2=1169, Total=2293. Warn if over 250 bubbles per interval.
17-03-17 23:02:48.608 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 71, FrontChillerTemperature: 4.023489,
17-03-17 23:02:52.028 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:02:52.028 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 70. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1124, R2=1169, Total=2293. Warn if over 250 bubbles per interval.
17-03-17 23:02:53.978 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 71, FrontChillerTemperature: 3.989471,
17-03-17 23:02:57.028 -07 000000409 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:02:57.028 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 70. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1124, R2=1169, Total=2293. Warn if over 250 bubbles per interval.
17-03-17 23:02:59.358 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 71, FrontChillerTemperature: 3.981281,
17-03-17 23:03:02.028 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:03:02.028 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 70. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1124, R2=1169, Total=2293. Warn if over 250 bubbles per interval.
17-03-17 23:03:04.718 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 71, FrontChillerTemperature: 3.964938,
17-03-17 23:03:06.758 -07 000000623 INF: WaitCommand(30000) end
17-03-17 23:03:06.758 -07 000000610 INF: =================== Cycle #71, Flow Cell Temp 22° ===================
17-03-17 23:03:06.758 -07 000000610 INF: =================== Cycle #71, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-17 23:03:06.758 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-17 23:03:06.768 -07 000000486 INF: FPGA: Recv TEC2TEMP 
17-03-17 23:03:06.768 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 23:03:06.768 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 23:03:06.768 -07 000000475 INF: FPGA: Recv TEC2EN 
17-03-17 23:03:06.778 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:03:06.778 -07 000000610 INF: =================== Cycle #71, Flow Cell Temp 22° ===================
17-03-17 23:03:06.778 -07 000000610 INF: =================== Cycle #71 ===================
17-03-17 23:03:06.778 -07 000000610 INF: =================== Cycle #71, Pumping Reagent PR2 (3) ===================
17-03-17 23:03:06.778 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 23:03:06.778 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:03:06.808 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 23:03:06.808 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 23:03:06.808 -07 000000610 INF: =================== Cycle #71, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 23:03:06.938 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 23:03:06.978 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:03:07.028 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:03:07.028 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 70. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1124, R2=1169, Total=2293. Warn if over 250 bubbles per interval.
17-03-17 23:03:10.088 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 71, FrontChillerTemperature: 3.963579,
17-03-17 23:03:10.108 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:03:10.138 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:03:10.558 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:03:10.588 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:03:11.008 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:03:11.038 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:03:11.038 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 23:03:11.038 -07 000000610 INF: =================== Cycle #71, Pumping Reagent PR2 (3) ===================
17-03-17 23:03:11.168 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:03:11.198 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 23:03:11.198 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 23:03:11.328 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:03:11.358 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 23:03:11.358 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 23:03:11.358 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 23:03:11.488 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 23:03:11.518 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:03:11.948 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:03:11.978 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:03:11.978 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 23:03:11.978 -07 000000610 INF: =================== Cycle #71 ===================
17-03-17 23:03:12.028 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 7 R1 6
17-03-17 23:03:12.028 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 70. Bubbles during last 5000 ms interval: R1=6, R2=7, Total=13. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1130, R2=1176, Total=2306. Warn if over 250 bubbles per interval.
17-03-17 23:03:13.198 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 23:03:13.198 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-17 23:03:13.198 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:03:13.218 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 23:03:13.218 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-17 23:03:13.218 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-17 23:03:13.368 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 23:03:13.388 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 23:03:13.388 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 23:03:13.438 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:03:13.458 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 23:03:13.458 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 23:03:13.558 -07 000000610 INF: =================== Cycle #71, Pumping Reagent USM (2) ===================
17-03-17 23:03:13.558 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 23:03:13.558 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:03:13.588 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 23:03:13.588 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 23:03:13.588 -07 000000610 INF: =================== Cycle #71, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-17 23:03:13.718 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 23:03:13.758 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:03:15.198 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:03:15.228 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:03:15.458 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 71, FrontChillerTemperature: 3.977204,
17-03-17 23:03:15.648 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:03:15.678 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:03:15.678 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 23:03:15.678 -07 000000610 INF: =================== Cycle #71, Pumping Reagent USM (2) ===================
17-03-17 23:03:15.808 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:03:15.838 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 23:03:15.838 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 23:03:15.968 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:03:15.998 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 23:03:15.998 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 23:03:15.998 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 23:03:16.128 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 23:03:16.158 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:03:16.588 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:03:16.618 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:03:16.618 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 23:03:16.618 -07 000000610 INF: =================== Cycle #71 ===================
17-03-17 23:03:17.028 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 2
17-03-17 23:03:17.028 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 70. Bubbles during last 5000 ms interval: R1=2, R2=1, Total=3. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1132, R2=1177, Total=2309. Warn if over 250 bubbles per interval.
17-03-17 23:03:17.838 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 23:03:17.838 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 23:03:17.838 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:03:17.858 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 23:03:17.858 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-17 23:03:17.858 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 23:03:18.008 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 23:03:18.028 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 23:03:18.028 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 23:03:18.078 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:03:18.098 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 23:03:18.098 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 23:03:18.198 -07 000000610 INF: =================== Cycle #71, Pumping Reagent PR2 (3) ===================
17-03-17 23:03:18.198 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 23:03:18.198 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:03:18.228 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 23:03:18.228 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 23:03:18.228 -07 000000610 INF: =================== Cycle #71, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 23:03:18.358 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 23:03:18.398 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:03:19.268 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:03:19.298 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:03:19.298 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 23:03:19.298 -07 000000610 INF: =================== Cycle #71, Pumping Reagent PR2 (3) ===================
17-03-17 23:03:19.428 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:03:19.458 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 23:03:19.458 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 23:03:19.588 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:03:19.618 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 23:03:19.618 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 23:03:19.618 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 23:03:19.748 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 23:03:19.778 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:03:20.208 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:03:20.238 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:03:20.238 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 23:03:20.238 -07 000000610 INF: =================== Cycle #71 ===================
17-03-17 23:03:20.238 -07 000000541 INF: WaitCommand(10000) start
17-03-17 23:03:20.238 -07 000000593 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 23:03:20.238 -07 000000593 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 23:03:20.828 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 71, FrontChillerTemperature: 3.993549,
17-03-17 23:03:21.458 -07 000000593 INF: AsyncDelayTimer waited 1214ms
17-03-17 23:03:21.458 -07 000000593 INF: LanePump: Xmit /1?\r
17-03-17 23:03:21.488 -07 000000593 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 23:03:21.488 -07 000000593 INF: LanePump: Current Position of Pump is: 1110
17-03-17 23:03:21.618 -07 000000593 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 23:03:21.658 -07 000000593 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:03:22.028 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 23:03:22.028 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 70. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1132, R2=1178, Total=2310. Warn if over 250 bubbles per interval.
17-03-17 23:03:23.188 -07 000000593 INF: LanePump: Xmit /1Q\r
17-03-17 23:03:23.218 -07 000000593 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:03:23.638 -07 000000593 INF: LanePump: Xmit /1Q\r
17-03-17 23:03:23.668 -07 000000593 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:03:23.668 -07 000000593 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 23:03:23.668 -07 000000593 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 23:03:23.668 -07 000000593 INF: ===================  ===================
17-03-17 23:03:26.198 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 71, FrontChillerTemperature: 4.023489,
17-03-17 23:03:27.028 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:03:27.028 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 70. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1132, R2=1178, Total=2310. Warn if over 250 bubbles per interval.
17-03-17 23:03:30.248 -07 000000541 INF: WaitCommand(10000) end
17-03-17 23:03:30.248 -07 000000610 INF: =================== Cycle #71, Imaging ===================
17-03-17 23:03:30.248 -07 000000610 INF: Imaging Cycle 71: ScanTilesCommand Cycle 71 time start.
17-03-17 23:03:30.248 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-17 23:03:30.248 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:03:30.278 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 23:03:30.278 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-17 23:03:30.278 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-17 23:03:30.578 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 23:03:30.598 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 23:03:30.598 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 23:03:30.648 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:03:30.668 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 23:03:30.668 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:03:30.668 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:03:30.668 -07 000000482 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-17 23:03:30.668 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:03:30.668 -07 000000482 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-17 23:03:30.668 -07 000000502 INF: FPGA: Recv EXLED1ON 
17-03-17 23:03:30.678 -07 000000482 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:03:30.678 -07 000000482 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-17 23:03:30.678 -07 000000475 INF: FPGA: Recv EXLED1ADCR 23127
17-03-17 23:03:30.688 -07 000000482 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:30.688 -07 000000482 INF: RedLED: Using Red data: Photodiode ADC 23127 --> 7.4 mW (old method), or 205.0 mW (new method). Difference = 197.6 mW
17-03-17 23:03:30.688 -07 000000482 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-17 23:03:30.688 -07 000000561 INF: FPGA: Recv EXLED1OFF 
17-03-17 23:03:30.698 -07 000000482 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:03:30.698 -07 000000482 INF: RedLED: LED was on for 19 ms
17-03-17 23:03:30.698 -07 000000482 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 25 ms.
17-03-17 23:03:30.698 -07 000000482 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-17 23:03:30.698 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:03:30.698 -07 000000482 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-17 23:03:30.698 -07 000000547 INF: FPGA: Recv EXLED2ON 
17-03-17 23:03:30.708 -07 000000482 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:03:30.708 -07 000000482 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 23:03:30.708 -07 000000501 INF: FPGA: Recv EXLED1ADCR 2101
17-03-17 23:03:30.718 -07 000000482 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:30.718 -07 000000482 INF: GreenLED: Using Green data: Photodiode ADC 2101 --> 0.9 mW (old method), or 182.5 mW (new method). Difference = 181.6 mW
17-03-17 23:03:30.718 -07 000000482 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-17 23:03:30.718 -07 000000541 INF: FPGA: Recv EXLED2OFF 
17-03-17 23:03:30.728 -07 000000482 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:30.728 -07 000000482 INF: GreenLED: LED was on for 20 ms
17-03-17 23:03:30.728 -07 000000482 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-17 23:03:30.728 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 23:03:30.728 -07 000000623 INF: FPGA: Recv EMCUR 
17-03-17 23:03:30.738 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:03:30.738 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-17 23:03:31.238 -07 000000462 INF: FPGA: Recv EMOUT
17-03-17 23:03:31.238 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 23:03:31.238 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-17 23:03:31.238 -07 000000482 INF: FPGA: Recv EMCUR 
17-03-17 23:03:31.248 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:03:31.248 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:03:31.248 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.38037109375, Z-Position -0.127807559156287. ------
17-03-17 23:03:31.248 -07 000000429 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17929 mm
17-03-17 23:03:31.248 -07 000000429 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:03:31.258 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:03:31.258 -07 000000478 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 23:03:31.258 -07 000000478 INF: Y Motor: Moving to 59.9126 mm, started at 75.3804 mm, delta = -15.4678 mm
17-03-17 23:03:31.258 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 39166, sync = True, waitForSettling = False)
17-03-17 23:03:31.258 -07 000000462 INF: Z Motor: Moving to -0.179290 mm, started at -0.127808 mm, distance = -51.48 um
17-03-17 23:03:31.258 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:03:31.268 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 23:03:31.268 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:03:31.268 -07 000000502 INF: FPGA: Recv YRDPOS 154379
17-03-17 23:03:31.278 -07 000000462 INF: FPGA: Xmit ZDACW 39166\n [Z Motor]
17-03-17 23:03:31.278 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:03:31.278 -07 000000478 INF: Y Motor: Encoder = 154379 = motor step 120608.6 = 75.3804 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:03:31.278 -07 000000478 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-17 23:03:31.278 -07 000000478 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 23:03:31.278 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 23:03:31.288 -07 000000462 INF: FPGA: 'ZDACW 39166' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:03:31.288 -07 000000541 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:03:31.298 -07 000000478 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 23:03:31.308 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:03:31.308 -07 000000501 INF: FPGA: Recv ZDACR 39166
17-03-17 23:03:31.318 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:03:31.318 -07 000000462 INF: Z Motor: MoveAbsStepped took 59 ms (did NOT wait for settling yet))
17-03-17 23:03:31.488 -07 000000623 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:03:31.488 -07 000000541 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 23:03:31.568 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 71, FrontChillerTemperature: 4.038479,
17-03-17 23:03:32.028 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:03:32.028 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 70. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1132, R2=1178, Total=2310. Warn if over 250 bubbles per interval.
17-03-17 23:03:32.978 -07 000000502 INF: FPGA: Recv YMVTO 122703 24776
17-03-17 23:03:32.978 -07 000000478 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1675 ms to get response, and 1705 ms overall
17-03-17 23:03:32.978 -07 000000478 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 23:03:32.978 -07 000000478 INF: Y Motor: To move from 75.380 to 59.913 (-15.468 mm) should take 24748 steps, but required 24776 steps (15.485 mm). Slippage = 0.018 mm (0.00%).
17-03-17 23:03:32.978 -07 000000478 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1705 ms, distance = 15.468 mm, average velocity = 9.072 mm/sec
17-03-17 23:03:35.828 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:03:35.828 -07 000000502 INF: FPGA: Recv YRDPOS 122697
17-03-17 23:03:35.838 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:03:35.838 -07 000000478 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:03:35.858 -07 000000478 INF: Y Motor: After move to 59.912609, error = -0.001965, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:03:35.858 -07 000000478 INF: Y Motor: Position error after settling = -4 encoder counts (-0.002 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-17 23:03:35.858 -07 000000478 INF: Y Motor: Moved to 59.9106 after 4605 ms
17-03-17 23:03:35.858 -07 000000429 INF: Z Motor: EndOfMoveAbsStepped: target = -0.179290 mm (DAC = 39166)
17-03-17 23:03:35.858 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:35.868 -07 000000593 INF: FPGA: Recv ZSGSRD 37202
17-03-17 23:03:35.868 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 23:03:35.868 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:35.868 -07 000000541 INF: FPGA: Recv ZSGSRD 37200
17-03-17 23:03:35.878 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:03:35.878 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:35.878 -07 000000486 INF: FPGA: Recv ZSGSRD 37199
17-03-17 23:03:35.888 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:35.888 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:35.888 -07 000000415 INF: FPGA: Recv ZSGSRD 37197
17-03-17 23:03:35.898 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:35.898 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:35.898 -07 000000501 INF: FPGA: Recv ZSGSRD 37199
17-03-17 23:03:35.908 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:35.908 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:35.908 -07 000000593 INF: FPGA: Recv ZSGSRD 37204
17-03-17 23:03:35.918 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:35.918 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:35.918 -07 000000541 INF: FPGA: Recv ZSGSRD 37197
17-03-17 23:03:35.928 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:35.928 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:35.928 -07 000000623 INF: FPGA: Recv ZSGSRD 37198
17-03-17 23:03:35.938 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:35.938 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:35.938 -07 000000415 INF: FPGA: Recv ZSGSRD 37196
17-03-17 23:03:35.948 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:35.948 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:35.948 -07 000000462 INF: FPGA: Recv ZSGSRD 37199
17-03-17 23:03:35.958 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:35.958 -07 000000429 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:03:35.958 -07 000000475 INF: FPGA: Recv ZPIEZORD 33553
17-03-17 23:03:35.968 -07 000000429 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:35.968 -07 000000429 INF: Z Motor: Piezo is near 51.7 V (nominally 0 to 100 V), expect near 59.8 V, since DAC is at 5.976 V. Piezo Error = -8.1 V.
17-03-17 23:03:35.968 -07 000000429 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.3 um, Read 10 ADC samples: Avg = 37199 (-178.4 uncal um), Error = 0.9 uncal um, Median = 37199 (-178.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 37196 (-178.4 uncal um), Max = 37204 (-178.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 23:03:35.968 -07 000000429 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37199, posNoise = 5, negNoise = 3
17-03-17 23:03:35.968 -07 000000429 INF: Z Motor: After move to -0.179290, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:03:35.968 -07 000000429 INF: Z Motor: Settle wait time = 4608 ms, measure time = 101 ms (allowed 150 ms), total time = 4709 ms
17-03-17 23:03:35.968 -07 000000429 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 23:03:36.018 -07 000000429 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4762 ms
17-03-17 23:03:36.018 -07 000000429 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:03:36.018 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:03:36.018 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:03:36.018 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:03:36.018 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:03:36.018 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:03:36.018 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:03:36.018 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:03:36.018 -07 000000541 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 23:03:36.048 -07 000000541 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-17 23:03:36.048 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:03:36.048 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 23:03:36.048 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:03:36.058 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 23:03:36.058 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 43 ms.
17-03-17 23:03:36.068 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:03:36.108 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:03:36.308 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:03:36.308 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:03:36.308 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:03:36.308 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) start.
17-03-17 23:03:36.348 -07 000000415 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:03:36.348 -07 000000475 INF: FPGA: Recv CAMSNAP
17-03-17 23:03:36.348 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 23:03:36.438 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 23:03:36.438 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:03:36.438 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 23:03:36.438 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 23:03:36.548 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:03:36.548 -07 000000547 INF: Image SNR check: start
17-03-17 23:03:36.548 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:03:36.558 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:03:36.558 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:03:36.558 -07 000000547 INF: Image SNR check: pass  [peak (Max-Min)=57.16]
17-03-17 23:03:36.558 -07 000000547 INF: Autofocus start
17-03-17 23:03:36.558 -07 000000547 INF: MeasureProfile start
17-03-17 23:03:36.578 -07 000000547 INF: MeasureProfile done
17-03-17 23:03:36.578 -07 000000547 INF: X=16  Z correction [um]=0.01042744
17-03-17 23:03:36.578 -07 000000547 INF: Autofocus finished
17-03-17 23:03:36.758 -07 000000415 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:03:36.758 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 191 ms to get response, and 202 ms overall
17-03-17 23:03:36.758 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91064453125, Z-position -0.179297619472501. ----------
17-03-17 23:03:36.758 -07 000000610 INF: Cycle	71	Tile	1	Exposure Settings		A	466	G	224	T	224	C	466
17-03-17 23:03:36.758 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37681, sync = True, waitForSettling = True)
17-03-17 23:03:36.768 -07 000000610 INF: Z Motor: Moving to -0.172493 mm, started at -0.179298 mm, distance = 6.81 um
17-03-17 23:03:36.768 -07 000000610 INF: FPGA: Xmit ZDACW 37681\n [Z Motor]
17-03-17 23:03:36.768 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 23:03:36.778 -07 000000610 INF: FPGA: 'ZDACW 37681' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:03:36.778 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:03:36.778 -07 000000475 INF: FPGA: Recv ZDACR 37681
17-03-17 23:03:36.788 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:36.788 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:03:36.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:36.938 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 71, FrontChillerTemperature: 4.014009,
17-03-17 23:03:36.938 -07 000000409 INF: FPGA: Recv ZSGSRD 36143
17-03-17 23:03:36.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:03:36.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:36.968 -07 000000627 INF: FPGA: Recv ZSGSRD 36139
17-03-17 23:03:36.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:03:36.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:36.978 -07 000000623 INF: FPGA: Recv ZSGSRD 36146
17-03-17 23:03:36.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:03:36.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:36.998 -07 000000462 INF: FPGA: Recv ZSGSRD 36136
17-03-17 23:03:37.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:03:37.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:37.008 -07 000000551 INF: FPGA: Recv ZSGSRD 36146
17-03-17 23:03:37.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:03:37.028 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:03:37.028 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 70. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1132, R2=1178, Total=2310. Warn if over 250 bubbles per interval.
17-03-17 23:03:37.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:37.038 -07 000000561 INF: FPGA: Recv ZSGSRD 36133
17-03-17 23:03:37.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:03:37.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:37.048 -07 000000409 INF: FPGA: Recv ZSGSRD 36145
17-03-17 23:03:37.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:37.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:37.058 -07 000000415 INF: FPGA: Recv ZSGSRD 36144
17-03-17 23:03:37.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:37.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:37.068 -07 000000382 INF: FPGA: Recv ZSGSRD 36135
17-03-17 23:03:37.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:37.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:37.078 -07 000000478 INF: FPGA: Recv ZSGSRD 36142
17-03-17 23:03:37.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:37.088 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:03:37.088 -07 000000561 INF: FPGA: Recv ZPIEZORD 32141
17-03-17 23:03:37.098 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:37.098 -07 000000610 INF: Z Motor: Piezo is near 48.7 V (nominally 0 to 100 V), expect near 57.5 V, since DAC is at 5.750 V. Piezo Error = -8.8 V.
17-03-17 23:03:37.098 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.5 um, Read 10 ADC samples: Avg = 36141 (-171.6 uncal um), Error = 0.9 uncal um, Median = 36142 (-171.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36133 (-171.6 uncal um), Max = 36146 (-171.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 23:03:37.098 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36141, posNoise = 5, negNoise = 8
17-03-17 23:03:37.098 -07 000000610 INF: Z Motor: After move to -0.172493, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:03:37.098 -07 000000610 INF: Z Motor: MoveAbsStepped took 331 ms)
17-03-17 23:03:37.098 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:03:37.098 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:03:37.098 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:03:37.098 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:03:37.098 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:03:37.098 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:03:37.098 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:03:37.098 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:03:37.098 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:03:37.098 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:03:37.098 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:03:37.098 -07 000000593 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 23:03:37.108 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 23:03:37.108 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:03:37.118 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 23:03:37.118 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 23:03:37.128 -07 000000593 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 23 ms.
17-03-17 23:03:37.128 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:03:37.128 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 23:03:37.128 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:03:37.148 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 23:03:37.148 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 45 ms.
17-03-17 23:03:37.148 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 466 466 224 224 37857 150\n [Camera]
17-03-17 23:03:37.348 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:03:37.818 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 658
17-03-17 23:03:37.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 658
17-03-17 23:03:37.818 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:03:37.818 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:03:37.818 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-17 23:03:37.818 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 658
17-03-17 23:03:37.818 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 658
17-03-17 23:03:37.818 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:03:37.818 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:03:37.818 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 23:03:38.008 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37857 851
17-03-17 23:03:38.158 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1001
17-03-17 23:03:38.218 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 23:03:38.218 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 23:03:38.218 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:03:38.218 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 23:03:38.218 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 23:03:38.218 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:03:38.218 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 23:03:38.218 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 23:03:38.228 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 23:03:38.238 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 23:03:38.378 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1225
17-03-17 23:03:38.378 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1225
17-03-17 23:03:38.378 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:03:38.388 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:03:38.388 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2602438304, 0x0, 391868352) start.
17-03-17 23:03:38.388 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1225
17-03-17 23:03:38.388 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1225
17-03-17 23:03:38.388 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:03:38.388 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:03:38.388 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-17 23:03:38.578 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP 1417
17-03-17 23:03:38.578 -07 000000627 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:03:38.578 -07 000000610 INF: FPGA: 'CAMDBLSNAP 466 466 224 224 37857 150' command took 2 ms to send, 1420 ms to get response, and 1424 ms overall
17-03-17 23:03:38.578 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:03:38.578 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91064453125, Z-Position -0.172500803026518. ------
17-03-17 23:03:38.578 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:03:38.578 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17846 mm
17-03-17 23:03:38.578 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:03:38.578 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:03:38.588 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:03:38.588 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 38985, sync = True, waitForSettling = False)
17-03-17 23:03:38.588 -07 000000627 INF: Z Motor: Moving to -0.178462 mm, started at -0.172501 mm, distance = -5.96 um
17-03-17 23:03:38.588 -07 000000482 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:03:38.588 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 23:03:38.588 -07 000000623 INF: Y Motor: Moving to 60.7426 mm, started at 59.9106 mm, delta = 0.8320 mm
17-03-17 23:03:38.598 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:03:38.598 -07 000000382 INF: FPGA: Recv YRDPOS 122697
17-03-17 23:03:38.608 -07 000000627 INF: FPGA: Xmit ZDACW 38985\n [Z Motor]
17-03-17 23:03:38.608 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 23:03:38.608 -07 000000623 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:03:38.608 -07 000000623 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:03:38.608 -07 000000623 INF: Y Motor: Moving 1331 steps2
17-03-17 23:03:38.608 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 23:03:38.618 -07 000000627 INF: FPGA: 'ZDACW 38985' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:03:38.618 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:03:38.618 -07 000000409 INF: FPGA: Recv ZDACR 38985
17-03-17 23:03:38.628 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:03:38.628 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:38.628 -07 000000627 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-17 23:03:38.788 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2602438304, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 23:03:38.788 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 23:03:38.788 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:03:38.788 -07 000000551 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:03:38.788 -07 000000482 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-17 23:03:38.788 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 23:03:38.788 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 23:03:38.788 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:03:38.798 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-17 23:03:38.798 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 23:03:38.798 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 23:03:38.798 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-17 23:03:38.998 -07 000000551 INF: FPGA: Recv YMVTILE
17-03-17 23:03:38.998 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 398 ms overall
17-03-17 23:03:39.038 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:03:39.038 -07 000000627 INF: FPGA: Recv YRDPOS 124380
17-03-17 23:03:39.048 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:03:39.048 -07 000000623 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:03:39.048 -07 000000623 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-17 23:03:39.048 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.832 mm, average velocity = 2.090 mm/sec
17-03-17 23:03:39.998 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:03:39.998 -07 000000618 INF: FPGA: Recv YRDPOS 124380
17-03-17 23:03:40.008 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:40.008 -07 000000623 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:03:40.028 -07 000000623 INF: Y Motor: After move to 60.742607, error = -0.010185, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:03:40.028 -07 000000623 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:03:40.028 -07 000000623 INF: Y Motor: Moved to 60.7324 after 1446 ms (table move)
17-03-17 23:03:40.038 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178462 mm (DAC = 38985)
17-03-17 23:03:40.038 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:40.038 -07 000000627 INF: FPGA: Recv ZSGSRD 37073
17-03-17 23:03:40.048 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:40.048 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:40.048 -07 000000415 INF: FPGA: Recv ZSGSRD 37073
17-03-17 23:03:40.058 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:40.058 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:40.058 -07 000000429 INF: FPGA: Recv ZSGSRD 37070
17-03-17 23:03:40.068 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:40.068 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:40.068 -07 000000501 INF: FPGA: Recv ZSGSRD 37072
17-03-17 23:03:40.078 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:40.078 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:40.078 -07 000000486 INF: FPGA: Recv ZSGSRD 37070
17-03-17 23:03:40.088 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:40.088 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:40.088 -07 000000478 INF: FPGA: Recv ZSGSRD 37077
17-03-17 23:03:40.098 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:40.098 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:40.098 -07 000000551 INF: FPGA: Recv ZSGSRD 37074
17-03-17 23:03:40.108 -07 000000462 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:40.108 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:40.108 -07 000000486 INF: FPGA: Recv ZSGSRD 37067
17-03-17 23:03:40.118 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:40.118 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:40.118 -07 000000561 INF: FPGA: Recv ZSGSRD 37069
17-03-17 23:03:40.128 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:40.128 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:40.128 -07 000000448 INF: FPGA: Recv ZSGSRD 37070
17-03-17 23:03:40.138 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:40.138 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:03:40.138 -07 000000547 INF: FPGA: Recv ZPIEZORD 33436
17-03-17 23:03:40.148 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:40.148 -07 000000462 INF: Z Motor: Piezo is near 51.4 V (nominally 0 to 100 V), expect near 59.5 V, since DAC is at 5.949 V. Piezo Error = -8.1 V.
17-03-17 23:03:40.148 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.5 um, Read 10 ADC samples: Avg = 37072 (-177.6 uncal um), Error = 0.9 uncal um, Median = 37071 (-177.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 37067 (-177.6 uncal um), Max = 37077 (-177.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:03:40.148 -07 000000462 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37072, posNoise = 5, negNoise = 5
17-03-17 23:03:40.148 -07 000000462 INF: Z Motor: After move to -0.178462, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:03:40.148 -07 000000462 INF: Z Motor: Settle wait time = 1450 ms, measure time = 110 ms (allowed 150 ms), total time = 1560 ms
17-03-17 23:03:40.148 -07 000000462 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 23:03:40.188 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1604 ms
17-03-17 23:03:40.188 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:03:40.188 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:03:40.188 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:03:40.188 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:03:40.188 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:03:40.188 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:03:40.188 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:03:40.188 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:03:40.188 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:03:40.198 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:03:40.198 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:03:40.208 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 23:03:40.208 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 23:03:40.208 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:03:40.258 -07 000000593 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:03:40.458 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:03:40.458 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:03:40.458 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:03:40.458 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2402648392, 0x0, 559484976) start.
17-03-17 23:03:40.498 -07 000000576 INF: FPGA: Recv @CAMSNAP 282
17-03-17 23:03:40.498 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-17 23:03:40.498 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 287 ms overall
17-03-17 23:03:40.578 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2402648392, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 23:03:40.578 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:03:40.588 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 23:03:40.588 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 23:03:40.598 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:03:40.598 -07 000000547 INF: Autofocus start
17-03-17 23:03:40.598 -07 000000547 INF: MeasureProfile start
17-03-17 23:03:40.608 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:03:40.608 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:03:40.608 -07 000000415 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:03:40.608 -07 000000547 INF: MeasureProfile done
17-03-17 23:03:40.608 -07 000000547 INF: X=0  Z correction [um]=-0.0713522
17-03-17 23:03:40.608 -07 000000547 INF: Autofocus finished
17-03-17 23:03:40.808 -07 000000409 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:03:40.808 -07 000000415 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:03:40.808 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.732421875, Z-position -0.178481744530497. ----------
17-03-17 23:03:40.808 -07 000000610 INF: Cycle	71	Tile	2	Exposure Settings		A	466	G	224	T	224	C	466
17-03-17 23:03:40.818 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37482, sync = True, waitForSettling = True)
17-03-17 23:03:40.818 -07 000000610 INF: Z Motor: Moving to -0.171582 mm, started at -0.178482 mm, distance = 6.90 um
17-03-17 23:03:40.818 -07 000000610 INF: FPGA: Xmit ZDACW 37482\n [Z Motor]
17-03-17 23:03:40.818 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 23:03:40.828 -07 000000610 INF: FPGA: 'ZDACW 37482' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:03:40.828 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:03:40.828 -07 000000482 INF: FPGA: Recv ZDACR 37482
17-03-17 23:03:40.838 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:40.838 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:03:40.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:40.988 -07 000000409 INF: FPGA: Recv ZSGSRD 36001
17-03-17 23:03:40.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:03:40.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:40.998 -07 000000627 INF: FPGA: Recv ZSGSRD 36001
17-03-17 23:03:41.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:41.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:41.008 -07 000000502 INF: FPGA: Recv ZSGSRD 36001
17-03-17 23:03:41.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:41.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:41.018 -07 000000541 INF: FPGA: Recv ZSGSRD 36005
17-03-17 23:03:41.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:41.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:41.028 -07 000000415 INF: FPGA: Recv ZSGSRD 36002
17-03-17 23:03:41.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:41.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:41.038 -07 000000486 INF: FPGA: Recv ZSGSRD 35998
17-03-17 23:03:41.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:41.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:41.048 -07 000000618 INF: FPGA: Recv ZSGSRD 36002
17-03-17 23:03:41.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:41.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:41.058 -07 000000486 INF: FPGA: Recv ZSGSRD 36003
17-03-17 23:03:41.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:41.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:41.068 -07 000000627 INF: FPGA: Recv ZSGSRD 35997
17-03-17 23:03:41.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:41.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:41.078 -07 000000486 INF: FPGA: Recv ZSGSRD 36000
17-03-17 23:03:41.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:41.088 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:03:41.088 -07 000000415 INF: FPGA: Recv ZPIEZORD 31963
17-03-17 23:03:41.098 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:41.098 -07 000000610 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.719 V. Piezo Error = -8.9 V.
17-03-17 23:03:41.098 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.6 um, Read 10 ADC samples: Avg = 36001 (-170.7 uncal um), Error = 0.9 uncal um, Median = 36001 (-170.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35997 (-170.7 uncal um), Max = 36005 (-170.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:03:41.098 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36001, posNoise = 4, negNoise = 4
17-03-17 23:03:41.098 -07 000000610 INF: Z Motor: After move to -0.171582, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:03:41.098 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 23:03:41.098 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:03:41.098 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:03:41.098 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:03:41.098 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:03:41.098 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:03:41.098 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:03:41.098 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 23:03:41.098 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:03:41.098 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:03:41.098 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:03:41.098 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:03:41.098 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:03:41.108 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:03:41.108 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:03:41.108 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:03:41.108 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:03:41.118 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 23:03:41.118 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 23:03:41.118 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 23:03:41.118 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 23:03:41.128 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 466 466 224 224 37658 150\n [Camera]
17-03-17 23:03:41.328 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:03:41.788 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 658
17-03-17 23:03:41.788 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 658
17-03-17 23:03:41.788 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:03:41.788 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:03:41.788 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start.
17-03-17 23:03:41.798 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 658
17-03-17 23:03:41.798 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 658
17-03-17 23:03:41.798 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:03:41.798 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:03:41.798 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) start.
17-03-17 23:03:41.988 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37658 851
17-03-17 23:03:42.028 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:03:42.028 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 70. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1132, R2=1178, Total=2310. Warn if over 250 bubbles per interval.
17-03-17 23:03:42.128 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1001
17-03-17 23:03:42.188 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 23:03:42.188 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 23:03:42.188 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:03:42.198 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:03:42.198 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 23:03:42.198 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 23:03:42.198 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 23:03:42.328 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:03:42.338 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:03:42.338 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 546 ms.
17-03-17 23:03:42.358 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 71, FrontChillerTemperature: 4.018051,
17-03-17 23:03:42.358 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1225
17-03-17 23:03:42.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1225
17-03-17 23:03:42.358 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:03:42.358 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1225
17-03-17 23:03:42.358 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1225
17-03-17 23:03:42.358 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:03:42.368 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:03:42.368 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 23:03:42.368 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:03:42.368 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 23:03:42.548 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1418
17-03-17 23:03:42.548 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:03:42.548 -07 000000610 INF: FPGA: 'CAMDBLSNAP 466 466 224 224 37658 150' command took 2 ms to send, 1416 ms to get response, and 1425 ms overall
17-03-17 23:03:42.548 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:03:42.548 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.732421875, Z-Position -0.171601413326671. ------
17-03-17 23:03:42.558 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:03:42.558 -07 000000623 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17814 mm
17-03-17 23:03:42.558 -07 000000623 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:03:42.558 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:03:42.558 -07 000000475 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 23:03:42.558 -07 000000475 INF: Y Motor: Moving to 61.5726 mm, started at 60.7324 mm, delta = 0.8402 mm
17-03-17 23:03:42.558 -07 000000541 INF: Z Motor: Entering MoveAbsStepped (DAC = 38916, sync = True, waitForSettling = False)
17-03-17 23:03:42.558 -07 000000541 INF: Z Motor: Moving to -0.178146 mm, started at -0.171601 mm, distance = -6.54 um
17-03-17 23:03:42.568 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:03:42.568 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:03:42.568 -07 000000429 INF: FPGA: Recv YRDPOS 124381
17-03-17 23:03:42.578 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 23:03:42.578 -07 000000475 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:03:42.578 -07 000000541 INF: FPGA: Xmit ZDACW 38916\n [Z Motor]
17-03-17 23:03:42.578 -07 000000475 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:03:42.578 -07 000000475 INF: Y Motor: Moving 1344 steps-21
17-03-17 23:03:42.578 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 23:03:42.588 -07 000000486 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:03:42.588 -07 000000541 INF: FPGA: 'ZDACW 38916' command took 1 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 23:03:42.598 -07 000000475 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:03:42.608 -07 000000541 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:03:42.608 -07 000000462 INF: FPGA: Recv ZDACR 38916
17-03-17 23:03:42.618 -07 000000541 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:03:42.618 -07 000000541 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 23:03:42.758 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 390 ms.
17-03-17 23:03:42.758 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 23:03:42.758 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:03:42.758 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 23:03:42.758 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 23:03:42.758 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:03:42.758 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:03:42.768 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:03:42.768 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 23:03:42.768 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 23:03:42.788 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:03:42.788 -07 000000486 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 23:03:42.968 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-17 23:03:42.968 -07 000000475 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 23:03:43.008 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:03:43.018 -07 000000501 INF: FPGA: Recv YRDPOS 126081
17-03-17 23:03:43.018 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 23:03:43.018 -07 000000475 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:03:43.018 -07 000000475 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 23:03:43.018 -07 000000475 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.840 mm, average velocity = 2.127 mm/sec
17-03-17 23:03:43.968 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:03:43.968 -07 000000409 INF: FPGA: Recv YRDPOS 126081
17-03-17 23:03:43.978 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:03:43.978 -07 000000475 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:03:43.998 -07 000000475 INF: Y Motor: After move to 61.572609, error = -0.009621, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:03:43.998 -07 000000475 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:03:43.998 -07 000000475 INF: Y Motor: Moved to 61.5630 after 1437 ms (table move)
17-03-17 23:03:43.998 -07 000000623 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178146 mm (DAC = 38916)
17-03-17 23:03:43.998 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:44.008 -07 000000501 INF: FPGA: Recv ZSGSRD 37029
17-03-17 23:03:44.008 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 23:03:44.008 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:44.008 -07 000000462 INF: FPGA: Recv ZSGSRD 37021
17-03-17 23:03:44.018 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:03:44.018 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:44.018 -07 000000486 INF: FPGA: Recv ZSGSRD 37018
17-03-17 23:03:44.028 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:44.028 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:44.028 -07 000000409 INF: FPGA: Recv ZSGSRD 37026
17-03-17 23:03:44.038 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:44.038 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:44.038 -07 000000415 INF: FPGA: Recv ZSGSRD 37025
17-03-17 23:03:44.048 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:44.048 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:44.048 -07 000000448 INF: FPGA: Recv ZSGSRD 37026
17-03-17 23:03:44.058 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:44.058 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:44.058 -07 000000478 INF: FPGA: Recv ZSGSRD 37021
17-03-17 23:03:44.068 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:44.068 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:44.068 -07 000000551 INF: FPGA: Recv ZSGSRD 37015
17-03-17 23:03:44.078 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:44.078 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:44.078 -07 000000618 INF: FPGA: Recv ZSGSRD 37019
17-03-17 23:03:44.088 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:44.088 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:44.088 -07 000000382 INF: FPGA: Recv ZSGSRD 37017
17-03-17 23:03:44.098 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:44.098 -07 000000623 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:03:44.098 -07 000000448 INF: FPGA: Recv ZPIEZORD 33368
17-03-17 23:03:44.108 -07 000000623 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:44.108 -07 000000623 INF: Z Motor: Piezo is near 51.3 V (nominally 0 to 100 V), expect near 59.4 V, since DAC is at 5.938 V. Piezo Error = -8.1 V.
17-03-17 23:03:44.108 -07 000000623 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.1 um, Read 10 ADC samples: Avg = 37022 (-177.3 uncal um), Error = 0.9 uncal um, Median = 37021 (-177.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 37015 (-177.2 uncal um), Max = 37029 (-177.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 23:03:44.108 -07 000000623 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37022, posNoise = 7, negNoise = 7
17-03-17 23:03:44.108 -07 000000623 INF: Z Motor: After move to -0.178146, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:03:44.108 -07 000000623 INF: Z Motor: Settle wait time = 1440 ms, measure time = 102 ms (allowed 150 ms), total time = 1542 ms
17-03-17 23:03:44.108 -07 000000623 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 23:03:44.158 -07 000000623 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1597 ms
17-03-17 23:03:44.158 -07 000000623 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:03:44.158 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:03:44.158 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:03:44.158 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:03:44.158 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:03:44.158 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:03:44.158 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:03:44.158 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:03:44.158 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:03:44.168 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:03:44.168 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:03:44.178 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 23:03:44.178 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 23:03:44.178 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:03:44.228 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:03:44.428 -07 000000623 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:03:44.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:03:44.428 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:03:44.428 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2182910056, 0x0, 559484976) start.
17-03-17 23:03:44.468 -07 000000415 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:03:44.468 -07 000000547 INF: FPGA: Recv CAMSNAP
17-03-17 23:03:44.468 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 23:03:44.558 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2182910056, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 23:03:44.558 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:03:44.558 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:03:44.558 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 23:03:44.568 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:03:44.568 -07 000000382 INF: Autofocus start
17-03-17 23:03:44.568 -07 000000382 INF: MeasureProfile start
17-03-17 23:03:44.568 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:03:44.578 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:03:44.578 -07 000000623 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:03:44.578 -07 000000382 INF: MeasureProfile done
17-03-17 23:03:44.578 -07 000000382 INF: X=48  Z correction [um]=0.1739867
17-03-17 23:03:44.578 -07 000000382 INF: Autofocus finished
17-03-17 23:03:44.778 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:03:44.778 -07 000000623 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:03:44.778 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56298828125, Z-position -0.178160533923409. ----------
17-03-17 23:03:44.778 -07 000000610 INF: Cycle	71	Tile	3	Exposure Settings		A	466	G	224	T	224	C	466
17-03-17 23:03:44.788 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37466, sync = True, waitForSettling = True)
17-03-17 23:03:44.788 -07 000000610 INF: Z Motor: Moving to -0.171508 mm, started at -0.178161 mm, distance = 6.65 um
17-03-17 23:03:44.788 -07 000000610 INF: FPGA: Xmit ZDACW 37466\n [Z Motor]
17-03-17 23:03:44.788 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 23:03:44.798 -07 000000610 INF: FPGA: 'ZDACW 37466' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:03:44.798 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:03:44.798 -07 000000415 INF: FPGA: Recv ZDACR 37466
17-03-17 23:03:44.808 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:44.808 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:03:44.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:44.958 -07 000000561 INF: FPGA: Recv ZSGSRD 35985
17-03-17 23:03:44.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:03:44.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:44.968 -07 000000501 INF: FPGA: Recv ZSGSRD 35994
17-03-17 23:03:44.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:44.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:44.978 -07 000000382 INF: FPGA: Recv ZSGSRD 35988
17-03-17 23:03:44.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:44.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:44.988 -07 000000501 INF: FPGA: Recv ZSGSRD 35984
17-03-17 23:03:44.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:44.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:44.998 -07 000000478 INF: FPGA: Recv ZSGSRD 35990
17-03-17 23:03:45.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:45.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:45.008 -07 000000576 INF: FPGA: Recv ZSGSRD 35990
17-03-17 23:03:45.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:45.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:45.018 -07 000000618 INF: FPGA: Recv ZSGSRD 35993
17-03-17 23:03:45.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:45.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:45.028 -07 000000627 INF: FPGA: Recv ZSGSRD 35983
17-03-17 23:03:45.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:45.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:45.038 -07 000000576 INF: FPGA: Recv ZSGSRD 35989
17-03-17 23:03:45.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:45.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:45.048 -07 000000482 INF: FPGA: Recv ZSGSRD 35986
17-03-17 23:03:45.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:45.058 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:03:45.058 -07 000000448 INF: FPGA: Recv ZPIEZORD 31993
17-03-17 23:03:45.068 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:45.068 -07 000000610 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.717 V. Piezo Error = -8.8 V.
17-03-17 23:03:45.068 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.5 um, Read 10 ADC samples: Avg = 35988 (-170.6 uncal um), Error = 0.9 uncal um, Median = 35988 (-170.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35983 (-170.6 uncal um), Max = 35994 (-170.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:03:45.068 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35988, posNoise = 6, negNoise = 5
17-03-17 23:03:45.068 -07 000000610 INF: Z Motor: After move to -0.171508, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:03:45.068 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 23:03:45.068 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:03:45.068 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:03:45.068 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:03:45.068 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:03:45.068 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:03:45.068 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:03:45.068 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:03:45.068 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:03:45.068 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:03:45.068 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:03:45.068 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:03:45.068 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:03:45.078 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:03:45.078 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:03:45.078 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 23:03:45.078 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:03:45.078 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 23:03:45.078 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 23:03:45.088 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 23:03:45.088 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:03:45.088 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 466 466 224 224 37643 150\n [Camera]
17-03-17 23:03:45.288 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:03:45.758 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 658
17-03-17 23:03:45.758 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 658
17-03-17 23:03:45.758 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 658
17-03-17 23:03:45.758 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 658
17-03-17 23:03:45.758 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:03:45.758 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:03:45.878 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:03:45.878 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2420328552, 0x0, 391868352) start.
17-03-17 23:03:45.878 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:03:45.878 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 23:03:45.948 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37643 851
17-03-17 23:03:46.098 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1004
17-03-17 23:03:46.248 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2420328552, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 23:03:46.248 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-17 23:03:46.248 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:03:46.248 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 23:03:46.248 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 23:03:46.248 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:03:46.258 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:03:46.258 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 498 ms.
17-03-17 23:03:46.258 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:03:46.258 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 506 ms.
17-03-17 23:03:46.318 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1225
17-03-17 23:03:46.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1225
17-03-17 23:03:46.318 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:03:46.318 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1225
17-03-17 23:03:46.318 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1225
17-03-17 23:03:46.328 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:03:46.328 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:03:46.328 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 23:03:46.338 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:03:46.338 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2455750816, 0x0, 418435064) start.
17-03-17 23:03:46.508 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP 1417
17-03-17 23:03:46.508 -07 000000486 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:03:46.508 -07 000000610 INF: FPGA: 'CAMDBLSNAP 466 466 224 224 37643 150' command took 2 ms to send, 1418 ms to get response, and 1425 ms overall
17-03-17 23:03:46.518 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:03:46.518 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56298828125, Z-Position -0.171517898568828. ------
17-03-17 23:03:46.518 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:03:46.518 -07 000000448 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17787 mm
17-03-17 23:03:46.518 -07 000000448 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:03:46.518 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:03:46.518 -07 000000409 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 23:03:46.518 -07 000000409 INF: Y Motor: Moving to 62.4026 mm, started at 61.5630 mm, delta = 0.8396 mm
17-03-17 23:03:46.518 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 38857, sync = True, waitForSettling = False)
17-03-17 23:03:46.518 -07 000000627 INF: Z Motor: Moving to -0.177876 mm, started at -0.171518 mm, distance = -6.36 um
17-03-17 23:03:46.528 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:03:46.528 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:03:46.528 -07 000000551 INF: FPGA: Recv YRDPOS 126082
17-03-17 23:03:46.538 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:03:46.538 -07 000000409 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:03:46.538 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:03:46.538 -07 000000409 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:03:46.538 -07 000000409 INF: Y Motor: Moving 1343 steps-20
17-03-17 23:03:46.548 -07 000000627 INF: FPGA: Xmit ZDACW 38857\n [Z Motor]
17-03-17 23:03:46.548 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 23:03:46.558 -07 000000409 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:03:46.558 -07 000000627 INF: FPGA: 'ZDACW 38857' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 23:03:46.568 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:03:46.568 -07 000000462 INF: FPGA: Recv ZDACR 38857
17-03-17 23:03:46.578 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:03:46.578 -07 000000627 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-17 23:03:46.718 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 23:03:46.718 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 23:03:46.718 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:03:46.718 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2455750816, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 23:03:46.718 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 23:03:46.718 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:03:46.718 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:03:46.718 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 23:03:46.718 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:03:46.728 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 23:03:46.738 -07 000000475 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:03:46.738 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 23:03:46.928 -07 000000541 INF: FPGA: Recv YMVTILE
17-03-17 23:03:46.928 -07 000000409 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 23:03:46.968 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:03:46.978 -07 000000618 INF: FPGA: Recv YRDPOS 127785
17-03-17 23:03:46.978 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 23:03:46.978 -07 000000409 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:03:46.978 -07 000000409 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 23:03:46.978 -07 000000409 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.840 mm, average velocity = 2.131 mm/sec
17-03-17 23:03:47.028 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:03:47.028 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 70. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1132, R2=1178, Total=2310. Warn if over 250 bubbles per interval.
17-03-17 23:03:47.718 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 71, FrontChillerTemperature: 4.016692,
17-03-17 23:03:47.928 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:03:47.928 -07 000000382 INF: FPGA: Recv YRDPOS 127785
17-03-17 23:03:47.938 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:47.938 -07 000000409 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:03:47.958 -07 000000409 INF: Y Motor: After move to 62.402607, error = -0.007587, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:03:47.958 -07 000000409 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:03:47.958 -07 000000409 INF: Y Motor: Moved to 62.3950 after 1436 ms (table move)
17-03-17 23:03:47.958 -07 000000448 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177876 mm (DAC = 38857)
17-03-17 23:03:47.958 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:47.968 -07 000000502 INF: FPGA: Recv ZSGSRD 36985
17-03-17 23:03:47.968 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 23:03:47.968 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:47.968 -07 000000593 INF: FPGA: Recv ZSGSRD 36981
17-03-17 23:03:47.978 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:03:47.978 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:47.978 -07 000000429 INF: FPGA: Recv ZSGSRD 36975
17-03-17 23:03:47.988 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:47.988 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:47.988 -07 000000415 INF: FPGA: Recv ZSGSRD 36977
17-03-17 23:03:47.998 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:47.998 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:47.998 -07 000000627 INF: FPGA: Recv ZSGSRD 36987
17-03-17 23:03:48.008 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:48.008 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:48.008 -07 000000623 INF: FPGA: Recv ZSGSRD 36980
17-03-17 23:03:48.018 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:48.018 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:48.018 -07 000000501 INF: FPGA: Recv ZSGSRD 36983
17-03-17 23:03:48.028 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:48.038 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:48.038 -07 000000502 INF: FPGA: Recv ZSGSRD 36978
17-03-17 23:03:48.048 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:03:48.068 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:48.068 -07 000000486 INF: FPGA: Recv ZSGSRD 36981
17-03-17 23:03:48.078 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:03:48.078 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:48.078 -07 000000478 INF: FPGA: Recv ZSGSRD 36989
17-03-17 23:03:48.088 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:48.108 -07 000000448 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:03:48.108 -07 000000501 INF: FPGA: Recv ZPIEZORD 33302
17-03-17 23:03:48.118 -07 000000448 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:03:48.118 -07 000000448 INF: Z Motor: Piezo is near 51.1 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.929 V. Piezo Error = -8.2 V.
17-03-17 23:03:48.118 -07 000000448 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.9 um, Read 10 ADC samples: Avg = 36982 (-177.0 uncal um), Error = 0.9 uncal um, Median = 36981 (-177.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36975 (-177.0 uncal um), Max = 36989 (-177.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 23:03:48.118 -07 000000448 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36982, posNoise = 7, negNoise = 7
17-03-17 23:03:48.118 -07 000000448 INF: Z Motor: After move to -0.177876, error = -0.000028, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:03:48.118 -07 000000448 INF: Z Motor: Settle wait time = 1439 ms, measure time = 152 ms (allowed 150 ms), total time = 1591 ms
17-03-17 23:03:48.118 -07 000000448 INF: Z Motor: Warning: Actual position measuring time = 152 ms, longer than max expected time of 150 ms
17-03-17 23:03:48.118 -07 000000448 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1597 ms
17-03-17 23:03:48.118 -07 000000448 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:03:48.118 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:03:48.118 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:03:48.118 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:03:48.118 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:03:48.118 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:03:48.118 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:03:48.118 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:03:48.118 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:03:48.128 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:03:48.128 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:03:48.138 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 23:03:48.138 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 23:03:48.138 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:03:48.188 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:03:48.388 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:03:48.388 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:03:48.388 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:03:48.388 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2508048144, 0x0, 559484976) start.
17-03-17 23:03:48.428 -07 000000623 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:03:48.428 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-17 23:03:48.428 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 23:03:48.518 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2508048144, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 23:03:48.518 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:03:48.518 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:03:48.518 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 23:03:48.528 -07 000000576 INF: Autofocus start
17-03-17 23:03:48.528 -07 000000576 INF: MeasureProfile start
17-03-17 23:03:48.528 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:03:48.528 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:03:48.538 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:03:48.538 -07 000000593 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:03:48.538 -07 000000576 INF: MeasureProfile done
17-03-17 23:03:48.538 -07 000000576 INF: X=0  Z correction [um]=-0.0713522
17-03-17 23:03:48.538 -07 000000576 INF: Autofocus finished
17-03-17 23:03:48.738 -07 000000551 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:03:48.738 -07 000000593 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:03:48.738 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39501953125, Z-position -0.177903565437739. ----------
17-03-17 23:03:48.738 -07 000000610 INF: Cycle	71	Tile	4	Exposure Settings		A	466	G	224	T	224	C	466
17-03-17 23:03:48.748 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37354, sync = True, waitForSettling = True)
17-03-17 23:03:48.748 -07 000000610 INF: Z Motor: Moving to -0.170996 mm, started at -0.177904 mm, distance = 6.91 um
17-03-17 23:03:48.748 -07 000000610 INF: FPGA: Xmit ZDACW 37354\n [Z Motor]
17-03-17 23:03:48.748 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 23:03:48.758 -07 000000610 INF: FPGA: 'ZDACW 37354' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:48.758 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:03:48.758 -07 000000415 INF: FPGA: Recv ZDACR 37354
17-03-17 23:03:48.768 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:48.768 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:03:48.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:48.918 -07 000000618 INF: FPGA: Recv ZSGSRD 35909
17-03-17 23:03:48.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:03:48.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:48.928 -07 000000462 INF: FPGA: Recv ZSGSRD 35905
17-03-17 23:03:48.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 2 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:48.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:48.938 -07 000000475 INF: FPGA: Recv ZSGSRD 35913
17-03-17 23:03:48.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:48.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:48.948 -07 000000382 INF: FPGA: Recv ZSGSRD 35905
17-03-17 23:03:48.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:48.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:48.958 -07 000000482 INF: FPGA: Recv ZSGSRD 35906
17-03-17 23:03:48.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:48.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:48.968 -07 000000501 INF: FPGA: Recv ZSGSRD 35912
17-03-17 23:03:48.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:48.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:48.978 -07 000000462 INF: FPGA: Recv ZSGSRD 35907
17-03-17 23:03:48.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:48.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:48.988 -07 000000475 INF: FPGA: Recv ZSGSRD 35907
17-03-17 23:03:48.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:48.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:48.998 -07 000000486 INF: FPGA: Recv ZSGSRD 35906
17-03-17 23:03:49.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:49.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:49.008 -07 000000482 INF: FPGA: Recv ZSGSRD 35906
17-03-17 23:03:49.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:49.018 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:03:49.018 -07 000000501 INF: FPGA: Recv ZPIEZORD 31894
17-03-17 23:03:49.028 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:49.028 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.700 V. Piezo Error = -8.9 V.
17-03-17 23:03:49.028 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.0 um, Read 10 ADC samples: Avg = 35908 (-170.1 uncal um), Error = 0.9 uncal um, Median = 35906 (-170.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35905 (-170.1 uncal um), Max = 35913 (-170.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 23:03:49.028 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35908, posNoise = 5, negNoise = 3
17-03-17 23:03:49.028 -07 000000610 INF: Z Motor: After move to -0.170996, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:03:49.028 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 23:03:49.028 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:03:49.028 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:03:49.028 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:03:49.028 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:03:49.028 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:03:49.028 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:03:49.028 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:03:49.028 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:03:49.028 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:03:49.028 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:03:49.028 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 23:03:49.028 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:03:49.038 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:03:49.038 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:03:49.038 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:03:49.038 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:03:49.038 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 23:03:49.048 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 23:03:49.048 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 23:03:49.048 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:03:49.048 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 466 466 224 224 37530 150\n [Camera]
17-03-17 23:03:49.248 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:03:49.708 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 658
17-03-17 23:03:49.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 658
17-03-17 23:03:49.718 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:03:49.718 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 658
17-03-17 23:03:49.718 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 658
17-03-17 23:03:49.718 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:03:49.728 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:03:49.728 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 23:03:49.728 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:03:49.728 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2602438304, 0x0, 418435064) start.
17-03-17 23:03:49.908 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37530 854
17-03-17 23:03:50.058 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1001
17-03-17 23:03:50.098 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2602438304, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 23:03:50.098 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 23:03:50.098 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:03:50.098 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 23:03:50.098 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 23:03:50.098 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:03:50.098 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:03:50.108 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:03:50.108 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 23:03:50.108 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 23:03:50.278 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1225
17-03-17 23:03:50.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1225
17-03-17 23:03:50.278 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:03:50.278 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:03:50.278 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1225
17-03-17 23:03:50.278 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 23:03:50.278 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1225
17-03-17 23:03:50.278 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:03:50.288 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:03:50.288 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2197586136, 0x0, 418435064) start.
17-03-17 23:03:50.468 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1418
17-03-17 23:03:50.468 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:03:50.468 -07 000000610 INF: FPGA: 'CAMDBLSNAP 466 466 224 224 37530 150' command took 2 ms to send, 1417 ms to get response, and 1425 ms overall
17-03-17 23:03:50.588 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:03:50.588 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39501953125, Z-Position -0.171003961597487. ------
17-03-17 23:03:50.588 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:03:50.588 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17753 mm
17-03-17 23:03:50.588 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:03:50.588 -07 000000547 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 23:03:50.588 -07 000000547 INF: Y Motor: Moving to 63.2326 mm, started at 62.3950 mm, delta = 0.8376 mm
17-03-17 23:03:50.588 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:03:50.588 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 38781, sync = True, waitForSettling = False)
17-03-17 23:03:50.588 -07 000000462 INF: Z Motor: Moving to -0.177528 mm, started at -0.171004 mm, distance = -6.52 um
17-03-17 23:03:50.598 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:03:50.598 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:03:50.598 -07 000000429 INF: FPGA: Recv YRDPOS 127785
17-03-17 23:03:50.608 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 23:03:50.608 -07 000000547 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:03:50.608 -07 000000547 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:03:50.608 -07 000000547 INF: Y Motor: Moving 1340 steps-16
17-03-17 23:03:50.608 -07 000000462 INF: FPGA: Xmit ZDACW 38781\n [Z Motor]
17-03-17 23:03:50.608 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 23:03:50.618 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:03:50.618 -07 000000462 INF: FPGA: 'ZDACW 38781' command took 1 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 23:03:50.628 -07 000000547 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:03:50.638 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:03:50.638 -07 000000482 INF: FPGA: Recv ZDACR 38781
17-03-17 23:03:50.648 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:03:50.648 -07 000000462 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 23:03:50.668 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2197586136, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 23:03:50.668 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 23:03:50.668 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:03:50.668 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 23:03:50.668 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 23:03:50.668 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:03:50.668 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:03:50.668 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:03:50.668 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 23:03:50.678 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 23:03:50.818 -07 000000482 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:03:50.818 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 23:03:50.998 -07 000000623 INF: FPGA: Recv YMVTILE
17-03-17 23:03:50.998 -07 000000547 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 23:03:51.038 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:03:51.048 -07 000000478 INF: FPGA: Recv YRDPOS 129481
17-03-17 23:03:51.048 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 23:03:51.048 -07 000000547 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:03:51.048 -07 000000547 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 23:03:51.048 -07 000000547 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.110 mm/sec
17-03-17 23:03:51.998 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:03:51.998 -07 000000448 INF: FPGA: Recv YRDPOS 129482
17-03-17 23:03:52.008 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:03:52.008 -07 000000547 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:03:52.028 -07 000000547 INF: Y Motor: After move to 63.232609, error = -0.008976, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:03:52.028 -07 000000547 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 23:03:52.028 -07 000000547 INF: Y Motor: Moved to 63.2236 after 1438 ms (table move)
17-03-17 23:03:52.028 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:03:52.028 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 70. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1132, R2=1178, Total=2310. Warn if over 250 bubbles per interval.
17-03-17 23:03:52.028 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177528 mm (DAC = 38781)
17-03-17 23:03:52.028 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:52.038 -07 000000482 INF: FPGA: Recv ZSGSRD 36922
17-03-17 23:03:52.048 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:03:52.048 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:52.048 -07 000000475 INF: FPGA: Recv ZSGSRD 36925
17-03-17 23:03:52.058 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:52.058 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:52.058 -07 000000415 INF: FPGA: Recv ZSGSRD 36926
17-03-17 23:03:52.068 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:52.068 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:52.068 -07 000000561 INF: FPGA: Recv ZSGSRD 36932
17-03-17 23:03:52.078 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:52.078 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:52.078 -07 000000478 INF: FPGA: Recv ZSGSRD 36929
17-03-17 23:03:52.088 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:52.088 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:52.088 -07 000000627 INF: FPGA: Recv ZSGSRD 36931
17-03-17 23:03:52.098 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:52.098 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:52.098 -07 000000429 INF: FPGA: Recv ZSGSRD 36925
17-03-17 23:03:52.108 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:52.108 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:52.108 -07 000000561 INF: FPGA: Recv ZSGSRD 36926
17-03-17 23:03:52.118 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:52.118 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:52.118 -07 000000409 INF: FPGA: Recv ZSGSRD 36923
17-03-17 23:03:52.128 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:52.128 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:52.128 -07 000000382 INF: FPGA: Recv ZSGSRD 36922
17-03-17 23:03:52.138 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:52.138 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:03:52.138 -07 000000541 INF: FPGA: Recv ZPIEZORD 33266
17-03-17 23:03:52.148 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:52.148 -07 000000502 INF: Z Motor: Piezo is near 51.1 V (nominally 0 to 100 V), expect near 59.2 V, since DAC is at 5.918 V. Piezo Error = -8.1 V.
17-03-17 23:03:52.148 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.5 um, Read 10 ADC samples: Avg = 36926 (-176.7 uncal um), Error = 0.9 uncal um, Median = 36926 (-176.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36922 (-176.6 uncal um), Max = 36932 (-176.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:03:52.148 -07 000000502 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36926, posNoise = 6, negNoise = 4
17-03-17 23:03:52.148 -07 000000502 INF: Z Motor: After move to -0.177528, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:03:52.148 -07 000000502 INF: Z Motor: Settle wait time = 1440 ms, measure time = 111 ms (allowed 150 ms), total time = 1551 ms
17-03-17 23:03:52.148 -07 000000502 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 23:03:52.188 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1594 ms
17-03-17 23:03:52.188 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:03:52.188 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:03:52.188 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:03:52.198 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:03:52.198 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:03:52.198 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:03:52.198 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:03:52.198 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 23:03:52.198 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:03:52.208 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 5 ms.
17-03-17 23:03:52.208 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:03:52.208 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-17 23:03:52.208 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 23:03:52.218 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:03:52.258 -07 000000623 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:03:52.458 -07 000000475 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:03:52.458 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:03:52.458 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:03:52.458 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 23:03:52.498 -07 000000576 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:03:52.498 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-17 23:03:52.498 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 23:03:52.578 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 23:03:52.578 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:03:52.578 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:03:52.578 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 23:03:52.598 -07 000000409 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:03:52.598 -07 000000541 INF: Autofocus start
17-03-17 23:03:52.598 -07 000000541 INF: MeasureProfile start
17-03-17 23:03:52.598 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:03:52.608 -07 000000409 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:03:52.608 -07 000000409 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:03:52.618 -07 000000541 INF: MeasureProfile done
17-03-17 23:03:52.618 -07 000000541 INF: X=16  Z correction [um]=0.01042744
17-03-17 23:03:52.618 -07 000000541 INF: Autofocus finished
17-03-17 23:03:52.808 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:03:52.808 -07 000000409 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:03:52.808 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.2236328125, Z-position -0.1775438095578. ----------
17-03-17 23:03:52.808 -07 000000610 INF: Cycle	71	Tile	5	Exposure Settings		A	466	G	224	T	224	C	466
17-03-17 23:03:52.818 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37296, sync = True, waitForSettling = True)
17-03-17 23:03:52.818 -07 000000610 INF: Z Motor: Moving to -0.170730 mm, started at -0.177544 mm, distance = 6.81 um
17-03-17 23:03:52.818 -07 000000610 INF: FPGA: Xmit ZDACW 37296\n [Z Motor]
17-03-17 23:03:52.818 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 23:03:52.828 -07 000000610 INF: FPGA: 'ZDACW 37296' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:03:52.828 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:03:52.828 -07 000000429 INF: FPGA: Recv ZDACR 37296
17-03-17 23:03:52.838 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:52.838 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:03:52.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:52.988 -07 000000448 INF: FPGA: Recv ZSGSRD 35870
17-03-17 23:03:52.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:03:52.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:52.998 -07 000000501 INF: FPGA: Recv ZSGSRD 35862
17-03-17 23:03:53.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:53.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:53.008 -07 000000448 INF: FPGA: Recv ZSGSRD 35874
17-03-17 23:03:53.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:53.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:53.018 -07 000000475 INF: FPGA: Recv ZSGSRD 35864
17-03-17 23:03:53.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:53.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:53.028 -07 000000429 INF: FPGA: Recv ZSGSRD 35858
17-03-17 23:03:53.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:53.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:53.038 -07 000000415 INF: FPGA: Recv ZSGSRD 35867
17-03-17 23:03:53.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:53.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:53.048 -07 000000576 INF: FPGA: Recv ZSGSRD 35867
17-03-17 23:03:53.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:53.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:53.058 -07 000000627 INF: FPGA: Recv ZSGSRD 35868
17-03-17 23:03:53.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:53.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:53.068 -07 000000541 INF: FPGA: Recv ZSGSRD 35866
17-03-17 23:03:53.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:53.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:53.088 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 71, FrontChillerTemperature: 4.011254,
17-03-17 23:03:53.088 -07 000000627 INF: FPGA: Recv ZSGSRD 35876
17-03-17 23:03:53.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:03:53.118 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:03:53.118 -07 000000486 INF: FPGA: Recv ZPIEZORD 31824
17-03-17 23:03:53.128 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:03:53.128 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.691 V. Piezo Error = -8.9 V.
17-03-17 23:03:53.128 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.7 um, Read 10 ADC samples: Avg = 35867 (-169.9 uncal um), Error = 0.9 uncal um, Median = 35867 (-169.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 35858 (-169.8 uncal um), Max = 35876 (-169.9 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 23:03:53.128 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35867, posNoise = 9, negNoise = 9
17-03-17 23:03:53.128 -07 000000610 INF: Z Motor: After move to -0.170730, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:03:53.128 -07 000000610 INF: Z Motor: MoveAbsStepped took 310 ms)
17-03-17 23:03:53.128 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:03:53.128 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:03:53.128 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:03:53.128 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:03:53.128 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:03:53.128 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:03:53.128 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:03:53.128 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:03:53.128 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:03:53.128 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:03:53.128 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:03:53.128 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:03:53.138 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:03:53.138 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:03:53.138 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:03:53.138 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:03:53.148 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 23:03:53.148 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:03:53.148 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 23:03:53.148 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:03:53.158 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 466 466 224 224 37473 150\n [Camera]
17-03-17 23:03:53.358 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:03:53.818 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 658
17-03-17 23:03:53.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 658
17-03-17 23:03:53.818 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:03:53.818 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 658
17-03-17 23:03:53.818 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 658
17-03-17 23:03:53.828 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:03:53.828 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:03:53.828 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 23:03:53.828 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:03:53.828 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 23:03:54.008 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37473 851
17-03-17 23:03:54.158 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1001
17-03-17 23:03:54.218 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 23:03:54.218 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 23:03:54.218 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:03:54.218 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:03:54.218 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 23:03:54.218 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 23:03:54.218 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 23:03:54.218 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:03:54.228 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:03:54.228 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 23:03:54.388 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1225
17-03-17 23:03:54.388 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1225
17-03-17 23:03:54.388 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:03:54.388 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1225
17-03-17 23:03:54.388 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1225
17-03-17 23:03:54.388 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:03:54.398 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:03:54.398 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 23:03:54.398 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:03:54.398 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 23:03:54.578 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP 1418
17-03-17 23:03:54.578 -07 000000623 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:03:54.578 -07 000000610 INF: FPGA: 'CAMDBLSNAP 466 466 224 224 37473 150' command took 2 ms to send, 1415 ms to get response, and 1431 ms overall
17-03-17 23:03:54.578 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:03:54.578 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.2236328125, Z-Position -0.170740568899675. ------
17-03-17 23:03:54.578 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:03:54.588 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17707 mm
17-03-17 23:03:54.588 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:03:54.588 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:03:54.588 -07 000000415 INF: Z Motor: Entering MoveAbsStepped (DAC = 38681, sync = True, waitForSettling = False)
17-03-17 23:03:54.588 -07 000000415 INF: Z Motor: Moving to -0.177070 mm, started at -0.170741 mm, distance = -6.33 um
17-03-17 23:03:54.588 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 23:03:54.588 -07 000000541 INF: Y Motor: Moving to 64.0626 mm, started at 63.2236 mm, delta = 0.8390 mm
17-03-17 23:03:54.598 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:03:54.598 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:03:54.598 -07 000000475 INF: FPGA: Recv YRDPOS 129482
17-03-17 23:03:54.608 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 23:03:54.608 -07 000000541 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:03:54.608 -07 000000541 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:03:54.608 -07 000000541 INF: Y Motor: Moving 1342 steps-19
17-03-17 23:03:54.608 -07 000000415 INF: FPGA: Xmit ZDACW 38681\n [Z Motor]
17-03-17 23:03:54.608 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 23:03:54.618 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:03:54.618 -07 000000415 INF: FPGA: 'ZDACW 38681' command took 1 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 23:03:54.628 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:03:54.638 -07 000000415 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:03:54.638 -07 000000627 INF: FPGA: Recv ZDACR 38681
17-03-17 23:03:54.648 -07 000000415 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:03:54.648 -07 000000415 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-17 23:03:54.798 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 23:03:54.798 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 23:03:54.798 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:03:54.798 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 23:03:54.798 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 23:03:54.798 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:03:54.798 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:03:54.798 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 23:03:54.798 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:03:54.808 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-17 23:03:54.818 -07 000000623 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:03:54.818 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 23:03:54.998 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 23:03:54.998 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 23:03:55.038 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:03:55.048 -07 000000448 INF: FPGA: Recv YRDPOS 131187
17-03-17 23:03:55.048 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 23:03:55.048 -07 000000541 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:03:55.048 -07 000000541 INF: Y Motor: Position error before settling (table move) = -13 encoder counts (-0.006 mm)
17-03-17 23:03:55.048 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.113 mm/sec
17-03-17 23:03:55.998 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:03:55.998 -07 000000478 INF: FPGA: Recv YRDPOS 131187
17-03-17 23:03:56.008 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:56.008 -07 000000541 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:03:56.028 -07 000000541 INF: Y Motor: After move to 64.062607, error = -0.006454, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:03:56.028 -07 000000541 INF: Y Motor: Position error after settling (table move) = -13 encoder counts (-0.006 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:03:56.028 -07 000000541 INF: Y Motor: Moved to 64.0562 after 1438 ms (table move)
17-03-17 23:03:56.028 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177070 mm (DAC = 38681)
17-03-17 23:03:56.028 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:56.038 -07 000000547 INF: FPGA: Recv ZSGSRD 36859
17-03-17 23:03:56.038 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:03:56.038 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:56.038 -07 000000448 INF: FPGA: Recv ZSGSRD 36850
17-03-17 23:03:56.048 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:56.048 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:56.048 -07 000000462 INF: FPGA: Recv ZSGSRD 36854
17-03-17 23:03:56.058 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:56.058 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:56.058 -07 000000409 INF: FPGA: Recv ZSGSRD 36858
17-03-17 23:03:56.068 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:56.068 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:56.068 -07 000000627 INF: FPGA: Recv ZSGSRD 36856
17-03-17 23:03:56.078 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:56.078 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:56.078 -07 000000475 INF: FPGA: Recv ZSGSRD 36858
17-03-17 23:03:56.088 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:56.088 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:56.088 -07 000000618 INF: FPGA: Recv ZSGSRD 36846
17-03-17 23:03:56.098 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:56.098 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:56.098 -07 000000576 INF: FPGA: Recv ZSGSRD 36850
17-03-17 23:03:56.108 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:56.108 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:56.108 -07 000000429 INF: FPGA: Recv ZSGSRD 36845
17-03-17 23:03:56.118 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:56.118 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:56.118 -07 000000482 INF: FPGA: Recv ZSGSRD 36856
17-03-17 23:03:56.128 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:56.128 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:03:56.128 -07 000000547 INF: FPGA: Recv ZPIEZORD 33172
17-03-17 23:03:56.138 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:56.138 -07 000000382 INF: Z Motor: Piezo is near 50.9 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.902 V. Piezo Error = -8.2 V.
17-03-17 23:03:56.138 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.1 um, Read 10 ADC samples: Avg = 36853 (-176.2 uncal um), Error = 0.9 uncal um, Median = 36855 (-176.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36845 (-176.1 uncal um), Max = 36859 (-176.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 23:03:56.138 -07 000000382 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36853, posNoise = 6, negNoise = 8
17-03-17 23:03:56.138 -07 000000382 INF: Z Motor: After move to -0.177070, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:03:56.138 -07 000000382 INF: Z Motor: Settle wait time = 1441 ms, measure time = 103 ms (allowed 150 ms), total time = 1544 ms
17-03-17 23:03:56.138 -07 000000382 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 23:03:56.188 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1599 ms
17-03-17 23:03:56.188 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:03:56.198 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:03:56.198 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:03:56.208 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:03:56.208 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:03:56.208 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:03:56.208 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:03:56.208 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:03:56.208 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:03:56.218 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 23:03:56.218 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:03:56.228 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 23:03:56.228 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-17 23:03:56.228 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:03:56.278 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:03:56.478 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:03:56.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:03:56.478 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:03:56.478 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2503642840, 0x0, 559484976) start.
17-03-17 23:03:56.518 -07 000000541 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:03:56.518 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-17 23:03:56.518 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 285 ms overall
17-03-17 23:03:56.598 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2503642840, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 23:03:56.598 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:03:56.598 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:03:56.598 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 23:03:56.618 -07 000000547 INF: Autofocus start
17-03-17 23:03:56.618 -07 000000547 INF: MeasureProfile start
17-03-17 23:03:56.618 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:03:56.618 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:03:56.628 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:03:56.628 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:03:56.628 -07 000000547 INF: MeasureProfile done
17-03-17 23:03:56.628 -07 000000547 INF: X=32  Z correction [um]=0.09220707
17-03-17 23:03:56.628 -07 000000547 INF: Autofocus finished
17-03-17 23:03:56.828 -07 000000486 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:03:56.828 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:03:56.828 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05615234375, Z-position -0.177074842071451. ----------
17-03-17 23:03:56.838 -07 000000610 INF: Cycle	71	Tile	6	Exposure Settings		A	466	G	224	T	224	C	466
17-03-17 23:03:56.838 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37214, sync = True, waitForSettling = True)
17-03-17 23:03:56.838 -07 000000610 INF: Z Motor: Moving to -0.170355 mm, started at -0.177075 mm, distance = 6.72 um
17-03-17 23:03:56.838 -07 000000610 INF: FPGA: Xmit ZDACW 37214\n [Z Motor]
17-03-17 23:03:56.838 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 23:03:56.848 -07 000000610 INF: FPGA: 'ZDACW 37214' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:03:56.848 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:03:56.848 -07 000000429 INF: FPGA: Recv ZDACR 37214
17-03-17 23:03:56.858 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:56.858 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:03:57.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:57.008 -07 000000382 INF: FPGA: Recv ZSGSRD 35814
17-03-17 23:03:57.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:57.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:57.018 -07 000000541 INF: FPGA: Recv ZSGSRD 35810
17-03-17 23:03:57.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:57.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:57.028 -07 000000415 INF: FPGA: Recv ZSGSRD 35812
17-03-17 23:03:57.028 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:03:57.028 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 70. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1132, R2=1178, Total=2310. Warn if over 250 bubbles per interval.
17-03-17 23:03:57.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:57.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:57.038 -07 000000551 INF: FPGA: Recv ZSGSRD 35804
17-03-17 23:03:57.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:57.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:57.048 -07 000000561 INF: FPGA: Recv ZSGSRD 35809
17-03-17 23:03:57.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:57.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:57.058 -07 000000623 INF: FPGA: Recv ZSGSRD 35812
17-03-17 23:03:57.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:57.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:57.068 -07 000000382 INF: FPGA: Recv ZSGSRD 35811
17-03-17 23:03:57.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:57.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:57.078 -07 000000429 INF: FPGA: Recv ZSGSRD 35813
17-03-17 23:03:57.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:57.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:57.088 -07 000000502 INF: FPGA: Recv ZSGSRD 35811
17-03-17 23:03:57.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:57.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:03:57.098 -07 000000593 INF: FPGA: Recv ZSGSRD 35802
17-03-17 23:03:57.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:57.108 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:03:57.108 -07 000000627 INF: FPGA: Recv ZPIEZORD 31755
17-03-17 23:03:57.118 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:03:57.118 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.678 V. Piezo Error = -8.9 V.
17-03-17 23:03:57.118 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.4 um, Read 10 ADC samples: Avg = 35810 (-169.5 uncal um), Error = 0.9 uncal um, Median = 35811 (-169.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35802 (-169.4 uncal um), Max = 35814 (-169.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 23:03:57.118 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35810, posNoise = 4, negNoise = 8
17-03-17 23:03:57.118 -07 000000610 INF: Z Motor: After move to -0.170355, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:03:57.118 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 23:03:57.118 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:03:57.118 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:03:57.118 -07 000000409 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:03:57.118 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:03:57.118 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:03:57.118 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:03:57.118 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:03:57.118 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:03:57.118 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 23:03:57.118 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:03:57.118 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 23:03:57.118 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:03:57.128 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:03:57.128 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:03:57.128 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 23:03:57.128 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:03:57.138 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 23:03:57.138 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:03:57.138 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 23:03:57.138 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:03:57.138 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 466 466 224 224 37391 150\n [Camera]
17-03-17 23:03:57.338 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:03:57.798 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 658
17-03-17 23:03:57.798 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 658
17-03-17 23:03:57.808 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:03:57.808 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:03:57.808 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 23:03:57.918 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 658
17-03-17 23:03:57.918 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 658
17-03-17 23:03:57.928 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:03:57.928 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:03:57.928 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 23:03:57.998 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37391 851
17-03-17 23:03:58.148 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1001
17-03-17 23:03:58.198 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 23:03:58.198 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 23:03:58.198 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:03:58.198 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:03:58.198 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 23:03:58.318 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 23:03:58.318 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 23:03:58.318 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:03:58.328 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 23:03:58.328 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 23:03:58.368 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1225
17-03-17 23:03:58.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1225
17-03-17 23:03:58.368 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:03:58.368 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1225
17-03-17 23:03:58.368 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1225
17-03-17 23:03:58.368 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:03:58.378 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:03:58.378 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 23:03:58.378 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:03:58.378 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 23:03:58.478 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 71, FrontChillerTemperature: 3.973092,
17-03-17 23:03:58.558 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1418
17-03-17 23:03:58.558 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:03:58.558 -07 000000610 INF: FPGA: 'CAMDBLSNAP 466 466 224 224 37391 150' command took 2 ms to send, 1417 ms to get response, and 1425 ms overall
17-03-17 23:03:58.568 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:03:58.568 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05615234375, Z-Position -0.170374388807595. ------
17-03-17 23:03:58.568 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17686 mm
17-03-17 23:03:58.568 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:03:58.568 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:03:58.568 -07 000000429 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 23:03:58.568 -07 000000429 INF: Y Motor: Moving to 64.8926 mm, started at 64.0562 mm, delta = 0.8365 mm
17-03-17 23:03:58.568 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:03:58.568 -07 000000409 INF: Z Motor: Entering MoveAbsStepped (DAC = 38635, sync = True, waitForSettling = False)
17-03-17 23:03:58.568 -07 000000409 INF: Z Motor: Moving to -0.176860 mm, started at -0.170374 mm, distance = -6.49 um
17-03-17 23:03:58.578 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:03:58.578 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:03:58.578 -07 000000551 INF: FPGA: Recv YRDPOS 131188
17-03-17 23:03:58.588 -07 000000547 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:03:58.588 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 23:03:58.588 -07 000000429 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:03:58.588 -07 000000429 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:03:58.588 -07 000000429 INF: Y Motor: Moving 1338 steps-13
17-03-17 23:03:58.598 -07 000000409 INF: FPGA: Xmit ZDACW 38635\n [Z Motor]
17-03-17 23:03:58.598 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 23:03:58.608 -07 000000429 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:03:58.608 -07 000000409 INF: FPGA: 'ZDACW 38635' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 23:03:58.618 -07 000000409 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:03:58.618 -07 000000478 INF: FPGA: Recv ZDACR 38635
17-03-17 23:03:58.628 -07 000000409 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:03:58.628 -07 000000409 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 23:03:58.768 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 23:03:58.768 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 23:03:58.768 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:03:58.768 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:03:58.768 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 23:03:58.768 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 23:03:58.768 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:03:58.768 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:03:58.768 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 23:03:58.778 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 23:03:58.788 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:03:58.788 -07 000000547 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 215 ms overall
17-03-17 23:03:58.978 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-17 23:03:58.978 -07 000000429 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 395 ms overall
17-03-17 23:03:59.028 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:03:59.028 -07 000000486 INF: FPGA: Recv YRDPOS 132870
17-03-17 23:03:59.038 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:03:59.038 -07 000000429 INF: Y Motor: Encoder = 132870 = motor step 103804.7 = 64.8779 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:03:59.038 -07 000000429 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 23:03:59.038 -07 000000429 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.836 mm, average velocity = 2.118 mm/sec
17-03-17 23:03:59.988 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:03:59.988 -07 000000501 INF: FPGA: Recv YRDPOS 132871
17-03-17 23:03:59.998 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:03:59.998 -07 000000429 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:04:00.018 -07 000000429 INF: Y Motor: After move to 64.892609, error = -0.014191, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:04:00.018 -07 000000429 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 23:04:00.018 -07 000000429 INF: Y Motor: Moved to 64.8784 after 1448 ms (table move)
17-03-17 23:04:00.018 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176860 mm (DAC = 38635)
17-03-17 23:04:00.018 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:00.028 -07 000000547 INF: FPGA: Recv ZSGSRD 36823
17-03-17 23:04:00.028 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 23:04:00.028 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:00.028 -07 000000576 INF: FPGA: Recv ZSGSRD 36815
17-03-17 23:04:00.038 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:04:00.038 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:00.038 -07 000000502 INF: FPGA: Recv ZSGSRD 36823
17-03-17 23:04:00.048 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:00.048 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:00.048 -07 000000561 INF: FPGA: Recv ZSGSRD 36824
17-03-17 23:04:00.058 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:00.058 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:00.058 -07 000000551 INF: FPGA: Recv ZSGSRD 36818
17-03-17 23:04:00.068 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:00.068 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:00.068 -07 000000448 INF: FPGA: Recv ZSGSRD 36811
17-03-17 23:04:00.078 -07 000000382 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:00.078 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:00.078 -07 000000486 INF: FPGA: Recv ZSGSRD 36819
17-03-17 23:04:00.088 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:00.088 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:00.088 -07 000000576 INF: FPGA: Recv ZSGSRD 36819
17-03-17 23:04:00.098 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:00.098 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:00.098 -07 000000593 INF: FPGA: Recv ZSGSRD 36819
17-03-17 23:04:00.108 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:00.108 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:00.108 -07 000000623 INF: FPGA: Recv ZSGSRD 36812
17-03-17 23:04:00.118 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:00.118 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:04:00.118 -07 000000618 INF: FPGA: Recv ZPIEZORD 33140
17-03-17 23:04:00.128 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:00.128 -07 000000382 INF: Z Motor: Piezo is near 50.8 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.895 V. Piezo Error = -8.2 V.
17-03-17 23:04:00.128 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.9 um, Read 10 ADC samples: Avg = 36818 (-176.0 uncal um), Error = 0.9 uncal um, Median = 36819 (-176.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36811 (-175.9 uncal um), Max = 36824 (-176.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 23:04:00.128 -07 000000382 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36818, posNoise = 6, negNoise = 7
17-03-17 23:04:00.128 -07 000000382 INF: Z Motor: After move to -0.176860, error = 0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:04:00.128 -07 000000382 INF: Z Motor: Settle wait time = 1450 ms, measure time = 101 ms (allowed 150 ms), total time = 1551 ms
17-03-17 23:04:00.128 -07 000000382 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 23:04:00.178 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1604 ms
17-03-17 23:04:00.178 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:04:00.178 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:04:00.178 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:04:00.178 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:04:00.178 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:04:00.178 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:04:00.178 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:04:00.178 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:04:00.178 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:04:00.188 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 23:04:00.188 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:04:00.188 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-17 23:04:00.188 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 23:04:00.198 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:04:00.238 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:04:00.438 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:04:00.438 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:04:00.438 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:04:00.448 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2503642840, 0x0, 559484976) start.
17-03-17 23:04:00.478 -07 000000627 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:04:00.478 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-17 23:04:00.478 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 287 ms overall
17-03-17 23:04:00.558 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2503642840, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 23:04:00.558 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:04:00.558 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 23:04:00.558 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 23:04:00.578 -07 000000382 INF: Autofocus start
17-03-17 23:04:00.578 -07 000000382 INF: MeasureProfile start
17-03-17 23:04:00.578 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:04:00.578 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:04:00.588 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:04:00.588 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:04:00.588 -07 000000382 INF: MeasureProfile done
17-03-17 23:04:00.588 -07 000000382 INF: X=-48  Z correction [um]=-0.3191189
17-03-17 23:04:00.588 -07 000000382 INF: Autofocus finished
17-03-17 23:04:00.788 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:04:00.788 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:04:00.788 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87841796875, Z-position -0.17684999464649. ----------
17-03-17 23:04:00.788 -07 000000610 INF: Cycle	71	Tile	7	Exposure Settings		A	466	G	224	T	224	C	466
17-03-17 23:04:00.798 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37078, sync = True, waitForSettling = True)
17-03-17 23:04:00.798 -07 000000610 INF: Z Motor: Moving to -0.169732 mm, started at -0.176850 mm, distance = 7.12 um
17-03-17 23:04:00.798 -07 000000610 INF: FPGA: Xmit ZDACW 37078\n [Z Motor]
17-03-17 23:04:00.798 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 23:04:00.808 -07 000000610 INF: FPGA: 'ZDACW 37078' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:04:00.808 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:04:00.808 -07 000000448 INF: FPGA: Recv ZDACR 37078
17-03-17 23:04:00.818 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:00.818 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:04:00.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:00.968 -07 000000576 INF: FPGA: Recv ZSGSRD 35710
17-03-17 23:04:00.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:04:00.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:00.978 -07 000000547 INF: FPGA: Recv ZSGSRD 35712
17-03-17 23:04:00.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:00.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:00.988 -07 000000627 INF: FPGA: Recv ZSGSRD 35712
17-03-17 23:04:00.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:00.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:00.998 -07 000000415 INF: FPGA: Recv ZSGSRD 35702
17-03-17 23:04:01.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:01.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:01.008 -07 000000501 INF: FPGA: Recv ZSGSRD 35713
17-03-17 23:04:01.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:01.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:01.018 -07 000000409 INF: FPGA: Recv ZSGSRD 35712
17-03-17 23:04:01.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:01.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:01.028 -07 000000541 INF: FPGA: Recv ZSGSRD 35720
17-03-17 23:04:01.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:01.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:01.038 -07 000000478 INF: FPGA: Recv ZSGSRD 35708
17-03-17 23:04:01.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:01.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:01.048 -07 000000415 INF: FPGA: Recv ZSGSRD 35709
17-03-17 23:04:01.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:01.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:01.058 -07 000000501 INF: FPGA: Recv ZSGSRD 35713
17-03-17 23:04:01.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:01.068 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:04:01.068 -07 000000462 INF: FPGA: Recv ZPIEZORD 31647
17-03-17 23:04:01.078 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:01.078 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.658 V. Piezo Error = -9.0 V.
17-03-17 23:04:01.078 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.7 um, Read 10 ADC samples: Avg = 35711 (-168.9 uncal um), Error = 0.9 uncal um, Median = 35712 (-168.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 35702 (-168.8 uncal um), Max = 35720 (-168.9 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 23:04:01.078 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35711, posNoise = 9, negNoise = 9
17-03-17 23:04:01.078 -07 000000610 INF: Z Motor: After move to -0.169732, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:04:01.078 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 23:04:01.078 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:04:01.078 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:04:01.078 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:04:01.078 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:04:01.078 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:04:01.078 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:04:01.078 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:04:01.078 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:04:01.078 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 23:04:01.078 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:04:01.078 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 3 ms.
17-03-17 23:04:01.078 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:04:01.088 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:04:01.088 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:04:01.088 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 23:04:01.088 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:04:01.098 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 23:04:01.098 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 23:04:01.098 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 23:04:01.098 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 23:04:01.098 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 466 466 224 224 37255 150\n [Camera]
17-03-17 23:04:01.298 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:04:01.768 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 658
17-03-17 23:04:01.768 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 658
17-03-17 23:04:01.768 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:04:01.768 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 658
17-03-17 23:04:01.768 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 658
17-03-17 23:04:01.778 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:04:01.878 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:04:01.878 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2602438304, 0x0, 391868352) start.
17-03-17 23:04:01.888 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:04:01.888 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 23:04:01.958 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37255 851
17-03-17 23:04:02.028 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:04:02.028 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 70. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1132, R2=1178, Total=2310. Warn if over 250 bubbles per interval.
17-03-17 23:04:02.108 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1001
17-03-17 23:04:02.278 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2602438304, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 23:04:02.278 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 23:04:02.278 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:04:02.278 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 23:04:02.278 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 23:04:02.278 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:04:02.278 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:04:02.278 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 507 ms.
17-03-17 23:04:02.278 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:04:02.288 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 514 ms.
17-03-17 23:04:02.338 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1225
17-03-17 23:04:02.338 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1225
17-03-17 23:04:02.338 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:04:02.338 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1225
17-03-17 23:04:02.338 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1225
17-03-17 23:04:02.338 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:04:02.348 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:04:02.348 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 23:04:02.348 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:04:02.348 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 23:04:02.528 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP 1418
17-03-17 23:04:02.528 -07 000000409 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:04:02.528 -07 000000610 INF: FPGA: 'CAMDBLSNAP 466 466 224 224 37255 150' command took 2 ms to send, 1415 ms to get response, and 1425 ms overall
17-03-17 23:04:02.528 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:04:02.528 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87841796875, Z-Position -0.169738391805561. ------
17-03-17 23:04:02.538 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:04:02.538 -07 000000486 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17637 mm
17-03-17 23:04:02.538 -07 000000486 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:04:02.538 -07 000000409 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:04:02.538 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 23:04:02.538 -07 000000541 INF: Y Motor: Moving to 65.7226 mm, started at 64.8784 mm, delta = 0.8442 mm
17-03-17 23:04:02.538 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 38528, sync = True, waitForSettling = False)
17-03-17 23:04:02.538 -07 000000618 INF: Z Motor: Moving to -0.176370 mm, started at -0.169738 mm, distance = -6.63 um
17-03-17 23:04:02.548 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:02.548 -07 000000618 INF: FPGA: Xmit ZDACW 38528\n [Z Motor]
17-03-17 23:04:02.548 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 23:04:02.558 -07 000000618 INF: FPGA: 'ZDACW 38528' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 23:04:02.558 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:04:02.558 -07 000000561 INF: FPGA: Recv YRDPOS 132871
17-03-17 23:04:02.568 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 23:04:02.568 -07 000000541 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:04:02.568 -07 000000541 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:04:02.568 -07 000000541 INF: Y Motor: Moving 1351 steps-30
17-03-17 23:04:02.568 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:04:02.578 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:04:02.578 -07 000000561 INF: FPGA: Recv ZDACR 38528
17-03-17 23:04:02.588 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:04:02.588 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:04:02.588 -07 000000618 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-17 23:04:02.738 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 23:04:02.738 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 23:04:02.738 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:04:02.748 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 23:04:02.748 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 23:04:02.748 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:04:02.748 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:04:02.748 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 23:04:02.748 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:04:02.758 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 23:04:02.768 -07 000000623 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:04:02.768 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 223 ms overall
17-03-17 23:04:02.958 -07 000000482 INF: FPGA: Recv YMVTILE
17-03-17 23:04:02.958 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 23:04:02.998 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:04:03.008 -07 000000462 INF: FPGA: Recv YRDPOS 134581
17-03-17 23:04:03.008 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 23:04:03.008 -07 000000541 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:04:03.008 -07 000000541 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 23:04:03.008 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.126 mm/sec
17-03-17 23:04:03.848 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 71, FrontChillerTemperature: 3.970374,
17-03-17 23:04:03.958 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:04:03.958 -07 000000382 INF: FPGA: Recv YRDPOS 134581
17-03-17 23:04:03.968 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:04:03.968 -07 000000541 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:04:03.998 -07 000000541 INF: Y Motor: After move to 65.722610, error = -0.009232, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:04:03.998 -07 000000541 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:04:03.998 -07 000000541 INF: Y Motor: Moved to 65.7134 after 1455 ms (table move)
17-03-17 23:04:03.998 -07 000000486 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176370 mm (DAC = 38528)
17-03-17 23:04:03.998 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:03.998 -07 000000627 INF: FPGA: Recv ZSGSRD 36751
17-03-17 23:04:04.008 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:04:04.008 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:04.008 -07 000000478 INF: FPGA: Recv ZSGSRD 36738
17-03-17 23:04:04.018 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:04.018 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:04.018 -07 000000576 INF: FPGA: Recv ZSGSRD 36737
17-03-17 23:04:04.028 -07 000000486 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:04.028 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:04.028 -07 000000448 INF: FPGA: Recv ZSGSRD 36744
17-03-17 23:04:04.038 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:04.038 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:04.038 -07 000000623 INF: FPGA: Recv ZSGSRD 36747
17-03-17 23:04:04.048 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:04.048 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:04.048 -07 000000551 INF: FPGA: Recv ZSGSRD 36742
17-03-17 23:04:04.058 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:04.058 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:04.058 -07 000000501 INF: FPGA: Recv ZSGSRD 36742
17-03-17 23:04:04.068 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:04.068 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:04.068 -07 000000415 INF: FPGA: Recv ZSGSRD 36740
17-03-17 23:04:04.078 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:04.078 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:04.078 -07 000000429 INF: FPGA: Recv ZSGSRD 36743
17-03-17 23:04:04.088 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:04.088 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:04.088 -07 000000478 INF: FPGA: Recv ZSGSRD 36745
17-03-17 23:04:04.098 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:04.098 -07 000000486 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:04:04.098 -07 000000462 INF: FPGA: Recv ZPIEZORD 33040
17-03-17 23:04:04.108 -07 000000486 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:04.108 -07 000000486 INF: Z Motor: Piezo is near 50.6 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.879 V. Piezo Error = -8.2 V.
17-03-17 23:04:04.108 -07 000000486 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.4 um, Read 10 ADC samples: Avg = 36743 (-175.5 uncal um), Error = 0.9 uncal um, Median = 36742 (-175.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36737 (-175.4 uncal um), Max = 36751 (-175.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:04:04.108 -07 000000486 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36743, posNoise = 8, negNoise = 6
17-03-17 23:04:04.108 -07 000000486 INF: Z Motor: After move to -0.176370, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:04:04.108 -07 000000486 INF: Z Motor: Settle wait time = 1458 ms, measure time = 106 ms (allowed 150 ms), total time = 1564 ms
17-03-17 23:04:04.108 -07 000000486 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 23:04:04.158 -07 000000486 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1619 ms
17-03-17 23:04:04.158 -07 000000486 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:04:04.158 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:04:04.158 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:04:04.158 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:04:04.158 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:04:04.158 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:04:04.158 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:04:04.158 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 23:04:04.158 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:04:04.168 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:04:04.168 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:04:04.178 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 23:04:04.178 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 23:04:04.188 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:04:04.228 -07 000000409 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:04:04.428 -07 000000551 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:04:04.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:04:04.428 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:04:04.428 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2503642840, 0x0, 559484976) start.
17-03-17 23:04:04.468 -07 000000478 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:04:04.468 -07 000000482 INF: FPGA: Recv CAMSNAP
17-03-17 23:04:04.468 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 291 ms overall
17-03-17 23:04:04.548 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2503642840, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 23:04:04.548 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:04:04.548 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:04:04.548 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 23:04:04.568 -07 000000475 INF: Autofocus start
17-03-17 23:04:04.568 -07 000000475 INF: MeasureProfile start
17-03-17 23:04:04.568 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:04:04.568 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:04:04.578 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:04:04.578 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:04:04.578 -07 000000475 INF: MeasureProfile done
17-03-17 23:04:04.578 -07 000000475 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 23:04:04.578 -07 000000475 INF: Autofocus finished
17-03-17 23:04:04.778 -07 000000627 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:04:04.778 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:04:04.778 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71337890625, Z-position -0.176368178735858. ----------
17-03-17 23:04:04.788 -07 000000610 INF: Cycle	71	Tile	8	Exposure Settings		A	466	G	224	T	224	C	466
17-03-17 23:04:04.788 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37008, sync = True, waitForSettling = True)
17-03-17 23:04:04.788 -07 000000610 INF: Z Motor: Moving to -0.169412 mm, started at -0.176368 mm, distance = 6.96 um
17-03-17 23:04:04.788 -07 000000610 INF: FPGA: Xmit ZDACW 37008\n [Z Motor]
17-03-17 23:04:04.788 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 23:04:04.798 -07 000000610 INF: FPGA: 'ZDACW 37008' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:04:04.798 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:04:04.798 -07 000000547 INF: FPGA: Recv ZDACR 37008
17-03-17 23:04:04.808 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:04.808 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:04:04.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:04.958 -07 000000475 INF: FPGA: Recv ZSGSRD 35663
17-03-17 23:04:04.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:04.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:04.968 -07 000000593 INF: FPGA: Recv ZSGSRD 35663
17-03-17 23:04:04.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:04.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:04.978 -07 000000501 INF: FPGA: Recv ZSGSRD 35659
17-03-17 23:04:04.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:04.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:04.988 -07 000000462 INF: FPGA: Recv ZSGSRD 35660
17-03-17 23:04:04.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:04.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:04.998 -07 000000501 INF: FPGA: Recv ZSGSRD 35654
17-03-17 23:04:05.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:05.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:05.008 -07 000000415 INF: FPGA: Recv ZSGSRD 35661
17-03-17 23:04:05.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:05.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:05.018 -07 000000382 INF: FPGA: Recv ZSGSRD 35665
17-03-17 23:04:05.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:05.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:05.028 -07 000000462 INF: FPGA: Recv ZSGSRD 35663
17-03-17 23:04:05.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:05.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:05.038 -07 000000478 INF: FPGA: Recv ZSGSRD 35665
17-03-17 23:04:05.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:05.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:05.048 -07 000000541 INF: FPGA: Recv ZSGSRD 35666
17-03-17 23:04:05.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:05.058 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:04:05.058 -07 000000501 INF: FPGA: Recv ZPIEZORD 31607
17-03-17 23:04:05.068 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:05.068 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.647 V. Piezo Error = -8.9 V.
17-03-17 23:04:05.068 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.4 um, Read 10 ADC samples: Avg = 35662 (-168.6 uncal um), Error = 0.9 uncal um, Median = 35663 (-168.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35654 (-168.5 uncal um), Max = 35666 (-168.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 23:04:05.068 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35662, posNoise = 4, negNoise = 8
17-03-17 23:04:05.068 -07 000000610 INF: Z Motor: After move to -0.169412, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:04:05.068 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 23:04:05.068 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:04:05.068 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:04:05.068 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:04:05.068 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:04:05.068 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:04:05.068 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:04:05.068 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:04:05.068 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:04:05.068 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:04:05.068 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:04:05.068 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:04:05.068 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:04:05.078 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 23:04:05.078 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:04:05.078 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:04:05.078 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:04:05.088 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 23:04:05.088 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 23:04:05.088 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-17 23:04:05.088 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 23:04:05.088 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 466 466 224 224 37185 150\n [Camera]
17-03-17 23:04:05.288 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:04:05.758 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 658
17-03-17 23:04:05.758 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 658
17-03-17 23:04:05.758 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:04:05.758 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 658
17-03-17 23:04:05.758 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 658
17-03-17 23:04:05.758 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:04:05.758 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:04:05.758 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 23:04:05.758 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:04:05.758 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 23:04:05.948 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37185 851
17-03-17 23:04:06.098 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1001
17-03-17 23:04:06.158 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 23:04:06.158 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 23:04:06.158 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:04:06.158 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 23:04:06.158 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 23:04:06.158 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:04:06.158 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 23:04:06.158 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 23:04:06.168 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:04:06.168 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 23:04:06.328 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1225
17-03-17 23:04:06.328 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1225
17-03-17 23:04:06.328 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:04:06.428 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1225
17-03-17 23:04:06.428 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1225
17-03-17 23:04:06.428 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:04:06.428 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:04:06.428 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 23:04:06.438 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:04:06.438 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-17 23:04:06.518 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1418
17-03-17 23:04:06.518 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:04:06.518 -07 000000610 INF: FPGA: 'CAMDBLSNAP 466 466 224 224 37185 150' command took 2 ms to send, 1422 ms to get response, and 1425 ms overall
17-03-17 23:04:06.518 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:04:06.518 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71337890625, Z-Position -0.169423605410614. ------
17-03-17 23:04:06.518 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:04:06.518 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17576 mm
17-03-17 23:04:06.518 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:04:06.518 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 23:04:06.528 -07 000000618 INF: Y Motor: Moving to 66.5526 mm, started at 65.7134 mm, delta = 0.8392 mm
17-03-17 23:04:06.528 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:04:06.528 -07 000000482 INF: Z Motor: Entering MoveAbsStepped (DAC = 38394, sync = True, waitForSettling = False)
17-03-17 23:04:06.528 -07 000000482 INF: Z Motor: Moving to -0.175756 mm, started at -0.169424 mm, distance = -6.33 um
17-03-17 23:04:06.528 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:04:06.528 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:04:06.528 -07 000000593 INF: FPGA: Recv YRDPOS 134581
17-03-17 23:04:06.538 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:06.538 -07 000000618 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:04:06.538 -07 000000618 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:04:06.538 -07 000000618 INF: Y Motor: Moving 1343 steps-19
17-03-17 23:04:06.538 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:04:06.548 -07 000000482 INF: FPGA: Xmit ZDACW 38394\n [Z Motor]
17-03-17 23:04:06.548 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 23:04:06.558 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:04:06.558 -07 000000482 INF: FPGA: 'ZDACW 38394' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:04:06.568 -07 000000482 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:04:06.568 -07 000000382 INF: FPGA: Recv ZDACR 38394
17-03-17 23:04:06.578 -07 000000482 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:04:06.578 -07 000000482 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 23:04:06.738 -07 000000486 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:04:06.738 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 3 ms to send, 196 ms to get response, and 215 ms overall
17-03-17 23:04:06.828 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 23:04:06.828 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 23:04:06.828 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:04:06.838 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 23:04:06.838 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 23:04:06.838 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:04:06.838 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:04:06.838 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:04:06.838 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 513 ms.
17-03-17 23:04:06.848 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 23:04:06.928 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 23:04:06.928 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 23:04:06.968 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:04:06.978 -07 000000478 INF: FPGA: Recv YRDPOS 136271
17-03-17 23:04:06.978 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 23:04:06.978 -07 000000618 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:04:06.978 -07 000000618 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 23:04:06.978 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.114 mm/sec
17-03-17 23:04:07.028 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:04:07.028 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 70. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1132, R2=1178, Total=2310. Warn if over 250 bubbles per interval.
17-03-17 23:04:07.928 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:04:07.928 -07 000000415 INF: FPGA: Recv YRDPOS 136271
17-03-17 23:04:07.938 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:04:07.938 -07 000000618 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:04:07.958 -07 000000618 INF: Y Motor: After move to 66.552605, error = -0.014030, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:04:07.958 -07 000000618 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:04:07.958 -07 000000618 INF: Y Motor: Moved to 66.5386 after 1436 ms (table move)
17-03-17 23:04:07.968 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175756 mm (DAC = 38394)
17-03-17 23:04:07.968 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:07.968 -07 000000627 INF: FPGA: Recv ZSGSRD 36643
17-03-17 23:04:07.978 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:07.978 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:07.978 -07 000000501 INF: FPGA: Recv ZSGSRD 36656
17-03-17 23:04:07.988 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:07.988 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:07.988 -07 000000551 INF: FPGA: Recv ZSGSRD 36655
17-03-17 23:04:07.998 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:07.998 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:07.998 -07 000000627 INF: FPGA: Recv ZSGSRD 36656
17-03-17 23:04:08.008 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:08.008 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:08.008 -07 000000502 INF: FPGA: Recv ZSGSRD 36652
17-03-17 23:04:08.018 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:08.018 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:08.018 -07 000000486 INF: FPGA: Recv ZSGSRD 36644
17-03-17 23:04:08.028 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:08.028 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:08.028 -07 000000482 INF: FPGA: Recv ZSGSRD 36640
17-03-17 23:04:08.038 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:08.038 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:08.038 -07 000000547 INF: FPGA: Recv ZSGSRD 36646
17-03-17 23:04:08.048 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:08.048 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:08.048 -07 000000448 INF: FPGA: Recv ZSGSRD 36645
17-03-17 23:04:08.058 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:08.058 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:08.058 -07 000000551 INF: FPGA: Recv ZSGSRD 36653
17-03-17 23:04:08.068 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:08.068 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:04:08.068 -07 000000462 INF: FPGA: Recv ZPIEZORD 32931
17-03-17 23:04:08.078 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:08.078 -07 000000576 INF: Z Motor: Piezo is near 50.3 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.859 V. Piezo Error = -8.2 V.
17-03-17 23:04:08.078 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.8 um, Read 10 ADC samples: Avg = 36649 (-174.9 uncal um), Error = 0.9 uncal um, Median = 36649 (-174.9 uncal um), StdDev = 6 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36640 (-174.8 uncal um), Max = 36656 (-174.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 23:04:08.078 -07 000000576 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36649, posNoise = 7, negNoise = 9
17-03-17 23:04:08.078 -07 000000576 INF: Z Motor: After move to -0.175756, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:04:08.078 -07 000000576 INF: Z Motor: Settle wait time = 1439 ms, measure time = 111 ms (allowed 150 ms), total time = 1550 ms
17-03-17 23:04:08.078 -07 000000576 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 23:04:08.118 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1592 ms
17-03-17 23:04:08.118 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:04:08.118 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:04:08.118 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:04:08.118 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:04:08.118 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:04:08.118 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:04:08.118 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:04:08.118 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:04:08.118 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:04:08.128 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:04:08.128 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:04:08.128 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 23:04:08.128 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 23:04:08.138 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:04:08.178 -07 000000593 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:04:08.378 -07 000000547 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:04:08.378 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:04:08.378 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:04:08.378 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2415923248, 0x0, 559484976) start.
17-03-17 23:04:08.418 -07 000000623 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:04:08.418 -07 000000482 INF: FPGA: Recv CAMSNAP
17-03-17 23:04:08.418 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 23:04:08.498 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2415923248, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 23:04:08.498 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:04:08.498 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:04:08.498 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 23:04:08.518 -07 000000462 INF: Autofocus start
17-03-17 23:04:08.518 -07 000000462 INF: MeasureProfile start
17-03-17 23:04:08.518 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:04:08.518 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:04:08.528 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:04:08.528 -07 000000486 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:04:08.528 -07 000000462 INF: MeasureProfile done
17-03-17 23:04:08.528 -07 000000462 INF: X=32  Z correction [um]=0.09220707
17-03-17 23:04:08.528 -07 000000462 INF: Autofocus finished
17-03-17 23:04:08.728 -07 000000448 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:04:08.728 -07 000000486 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:04:08.728 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53857421875, Z-position -0.175764302794532. ----------
17-03-17 23:04:08.728 -07 000000610 INF: Cycle	71	Tile	9	Exposure Settings		A	466	G	224	T	224	C	466
17-03-17 23:04:08.738 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36927, sync = True, waitForSettling = True)
17-03-17 23:04:08.738 -07 000000610 INF: Z Motor: Moving to -0.169041 mm, started at -0.175764 mm, distance = 6.72 um
17-03-17 23:04:08.738 -07 000000610 INF: FPGA: Xmit ZDACW 36927\n [Z Motor]
17-03-17 23:04:08.738 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 23:04:08.748 -07 000000610 INF: FPGA: 'ZDACW 36927' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:04:08.748 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:04:08.748 -07 000000478 INF: FPGA: Recv ZDACR 36927
17-03-17 23:04:08.758 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:08.758 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:04:08.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:08.908 -07 000000382 INF: FPGA: Recv ZSGSRD 35607
17-03-17 23:04:08.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:04:08.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:08.918 -07 000000482 INF: FPGA: Recv ZSGSRD 35603
17-03-17 23:04:08.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:08.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:08.928 -07 000000478 INF: FPGA: Recv ZSGSRD 35603
17-03-17 23:04:08.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:08.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:08.938 -07 000000501 INF: FPGA: Recv ZSGSRD 35604
17-03-17 23:04:08.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:08.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:08.948 -07 000000415 INF: FPGA: Recv ZSGSRD 35607
17-03-17 23:04:08.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:08.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:08.958 -07 000000486 INF: FPGA: Recv ZSGSRD 35604
17-03-17 23:04:08.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:08.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:08.968 -07 000000462 INF: FPGA: Recv ZSGSRD 35603
17-03-17 23:04:08.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:08.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:08.978 -07 000000478 INF: FPGA: Recv ZSGSRD 35604
17-03-17 23:04:08.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:08.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:08.988 -07 000000561 INF: FPGA: Recv ZSGSRD 35602
17-03-17 23:04:08.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:08.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:08.998 -07 000000618 INF: FPGA: Recv ZSGSRD 35607
17-03-17 23:04:09.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:09.008 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:04:09.008 -07 000000486 INF: FPGA: Recv ZPIEZORD 31496
17-03-17 23:04:09.018 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:09.018 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.635 V. Piezo Error = -9.1 V.
17-03-17 23:04:09.018 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.0 um, Read 10 ADC samples: Avg = 35604 (-168.2 uncal um), Error = 0.9 uncal um, Median = 35604 (-168.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 35602 (-168.2 uncal um), Max = 35607 (-168.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 23:04:09.018 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35604, posNoise = 3, negNoise = 2
17-03-17 23:04:09.018 -07 000000610 INF: Z Motor: After move to -0.169041, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:04:09.018 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 23:04:09.018 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:04:09.018 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:04:09.018 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:04:09.018 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:04:09.028 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:04:09.028 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:04:09.028 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:04:09.028 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:04:09.028 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:04:09.028 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:04:09.028 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:04:09.028 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:04:09.028 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:04:09.028 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:04:09.038 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 23:04:09.038 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:04:09.048 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 20 ms.
17-03-17 23:04:09.048 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 33 ms.
17-03-17 23:04:09.058 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 19 ms.
17-03-17 23:04:09.058 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 33 ms.
17-03-17 23:04:09.058 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 466 466 224 224 37104 150\n [Camera]
17-03-17 23:04:09.218 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 71, FrontChillerTemperature: 3.98264,
17-03-17 23:04:09.258 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:04:09.718 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 658
17-03-17 23:04:09.718 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 658
17-03-17 23:04:09.718 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:04:09.728 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 658
17-03-17 23:04:09.728 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 658
17-03-17 23:04:09.728 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:04:09.728 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2435004632, 0x0, 391868352) start.
17-03-17 23:04:09.728 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:04:09.728 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:04:09.728 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2470426896, 0x0, 418435064) start.
17-03-17 23:04:09.918 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37104 851
17-03-17 23:04:10.068 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1001
17-03-17 23:04:10.118 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2435004632, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 23:04:10.118 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 23:04:10.118 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:04:10.118 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:04:10.118 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 23:04:10.118 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2470426896, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 23:04:10.118 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 23:04:10.118 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:04:10.128 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:04:10.138 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 23:04:10.288 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1225
17-03-17 23:04:10.288 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1225
17-03-17 23:04:10.288 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:04:10.288 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1225
17-03-17 23:04:10.288 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1225
17-03-17 23:04:10.288 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:04:10.398 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:04:10.398 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 23:04:10.408 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:04:10.408 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 23:04:10.478 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP 1418
17-03-17 23:04:10.478 -07 000000415 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:04:10.478 -07 000000610 INF: FPGA: 'CAMDBLSNAP 466 466 224 224 37104 150' command took 2 ms to send, 1417 ms to get response, and 1425 ms overall
17-03-17 23:04:10.478 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:04:10.478 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53857421875, Z-Position -0.169051001106392. ------
17-03-17 23:04:10.488 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:04:10.488 -07 000000627 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17581 mm
17-03-17 23:04:10.488 -07 000000627 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:04:10.488 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 38405, sync = True, waitForSettling = False)
17-03-17 23:04:10.488 -07 000000486 INF: Z Motor: Moving to -0.175807 mm, started at -0.169051 mm, distance = -6.76 um
17-03-17 23:04:10.488 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:04:10.488 -07 000000551 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 23:04:10.488 -07 000000551 INF: Y Motor: Moving to 67.3826 mm, started at 66.5386 mm, delta = 0.8440 mm
17-03-17 23:04:10.498 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:04:10.498 -07 000000486 INF: FPGA: Xmit ZDACW 38405\n [Z Motor]
17-03-17 23:04:10.498 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 23:04:10.508 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:04:10.508 -07 000000486 INF: FPGA: 'ZDACW 38405' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 23:04:10.508 -07 000000448 INF: FPGA: Recv YRDPOS 136271
17-03-17 23:04:10.518 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 23:04:10.518 -07 000000551 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:04:10.518 -07 000000551 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:04:10.518 -07 000000551 INF: Y Motor: Moving 1350 steps-29
17-03-17 23:04:10.518 -07 000000475 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:04:10.528 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:04:10.528 -07 000000547 INF: FPGA: Recv ZDACR 38405
17-03-17 23:04:10.538 -07 000000486 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:04:10.538 -07 000000486 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-17 23:04:10.538 -07 000000551 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:04:10.718 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:04:10.718 -07 000000475 INF: FPGA: 'FOCMRRFOC' command took 3 ms to send, 196 ms to get response, and 225 ms overall
17-03-17 23:04:10.798 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 23:04:10.798 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 23:04:10.798 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:04:10.798 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 23:04:10.808 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 23:04:10.808 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:04:10.808 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:04:10.808 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 517 ms.
17-03-17 23:04:10.808 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:04:10.818 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 521 ms.
17-03-17 23:04:10.908 -07 000000448 INF: FPGA: Recv YMVTILE
17-03-17 23:04:10.908 -07 000000551 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 23:04:10.948 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:04:10.958 -07 000000382 INF: FPGA: Recv YRDPOS 137977
17-03-17 23:04:10.958 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 23:04:10.958 -07 000000551 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:04:10.958 -07 000000551 INF: Y Motor: Position error before settling (table move) = -23 encoder counts (-0.011 mm)
17-03-17 23:04:10.958 -07 000000551 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.844 mm, average velocity = 2.121 mm/sec
17-03-17 23:04:11.908 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:04:11.908 -07 000000482 INF: FPGA: Recv YRDPOS 137977
17-03-17 23:04:11.918 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:04:11.918 -07 000000551 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:04:11.938 -07 000000551 INF: Y Motor: After move to 67.382607, error = -0.011024, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:04:11.938 -07 000000551 INF: Y Motor: Position error after settling (table move) = -23 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:04:11.938 -07 000000551 INF: Y Motor: Moved to 67.3716 after 1448 ms (table move)
17-03-17 23:04:11.938 -07 000000627 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175807 mm (DAC = 38405)
17-03-17 23:04:11.938 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:11.948 -07 000000486 INF: FPGA: Recv ZSGSRD 36663
17-03-17 23:04:11.948 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 23:04:11.948 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:11.948 -07 000000429 INF: FPGA: Recv ZSGSRD 36654
17-03-17 23:04:11.958 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:04:11.958 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:11.958 -07 000000551 INF: FPGA: Recv ZSGSRD 36660
17-03-17 23:04:11.968 -07 000000627 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:11.968 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:11.968 -07 000000486 INF: FPGA: Recv ZSGSRD 36663
17-03-17 23:04:11.978 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:11.978 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:11.978 -07 000000475 INF: FPGA: Recv ZSGSRD 36658
17-03-17 23:04:11.988 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:11.988 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:11.988 -07 000000415 INF: FPGA: Recv ZSGSRD 36654
17-03-17 23:04:11.998 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:11.998 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:11.998 -07 000000409 INF: FPGA: Recv ZSGSRD 36656
17-03-17 23:04:12.008 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:12.008 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:12.008 -07 000000623 INF: FPGA: Recv ZSGSRD 36653
17-03-17 23:04:12.018 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:12.018 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:12.018 -07 000000382 INF: FPGA: Recv ZSGSRD 36657
17-03-17 23:04:12.028 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:12.028 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:12.028 -07 000000478 INF: FPGA: Recv ZSGSRD 36656
17-03-17 23:04:12.028 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:04:12.028 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 70. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1132, R2=1178, Total=2310. Warn if over 250 bubbles per interval.
17-03-17 23:04:12.038 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:12.038 -07 000000627 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:04:12.038 -07 000000618 INF: FPGA: Recv ZPIEZORD 32955
17-03-17 23:04:12.048 -07 000000627 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:12.048 -07 000000627 INF: Z Motor: Piezo is near 50.4 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.860 V. Piezo Error = -8.2 V.
17-03-17 23:04:12.048 -07 000000627 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.8 um, Read 10 ADC samples: Avg = 36657 (-174.9 uncal um), Error = 0.9 uncal um, Median = 36656 (-174.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36653 (-174.9 uncal um), Max = 36663 (-175.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:04:12.048 -07 000000627 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36657, posNoise = 6, negNoise = 4
17-03-17 23:04:12.048 -07 000000627 INF: Z Motor: After move to -0.175807, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:04:12.048 -07 000000627 INF: Z Motor: Settle wait time = 1453 ms, measure time = 102 ms (allowed 150 ms), total time = 1555 ms
17-03-17 23:04:12.048 -07 000000627 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 23:04:12.098 -07 000000627 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1606 ms
17-03-17 23:04:12.098 -07 000000627 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:04:12.098 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:04:12.098 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:04:12.098 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:04:12.098 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:04:12.098 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:04:12.098 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:04:12.098 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 23:04:12.098 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:04:12.108 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:04:12.108 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:04:12.108 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 23:04:12.108 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 23:04:12.118 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:04:12.158 -07 000000448 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:04:12.358 -07 000000475 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:04:12.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:04:12.358 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:04:12.358 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2415923248, 0x0, 559484976) start.
17-03-17 23:04:12.398 -07 000000551 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:04:12.398 -07 000000541 INF: FPGA: Recv CAMSNAP
17-03-17 23:04:12.398 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 284 ms overall
17-03-17 23:04:12.478 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2415923248, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 23:04:12.478 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:04:12.478 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:04:12.478 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 23:04:12.498 -07 000000478 INF: Autofocus start
17-03-17 23:04:12.498 -07 000000478 INF: MeasureProfile start
17-03-17 23:04:12.498 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:04:12.508 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:04:12.508 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:04:12.508 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:04:12.508 -07 000000478 INF: MeasureProfile done
17-03-17 23:04:12.508 -07 000000478 INF: X=16  Z correction [um]=0.01042744
17-03-17 23:04:12.508 -07 000000478 INF: Autofocus finished
17-03-17 23:04:12.708 -07 000000547 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:04:12.708 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:04:12.708 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37158203125, Z-position -0.175815696491666. ----------
17-03-17 23:04:12.718 -07 000000610 INF: Cycle	71	Tile	10	Exposure Settings		A	466	G	224	T	224	C	466
17-03-17 23:04:12.718 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36920, sync = True, waitForSettling = True)
17-03-17 23:04:12.718 -07 000000610 INF: Z Motor: Moving to -0.169009 mm, started at -0.175816 mm, distance = 6.81 um
17-03-17 23:04:12.718 -07 000000610 INF: FPGA: Xmit ZDACW 36920\n [Z Motor]
17-03-17 23:04:12.718 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 23:04:12.728 -07 000000610 INF: FPGA: 'ZDACW 36920' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:04:12.728 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:04:12.728 -07 000000486 INF: FPGA: Recv ZDACR 36920
17-03-17 23:04:12.738 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:12.738 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:04:12.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:12.888 -07 000000576 INF: FPGA: Recv ZSGSRD 35599
17-03-17 23:04:12.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:04:12.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:12.898 -07 000000623 INF: FPGA: Recv ZSGSRD 35603
17-03-17 23:04:12.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:12.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:12.908 -07 000000429 INF: FPGA: Recv ZSGSRD 35600
17-03-17 23:04:12.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:12.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:12.918 -07 000000627 INF: FPGA: Recv ZSGSRD 35594
17-03-17 23:04:12.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:12.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:12.928 -07 000000482 INF: FPGA: Recv ZSGSRD 35603
17-03-17 23:04:12.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:12.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:12.938 -07 000000576 INF: FPGA: Recv ZSGSRD 35601
17-03-17 23:04:12.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:12.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:12.948 -07 000000623 INF: FPGA: Recv ZSGSRD 35594
17-03-17 23:04:12.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:12.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:12.958 -07 000000429 INF: FPGA: Recv ZSGSRD 35598
17-03-17 23:04:12.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:12.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:12.968 -07 000000627 INF: FPGA: Recv ZSGSRD 35596
17-03-17 23:04:12.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:12.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:12.978 -07 000000462 INF: FPGA: Recv ZSGSRD 35600
17-03-17 23:04:12.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:12.988 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:04:12.988 -07 000000593 INF: FPGA: Recv ZPIEZORD 31518
17-03-17 23:04:12.998 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:12.998 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.634 V. Piezo Error = -9.0 V.
17-03-17 23:04:12.998 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.0 um, Read 10 ADC samples: Avg = 35599 (-168.1 uncal um), Error = 0.9 uncal um, Median = 35600 (-168.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35594 (-168.1 uncal um), Max = 35603 (-168.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:04:12.998 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35599, posNoise = 4, negNoise = 5
17-03-17 23:04:12.998 -07 000000610 INF: Z Motor: After move to -0.169009, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:04:12.998 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 23:04:12.998 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:04:12.998 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:04:12.998 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:04:12.998 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:04:12.998 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:04:12.998 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:04:12.998 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:04:12.998 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:04:12.998 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:04:12.998 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:04:12.998 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 23:04:12.998 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:04:13.008 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 23:04:13.008 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:04:13.008 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:04:13.008 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:04:13.018 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 23:04:13.018 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 23:04:13.018 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 23:04:13.018 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 23:04:13.028 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 466 466 224 224 37096 150\n [Camera]
17-03-17 23:04:13.218 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:04:13.688 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 658
17-03-17 23:04:13.688 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 658
17-03-17 23:04:13.688 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:04:13.688 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 658
17-03-17 23:04:13.688 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 658
17-03-17 23:04:13.698 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:04:13.698 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:04:13.698 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 2439409936, 0x0, 391868352) start.
17-03-17 23:04:13.698 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:04:13.698 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2474832200, 0x0, 418435064) start.
17-03-17 23:04:13.878 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37096 851
17-03-17 23:04:14.028 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1001
17-03-17 23:04:14.088 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 2439409936, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 23:04:14.088 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 23:04:14.088 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:04:14.088 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2474832200, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 23:04:14.088 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 23:04:14.088 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:04:14.088 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:04:14.088 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 23:04:14.098 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 23:04:14.098 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 23:04:14.258 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1225
17-03-17 23:04:14.258 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1225
17-03-17 23:04:14.258 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:04:14.258 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1225
17-03-17 23:04:14.258 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1225
17-03-17 23:04:14.258 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:04:14.258 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:04:14.258 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 23:04:14.268 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:04:14.268 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2602438304, 0x0, 391868352) start.
17-03-17 23:04:14.448 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1418
17-03-17 23:04:14.448 -07 000000547 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:04:14.448 -07 000000610 INF: FPGA: 'CAMDBLSNAP 466 466 224 224 37096 150' command took 2 ms to send, 1415 ms to get response, and 1425 ms overall
17-03-17 23:04:14.448 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:04:14.448 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37158203125, Z-Position -0.169018880045683. ------
17-03-17 23:04:14.458 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:04:14.458 -07 000000486 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17541 mm
17-03-17 23:04:14.458 -07 000000486 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:04:14.568 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:04:14.568 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 110 ms overall
17-03-17 23:04:14.568 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 23:04:14.568 -07 000000462 INF: Y Motor: Moving to 68.2126 mm, started at 67.3716 mm, delta = 0.8410 mm
17-03-17 23:04:14.568 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:04:14.568 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 38318, sync = True, waitForSettling = False)
17-03-17 23:04:14.568 -07 000000623 INF: Z Motor: Moving to -0.175409 mm, started at -0.169019 mm, distance = -6.39 um
17-03-17 23:04:14.568 -07 000000501 INF: FPGA: Recv YRDPOS 137977
17-03-17 23:04:14.578 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:04:14.578 -07 000000462 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:04:14.578 -07 000000462 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:04:14.578 -07 000000462 INF: Y Motor: Moving 1346 steps-23
17-03-17 23:04:14.588 -07 000000623 INF: FPGA: Xmit ZDACW 38318\n [Z Motor]
17-03-17 23:04:14.588 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 71, FrontChillerTemperature: 3.975845,
17-03-17 23:04:14.588 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 23:04:14.598 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:04:14.598 -07 000000623 INF: FPGA: 'ZDACW 38318' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 23:04:14.618 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:04:14.638 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:04:14.638 -07 000000593 INF: FPGA: Recv ZDACR 38318
17-03-17 23:04:14.638 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 23:04:14.638 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 23:04:14.638 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:04:14.648 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 49 ms overall
17-03-17 23:04:14.648 -07 000000623 INF: Z Motor: MoveAbsStepped took 78 ms (did NOT wait for settling yet))
17-03-17 23:04:14.648 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:04:14.648 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2602438304, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 23:04:14.648 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 23:04:14.648 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:04:14.648 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:04:14.648 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 23:04:14.648 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 23:04:14.798 -07 000000409 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:04:14.798 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 231 ms overall
17-03-17 23:04:14.988 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-17 23:04:14.988 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 417 ms overall
17-03-17 23:04:15.028 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:04:15.038 -07 000000482 INF: FPGA: Recv YRDPOS 139682
17-03-17 23:04:15.038 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 23:04:15.038 -07 000000462 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:04:15.038 -07 000000462 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 23:04:15.038 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 418 ms, distance = 0.841 mm, average velocity = 2.012 mm/sec
17-03-17 23:04:15.988 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:04:15.988 -07 000000551 INF: FPGA: Recv YRDPOS 139682
17-03-17 23:04:15.998 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:04:15.998 -07 000000462 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:04:16.018 -07 000000462 INF: Y Motor: After move to 68.212608, error = -0.008507, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:04:16.018 -07 000000462 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:04:16.018 -07 000000462 INF: Y Motor: Moved to 68.2041 after 1454 ms (table move)
17-03-17 23:04:16.018 -07 000000486 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175409 mm (DAC = 38318)
17-03-17 23:04:16.018 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:16.028 -07 000000541 INF: FPGA: Recv ZSGSRD 36601
17-03-17 23:04:16.028 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 23:04:16.028 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:16.028 -07 000000627 INF: FPGA: Recv ZSGSRD 36595
17-03-17 23:04:16.038 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:04:16.038 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:16.038 -07 000000475 INF: FPGA: Recv ZSGSRD 36602
17-03-17 23:04:16.048 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:16.048 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:16.048 -07 000000501 INF: FPGA: Recv ZSGSRD 36603
17-03-17 23:04:16.058 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:16.058 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:16.058 -07 000000462 INF: FPGA: Recv ZSGSRD 36597
17-03-17 23:04:16.068 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:16.068 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:16.068 -07 000000429 INF: FPGA: Recv ZSGSRD 36593
17-03-17 23:04:16.078 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:16.078 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:16.078 -07 000000576 INF: FPGA: Recv ZSGSRD 36592
17-03-17 23:04:16.088 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:16.088 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:16.088 -07 000000561 INF: FPGA: Recv ZSGSRD 36591
17-03-17 23:04:16.098 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:16.098 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:16.098 -07 000000547 INF: FPGA: Recv ZSGSRD 36592
17-03-17 23:04:16.108 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:16.108 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:16.108 -07 000000502 INF: FPGA: Recv ZSGSRD 36596
17-03-17 23:04:16.118 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:16.118 -07 000000486 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:04:16.118 -07 000000409 INF: FPGA: Recv ZPIEZORD 32865
17-03-17 23:04:16.128 -07 000000486 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:16.128 -07 000000486 INF: Z Motor: Piezo is near 50.2 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.847 V. Piezo Error = -8.3 V.
17-03-17 23:04:16.128 -07 000000486 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.4 um, Read 10 ADC samples: Avg = 36596 (-174.5 uncal um), Error = 0.9 uncal um, Median = 36596 (-174.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36591 (-174.5 uncal um), Max = 36603 (-174.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:04:16.128 -07 000000486 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36596, posNoise = 7, negNoise = 5
17-03-17 23:04:16.128 -07 000000486 INF: Z Motor: After move to -0.175409, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:04:16.128 -07 000000486 INF: Z Motor: Settle wait time = 1457 ms, measure time = 101 ms (allowed 150 ms), total time = 1558 ms
17-03-17 23:04:16.128 -07 000000486 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 23:04:16.178 -07 000000486 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1719 ms
17-03-17 23:04:16.178 -07 000000486 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:04:16.178 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:04:16.178 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:04:16.178 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:04:16.178 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:04:16.178 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:04:16.178 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:04:16.188 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:04:16.188 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:04:16.188 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:04:16.188 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:04:16.198 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 23:04:16.198 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 23:04:16.198 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:04:16.238 -07 000000547 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:04:16.438 -07 000000486 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:04:16.438 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:04:16.438 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:04:16.448 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 23:04:16.478 -07 000000478 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:04:16.478 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 23:04:16.478 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 23:04:16.558 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 23:04:16.558 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:04:16.558 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:04:16.558 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 23:04:16.578 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:04:16.578 -07 000000541 INF: Autofocus start
17-03-17 23:04:16.578 -07 000000541 INF: MeasureProfile start
17-03-17 23:04:16.578 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:04:16.588 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:04:16.588 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:04:16.588 -07 000000541 INF: MeasureProfile done
17-03-17 23:04:16.588 -07 000000541 INF: X=0  Z correction [um]=-0.0713522
17-03-17 23:04:16.588 -07 000000541 INF: Autofocus finished
17-03-17 23:04:16.788 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:04:16.788 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:04:16.788 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.2041015625, Z-position -0.175423819551019. ----------
17-03-17 23:04:16.788 -07 000000610 INF: Cycle	71	Tile	11	Exposure Settings		A	466	G	224	T	224	C	466
17-03-17 23:04:16.798 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36815, sync = True, waitForSettling = True)
17-03-17 23:04:16.798 -07 000000610 INF: Z Motor: Moving to -0.168528 mm, started at -0.175424 mm, distance = 6.90 um
17-03-17 23:04:16.798 -07 000000610 INF: FPGA: Xmit ZDACW 36815\n [Z Motor]
17-03-17 23:04:16.798 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 23:04:16.808 -07 000000610 INF: FPGA: 'ZDACW 36815' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:16.808 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:04:16.808 -07 000000576 INF: FPGA: Recv ZDACR 36815
17-03-17 23:04:16.818 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:16.818 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:04:16.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:16.968 -07 000000475 INF: FPGA: Recv ZSGSRD 35526
17-03-17 23:04:16.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:04:16.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:16.978 -07 000000478 INF: FPGA: Recv ZSGSRD 35525
17-03-17 23:04:16.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:16.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:16.988 -07 000000502 INF: FPGA: Recv ZSGSRD 35524
17-03-17 23:04:16.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:16.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:16.998 -07 000000478 INF: FPGA: Recv ZSGSRD 35532
17-03-17 23:04:17.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:17.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:17.008 -07 000000502 INF: FPGA: Recv ZSGSRD 35521
17-03-17 23:04:17.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:17.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:17.018 -07 000000618 INF: FPGA: Recv ZSGSRD 35526
17-03-17 23:04:17.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:17.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:17.028 -07 000000623 INF: FPGA: Recv ZSGSRD 35527
17-03-17 23:04:17.028 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:04:17.028 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 70. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1132, R2=1178, Total=2310. Warn if over 250 bubbles per interval.
17-03-17 23:04:17.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:17.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:17.038 -07 000000462 INF: FPGA: Recv ZSGSRD 35525
17-03-17 23:04:17.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:17.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:17.048 -07 000000561 INF: FPGA: Recv ZSGSRD 35524
17-03-17 23:04:17.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:17.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:17.058 -07 000000593 INF: FPGA: Recv ZSGSRD 35529
17-03-17 23:04:17.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 4 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:17.068 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:04:17.068 -07 000000501 INF: FPGA: Recv ZPIEZORD 31445
17-03-17 23:04:17.078 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:17.078 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.618 V. Piezo Error = -9.0 V.
17-03-17 23:04:17.078 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.5 um, Read 10 ADC samples: Avg = 35526 (-167.7 uncal um), Error = 0.8 uncal um, Median = 35526 (-167.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35521 (-167.6 uncal um), Max = 35532 (-167.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:04:17.078 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35526, posNoise = 6, negNoise = 5
17-03-17 23:04:17.078 -07 000000610 INF: Z Motor: After move to -0.168528, error = -0.000022, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:04:17.078 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 23:04:17.078 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:04:17.078 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:04:17.078 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:04:17.078 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:04:17.078 -07 000000409 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:04:17.078 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:04:17.078 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:04:17.078 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:04:17.078 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:04:17.078 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:04:17.078 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:04:17.078 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:04:17.088 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 23:04:17.088 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:04:17.088 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 23:04:17.088 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:04:17.098 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-17 23:04:17.098 -07 000000409 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 23:04:17.098 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-17 23:04:17.098 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 23:04:17.108 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 466 466 224 224 36992 150\n [Camera]
17-03-17 23:04:17.308 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:04:17.778 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 658
17-03-17 23:04:17.778 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 658
17-03-17 23:04:17.778 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:04:17.778 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 658
17-03-17 23:04:17.778 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 658
17-03-17 23:04:17.778 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:04:17.778 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:04:17.778 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 23:04:17.778 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:04:17.778 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 23:04:17.968 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36992 851
17-03-17 23:04:18.118 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1001
17-03-17 23:04:18.168 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 23:04:18.168 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 23:04:18.168 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:04:18.168 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 23:04:18.168 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 23:04:18.168 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:04:18.168 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:04:18.168 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 23:04:18.178 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:04:18.178 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 23:04:18.338 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1225
17-03-17 23:04:18.338 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1225
17-03-17 23:04:18.338 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:04:18.348 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1225
17-03-17 23:04:18.348 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1225
17-03-17 23:04:18.348 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:04:18.348 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:04:18.348 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-17 23:04:18.348 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:04:18.348 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-17 23:04:18.528 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1418
17-03-17 23:04:18.528 -07 000000482 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:04:18.528 -07 000000610 INF: FPGA: 'CAMDBLSNAP 466 466 224 224 36992 150' command took 2 ms to send, 1419 ms to get response, and 1426 ms overall
17-03-17 23:04:18.538 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:04:18.538 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.2041015625, Z-Position -0.168549912559335. ------
17-03-17 23:04:18.538 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:04:18.538 -07 000000486 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17502 mm
17-03-17 23:04:18.538 -07 000000486 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:04:18.548 -07 000000415 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 23:04:18.548 -07 000000415 INF: Y Motor: Moving to 69.0426 mm, started at 68.2041 mm, delta = 0.8385 mm
17-03-17 23:04:18.548 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:04:18.548 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:04:18.548 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:04:18.548 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 38233, sync = True, waitForSettling = False)
17-03-17 23:04:18.548 -07 000000382 INF: Z Motor: Moving to -0.175019 mm, started at -0.168550 mm, distance = -6.47 um
17-03-17 23:04:18.548 -07 000000462 INF: FPGA: Recv YRDPOS 139683
17-03-17 23:04:18.558 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:18.558 -07 000000415 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:04:18.558 -07 000000382 INF: FPGA: Xmit ZDACW 38233\n [Z Motor]
17-03-17 23:04:18.558 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 23:04:18.558 -07 000000415 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:04:18.558 -07 000000415 INF: Y Motor: Moving 1341 steps-17
17-03-17 23:04:18.568 -07 000000547 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:04:18.568 -07 000000382 INF: FPGA: 'ZDACW 38233' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 23:04:18.578 -07 000000415 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:04:18.588 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:04:18.588 -07 000000409 INF: FPGA: Recv ZDACR 38233
17-03-17 23:04:18.598 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:04:18.598 -07 000000382 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 23:04:18.748 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 23:04:18.748 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 23:04:18.748 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:04:18.748 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 23:04:18.748 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 23:04:18.748 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:04:18.758 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:04:18.758 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 23:04:18.758 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:04:18.758 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 23:04:18.768 -07 000000623 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:04:18.768 -07 000000547 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 23:04:18.948 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 23:04:18.948 -07 000000415 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 23:04:18.988 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:04:18.998 -07 000000623 INF: FPGA: Recv YRDPOS 141366
17-03-17 23:04:18.998 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 23:04:18.998 -07 000000415 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:04:18.998 -07 000000415 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-17 23:04:18.998 -07 000000415 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.839 mm, average velocity = 2.134 mm/sec
17-03-17 23:04:19.948 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:04:19.948 -07 000000547 INF: FPGA: Recv YRDPOS 141366
17-03-17 23:04:19.958 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:19.958 -07 000000415 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:04:19.978 -07 000000415 INF: Y Motor: After move to 69.042610, error = -0.016243, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:04:19.978 -07 000000415 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:04:19.978 -07 000000415 INF: Y Motor: Moved to 69.0264 after 1438 ms (table move)
17-03-17 23:04:19.988 -07 000000486 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175019 mm (DAC = 38233)
17-03-17 23:04:19.998 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:19.998 -07 000000618 INF: FPGA: Recv ZSGSRD 36537
17-03-17 23:04:19.998 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 71, FrontChillerTemperature: 3.989471,
17-03-17 23:04:20.008 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 23:04:20.018 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:20.018 -07 000000478 INF: FPGA: Recv ZSGSRD 36533
17-03-17 23:04:20.028 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:04:20.028 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:20.028 -07 000000623 INF: FPGA: Recv ZSGSRD 36535
17-03-17 23:04:20.038 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:20.058 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:20.058 -07 000000502 INF: FPGA: Recv ZSGSRD 36539
17-03-17 23:04:20.068 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:04:20.078 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:20.078 -07 000000576 INF: FPGA: Recv ZSGSRD 36536
17-03-17 23:04:20.088 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:04:20.088 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:20.088 -07 000000502 INF: FPGA: Recv ZSGSRD 36538
17-03-17 23:04:20.098 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:20.098 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:20.098 -07 000000618 INF: FPGA: Recv ZSGSRD 36533
17-03-17 23:04:20.108 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:20.108 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:20.108 -07 000000501 INF: FPGA: Recv ZSGSRD 36537
17-03-17 23:04:20.118 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:20.118 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:20.118 -07 000000478 INF: FPGA: Recv ZSGSRD 36533
17-03-17 23:04:20.128 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:20.128 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:20.128 -07 000000561 INF: FPGA: Recv ZSGSRD 36534
17-03-17 23:04:20.138 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:20.138 -07 000000486 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:04:20.138 -07 000000429 INF: FPGA: Recv ZPIEZORD 32765
17-03-17 23:04:20.148 -07 000000486 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:20.148 -07 000000486 INF: Z Motor: Piezo is near 50.0 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.834 V. Piezo Error = -8.3 V.
17-03-17 23:04:20.148 -07 000000486 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.0 um, Read 10 ADC samples: Avg = 36536 (-174.2 uncal um), Error = 0.9 uncal um, Median = 36536 (-174.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 36533 (-174.1 uncal um), Max = 36539 (-174.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 23:04:20.148 -07 000000486 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36536, posNoise = 3, negNoise = 3
17-03-17 23:04:20.148 -07 000000486 INF: Z Motor: After move to -0.175019, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:04:20.148 -07 000000486 INF: Z Motor: Settle wait time = 1441 ms, measure time = 158 ms (allowed 150 ms), total time = 1599 ms
17-03-17 23:04:20.148 -07 000000486 INF: Z Motor: Warning: Actual position measuring time = 158 ms, longer than max expected time of 150 ms
17-03-17 23:04:20.148 -07 000000486 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-17 23:04:20.148 -07 000000486 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:04:20.148 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:04:20.148 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:04:20.148 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:04:20.148 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:04:20.148 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:04:20.148 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:04:20.148 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 23:04:20.148 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:04:20.158 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:04:20.158 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:04:20.158 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 23:04:20.158 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 23:04:20.168 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:04:20.208 -07 000000448 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:04:20.408 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:04:20.408 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:04:20.408 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:04:20.408 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2567016040, 0x0, 559484976) start.
17-03-17 23:04:20.448 -07 000000486 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:04:20.448 -07 000000448 INF: FPGA: Recv CAMSNAP
17-03-17 23:04:20.448 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 284 ms overall
17-03-17 23:04:20.528 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2567016040, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 23:04:20.528 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:04:20.528 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:04:20.528 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 23:04:20.548 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:04:20.548 -07 000000502 INF: Autofocus start
17-03-17 23:04:20.548 -07 000000502 INF: MeasureProfile start
17-03-17 23:04:20.548 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:04:20.558 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:04:20.558 -07 000000593 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:04:20.568 -07 000000502 INF: MeasureProfile done
17-03-17 23:04:20.568 -07 000000502 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 23:04:20.568 -07 000000502 INF: Autofocus finished
17-03-17 23:04:20.758 -07 000000547 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:04:20.758 -07 000000593 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:04:20.758 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.0263671875, Z-position -0.175038366822513. ----------
17-03-17 23:04:20.758 -07 000000610 INF: Cycle	71	Tile	12	Exposure Settings		A	466	G	224	T	224	C	466
17-03-17 23:04:20.768 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36713, sync = True, waitForSettling = True)
17-03-17 23:04:20.768 -07 000000610 INF: Z Motor: Moving to -0.168061 mm, started at -0.175038 mm, distance = 6.98 um
17-03-17 23:04:20.768 -07 000000610 INF: FPGA: Xmit ZDACW 36713\n [Z Motor]
17-03-17 23:04:20.768 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 23:04:20.778 -07 000000610 INF: FPGA: 'ZDACW 36713' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:04:20.778 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:04:20.778 -07 000000623 INF: FPGA: Recv ZDACR 36713
17-03-17 23:04:20.788 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:20.788 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:04:20.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:20.938 -07 000000502 INF: FPGA: Recv ZSGSRD 35454
17-03-17 23:04:20.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:04:20.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:20.948 -07 000000486 INF: FPGA: Recv ZSGSRD 35452
17-03-17 23:04:20.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:20.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:20.958 -07 000000429 INF: FPGA: Recv ZSGSRD 35449
17-03-17 23:04:20.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:20.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:20.968 -07 000000482 INF: FPGA: Recv ZSGSRD 35451
17-03-17 23:04:20.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:20.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:20.978 -07 000000576 INF: FPGA: Recv ZSGSRD 35451
17-03-17 23:04:20.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:20.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:20.988 -07 000000409 INF: FPGA: Recv ZSGSRD 35454
17-03-17 23:04:20.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:20.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:20.998 -07 000000486 INF: FPGA: Recv ZSGSRD 35451
17-03-17 23:04:21.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:21.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:21.008 -07 000000551 INF: FPGA: Recv ZSGSRD 35453
17-03-17 23:04:21.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:21.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:21.018 -07 000000561 INF: FPGA: Recv ZSGSRD 35455
17-03-17 23:04:21.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:21.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:21.028 -07 000000623 INF: FPGA: Recv ZSGSRD 35451
17-03-17 23:04:21.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:21.038 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:04:21.038 -07 000000627 INF: FPGA: Recv ZPIEZORD 31282
17-03-17 23:04:21.048 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:21.048 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.602 V. Piezo Error = -9.2 V.
17-03-17 23:04:21.048 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.1 um, Read 10 ADC samples: Avg = 35452 (-167.2 uncal um), Error = 0.9 uncal um, Median = 35452 (-167.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35449 (-167.2 uncal um), Max = 35455 (-167.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 23:04:21.048 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35452, posNoise = 3, negNoise = 3
17-03-17 23:04:21.048 -07 000000610 INF: Z Motor: After move to -0.168061, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:04:21.048 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 23:04:21.048 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:04:21.048 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:04:21.048 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:04:21.048 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:04:21.048 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:04:21.048 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:04:21.048 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:04:21.048 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:04:21.048 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:04:21.048 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:04:21.048 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:04:21.048 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:04:21.058 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 23:04:21.058 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:04:21.058 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:04:21.058 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:04:21.068 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 23:04:21.068 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 23:04:21.068 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 23:04:21.068 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 23:04:21.068 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 466 466 224 224 36890 150\n [Camera]
17-03-17 23:04:21.268 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:04:21.738 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 658
17-03-17 23:04:21.738 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 658
17-03-17 23:04:21.738 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:04:21.738 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:04:21.738 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 23:04:21.738 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 658
17-03-17 23:04:21.738 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 658
17-03-17 23:04:21.738 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:04:21.738 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:04:21.738 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-17 23:04:21.928 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36890 851
17-03-17 23:04:22.028 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:04:22.028 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 70. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1132, R2=1178, Total=2310. Warn if over 250 bubbles per interval.
17-03-17 23:04:22.078 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1001
17-03-17 23:04:22.128 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 23:04:22.128 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 23:04:22.128 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:04:22.128 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 23:04:22.128 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 23:04:22.128 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:04:22.128 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:04:22.128 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 23:04:22.138 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:04:22.138 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 23:04:22.308 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1225
17-03-17 23:04:22.308 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1225
17-03-17 23:04:22.308 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:04:22.308 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:04:22.308 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-17 23:04:22.308 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1225
17-03-17 23:04:22.308 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1225
17-03-17 23:04:22.308 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:04:22.308 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:04:22.308 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 23:04:22.498 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1418
17-03-17 23:04:22.498 -07 000000551 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:04:22.498 -07 000000610 INF: FPGA: 'CAMDBLSNAP 466 466 224 224 36890 150' command took 2 ms to send, 1412 ms to get response, and 1425 ms overall
17-03-17 23:04:22.498 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:04:22.498 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.0263671875, Z-Position -0.168074520860844. ------
17-03-17 23:04:22.498 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:04:22.498 -07 000000627 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17444 mm
17-03-17 23:04:22.498 -07 000000627 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:04:22.618 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:04:22.618 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 113 ms overall
17-03-17 23:04:22.618 -07 000000475 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:04:22.618 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 23:04:22.618 -07 000000576 INF: Y Motor: Moving to 69.8726 mm, started at 69.0264 mm, delta = 0.8462 mm
17-03-17 23:04:22.618 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 38106, sync = True, waitForSettling = False)
17-03-17 23:04:22.618 -07 000000551 INF: Z Motor: Moving to -0.174438 mm, started at -0.168075 mm, distance = -6.36 um
17-03-17 23:04:22.628 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:04:22.628 -07 000000541 INF: FPGA: Recv YRDPOS 141367
17-03-17 23:04:22.638 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 23:04:22.638 -07 000000551 INF: FPGA: Xmit ZDACW 38106\n [Z Motor]
17-03-17 23:04:22.638 -07 000000576 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:04:22.638 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 23:04:22.638 -07 000000576 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:04:22.638 -07 000000576 INF: Y Motor: Moving 1353 steps-33
17-03-17 23:04:22.648 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:04:22.648 -07 000000551 INF: FPGA: 'ZDACW 38106' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 23:04:22.658 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:04:22.658 -07 000000561 INF: FPGA: Recv ZDACR 38106
17-03-17 23:04:22.668 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:04:22.668 -07 000000551 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-17 23:04:22.698 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 23:04:22.698 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 23:04:22.708 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:04:22.708 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 23:04:22.708 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 23:04:22.708 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:04:22.708 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:04:22.708 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 23:04:22.708 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 23:04:22.718 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 23:04:22.818 -07 000000623 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:04:22.818 -07 000000475 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 23:04:23.018 -07 000000541 INF: FPGA: Recv YMVTILE
17-03-17 23:04:23.018 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-17 23:04:23.058 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:04:23.068 -07 000000551 INF: FPGA: Recv YRDPOS 143078
17-03-17 23:04:23.068 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 23:04:23.068 -07 000000576 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:04:23.068 -07 000000576 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-17 23:04:23.068 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.846 mm, average velocity = 2.204 mm/sec
17-03-17 23:04:24.018 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:04:24.018 -07 000000593 INF: FPGA: Recv YRDPOS 143078
17-03-17 23:04:24.028 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:04:24.028 -07 000000576 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:04:24.048 -07 000000576 INF: Y Motor: After move to 69.872612, error = -0.010307, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:04:24.048 -07 000000576 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:04:24.048 -07 000000576 INF: Y Motor: Moved to 69.8623 after 1434 ms (table move)
17-03-17 23:04:24.058 -07 000000627 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174438 mm (DAC = 38106)
17-03-17 23:04:24.058 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:24.058 -07 000000462 INF: FPGA: Recv ZSGSRD 36445
17-03-17 23:04:24.068 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:24.068 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:24.068 -07 000000576 INF: FPGA: Recv ZSGSRD 36450
17-03-17 23:04:24.078 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:24.078 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:24.078 -07 000000541 INF: FPGA: Recv ZSGSRD 36445
17-03-17 23:04:24.088 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:24.088 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:24.088 -07 000000623 INF: FPGA: Recv ZSGSRD 36453
17-03-17 23:04:24.098 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:24.098 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:24.098 -07 000000547 INF: FPGA: Recv ZSGSRD 36447
17-03-17 23:04:24.108 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:24.108 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:24.108 -07 000000502 INF: FPGA: Recv ZSGSRD 36441
17-03-17 23:04:24.118 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:24.118 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:24.118 -07 000000547 INF: FPGA: Recv ZSGSRD 36441
17-03-17 23:04:24.128 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:24.128 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:24.128 -07 000000502 INF: FPGA: Recv ZSGSRD 36444
17-03-17 23:04:24.138 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:24.138 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:24.138 -07 000000623 INF: FPGA: Recv ZSGSRD 36443
17-03-17 23:04:24.148 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:24.148 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:24.148 -07 000000618 INF: FPGA: Recv ZSGSRD 36441
17-03-17 23:04:24.158 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:24.158 -07 000000627 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:04:24.158 -07 000000482 INF: FPGA: Recv ZPIEZORD 32633
17-03-17 23:04:24.168 -07 000000627 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:24.168 -07 000000627 INF: Z Motor: Piezo is near 49.7 V (nominally 0 to 100 V), expect near 58.1 V, since DAC is at 5.815 V. Piezo Error = -8.4 V.
17-03-17 23:04:24.168 -07 000000627 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.4 um, Read 10 ADC samples: Avg = 36445 (-173.6 uncal um), Error = 0.9 uncal um, Median = 36444 (-173.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36441 (-173.5 uncal um), Max = 36453 (-173.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:04:24.168 -07 000000627 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36445, posNoise = 8, negNoise = 4
17-03-17 23:04:24.168 -07 000000627 INF: Z Motor: After move to -0.174438, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:04:24.168 -07 000000627 INF: Z Motor: Settle wait time = 1437 ms, measure time = 111 ms (allowed 150 ms), total time = 1548 ms
17-03-17 23:04:24.168 -07 000000627 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 23:04:24.208 -07 000000627 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1702 ms
17-03-17 23:04:24.208 -07 000000627 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:04:24.208 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:04:24.208 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:04:24.208 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:04:24.208 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:04:24.208 -07 000000409 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:04:24.208 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:04:24.208 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:04:24.208 -07 000000409 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:04:24.218 -07 000000409 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:04:24.218 -07 000000409 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:04:24.218 -07 000000409 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 23:04:24.218 -07 000000409 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 23:04:24.228 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:04:24.268 -07 000000486 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:04:24.468 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:04:24.468 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:04:24.468 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:04:24.468 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 23:04:24.508 -07 000000475 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:04:24.508 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-17 23:04:24.508 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 286 ms overall
17-03-17 23:04:24.588 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 23:04:24.588 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:04:24.588 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:04:24.588 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 23:04:24.608 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:04:24.608 -07 000000482 INF: Autofocus start
17-03-17 23:04:24.608 -07 000000482 INF: MeasureProfile start
17-03-17 23:04:24.608 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:04:24.618 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:04:24.618 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:04:24.618 -07 000000482 INF: MeasureProfile done
17-03-17 23:04:24.618 -07 000000482 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 23:04:24.618 -07 000000482 INF: Autofocus finished
17-03-17 23:04:24.818 -07 000000627 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:04:24.818 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:04:24.818 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.8623046875, Z-position -0.174453763517613. ----------
17-03-17 23:04:24.818 -07 000000610 INF: Cycle	71	Tile	13	Exposure Settings		A	466	G	224	T	224	C	466
17-03-17 23:04:24.828 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36586, sync = True, waitForSettling = True)
17-03-17 23:04:24.828 -07 000000610 INF: Z Motor: Moving to -0.167480 mm, started at -0.174454 mm, distance = 6.97 um
17-03-17 23:04:24.828 -07 000000610 INF: FPGA: Xmit ZDACW 36586\n [Z Motor]
17-03-17 23:04:24.828 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 23:04:24.838 -07 000000610 INF: FPGA: 'ZDACW 36586' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:04:24.838 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:04:24.838 -07 000000561 INF: FPGA: Recv ZDACR 36586
17-03-17 23:04:24.848 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:24.848 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:04:24.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:24.998 -07 000000429 INF: FPGA: Recv ZSGSRD 35358
17-03-17 23:04:25.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:04:25.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:25.008 -07 000000415 INF: FPGA: Recv ZSGSRD 35369
17-03-17 23:04:25.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:25.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:25.018 -07 000000448 INF: FPGA: Recv ZSGSRD 35369
17-03-17 23:04:25.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:25.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:25.028 -07 000000482 INF: FPGA: Recv ZSGSRD 35359
17-03-17 23:04:25.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:25.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:25.038 -07 000000551 INF: FPGA: Recv ZSGSRD 35359
17-03-17 23:04:25.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:25.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:25.048 -07 000000593 INF: FPGA: Recv ZSGSRD 35365
17-03-17 23:04:25.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:25.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:25.058 -07 000000502 INF: FPGA: Recv ZSGSRD 35361
17-03-17 23:04:25.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:25.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:25.068 -07 000000541 INF: FPGA: Recv ZSGSRD 35360
17-03-17 23:04:25.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:25.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:25.088 -07 000000415 INF: FPGA: Recv ZSGSRD 35361
17-03-17 23:04:25.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:04:25.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:25.098 -07 000000618 INF: FPGA: Recv ZSGSRD 35365
17-03-17 23:04:25.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:25.108 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:04:25.108 -07 000000486 INF: FPGA: Recv ZPIEZORD 31194
17-03-17 23:04:25.118 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:25.118 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.583 V. Piezo Error = -9.2 V.
17-03-17 23:04:25.118 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.5 um, Read 10 ADC samples: Avg = 35363 (-166.6 uncal um), Error = 0.8 uncal um, Median = 35361 (-166.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35358 (-166.6 uncal um), Max = 35369 (-166.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:04:25.118 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35363, posNoise = 6, negNoise = 5
17-03-17 23:04:25.118 -07 000000610 INF: Z Motor: After move to -0.167480, error = -0.000023, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:04:25.118 -07 000000610 INF: Z Motor: MoveAbsStepped took 290 ms)
17-03-17 23:04:25.118 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:04:25.118 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:04:25.118 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:04:25.118 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:04:25.118 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:04:25.118 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:04:25.118 -07 000000409 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:04:25.118 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:04:25.118 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:04:25.118 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:04:25.118 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:04:25.118 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:04:25.128 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 23:04:25.128 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:04:25.128 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:04:25.128 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:04:25.138 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 23:04:25.138 -07 000000409 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 23:04:25.138 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 23:04:25.138 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 23:04:25.138 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 466 466 224 224 36763 150\n [Camera]
17-03-17 23:04:25.338 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:04:25.398 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 71, FrontChillerTemperature: 4.02213,
17-03-17 23:04:25.808 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 660
17-03-17 23:04:25.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 660
17-03-17 23:04:25.808 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:04:25.808 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 660
17-03-17 23:04:25.808 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 660
17-03-17 23:04:25.808 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:04:25.818 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:04:25.818 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 23:04:25.818 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:04:25.818 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 23:04:25.998 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36763 851
17-03-17 23:04:26.148 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1001
17-03-17 23:04:26.198 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 23:04:26.198 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 23:04:26.198 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:04:26.198 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 23:04:26.208 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 23:04:26.208 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:04:26.208 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:04:26.208 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 23:04:26.208 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:04:26.218 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 23:04:26.378 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1225
17-03-17 23:04:26.378 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1225
17-03-17 23:04:26.378 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:04:26.378 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1225
17-03-17 23:04:26.378 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1225
17-03-17 23:04:26.378 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:04:26.378 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:04:26.378 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-17 23:04:26.388 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:04:26.388 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-17 23:04:26.568 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP 1418
17-03-17 23:04:26.568 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:04:26.568 -07 000000610 INF: FPGA: 'CAMDBLSNAP 466 466 224 224 36763 150' command took 2 ms to send, 1412 ms to get response, and 1425 ms overall
17-03-17 23:04:26.568 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:04:26.568 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.8623046875, Z-Position -0.167502765980228. ------
17-03-17 23:04:26.688 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:04:26.688 -07 000000448 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17389 mm
17-03-17 23:04:26.688 -07 000000448 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:04:26.688 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:04:26.688 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 37986, sync = True, waitForSettling = False)
17-03-17 23:04:26.688 -07 000000627 INF: Z Motor: Moving to -0.173889 mm, started at -0.167503 mm, distance = -6.39 um
17-03-17 23:04:26.688 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 23:04:26.688 -07 000000618 INF: Y Motor: Moving to 70.7026 mm, started at 69.8623 mm, delta = 0.8403 mm
17-03-17 23:04:26.698 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:04:26.698 -07 000000627 INF: FPGA: Xmit ZDACW 37986\n [Z Motor]
17-03-17 23:04:26.698 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 23:04:26.708 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:04:26.708 -07 000000627 INF: FPGA: 'ZDACW 37986' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 23:04:26.708 -07 000000429 INF: FPGA: Recv YRDPOS 143079
17-03-17 23:04:26.718 -07 000000547 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:04:26.718 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 23:04:26.718 -07 000000618 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:04:26.718 -07 000000618 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:04:26.718 -07 000000618 INF: Y Motor: Moving 1344 steps-21
17-03-17 23:04:26.728 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:04:26.728 -07 000000482 INF: FPGA: Recv ZDACR 37986
17-03-17 23:04:26.738 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:04:26.738 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:04:26.738 -07 000000627 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 23:04:26.778 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 23:04:26.778 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 23:04:26.778 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:04:26.778 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 23:04:26.778 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 23:04:26.778 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:04:26.778 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:04:26.788 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:04:26.788 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 23:04:26.788 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 23:04:26.918 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:04:26.918 -07 000000547 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 23:04:27.028 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:04:27.028 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 70. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1132, R2=1178, Total=2310. Warn if over 250 bubbles per interval.
17-03-17 23:04:27.108 -07 000000547 INF: FPGA: Recv YMVTILE
17-03-17 23:04:27.108 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 23:04:27.148 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:04:27.158 -07 000000429 INF: FPGA: Recv YRDPOS 144769
17-03-17 23:04:27.158 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 23:04:27.158 -07 000000618 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:04:27.158 -07 000000618 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 23:04:27.158 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.840 mm, average velocity = 2.133 mm/sec
17-03-17 23:04:28.108 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:04:28.108 -07 000000382 INF: FPGA: Recv YRDPOS 144769
17-03-17 23:04:28.118 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:04:28.118 -07 000000618 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:04:28.138 -07 000000618 INF: Y Motor: After move to 70.702606, error = -0.014618, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:04:28.138 -07 000000618 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:04:28.138 -07 000000618 INF: Y Motor: Moved to 70.6880 after 1447 ms (table move)
17-03-17 23:04:28.138 -07 000000448 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173889 mm (DAC = 37986)
17-03-17 23:04:28.138 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:28.148 -07 000000478 INF: FPGA: Recv ZSGSRD 36365
17-03-17 23:04:28.148 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 23:04:28.148 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:28.148 -07 000000462 INF: FPGA: Recv ZSGSRD 36352
17-03-17 23:04:28.158 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:04:28.158 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:28.158 -07 000000475 INF: FPGA: Recv ZSGSRD 36359
17-03-17 23:04:28.168 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:28.168 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:28.168 -07 000000502 INF: FPGA: Recv ZSGSRD 36363
17-03-17 23:04:28.178 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:28.178 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:28.178 -07 000000501 INF: FPGA: Recv ZSGSRD 36358
17-03-17 23:04:28.188 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:28.188 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:28.188 -07 000000478 INF: FPGA: Recv ZSGSRD 36365
17-03-17 23:04:28.198 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:28.198 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:28.198 -07 000000593 INF: FPGA: Recv ZSGSRD 36356
17-03-17 23:04:28.208 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:28.208 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:28.208 -07 000000541 INF: FPGA: Recv ZSGSRD 36360
17-03-17 23:04:28.218 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:28.218 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:28.218 -07 000000627 INF: FPGA: Recv ZSGSRD 36354
17-03-17 23:04:28.228 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:28.228 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:28.228 -07 000000623 INF: FPGA: Recv ZSGSRD 36358
17-03-17 23:04:28.238 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:28.238 -07 000000448 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:04:28.238 -07 000000415 INF: FPGA: Recv ZPIEZORD 32540
17-03-17 23:04:28.248 -07 000000448 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:28.248 -07 000000448 INF: Z Motor: Piezo is near 49.5 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.796 V. Piezo Error = -8.4 V.
17-03-17 23:04:28.248 -07 000000448 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.9 um, Read 10 ADC samples: Avg = 36359 (-173.0 uncal um), Error = 0.9 uncal um, Median = 36358 (-173.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36352 (-173.0 uncal um), Max = 36365 (-173.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 23:04:28.248 -07 000000448 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36359, posNoise = 6, negNoise = 7
17-03-17 23:04:28.248 -07 000000448 INF: Z Motor: After move to -0.173889, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:04:28.248 -07 000000448 INF: Z Motor: Settle wait time = 1451 ms, measure time = 101 ms (allowed 150 ms), total time = 1552 ms
17-03-17 23:04:28.248 -07 000000448 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 23:04:28.298 -07 000000448 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-17 23:04:28.298 -07 000000448 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:04:28.298 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:04:28.298 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:04:28.298 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:04:28.298 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:04:28.308 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:04:28.308 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:04:28.308 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:04:28.308 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:04:28.308 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:04:28.308 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:04:28.318 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 23:04:28.318 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 23:04:28.318 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:04:28.358 -07 000000547 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:04:28.558 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:04:28.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:04:28.558 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:04:28.568 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 23:04:28.598 -07 000000429 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:04:28.598 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-17 23:04:28.598 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 23:04:28.678 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 23:04:28.678 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:04:28.678 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:04:28.678 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 23:04:28.698 -07 000000448 INF: Autofocus start
17-03-17 23:04:28.698 -07 000000448 INF: MeasureProfile start
17-03-17 23:04:28.698 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:04:28.698 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:04:28.708 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:04:28.708 -07 000000475 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:04:28.708 -07 000000448 INF: MeasureProfile done
17-03-17 23:04:28.708 -07 000000448 INF: X=32  Z correction [um]=0.09220707
17-03-17 23:04:28.708 -07 000000448 INF: Autofocus finished
17-03-17 23:04:28.908 -07 000000541 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:04:28.908 -07 000000475 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-17 23:04:28.908 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68798828125, Z-position -0.173901281273422. ----------
17-03-17 23:04:28.918 -07 000000610 INF: Cycle	71	Tile	14	Exposure Settings		A	466	G	224	T	224	C	466
17-03-17 23:04:28.918 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36519, sync = True, waitForSettling = True)
17-03-17 23:04:28.918 -07 000000610 INF: Z Motor: Moving to -0.167173 mm, started at -0.173901 mm, distance = 6.73 um
17-03-17 23:04:28.918 -07 000000610 INF: FPGA: Xmit ZDACW 36519\n [Z Motor]
17-03-17 23:04:28.918 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 23:04:28.928 -07 000000610 INF: FPGA: 'ZDACW 36519' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:04:28.928 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:04:28.928 -07 000000478 INF: FPGA: Recv ZDACR 36519
17-03-17 23:04:28.938 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:28.938 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:04:29.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:29.088 -07 000000409 INF: FPGA: Recv ZSGSRD 35316
17-03-17 23:04:29.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:29.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:29.098 -07 000000429 INF: FPGA: Recv ZSGSRD 35311
17-03-17 23:04:29.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:29.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:29.108 -07 000000482 INF: FPGA: Recv ZSGSRD 35316
17-03-17 23:04:29.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:29.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:29.118 -07 000000593 INF: FPGA: Recv ZSGSRD 35315
17-03-17 23:04:29.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:29.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:29.128 -07 000000486 INF: FPGA: Recv ZSGSRD 35314
17-03-17 23:04:29.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:29.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:29.138 -07 000000541 INF: FPGA: Recv ZSGSRD 35316
17-03-17 23:04:29.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:29.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:29.148 -07 000000551 INF: FPGA: Recv ZSGSRD 35309
17-03-17 23:04:29.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:29.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:29.158 -07 000000623 INF: FPGA: Recv ZSGSRD 35312
17-03-17 23:04:29.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:29.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:29.168 -07 000000593 INF: FPGA: Recv ZSGSRD 35321
17-03-17 23:04:29.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:29.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:29.178 -07 000000486 INF: FPGA: Recv ZSGSRD 35313
17-03-17 23:04:29.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:29.188 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:04:29.188 -07 000000409 INF: FPGA: Recv ZPIEZORD 31132
17-03-17 23:04:29.198 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:29.198 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.572 V. Piezo Error = -9.2 V.
17-03-17 23:04:29.198 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.2 um, Read 10 ADC samples: Avg = 35314 (-166.3 uncal um), Error = 0.9 uncal um, Median = 35314 (-166.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35309 (-166.3 uncal um), Max = 35321 (-166.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:04:29.198 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35314, posNoise = 7, negNoise = 5
17-03-17 23:04:29.198 -07 000000610 INF: Z Motor: After move to -0.167173, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:04:29.198 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 23:04:29.198 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:04:29.198 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:04:29.198 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:04:29.198 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:04:29.198 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:04:29.198 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:04:29.198 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:04:29.198 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:04:29.198 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:04:29.198 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:04:29.198 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:04:29.198 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:04:29.208 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 23:04:29.208 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:04:29.208 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 23:04:29.208 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:04:29.218 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 23:04:29.218 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:04:29.218 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 23:04:29.218 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:04:29.228 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 466 466 224 224 36696 150\n [Camera]
17-03-17 23:04:29.418 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:04:29.888 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 658
17-03-17 23:04:29.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 658
17-03-17 23:04:29.888 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:04:29.888 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 658
17-03-17 23:04:29.888 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 658
17-03-17 23:04:29.898 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:04:29.898 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:04:29.898 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 23:04:29.898 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:04:29.898 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 23:04:30.078 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36696 851
17-03-17 23:04:30.228 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1001
17-03-17 23:04:30.278 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 23:04:30.278 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 23:04:30.278 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:04:30.278 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 23:04:30.278 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 23:04:30.278 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:04:30.278 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 23:04:30.278 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:04:30.278 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 23:04:30.288 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 23:04:30.458 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1225
17-03-17 23:04:30.458 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1225
17-03-17 23:04:30.458 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:04:30.458 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1225
17-03-17 23:04:30.458 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1225
17-03-17 23:04:30.458 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:04:30.458 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:04:30.458 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 23:04:30.468 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:04:30.468 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2602438304, 0x0, 391868352) start.
17-03-17 23:04:30.648 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP 1418
17-03-17 23:04:30.648 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:04:30.648 -07 000000610 INF: FPGA: 'CAMDBLSNAP 466 466 224 224 36696 150' command took 2 ms to send, 1415 ms to get response, and 1425 ms overall
17-03-17 23:04:30.648 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:04:30.648 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68798828125, Z-Position -0.167187979585281. ------
17-03-17 23:04:30.658 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:04:30.658 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17332 mm
17-03-17 23:04:30.658 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:04:30.658 -07 000000409 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:04:30.658 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 23:04:30.658 -07 000000576 INF: Y Motor: Moving to 71.5326 mm, started at 70.6880 mm, delta = 0.8446 mm
17-03-17 23:04:30.658 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 37863, sync = True, waitForSettling = False)
17-03-17 23:04:30.658 -07 000000561 INF: Z Motor: Moving to -0.173326 mm, started at -0.167188 mm, distance = -6.14 um
17-03-17 23:04:30.668 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:04:30.668 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:04:30.668 -07 000000429 INF: FPGA: Recv YRDPOS 144769
17-03-17 23:04:30.678 -07 000000561 INF: FPGA: Xmit ZDACW 37863\n [Z Motor]
17-03-17 23:04:30.678 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 23:04:30.678 -07 000000576 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:04:30.678 -07 000000576 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:04:30.678 -07 000000576 INF: Y Motor: Moving 1351 steps-30
17-03-17 23:04:30.678 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 23:04:30.688 -07 000000627 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:04:30.688 -07 000000561 INF: FPGA: 'ZDACW 37863' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 23:04:30.698 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:04:30.708 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:04:30.708 -07 000000593 INF: FPGA: Recv ZDACR 37863
17-03-17 23:04:30.718 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:04:30.718 -07 000000561 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 23:04:30.758 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 71, FrontChillerTemperature: 4.038479,
17-03-17 23:04:30.858 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2602438304, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 23:04:30.858 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 23:04:30.858 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:04:30.858 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 23:04:30.858 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 23:04:30.858 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:04:30.858 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:04:30.858 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 23:04:30.858 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:04:30.868 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 23:04:30.888 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:04:30.888 -07 000000627 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 23:04:31.068 -07 000000551 INF: FPGA: Recv YMVTILE
17-03-17 23:04:31.068 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 23:04:31.118 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:04:31.118 -07 000000478 INF: FPGA: Recv YRDPOS 146469
17-03-17 23:04:31.128 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:04:31.128 -07 000000576 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:04:31.128 -07 000000576 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 23:04:31.128 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.128 mm/sec
17-03-17 23:04:32.028 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:04:32.028 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 70. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1132, R2=1178, Total=2310. Warn if over 250 bubbles per interval.
17-03-17 23:04:32.078 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:04:32.078 -07 000000429 INF: FPGA: Recv YRDPOS 146470
17-03-17 23:04:32.088 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:04:32.088 -07 000000576 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:04:32.108 -07 000000576 INF: Y Motor: After move to 71.532608, error = -0.014053, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:04:32.108 -07 000000576 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 23:04:32.108 -07 000000576 INF: Y Motor: Moved to 71.5186 after 1449 ms (table move)
17-03-17 23:04:32.108 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173326 mm (DAC = 37863)
17-03-17 23:04:32.108 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:32.118 -07 000000547 INF: FPGA: Recv ZSGSRD 36268
17-03-17 23:04:32.118 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 4 ms to get response, and 4 ms overall
17-03-17 23:04:32.118 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:32.118 -07 000000561 INF: FPGA: Recv ZSGSRD 36275
17-03-17 23:04:32.128 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:04:32.128 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:32.128 -07 000000475 INF: FPGA: Recv ZSGSRD 36272
17-03-17 23:04:32.138 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:32.138 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:32.138 -07 000000502 INF: FPGA: Recv ZSGSRD 36272
17-03-17 23:04:32.148 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:32.148 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:32.148 -07 000000541 INF: FPGA: Recv ZSGSRD 36276
17-03-17 23:04:32.158 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:32.158 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:32.158 -07 000000551 INF: FPGA: Recv ZSGSRD 36271
17-03-17 23:04:32.168 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:32.168 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:32.168 -07 000000486 INF: FPGA: Recv ZSGSRD 36275
17-03-17 23:04:32.178 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:32.178 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:32.178 -07 000000561 INF: FPGA: Recv ZSGSRD 36273
17-03-17 23:04:32.188 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:32.188 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:32.188 -07 000000501 INF: FPGA: Recv ZSGSRD 36267
17-03-17 23:04:32.198 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:32.198 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:32.198 -07 000000627 INF: FPGA: Recv ZSGSRD 36271
17-03-17 23:04:32.208 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:32.208 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:04:32.208 -07 000000541 INF: FPGA: Recv ZPIEZORD 32397
17-03-17 23:04:32.218 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:32.218 -07 000000462 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.778 V. Piezo Error = -8.6 V.
17-03-17 23:04:32.218 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.3 um, Read 10 ADC samples: Avg = 36272 (-172.5 uncal um), Error = 0.9 uncal um, Median = 36272 (-172.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36267 (-172.4 uncal um), Max = 36276 (-172.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:04:32.218 -07 000000462 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36272, posNoise = 4, negNoise = 5
17-03-17 23:04:32.218 -07 000000462 INF: Z Motor: After move to -0.173326, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:04:32.218 -07 000000462 INF: Z Motor: Settle wait time = 1451 ms, measure time = 101 ms (allowed 150 ms), total time = 1552 ms
17-03-17 23:04:32.218 -07 000000462 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 23:04:32.268 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-17 23:04:32.268 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:04:32.268 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:04:32.268 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:04:32.268 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:04:32.268 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:04:32.268 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:04:32.268 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:04:32.278 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:04:32.278 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:04:32.278 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:04:32.278 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:04:32.288 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 23:04:32.288 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 23:04:32.288 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:04:32.328 -07 000000593 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:04:32.528 -07 000000547 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:04:32.528 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:04:32.538 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:04:32.538 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2567016040, 0x0, 559484976) start.
17-03-17 23:04:32.568 -07 000000486 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:04:32.568 -07 000000541 INF: FPGA: Recv CAMSNAP
17-03-17 23:04:32.568 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 23:04:32.648 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2567016040, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 23:04:32.648 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:04:32.648 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:04:32.648 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 23:04:32.668 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:04:32.668 -07 000000561 INF: Autofocus start
17-03-17 23:04:32.668 -07 000000561 INF: MeasureProfile start
17-03-17 23:04:32.668 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:04:32.678 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:04:32.678 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:04:32.678 -07 000000561 INF: MeasureProfile done
17-03-17 23:04:32.678 -07 000000561 INF: X=128  Z correction [um]=0.5828849
17-03-17 23:04:32.678 -07 000000561 INF: Autofocus finished
17-03-17 23:04:32.878 -07 000000627 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:04:32.878 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:04:32.878 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.5185546875, Z-position -0.173342374817088. ----------
17-03-17 23:04:32.878 -07 000000610 INF: Cycle	71	Tile	15	Exposure Settings		A	466	G	224	T	224	C	466
17-03-17 23:04:32.888 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36502, sync = True, waitForSettling = True)
17-03-17 23:04:32.888 -07 000000610 INF: Z Motor: Moving to -0.167095 mm, started at -0.173342 mm, distance = 6.25 um
17-03-17 23:04:32.888 -07 000000610 INF: FPGA: Xmit ZDACW 36502\n [Z Motor]
17-03-17 23:04:32.888 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 23:04:32.898 -07 000000610 INF: FPGA: 'ZDACW 36502' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:32.898 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:04:32.898 -07 000000501 INF: FPGA: Recv ZDACR 36502
17-03-17 23:04:32.908 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:32.908 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:04:33.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:33.058 -07 000000618 INF: FPGA: Recv ZSGSRD 35303
17-03-17 23:04:33.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:04:33.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:33.068 -07 000000475 INF: FPGA: Recv ZSGSRD 35304
17-03-17 23:04:33.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:33.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:33.078 -07 000000593 INF: FPGA: Recv ZSGSRD 35294
17-03-17 23:04:33.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:33.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:33.088 -07 000000448 INF: FPGA: Recv ZSGSRD 35301
17-03-17 23:04:33.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:33.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:33.098 -07 000000475 INF: FPGA: Recv ZSGSRD 35305
17-03-17 23:04:33.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:33.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:33.108 -07 000000502 INF: FPGA: Recv ZSGSRD 35300
17-03-17 23:04:33.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:33.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:33.118 -07 000000623 INF: FPGA: Recv ZSGSRD 35299
17-03-17 23:04:33.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:33.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:33.128 -07 000000593 INF: FPGA: Recv ZSGSRD 35306
17-03-17 23:04:33.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:33.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:33.138 -07 000000429 INF: FPGA: Recv ZSGSRD 35303
17-03-17 23:04:33.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:33.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:33.148 -07 000000475 INF: FPGA: Recv ZSGSRD 35300
17-03-17 23:04:33.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:33.158 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:04:33.158 -07 000000551 INF: FPGA: Recv ZPIEZORD 31127
17-03-17 23:04:33.168 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:33.168 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.570 V. Piezo Error = -9.2 V.
17-03-17 23:04:33.168 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.1 um, Read 10 ADC samples: Avg = 35302 (-166.2 uncal um), Error = 0.9 uncal um, Median = 35302 (-166.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35294 (-166.2 uncal um), Max = 35306 (-166.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 23:04:33.168 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35302, posNoise = 4, negNoise = 8
17-03-17 23:04:33.168 -07 000000610 INF: Z Motor: After move to -0.167095, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:04:33.168 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 23:04:33.168 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:04:33.168 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:04:33.168 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:04:33.168 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:04:33.168 -07 000000409 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:04:33.168 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:04:33.168 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:04:33.168 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:04:33.168 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:04:33.168 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:04:33.168 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:04:33.168 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:04:33.178 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:04:33.178 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:04:33.178 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:04:33.178 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:04:33.178 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 23:04:33.178 -07 000000409 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:04:33.188 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 23:04:33.188 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:04:33.188 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 466 466 224 224 36679 150\n [Camera]
17-03-17 23:04:33.388 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:04:33.848 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 658
17-03-17 23:04:33.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 658
17-03-17 23:04:33.858 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:04:33.858 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:04:33.858 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 23:04:33.858 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 658
17-03-17 23:04:33.858 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 658
17-03-17 23:04:33.858 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:04:33.858 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:04:33.858 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-17 23:04:34.048 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36679 851
17-03-17 23:04:34.198 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1001
17-03-17 23:04:34.238 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 23:04:34.238 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 23:04:34.238 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:04:34.238 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 23:04:34.238 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 23:04:34.238 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:04:34.248 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:04:34.248 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 23:04:34.248 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:04:34.248 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 23:04:34.418 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1225
17-03-17 23:04:34.418 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1225
17-03-17 23:04:34.418 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:04:34.418 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:04:34.418 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-17 23:04:34.418 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1225
17-03-17 23:04:34.428 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1225
17-03-17 23:04:34.428 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:04:34.428 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:04:34.428 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 23:04:34.608 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1418
17-03-17 23:04:34.608 -07 000000541 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:04:34.608 -07 000000610 INF: FPGA: 'CAMDBLSNAP 466 466 224 224 36679 150' command took 2 ms to send, 1419 ms to get response, and 1425 ms overall
17-03-17 23:04:34.728 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:04:34.728 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.5185546875, Z-Position -0.16711088903958. ------
17-03-17 23:04:34.728 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:04:34.728 -07 000000482 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17356 mm
17-03-17 23:04:34.728 -07 000000482 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:04:34.728 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:04:34.728 -07 000000415 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 23:04:34.728 -07 000000415 INF: Y Motor: Moving to 72.3626 mm, started at 71.5186 mm, delta = 0.8441 mm
17-03-17 23:04:34.728 -07 000000409 INF: Z Motor: Entering MoveAbsStepped (DAC = 37915, sync = True, waitForSettling = False)
17-03-17 23:04:34.728 -07 000000409 INF: Z Motor: Moving to -0.173564 mm, started at -0.167111 mm, distance = -6.45 um
17-03-17 23:04:34.738 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:04:34.738 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:04:34.738 -07 000000561 INF: FPGA: Recv YRDPOS 146470
17-03-17 23:04:34.748 -07 000000409 INF: FPGA: Xmit ZDACW 37915\n [Z Motor]
17-03-17 23:04:34.748 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 23:04:34.748 -07 000000415 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:04:34.748 -07 000000415 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:04:34.748 -07 000000415 INF: Y Motor: Moving 1350 steps-30
17-03-17 23:04:34.748 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 23:04:34.758 -07 000000475 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:04:34.758 -07 000000409 INF: FPGA: 'ZDACW 37915' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 23:04:34.768 -07 000000415 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:04:34.778 -07 000000409 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:04:34.778 -07 000000551 INF: FPGA: Recv ZDACR 37915
17-03-17 23:04:34.788 -07 000000409 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:04:34.788 -07 000000409 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-17 23:04:34.818 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 23:04:34.818 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 23:04:34.818 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:04:34.818 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 23:04:34.818 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 23:04:34.818 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:04:34.828 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:04:34.828 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 23:04:34.828 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 23:04:34.828 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 23:04:34.958 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:04:34.958 -07 000000475 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 23:04:35.138 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-17 23:04:35.138 -07 000000415 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 23:04:35.178 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:04:35.188 -07 000000547 INF: FPGA: Recv YRDPOS 148171
17-03-17 23:04:35.188 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 23:04:35.188 -07 000000415 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:04:35.188 -07 000000415 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 23:04:35.188 -07 000000415 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.126 mm/sec
17-03-17 23:04:36.128 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 71, FrontChillerTemperature: 4.045313,
17-03-17 23:04:36.138 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:04:36.138 -07 000000409 INF: FPGA: Recv YRDPOS 148171
17-03-17 23:04:36.148 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:04:36.148 -07 000000415 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:04:36.168 -07 000000415 INF: Y Motor: After move to 72.362610, error = -0.013489, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:04:36.168 -07 000000415 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:04:36.168 -07 000000415 INF: Y Motor: Moved to 72.3491 after 1439 ms (table move)
17-03-17 23:04:36.178 -07 000000482 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173564 mm (DAC = 37915)
17-03-17 23:04:36.188 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:36.188 -07 000000593 INF: FPGA: Recv ZSGSRD 36311
17-03-17 23:04:36.198 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 23:04:36.198 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:36.198 -07 000000415 INF: FPGA: Recv ZSGSRD 36309
17-03-17 23:04:36.208 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:36.208 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:36.208 -07 000000551 INF: FPGA: Recv ZSGSRD 36306
17-03-17 23:04:36.218 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:04:36.218 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:36.218 -07 000000593 INF: FPGA: Recv ZSGSRD 36307
17-03-17 23:04:36.228 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:36.228 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:36.228 -07 000000448 INF: FPGA: Recv ZSGSRD 36303
17-03-17 23:04:36.238 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:36.238 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:36.238 -07 000000502 INF: FPGA: Recv ZSGSRD 36312
17-03-17 23:04:36.248 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:36.248 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:36.248 -07 000000561 INF: FPGA: Recv ZSGSRD 36306
17-03-17 23:04:36.258 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:36.258 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:36.258 -07 000000475 INF: FPGA: Recv ZSGSRD 36313
17-03-17 23:04:36.268 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:36.268 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:36.268 -07 000000541 INF: FPGA: Recv ZSGSRD 36299
17-03-17 23:04:36.278 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:36.278 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:36.278 -07 000000547 INF: FPGA: Recv ZSGSRD 36310
17-03-17 23:04:36.288 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:36.288 -07 000000482 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:04:36.288 -07 000000429 INF: FPGA: Recv ZPIEZORD 32492
17-03-17 23:04:36.298 -07 000000482 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:36.298 -07 000000482 INF: Z Motor: Piezo is near 49.4 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.785 V. Piezo Error = -8.4 V.
17-03-17 23:04:36.298 -07 000000482 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.6 um, Read 10 ADC samples: Avg = 36308 (-172.7 uncal um), Error = 0.9 uncal um, Median = 36308 (-172.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36299 (-172.6 uncal um), Max = 36313 (-172.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 23:04:36.298 -07 000000482 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36308, posNoise = 5, negNoise = 9
17-03-17 23:04:36.298 -07 000000482 INF: Z Motor: After move to -0.173564, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:04:36.298 -07 000000482 INF: Z Motor: Settle wait time = 1442 ms, measure time = 120 ms (allowed 150 ms), total time = 1562 ms
17-03-17 23:04:36.298 -07 000000482 INF: Z Motor: Waiting extra 30 ms after reading position to reach expected total of 150 ms
17-03-17 23:04:36.328 -07 000000482 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1595 ms
17-03-17 23:04:36.328 -07 000000482 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:04:36.328 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:04:36.328 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:04:36.328 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:04:36.328 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:04:36.328 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:04:36.328 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:04:36.338 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:04:36.338 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:04:36.338 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:04:36.338 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:04:36.348 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 23:04:36.348 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 23:04:36.348 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:04:36.388 -07 000000409 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:04:36.588 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:04:36.588 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:04:36.588 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:04:36.598 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 23:04:36.628 -07 000000623 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:04:36.628 -07 000000475 INF: FPGA: Recv CAMSNAP
17-03-17 23:04:36.628 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 23:04:36.708 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 23:04:36.708 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:04:36.708 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:04:36.708 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 23:04:36.728 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:04:36.728 -07 000000415 INF: Autofocus start
17-03-17 23:04:36.728 -07 000000415 INF: MeasureProfile start
17-03-17 23:04:36.728 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:04:36.738 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:04:36.738 -07 000000448 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:04:36.738 -07 000000415 INF: MeasureProfile done
17-03-17 23:04:36.738 -07 000000415 INF: X=16  Z correction [um]=0.01042744
17-03-17 23:04:36.738 -07 000000415 INF: Autofocus finished
17-03-17 23:04:36.938 -07 000000541 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:04:36.938 -07 000000448 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:04:36.938 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34912109375, Z-position -0.173573646454192. ----------
17-03-17 23:04:36.938 -07 000000610 INF: Cycle	71	Tile	16	Exposure Settings		A	466	G	224	T	224	C	466
17-03-17 23:04:36.948 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36430, sync = True, waitForSettling = True)
17-03-17 23:04:36.948 -07 000000610 INF: Z Motor: Moving to -0.166766 mm, started at -0.173574 mm, distance = 6.81 um
17-03-17 23:04:36.948 -07 000000610 INF: FPGA: Xmit ZDACW 36430\n [Z Motor]
17-03-17 23:04:36.948 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 23:04:36.958 -07 000000610 INF: FPGA: 'ZDACW 36430' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:04:36.958 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:04:36.958 -07 000000429 INF: FPGA: Recv ZDACR 36430
17-03-17 23:04:36.968 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:36.968 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:04:37.028 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:04:37.028 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 70. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1132, R2=1178, Total=2310. Warn if over 250 bubbles per interval.
17-03-17 23:04:37.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:37.118 -07 000000551 INF: FPGA: Recv ZSGSRD 35249
17-03-17 23:04:37.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:37.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:37.128 -07 000000547 INF: FPGA: Recv ZSGSRD 35252
17-03-17 23:04:37.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:37.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:37.138 -07 000000482 INF: FPGA: Recv ZSGSRD 35257
17-03-17 23:04:37.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:37.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:37.148 -07 000000547 INF: FPGA: Recv ZSGSRD 35243
17-03-17 23:04:37.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:37.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:37.158 -07 000000627 INF: FPGA: Recv ZSGSRD 35244
17-03-17 23:04:37.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:37.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:37.168 -07 000000541 INF: FPGA: Recv ZSGSRD 35251
17-03-17 23:04:37.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:37.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:37.178 -07 000000475 INF: FPGA: Recv ZSGSRD 35249
17-03-17 23:04:37.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:37.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:37.188 -07 000000502 INF: FPGA: Recv ZSGSRD 35250
17-03-17 23:04:37.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:37.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:37.198 -07 000000462 INF: FPGA: Recv ZSGSRD 35250
17-03-17 23:04:37.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:37.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:37.208 -07 000000627 INF: FPGA: Recv ZSGSRD 35250
17-03-17 23:04:37.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:37.218 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:04:37.218 -07 000000409 INF: FPGA: Recv ZPIEZORD 31058
17-03-17 23:04:37.228 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:37.228 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.559 V. Piezo Error = -9.2 V.
17-03-17 23:04:37.228 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.8 um, Read 10 ADC samples: Avg = 35250 (-165.9 uncal um), Error = 0.9 uncal um, Median = 35250 (-165.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35243 (-165.9 uncal um), Max = 35257 (-166.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 23:04:37.228 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35250, posNoise = 7, negNoise = 7
17-03-17 23:04:37.228 -07 000000610 INF: Z Motor: After move to -0.166766, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:04:37.228 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 23:04:37.228 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:04:37.228 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:04:37.228 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:04:37.228 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:04:37.228 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:04:37.228 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:04:37.228 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:04:37.228 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:04:37.228 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 23:04:37.228 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:04:37.228 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:04:37.228 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:04:37.238 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:04:37.238 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:04:37.238 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:04:37.238 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:04:37.248 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 23:04:37.248 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 23:04:37.248 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 23:04:37.248 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 23:04:37.248 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 466 466 224 224 36607 150\n [Camera]
17-03-17 23:04:37.448 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:04:37.918 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 658
17-03-17 23:04:37.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 658
17-03-17 23:04:37.918 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:04:37.918 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:04:37.918 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 658
17-03-17 23:04:37.918 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 23:04:37.918 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 658
17-03-17 23:04:37.918 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:04:37.928 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:04:37.928 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 23:04:38.108 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36607 851
17-03-17 23:04:38.258 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1001
17-03-17 23:04:38.298 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 23:04:38.298 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 23:04:38.298 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:04:38.298 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 23:04:38.298 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 23:04:38.298 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:04:38.298 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:04:38.308 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:04:38.308 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 23:04:38.308 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 23:04:38.478 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1225
17-03-17 23:04:38.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1225
17-03-17 23:04:38.478 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:04:38.488 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1225
17-03-17 23:04:38.488 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1225
17-03-17 23:04:38.488 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:04:38.488 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:04:38.488 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-17 23:04:38.488 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:04:38.488 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-17 23:04:38.668 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP 1417
17-03-17 23:04:38.668 -07 000000409 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:04:38.668 -07 000000610 INF: FPGA: 'CAMDBLSNAP 466 466 224 224 36607 150' command took 2 ms to send, 1419 ms to get response, and 1424 ms overall
17-03-17 23:04:38.678 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:04:38.678 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.34912109375, Z-Position -0.166776830008209. ------
17-03-17 23:04:38.678 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:04:38.678 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17323 mm
17-03-17 23:04:38.678 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:04:38.678 -07 000000478 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 23:04:38.678 -07 000000478 INF: Y Motor: Moving to 73.1926 mm, started at 72.3491 mm, delta = 0.8435 mm
17-03-17 23:04:38.678 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:04:38.798 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 119 ms overall
17-03-17 23:04:38.798 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:04:38.798 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 37841, sync = True, waitForSettling = False)
17-03-17 23:04:38.798 -07 000000561 INF: Z Motor: Moving to -0.173225 mm, started at -0.166777 mm, distance = -6.45 um
17-03-17 23:04:38.798 -07 000000502 INF: FPGA: Recv YRDPOS 148171
17-03-17 23:04:38.808 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 123 ms overall
17-03-17 23:04:38.808 -07 000000478 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:04:38.808 -07 000000478 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:04:38.808 -07 000000478 INF: Y Motor: Moving 1350 steps-28
17-03-17 23:04:38.808 -07 000000623 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:04:38.818 -07 000000561 INF: FPGA: Xmit ZDACW 37841\n [Z Motor]
17-03-17 23:04:38.818 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 23:04:38.828 -07 000000478 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:04:38.828 -07 000000561 INF: FPGA: 'ZDACW 37841' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 23:04:38.838 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:04:38.838 -07 000000627 INF: FPGA: Recv ZDACR 37841
17-03-17 23:04:38.848 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:04:38.848 -07 000000561 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-17 23:04:38.888 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 23:04:38.888 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 23:04:38.888 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:04:38.888 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 23:04:38.888 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 23:04:38.888 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:04:38.898 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:04:38.898 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 23:04:38.898 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:04:38.898 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 23:04:39.008 -07 000000475 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:04:39.008 -07 000000623 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 197 ms to get response, and 213 ms overall
17-03-17 23:04:39.198 -07 000000448 INF: FPGA: Recv YMVTILE
17-03-17 23:04:39.198 -07 000000478 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 23:04:39.238 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:04:39.248 -07 000000486 INF: FPGA: Recv YRDPOS 149863
17-03-17 23:04:39.248 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 23:04:39.248 -07 000000478 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:04:39.248 -07 000000478 INF: Y Motor: Position error before settling (table move) = -35 encoder counts (-0.017 mm)
17-03-17 23:04:39.248 -07 000000478 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.843 mm, average velocity = 2.125 mm/sec
17-03-17 23:04:40.198 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:04:40.198 -07 000000501 INF: FPGA: Recv YRDPOS 149863
17-03-17 23:04:40.208 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:04:40.208 -07 000000478 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:04:40.228 -07 000000478 INF: Y Motor: After move to 73.192604, error = -0.017311, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:04:40.228 -07 000000478 INF: Y Motor: Position error after settling (table move) = -35 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:04:40.228 -07 000000478 INF: Y Motor: Moved to 73.1753 after 1549 ms (table move)
17-03-17 23:04:40.238 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173225 mm (DAC = 37841)
17-03-17 23:04:40.238 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:40.238 -07 000000547 INF: FPGA: Recv ZSGSRD 36252
17-03-17 23:04:40.248 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:40.248 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:40.248 -07 000000475 INF: FPGA: Recv ZSGSRD 36253
17-03-17 23:04:40.258 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:40.258 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:40.258 -07 000000502 INF: FPGA: Recv ZSGSRD 36260
17-03-17 23:04:40.268 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:40.268 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:40.268 -07 000000618 INF: FPGA: Recv ZSGSRD 36253
17-03-17 23:04:40.278 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:40.278 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:40.278 -07 000000448 INF: FPGA: Recv ZSGSRD 36264
17-03-17 23:04:40.288 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:40.288 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:40.288 -07 000000382 INF: FPGA: Recv ZSGSRD 36256
17-03-17 23:04:40.298 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:40.298 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:40.298 -07 000000486 INF: FPGA: Recv ZSGSRD 36254
17-03-17 23:04:40.308 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:40.308 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:40.308 -07 000000502 INF: FPGA: Recv ZSGSRD 36252
17-03-17 23:04:40.318 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:40.318 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:40.318 -07 000000561 INF: FPGA: Recv ZSGSRD 36264
17-03-17 23:04:40.328 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:40.328 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:40.328 -07 000000501 INF: FPGA: Recv ZSGSRD 36260
17-03-17 23:04:40.338 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:40.338 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:04:40.338 -07 000000409 INF: FPGA: Recv ZPIEZORD 32450
17-03-17 23:04:40.348 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:40.348 -07 000000576 INF: Z Motor: Piezo is near 49.3 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.774 V. Piezo Error = -8.4 V.
17-03-17 23:04:40.348 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.2 um, Read 10 ADC samples: Avg = 36257 (-172.4 uncal um), Error = 0.9 uncal um, Median = 36255 (-172.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36252 (-172.3 uncal um), Max = 36264 (-172.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:04:40.348 -07 000000576 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36257, posNoise = 7, negNoise = 5
17-03-17 23:04:40.348 -07 000000576 INF: Z Motor: After move to -0.173225, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:04:40.348 -07 000000576 INF: Z Motor: Settle wait time = 1435 ms, measure time = 110 ms (allowed 150 ms), total time = 1545 ms
17-03-17 23:04:40.348 -07 000000576 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 23:04:40.388 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1705 ms
17-03-17 23:04:40.388 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:04:40.388 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:04:40.388 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:04:40.388 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:04:40.388 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:04:40.388 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:04:40.388 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:04:40.388 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:04:40.388 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:04:40.398 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:04:40.398 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:04:40.398 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 23:04:40.398 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 23:04:40.408 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:04:40.448 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:04:40.648 -07 000000448 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:04:40.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:04:40.648 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:04:40.658 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 23:04:40.688 -07 000000429 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:04:40.688 -07 000000486 INF: FPGA: Recv CAMSNAP
17-03-17 23:04:40.688 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 288 ms overall
17-03-17 23:04:40.768 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 23:04:40.768 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:04:40.768 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:04:40.768 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-17 23:04:40.788 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:04:40.788 -07 000000448 INF: Autofocus start
17-03-17 23:04:40.788 -07 000000448 INF: MeasureProfile start
17-03-17 23:04:40.788 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:04:40.798 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:04:40.798 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:04:40.808 -07 000000448 INF: MeasureProfile done
17-03-17 23:04:40.808 -07 000000448 INF: X=48  Z correction [um]=0.1739867
17-03-17 23:04:40.808 -07 000000448 INF: Autofocus finished
17-03-17 23:04:40.998 -07 000000482 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:04:40.998 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:04:40.998 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17529296875, Z-position -0.173246011634962. ----------
17-03-17 23:04:40.998 -07 000000610 INF: Cycle	71	Tile	17	Exposure Settings		A	466	G	224	T	224	C	466
17-03-17 23:04:41.008 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36392, sync = True, waitForSettling = True)
17-03-17 23:04:41.008 -07 000000610 INF: Z Motor: Moving to -0.166592 mm, started at -0.173246 mm, distance = 6.65 um
17-03-17 23:04:41.008 -07 000000610 INF: FPGA: Xmit ZDACW 36392\n [Z Motor]
17-03-17 23:04:41.008 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 23:04:41.018 -07 000000610 INF: FPGA: 'ZDACW 36392' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:04:41.018 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:04:41.018 -07 000000462 INF: FPGA: Recv ZDACR 36392
17-03-17 23:04:41.028 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:41.028 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:04:41.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:41.178 -07 000000627 INF: FPGA: Recv ZSGSRD 35226
17-03-17 23:04:41.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:04:41.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:41.198 -07 000000551 INF: FPGA: Recv ZSGSRD 35223
17-03-17 23:04:41.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:04:41.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:41.208 -07 000000627 INF: FPGA: Recv ZSGSRD 35220
17-03-17 23:04:41.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:41.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:41.218 -07 000000547 INF: FPGA: Recv ZSGSRD 35225
17-03-17 23:04:41.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:41.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:41.238 -07 000000462 INF: FPGA: Recv ZSGSRD 35222
17-03-17 23:04:41.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 23:04:41.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:41.238 -07 000000475 INF: FPGA: Recv ZSGSRD 35223
17-03-17 23:04:41.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:04:41.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:41.248 -07 000000429 INF: FPGA: Recv ZSGSRD 35227
17-03-17 23:04:41.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:41.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:41.258 -07 000000561 INF: FPGA: Recv ZSGSRD 35225
17-03-17 23:04:41.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:41.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:41.268 -07 000000482 INF: FPGA: Recv ZSGSRD 35219
17-03-17 23:04:41.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:41.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:41.278 -07 000000623 INF: FPGA: Recv ZSGSRD 35219
17-03-17 23:04:41.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:41.288 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:04:41.288 -07 000000593 INF: FPGA: Recv ZPIEZORD 31072
17-03-17 23:04:41.298 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:41.298 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.553 V. Piezo Error = -9.2 V.
17-03-17 23:04:41.298 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.6 um, Read 10 ADC samples: Avg = 35223 (-165.7 uncal um), Error = 0.9 uncal um, Median = 35223 (-165.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35219 (-165.7 uncal um), Max = 35227 (-165.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:04:41.298 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35223, posNoise = 4, negNoise = 4
17-03-17 23:04:41.298 -07 000000610 INF: Z Motor: After move to -0.166592, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:04:41.298 -07 000000610 INF: Z Motor: MoveAbsStepped took 289 ms)
17-03-17 23:04:41.298 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:04:41.298 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:04:41.298 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:04:41.298 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:04:41.298 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:04:41.298 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:04:41.298 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:04:41.298 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:04:41.298 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:04:41.298 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:04:41.298 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:04:41.298 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:04:41.308 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:04:41.308 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:04:41.308 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:04:41.308 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:04:41.308 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 23:04:41.308 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 23:04:41.318 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 23:04:41.318 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:04:41.318 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 466 466 224 224 36569 150\n [Camera]
17-03-17 23:04:41.508 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 71, FrontChillerTemperature: 4.041198,
17-03-17 23:04:41.518 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:04:41.978 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 658
17-03-17 23:04:41.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 658
17-03-17 23:04:41.988 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 658
17-03-17 23:04:41.988 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:04:41.988 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 658
17-03-17 23:04:41.988 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:04:41.988 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:04:41.988 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 23:04:41.988 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:04:41.988 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 23:04:42.028 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:04:42.038 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 70. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1132, R2=1178, Total=2310. Warn if over 250 bubbles per interval.
17-03-17 23:04:42.178 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36569 851
17-03-17 23:04:42.328 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1001
17-03-17 23:04:42.368 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 23:04:42.368 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 23:04:42.368 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:04:42.368 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 23:04:42.368 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 23:04:42.368 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:04:42.378 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:04:42.378 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:04:42.378 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 23:04:42.378 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 23:04:42.548 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1225
17-03-17 23:04:42.548 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1225
17-03-17 23:04:42.548 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:04:42.548 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1225
17-03-17 23:04:42.548 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1225
17-03-17 23:04:42.558 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:04:42.558 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:04:42.558 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 23:04:42.558 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:04:42.558 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2602438304, 0x0, 391868352) start.
17-03-17 23:04:42.738 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1418
17-03-17 23:04:42.738 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:04:42.738 -07 000000610 INF: FPGA: 'CAMDBLSNAP 466 466 224 224 36569 150' command took 2 ms to send, 1417 ms to get response, and 1425 ms overall
17-03-17 23:04:42.748 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:04:42.748 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17529296875, Z-Position -0.166603376280381. ------
17-03-17 23:04:42.748 -07 000000415 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17300 mm
17-03-17 23:04:42.748 -07 000000415 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:04:42.748 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:04:42.748 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 23:04:42.748 -07 000000623 INF: Y Motor: Moving to 74.0226 mm, started at 73.1753 mm, delta = 0.8473 mm
17-03-17 23:04:42.748 -07 000000593 INF: Z Motor: Entering MoveAbsStepped (DAC = 37792, sync = True, waitForSettling = False)
17-03-17 23:04:42.748 -07 000000593 INF: Z Motor: Moving to -0.173001 mm, started at -0.166603 mm, distance = -6.40 um
17-03-17 23:04:42.748 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:04:42.758 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:04:42.758 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:04:42.758 -07 000000627 INF: FPGA: Recv YRDPOS 149864
17-03-17 23:04:42.768 -07 000000593 INF: FPGA: Xmit ZDACW 37792\n [Z Motor]
17-03-17 23:04:42.768 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 23:04:42.768 -07 000000623 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:04:42.768 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 23:04:42.768 -07 000000623 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:04:42.768 -07 000000623 INF: Y Motor: Moving 1355 steps-35
17-03-17 23:04:42.778 -07 000000475 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:04:42.778 -07 000000593 INF: FPGA: 'ZDACW 37792' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 23:04:42.788 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:04:42.798 -07 000000593 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:04:42.798 -07 000000482 INF: FPGA: Recv ZDACR 37792
17-03-17 23:04:42.808 -07 000000593 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:04:42.808 -07 000000593 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-17 23:04:42.958 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2602438304, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 23:04:42.958 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 23:04:42.958 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:04:42.958 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 23:04:42.958 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 23:04:42.958 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:04:42.958 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:04:42.958 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 23:04:42.958 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:04:42.968 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 23:04:42.978 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:04:42.978 -07 000000475 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 23:04:43.158 -07 000000547 INF: FPGA: Recv YMVTILE
17-03-17 23:04:43.158 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 23:04:43.198 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:04:43.198 -07 000000382 INF: FPGA: Recv YRDPOS 151567
17-03-17 23:04:43.208 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:04:43.208 -07 000000623 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:04:43.208 -07 000000623 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 23:04:43.208 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.847 mm, average velocity = 2.151 mm/sec
17-03-17 23:04:44.158 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:04:44.158 -07 000000502 INF: FPGA: Recv YRDPOS 151568
17-03-17 23:04:44.168 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:44.168 -07 000000623 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:04:44.188 -07 000000623 INF: Y Motor: After move to 74.022606, error = -0.014793, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:04:44.188 -07 000000623 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 23:04:44.188 -07 000000623 INF: Y Motor: Moved to 74.0078 after 1432 ms (table move)
17-03-17 23:04:44.188 -07 000000415 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173001 mm (DAC = 37792)
17-03-17 23:04:44.188 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:44.188 -07 000000541 INF: FPGA: Recv ZSGSRD 36225
17-03-17 23:04:44.198 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:04:44.198 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:44.198 -07 000000486 INF: FPGA: Recv ZSGSRD 36223
17-03-17 23:04:44.208 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:44.208 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:44.208 -07 000000627 INF: FPGA: Recv ZSGSRD 36222
17-03-17 23:04:44.218 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:44.218 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:44.218 -07 000000502 INF: FPGA: Recv ZSGSRD 36227
17-03-17 23:04:44.228 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:44.228 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:44.228 -07 000000576 INF: FPGA: Recv ZSGSRD 36218
17-03-17 23:04:44.238 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:44.238 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:44.238 -07 000000429 INF: FPGA: Recv ZSGSRD 36224
17-03-17 23:04:44.248 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:44.248 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:44.248 -07 000000547 INF: FPGA: Recv ZSGSRD 36218
17-03-17 23:04:44.258 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:44.258 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:44.258 -07 000000409 INF: FPGA: Recv ZSGSRD 36218
17-03-17 23:04:44.268 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:44.268 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:44.268 -07 000000541 INF: FPGA: Recv ZSGSRD 36218
17-03-17 23:04:44.278 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:44.278 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:44.278 -07 000000561 INF: FPGA: Recv ZSGSRD 36223
17-03-17 23:04:44.288 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:44.288 -07 000000415 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:04:44.288 -07 000000623 INF: FPGA: Recv ZPIEZORD 32387
17-03-17 23:04:44.298 -07 000000415 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:44.298 -07 000000415 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.767 V. Piezo Error = -8.5 V.
17-03-17 23:04:44.298 -07 000000415 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.0 um, Read 10 ADC samples: Avg = 36222 (-172.1 uncal um), Error = 0.9 uncal um, Median = 36222 (-172.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36218 (-172.1 uncal um), Max = 36227 (-172.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:04:44.298 -07 000000415 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36222, posNoise = 5, negNoise = 4
17-03-17 23:04:44.298 -07 000000415 INF: Z Motor: After move to -0.173001, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:04:44.298 -07 000000415 INF: Z Motor: Settle wait time = 1435 ms, measure time = 107 ms (allowed 150 ms), total time = 1542 ms
17-03-17 23:04:44.298 -07 000000415 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 23:04:44.348 -07 000000415 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1594 ms
17-03-17 23:04:44.348 -07 000000415 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:04:44.348 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:04:44.348 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:04:44.348 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:04:44.348 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:04:44.348 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:04:44.348 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:04:44.348 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:04:44.348 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:04:44.358 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:04:44.358 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:04:44.358 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 23:04:44.358 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 23:04:44.368 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:04:44.408 -07 000000482 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:04:44.608 -07 000000486 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:04:44.608 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:04:44.608 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:04:44.608 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2567016040, 0x0, 559484976) start.
17-03-17 23:04:44.648 -07 000000541 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:04:44.648 -07 000000478 INF: FPGA: Recv CAMSNAP
17-03-17 23:04:44.648 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 284 ms overall
17-03-17 23:04:44.728 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2567016040, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 23:04:44.728 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:04:44.728 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:04:44.728 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 23:04:44.748 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:04:44.748 -07 000000561 INF: Autofocus start
17-03-17 23:04:44.748 -07 000000561 INF: MeasureProfile start
17-03-17 23:04:44.748 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:04:44.758 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:04:44.758 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:04:44.758 -07 000000561 INF: MeasureProfile done
17-03-17 23:04:44.758 -07 000000561 INF: X=16  Z correction [um]=0.01042744
17-03-17 23:04:44.758 -07 000000561 INF: Autofocus finished
17-03-17 23:04:44.958 -07 000000627 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:04:44.958 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 202 ms overall
17-03-17 23:04:44.958 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0078125, Z-position -0.17302116421. ----------
17-03-17 23:04:44.958 -07 000000610 INF: Cycle	71	Tile	18	Exposure Settings		A	466	G	224	T	224	C	466
17-03-17 23:04:44.968 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36307, sync = True, waitForSettling = True)
17-03-17 23:04:44.968 -07 000000610 INF: Z Motor: Moving to -0.166203 mm, started at -0.173021 mm, distance = 6.82 um
17-03-17 23:04:44.968 -07 000000610 INF: FPGA: Xmit ZDACW 36307\n [Z Motor]
17-03-17 23:04:44.968 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 23:04:44.978 -07 000000610 INF: FPGA: 'ZDACW 36307' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:44.978 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:04:44.978 -07 000000627 INF: FPGA: Recv ZDACR 36307
17-03-17 23:04:44.988 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:44.988 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:04:45.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:45.138 -07 000000478 INF: FPGA: Recv ZSGSRD 35161
17-03-17 23:04:45.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:04:45.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:45.148 -07 000000482 INF: FPGA: Recv ZSGSRD 35166
17-03-17 23:04:45.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:45.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:45.158 -07 000000502 INF: FPGA: Recv ZSGSRD 35163
17-03-17 23:04:45.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:45.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:45.168 -07 000000541 INF: FPGA: Recv ZSGSRD 35162
17-03-17 23:04:45.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:45.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:45.178 -07 000000486 INF: FPGA: Recv ZSGSRD 35169
17-03-17 23:04:45.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:45.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:45.188 -07 000000462 INF: FPGA: Recv ZSGSRD 35163
17-03-17 23:04:45.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:45.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:45.198 -07 000000627 INF: FPGA: Recv ZSGSRD 35161
17-03-17 23:04:45.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:45.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:45.208 -07 000000593 INF: FPGA: Recv ZSGSRD 35159
17-03-17 23:04:45.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:45.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:45.218 -07 000000409 INF: FPGA: Recv ZSGSRD 35166
17-03-17 23:04:45.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:45.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:45.228 -07 000000561 INF: FPGA: Recv ZSGSRD 35171
17-03-17 23:04:45.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:45.238 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:04:45.238 -07 000000547 INF: FPGA: Recv ZPIEZORD 30987
17-03-17 23:04:45.248 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:45.258 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.540 V. Piezo Error = -9.2 V.
17-03-17 23:04:45.258 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.2 um, Read 10 ADC samples: Avg = 35164 (-165.4 uncal um), Error = 0.8 uncal um, Median = 35163 (-165.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35159 (-165.3 uncal um), Max = 35171 (-165.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:04:45.258 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35164, posNoise = 7, negNoise = 5
17-03-17 23:04:45.258 -07 000000610 INF: Z Motor: After move to -0.166203, error = -0.000022, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:04:45.258 -07 000000610 INF: Z Motor: MoveAbsStepped took 298 ms)
17-03-17 23:04:45.268 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:04:45.268 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:04:45.268 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:04:45.268 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:04:45.268 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:04:45.268 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:04:45.268 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:04:45.268 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:04:45.268 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:04:45.268 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:04:45.268 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 23:04:45.268 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:04:45.268 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 23:04:45.268 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:04:45.268 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 23:04:45.268 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:04:45.278 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 23:04:45.278 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 23:04:45.278 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 23:04:45.278 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 23:04:45.288 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 466 466 224 224 36484 150\n [Camera]
17-03-17 23:04:45.488 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:04:45.948 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 658
17-03-17 23:04:45.948 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 658
17-03-17 23:04:45.958 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:04:45.958 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:04:45.958 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 23:04:45.958 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 658
17-03-17 23:04:45.958 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 658
17-03-17 23:04:45.958 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:04:45.958 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:04:45.958 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-17 23:04:46.148 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36484 851
17-03-17 23:04:46.298 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1001
17-03-17 23:04:46.338 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 23:04:46.338 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 23:04:46.348 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:04:46.348 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 23:04:46.348 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 23:04:46.348 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:04:46.348 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:04:46.348 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 23:04:46.348 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:04:46.358 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 23:04:46.518 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1225
17-03-17 23:04:46.518 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1225
17-03-17 23:04:46.518 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:04:46.518 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:04:46.518 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-17 23:04:46.528 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1225
17-03-17 23:04:46.528 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1225
17-03-17 23:04:46.528 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:04:46.528 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:04:46.528 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 23:04:46.718 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1421
17-03-17 23:04:46.718 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:04:46.718 -07 000000610 INF: FPGA: 'CAMDBLSNAP 466 466 224 224 36484 150' command took 2 ms to send, 1421 ms to get response, and 1428 ms overall
17-03-17 23:04:46.828 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:04:46.828 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0078125, Z-Position -0.166224347764017. ------
17-03-17 23:04:46.828 -07 000000627 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17264 mm
17-03-17 23:04:46.828 -07 000000627 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:04:46.828 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:04:46.828 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 23:04:46.828 -07 000000618 INF: Y Motor: Moving to 74.8526 mm, started at 74.0078 mm, delta = 0.8448 mm
17-03-17 23:04:46.828 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 37712, sync = True, waitForSettling = False)
17-03-17 23:04:46.828 -07 000000502 INF: Z Motor: Moving to -0.172634 mm, started at -0.166224 mm, distance = -6.41 um
17-03-17 23:04:46.828 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:04:46.838 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:04:46.838 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:04:46.838 -07 000000593 INF: FPGA: Recv YRDPOS 151568
17-03-17 23:04:46.848 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 23:04:46.848 -07 000000618 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:04:46.848 -07 000000618 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:04:46.848 -07 000000618 INF: Y Motor: Moving 1352 steps-31
17-03-17 23:04:46.848 -07 000000475 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:04:46.858 -07 000000502 INF: FPGA: Xmit ZDACW 37712\n [Z Motor]
17-03-17 23:04:46.858 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 23:04:46.868 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:04:46.868 -07 000000502 INF: FPGA: 'ZDACW 37712' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 23:04:46.898 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:04:46.898 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 71, FrontChillerTemperature: 4.008536,
17-03-17 23:04:46.898 -07 000000547 INF: FPGA: Recv ZDACR 37712
17-03-17 23:04:46.908 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-17 23:04:46.908 -07 000000502 INF: Z Motor: MoveAbsStepped took 71 ms (did NOT wait for settling yet))
17-03-17 23:04:46.908 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 23:04:46.908 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 23:04:46.908 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:04:46.918 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 23:04:46.918 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 23:04:46.918 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:04:46.918 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:04:46.918 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 23:04:46.918 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 23:04:46.918 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 23:04:47.028 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:04:47.038 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 70. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1132, R2=1178, Total=2310. Warn if over 250 bubbles per interval.
17-03-17 23:04:47.048 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:04:47.048 -07 000000475 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 213 ms overall
17-03-17 23:04:47.238 -07 000000547 INF: FPGA: Recv YMVTILE
17-03-17 23:04:47.238 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 23:04:47.268 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:04:47.268 -07 000000623 INF: FPGA: Recv YRDPOS 153255
17-03-17 23:04:47.278 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:04:47.278 -07 000000618 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:04:47.278 -07 000000618 INF: Y Motor: Position error before settling (table move) = -43 encoder counts (-0.021 mm)
17-03-17 23:04:47.278 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.845 mm, average velocity = 2.123 mm/sec
17-03-17 23:04:48.228 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:04:48.228 -07 000000551 INF: FPGA: Recv YRDPOS 153255
17-03-17 23:04:48.238 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:04:48.238 -07 000000618 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:04:48.248 -07 000000618 INF: Y Motor: After move to 74.852608, error = -0.021065, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:04:48.248 -07 000000618 INF: Y Motor: Position error after settling (table move) = -43 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:04:48.248 -07 000000618 INF: Y Motor: Moved to 74.8315 after 1418 ms (table move)
17-03-17 23:04:48.258 -07 000000627 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172634 mm (DAC = 37712)
17-03-17 23:04:48.258 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:48.258 -07 000000623 INF: FPGA: Recv ZSGSRD 36172
17-03-17 23:04:48.268 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:04:48.268 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:48.268 -07 000000561 INF: FPGA: Recv ZSGSRD 36161
17-03-17 23:04:48.278 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:48.278 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:48.278 -07 000000618 INF: FPGA: Recv ZSGSRD 36155
17-03-17 23:04:48.288 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:48.288 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:48.288 -07 000000576 INF: FPGA: Recv ZSGSRD 36163
17-03-17 23:04:48.298 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:48.298 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:48.298 -07 000000475 INF: FPGA: Recv ZSGSRD 36159
17-03-17 23:04:48.308 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:48.308 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:48.308 -07 000000502 INF: FPGA: Recv ZSGSRD 36170
17-03-17 23:04:48.318 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:48.318 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:48.318 -07 000000593 INF: FPGA: Recv ZSGSRD 36169
17-03-17 23:04:48.328 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:48.328 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:48.328 -07 000000541 INF: FPGA: Recv ZSGSRD 36169
17-03-17 23:04:48.338 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:48.338 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:48.338 -07 000000576 INF: FPGA: Recv ZSGSRD 36161
17-03-17 23:04:48.348 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:48.348 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:48.348 -07 000000382 INF: FPGA: Recv ZSGSRD 36158
17-03-17 23:04:48.358 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:48.358 -07 000000627 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:04:48.358 -07 000000429 INF: FPGA: Recv ZPIEZORD 32343
17-03-17 23:04:48.368 -07 000000627 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:48.368 -07 000000627 INF: Z Motor: Piezo is near 49.1 V (nominally 0 to 100 V), expect near 57.5 V, since DAC is at 5.754 V. Piezo Error = -8.5 V.
17-03-17 23:04:48.368 -07 000000627 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.6 um, Read 10 ADC samples: Avg = 36164 (-171.8 uncal um), Error = 0.9 uncal um, Median = 36162 (-171.8 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36155 (-171.7 uncal um), Max = 36172 (-171.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 23:04:48.368 -07 000000627 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36164, posNoise = 8, negNoise = 9
17-03-17 23:04:48.368 -07 000000627 INF: Z Motor: After move to -0.172634, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:04:48.368 -07 000000627 INF: Z Motor: Settle wait time = 1422 ms, measure time = 109 ms (allowed 150 ms), total time = 1531 ms
17-03-17 23:04:48.368 -07 000000627 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 23:04:48.418 -07 000000627 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1584 ms
17-03-17 23:04:48.418 -07 000000627 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:04:48.418 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:04:48.418 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:04:48.418 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:04:48.418 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:04:48.418 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:04:48.418 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:04:48.418 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:04:48.418 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:04:48.428 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:04:48.428 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:04:48.428 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 23:04:48.428 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 23:04:48.438 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:04:48.478 -07 000000409 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:04:48.678 -07 000000547 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:04:48.678 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:04:48.678 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:04:48.678 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 23:04:48.718 -07 000000561 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:04:48.718 -07 000000551 INF: FPGA: Recv CAMSNAP
17-03-17 23:04:48.718 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 287 ms overall
17-03-17 23:04:48.798 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 23:04:48.798 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:04:48.798 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:04:48.798 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 23:04:48.818 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:04:48.818 -07 000000475 INF: Autofocus start
17-03-17 23:04:48.818 -07 000000475 INF: MeasureProfile start
17-03-17 23:04:48.818 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:04:48.828 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:04:48.828 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:04:48.828 -07 000000475 INF: MeasureProfile done
17-03-17 23:04:48.828 -07 000000475 INF: X=0  Z correction [um]=-0.0713522
17-03-17 23:04:48.828 -07 000000475 INF: Autofocus finished
17-03-17 23:04:49.028 -07 000000482 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:04:49.028 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:04:49.028 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83154296875, Z-position -0.172648559905778. ----------
17-03-17 23:04:49.028 -07 000000610 INF: Cycle	71	Tile	19	Exposure Settings		A	466	G	224	T	224	C	466
17-03-17 23:04:49.038 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36209, sync = True, waitForSettling = True)
17-03-17 23:04:49.038 -07 000000610 INF: Z Motor: Moving to -0.165754 mm, started at -0.172649 mm, distance = 6.89 um
17-03-17 23:04:49.038 -07 000000610 INF: FPGA: Xmit ZDACW 36209\n [Z Motor]
17-03-17 23:04:49.038 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 23:04:49.048 -07 000000610 INF: FPGA: 'ZDACW 36209' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:04:49.048 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:04:49.048 -07 000000561 INF: FPGA: Recv ZDACR 36209
17-03-17 23:04:49.058 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:49.058 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:04:49.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:49.208 -07 000000547 INF: FPGA: Recv ZSGSRD 35089
17-03-17 23:04:49.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:49.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:49.218 -07 000000415 INF: FPGA: Recv ZSGSRD 35094
17-03-17 23:04:49.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:49.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:49.228 -07 000000547 INF: FPGA: Recv ZSGSRD 35088
17-03-17 23:04:49.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:49.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:49.238 -07 000000382 INF: FPGA: Recv ZSGSRD 35093
17-03-17 23:04:49.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:49.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:49.258 -07 000000618 INF: FPGA: Recv ZSGSRD 35099
17-03-17 23:04:49.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 6 ms to send, 1 ms to get response, and 8 ms overall
17-03-17 23:04:49.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:49.258 -07 000000382 INF: FPGA: Recv ZSGSRD 35094
17-03-17 23:04:49.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:04:49.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:49.268 -07 000000618 INF: FPGA: Recv ZSGSRD 35090
17-03-17 23:04:49.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:49.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:49.278 -07 000000482 INF: FPGA: Recv ZSGSRD 35098
17-03-17 23:04:49.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:49.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:49.288 -07 000000448 INF: FPGA: Recv ZSGSRD 35085
17-03-17 23:04:49.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:49.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:49.298 -07 000000576 INF: FPGA: Recv ZSGSRD 35089
17-03-17 23:04:49.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:49.308 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:04:49.308 -07 000000382 INF: FPGA: Recv ZPIEZORD 30938
17-03-17 23:04:49.318 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:49.318 -07 000000610 INF: Z Motor: Piezo is near 46.1 V (nominally 0 to 100 V), expect near 55.3 V, since DAC is at 5.525 V. Piezo Error = -9.2 V.
17-03-17 23:04:49.318 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.8 um, Read 10 ADC samples: Avg = 35092 (-164.9 uncal um), Error = 0.9 uncal um, Median = 35092 (-164.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35085 (-164.9 uncal um), Max = 35099 (-164.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 23:04:49.318 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35092, posNoise = 7, negNoise = 7
17-03-17 23:04:49.318 -07 000000610 INF: Z Motor: After move to -0.165754, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:04:49.318 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 23:04:49.318 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:04:49.318 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:04:49.318 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:04:49.318 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:04:49.318 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:04:49.318 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:04:49.318 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:04:49.318 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:04:49.318 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:04:49.318 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:04:49.318 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:04:49.318 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:04:49.328 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 23:04:49.328 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:04:49.328 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:04:49.328 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:04:49.338 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 23:04:49.338 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 23:04:49.338 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 23:04:49.338 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:04:49.338 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 466 466 224 224 36386 150\n [Camera]
17-03-17 23:04:49.538 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:04:49.998 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 658
17-03-17 23:04:49.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 658
17-03-17 23:04:50.008 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:04:50.008 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 658
17-03-17 23:04:50.008 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 658
17-03-17 23:04:50.008 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:04:50.008 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:04:50.008 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 23:04:50.008 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:04:50.008 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 23:04:50.198 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36386 851
17-03-17 23:04:50.348 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1001
17-03-17 23:04:50.388 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 23:04:50.388 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 23:04:50.388 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:04:50.388 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 23:04:50.388 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 23:04:50.388 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:04:50.388 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:04:50.388 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:04:50.388 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 23:04:50.398 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 23:04:50.568 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1225
17-03-17 23:04:50.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1225
17-03-17 23:04:50.568 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:04:50.568 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1225
17-03-17 23:04:50.568 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1225
17-03-17 23:04:50.578 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:04:50.578 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:04:50.578 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-17 23:04:50.578 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:04:50.578 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-17 23:04:50.758 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1417
17-03-17 23:04:50.758 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:04:50.758 -07 000000610 INF: FPGA: 'CAMDBLSNAP 466 466 224 224 36386 150' command took 2 ms to send, 1418 ms to get response, and 1424 ms overall
17-03-17 23:04:50.978 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 23:04:50.978 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 23:04:50.978 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:04:50.978 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 23:04:50.978 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 23:04:50.978 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:04:50.988 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:04:50.988 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 415 ms.
17-03-17 23:04:50.988 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 23:04:50.988 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:04:50.998 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 420 ms.
17-03-17 23:04:51.028 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 23:04:51.028 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 23:04:51.068 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-17 23:04:51.078 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-17 23:04:51.078 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 23:04:51.188 -07 000000415 INF: FPGA: Recv EMCUR 
17-03-17 23:04:51.188 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 112 ms overall
17-03-17 23:04:51.188 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-17 23:04:51.688 -07 000000618 INF: FPGA: Recv EMIN
17-03-17 23:04:51.688 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 496 ms to get response, and 502 ms overall
17-03-17 23:04:51.688 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-17 23:04:51.688 -07 000000502 INF: FPGA: Recv EMCUR 
17-03-17 23:04:51.698 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:04:51.698 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:04:51.698 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83154296875, Z-Position -0.16576180448981. ------
17-03-17 23:04:51.698 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:04:51.698 -07 000000415 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.14019 mm
17-03-17 23:04:51.698 -07 000000415 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:04:51.698 -07 000000478 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 23:04:51.698 -07 000000478 INF: Y Motor: Moving to 59.9126 mm, started at 74.8315 mm, delta = -14.9189 mm
17-03-17 23:04:51.698 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 30625, sync = True, waitForSettling = False)
17-03-17 23:04:51.698 -07 000000486 INF: Z Motor: Moving to -0.140192 mm, started at -0.165762 mm, distance = 25.57 um
17-03-17 23:04:51.698 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:04:51.708 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:04:51.708 -07 000000448 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:04:51.718 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:04:51.718 -07 000000576 INF: FPGA: Recv YRDPOS 153257
17-03-17 23:04:51.728 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 23:04:51.728 -07 000000478 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:04:51.728 -07 000000486 INF: FPGA: Xmit ZDACW 30625\n [Z Motor]
17-03-17 23:04:51.728 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 23:04:51.728 -07 000000478 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-17 23:04:51.728 -07 000000478 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 23:04:51.738 -07 000000486 INF: FPGA: 'ZDACW 30625' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 23:04:51.738 -07 000000478 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 23:04:51.748 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:04:51.748 -07 000000429 INF: FPGA: Recv ZDACR 30625
17-03-17 23:04:51.758 -07 000000486 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:04:51.758 -07 000000486 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-17 23:04:51.908 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:04:51.908 -07 000000448 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:04:52.038 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:04:52.038 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 70. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1132, R2=1178, Total=2310. Warn if over 250 bubbles per interval.
17-03-17 23:04:52.268 -07 000000593 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 71, FrontChillerTemperature: 3.983999,
17-03-17 23:04:53.358 -07 000000482 INF: FPGA: Recv YMVTO 122703 23903
17-03-17 23:04:53.358 -07 000000478 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1618 ms to get response, and 1631 ms overall
17-03-17 23:04:53.358 -07 000000478 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 23:04:53.358 -07 000000478 INF: Y Motor: To move from 74.833 to 59.913 (-14.919 mm) should take 23872 steps, but required 23903 steps (14.939 mm). Slippage = 0.019 mm (0.00%).
17-03-17 23:04:53.358 -07 000000478 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1631 ms, distance = 14.919 mm, average velocity = 9.147 mm/sec
17-03-17 23:04:56.218 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:04:56.218 -07 000000482 INF: FPGA: Recv YRDPOS 122698
17-03-17 23:04:56.228 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:04:56.228 -07 000000478 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:04:56.258 -07 000000478 INF: Y Motor: After move to 59.912609, error = -0.001476, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:04:56.258 -07 000000478 INF: Y Motor: Position error after settling = -3 encoder counts (-0.001 mm), Delta during settling = -5 counts (-0.002 mm)
17-03-17 23:04:56.258 -07 000000478 INF: Y Motor: Moved to 59.9111 after 4552 ms
17-03-17 23:04:56.258 -07 000000415 INF: Z Motor: EndOfMoveAbsStepped: target = -0.140192 mm (DAC = 30625)
17-03-17 23:04:56.258 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:56.258 -07 000000486 INF: FPGA: Recv ZSGSRD 31118
17-03-17 23:04:56.268 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:04:56.268 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:56.268 -07 000000627 INF: FPGA: Recv ZSGSRD 31111
17-03-17 23:04:56.278 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:56.278 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:56.278 -07 000000409 INF: FPGA: Recv ZSGSRD 31108
17-03-17 23:04:56.288 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:56.288 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:56.288 -07 000000482 INF: FPGA: Recv ZSGSRD 31112
17-03-17 23:04:56.298 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:56.298 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:56.298 -07 000000429 INF: FPGA: Recv ZSGSRD 31114
17-03-17 23:04:56.308 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:56.308 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:56.308 -07 000000623 INF: FPGA: Recv ZSGSRD 31113
17-03-17 23:04:56.318 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:04:56.318 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:56.318 -07 000000448 INF: FPGA: Recv ZSGSRD 31115
17-03-17 23:04:56.328 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:56.328 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:56.328 -07 000000627 INF: FPGA: Recv ZSGSRD 31117
17-03-17 23:04:56.338 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:56.338 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:56.338 -07 000000486 INF: FPGA: Recv ZSGSRD 31114
17-03-17 23:04:56.348 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:56.348 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:56.348 -07 000000541 INF: FPGA: Recv ZSGSRD 31109
17-03-17 23:04:56.358 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:56.358 -07 000000415 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:04:56.358 -07 000000475 INF: FPGA: Recv ZPIEZORD 26759
17-03-17 23:04:56.368 -07 000000415 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:56.368 -07 000000415 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 46.7 V, since DAC is at 4.673 V. Piezo Error = -9.6 V.
17-03-17 23:04:56.368 -07 000000415 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.2 um, Read 10 ADC samples: Avg = 31113 (-139.4 uncal um), Error = 0.8 uncal um, Median = 31114 (-139.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 31108 (-139.4 uncal um), Max = 31118 (-139.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:04:56.368 -07 000000415 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31113, posNoise = 5, negNoise = 5
17-03-17 23:04:56.368 -07 000000415 INF: Z Motor: After move to -0.140192, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:04:56.368 -07 000000415 INF: Z Motor: Settle wait time = 4555 ms, measure time = 105 ms (allowed 150 ms), total time = 4660 ms
17-03-17 23:04:56.368 -07 000000415 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 23:04:56.418 -07 000000415 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4713 ms
17-03-17 23:04:56.418 -07 000000415 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:04:56.418 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:04:56.418 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:04:56.418 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:04:56.418 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:04:56.418 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:04:56.418 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:04:56.418 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 23:04:56.418 -07 000000448 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 23:04:56.448 -07 000000448 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-17 23:04:56.448 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:04:56.448 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 23:04:56.448 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:04:56.458 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 23:04:56.458 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 43 ms.
17-03-17 23:04:56.468 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:04:56.508 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:04:56.708 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:04:56.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:04:56.708 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:04:56.708 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 23:04:56.748 -07 000000482 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:04:56.748 -07 000000448 INF: FPGA: Recv CAMSNAP
17-03-17 23:04:56.748 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 285 ms overall
17-03-17 23:04:56.828 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 23:04:56.828 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:04:56.828 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:04:56.828 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 23:04:56.848 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:04:56.848 -07 000000551 INF: Image SNR check: start
17-03-17 23:04:56.848 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:04:56.858 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:04:56.858 -07 000000429 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:04:56.868 -07 000000551 INF: Image SNR check: pass  [peak (Max-Min)=53.84]
17-03-17 23:04:56.868 -07 000000551 INF: Autofocus start
17-03-17 23:04:56.868 -07 000000551 INF: MeasureProfile start
17-03-17 23:04:56.878 -07 000000551 INF: MeasureProfile done
17-03-17 23:04:56.878 -07 000000551 INF: X=0  Z correction [um]=-0.02394831
17-03-17 23:04:56.878 -07 000000551 INF: Autofocus finished
17-03-17 23:04:57.038 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:04:57.038 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 70. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1132, R2=1178, Total=2310. Warn if over 250 bubbles per interval.
17-03-17 23:04:57.058 -07 000000593 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:04:57.058 -07 000000429 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:04:57.058 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.9111328125, Z-position -0.140199864377744. ----------
17-03-17 23:04:57.058 -07 000000610 INF: Cycle	71	Tile	1	Exposure Settings		A	466	G	224	T	224	C	466
17-03-17 23:04:57.068 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29132, sync = True, waitForSettling = True)
17-03-17 23:04:57.068 -07 000000610 INF: Z Motor: Moving to -0.133358 mm, started at -0.140200 mm, distance = 6.84 um
17-03-17 23:04:57.068 -07 000000610 INF: FPGA: Xmit ZDACW 29132\n [Z Motor]
17-03-17 23:04:57.068 -07 000000409 INF: FPGA: Recv ZDACW
17-03-17 23:04:57.078 -07 000000610 INF: FPGA: 'ZDACW 29132' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:04:57.078 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:04:57.078 -07 000000627 INF: FPGA: Recv ZDACR 29132
17-03-17 23:04:57.088 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:57.088 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:04:57.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:57.238 -07 000000501 INF: FPGA: Recv ZSGSRD 30050
17-03-17 23:04:57.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:04:57.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:57.248 -07 000000623 INF: FPGA: Recv ZSGSRD 30044
17-03-17 23:04:57.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:57.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:57.258 -07 000000501 INF: FPGA: Recv ZSGSRD 30051
17-03-17 23:04:57.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:57.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:57.268 -07 000000462 INF: FPGA: Recv ZSGSRD 30042
17-03-17 23:04:57.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:57.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:57.278 -07 000000561 INF: FPGA: Recv ZSGSRD 30048
17-03-17 23:04:57.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:57.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:57.288 -07 000000623 INF: FPGA: Recv ZSGSRD 30050
17-03-17 23:04:57.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:57.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:57.298 -07 000000482 INF: FPGA: Recv ZSGSRD 30047
17-03-17 23:04:57.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:57.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:57.318 -07 000000623 INF: FPGA: Recv ZSGSRD 30047
17-03-17 23:04:57.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:04:57.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:57.328 -07 000000618 INF: FPGA: Recv ZSGSRD 30048
17-03-17 23:04:57.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:57.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:04:57.338 -07 000000382 INF: FPGA: Recv ZSGSRD 30051
17-03-17 23:04:57.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:57.348 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:04:57.348 -07 000000551 INF: FPGA: Recv ZPIEZORD 25604
17-03-17 23:04:57.358 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:04:57.358 -07 000000610 INF: Z Motor: Piezo is near 34.7 V (nominally 0 to 100 V), expect near 44.5 V, since DAC is at 4.445 V. Piezo Error = -9.8 V.
17-03-17 23:04:57.358 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.4 um, Read 10 ADC samples: Avg = 30048 (-132.6 uncal um), Error = 0.8 uncal um, Median = 30048 (-132.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30042 (-132.5 uncal um), Max = 30051 (-132.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:04:57.358 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30048, posNoise = 3, negNoise = 6
17-03-17 23:04:57.358 -07 000000610 INF: Z Motor: After move to -0.133358, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:04:57.358 -07 000000610 INF: Z Motor: MoveAbsStepped took 290 ms)
17-03-17 23:04:57.358 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:04:57.358 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:04:57.358 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:04:57.358 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:04:57.358 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:04:57.358 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:04:57.358 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:04:57.358 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:04:57.358 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:04:57.358 -07 000000627 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 23:04:57.358 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:04:57.358 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:04:57.368 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 23:04:57.368 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:04:57.378 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 23:04:57.378 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 23:04:57.378 -07 000000627 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 20 ms.
17-03-17 23:04:57.378 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:04:57.388 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 23:04:57.388 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:04:57.398 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 23:04:57.398 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 32 ms.
17-03-17 23:04:57.398 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 466 466 224 224 29309 150\n [Camera]
17-03-17 23:04:57.598 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:04:57.628 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 71, FrontChillerTemperature: 3.971733,
17-03-17 23:04:58.058 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 658
17-03-17 23:04:58.058 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 658
17-03-17 23:04:58.058 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:04:58.068 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 658
17-03-17 23:04:58.068 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 658
17-03-17 23:04:58.068 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:04:58.068 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 23:04:58.068 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:04:58.078 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:04:58.078 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 23:04:58.258 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29309 851
17-03-17 23:04:58.408 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1001
17-03-17 23:04:58.448 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 23:04:58.448 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 23:04:58.448 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:04:58.448 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 23:04:58.448 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:04:58.448 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 23:04:58.448 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 23:04:58.448 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:04:58.448 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:04:58.458 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 23:04:58.628 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1225
17-03-17 23:04:58.628 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1225
17-03-17 23:04:58.628 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:04:58.628 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1225
17-03-17 23:04:58.628 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1225
17-03-17 23:04:58.628 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:04:58.738 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:04:58.738 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-17 23:04:58.738 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:04:58.738 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-17 23:04:58.818 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1418
17-03-17 23:04:58.818 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:04:58.818 -07 000000610 INF: FPGA: 'CAMDBLSNAP 466 466 224 224 29309 150' command took 2 ms to send, 1417 ms to get response, and 1425 ms overall
17-03-17 23:04:58.818 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:04:58.818 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.9111328125, Z-Position -0.133358078446768. ------
17-03-17 23:04:58.828 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:04:58.828 -07 000000429 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13952 mm
17-03-17 23:04:58.828 -07 000000429 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:04:58.828 -07 000000627 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 23:04:58.828 -07 000000627 INF: Y Motor: Moving to 60.7426 mm, started at 59.9111 mm, delta = 0.8315 mm
17-03-17 23:04:58.828 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 30479, sync = True, waitForSettling = False)
17-03-17 23:04:58.828 -07 000000576 INF: Z Motor: Moving to -0.139524 mm, started at -0.133358 mm, distance = -6.17 um
17-03-17 23:04:58.828 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:04:58.838 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:04:58.838 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:04:58.838 -07 000000561 INF: FPGA: Recv YRDPOS 122698
17-03-17 23:04:58.848 -07 000000576 INF: FPGA: Xmit ZDACW 30479\n [Z Motor]
17-03-17 23:04:58.848 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 23:04:58.848 -07 000000627 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:04:58.848 -07 000000627 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:04:58.848 -07 000000627 INF: Y Motor: Moving 1330 steps2
17-03-17 23:04:58.848 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 23:04:58.858 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:04:58.858 -07 000000576 INF: FPGA: 'ZDACW 30479' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 23:04:58.868 -07 000000627 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:04:58.878 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:04:58.878 -07 000000475 INF: FPGA: Recv ZDACR 30479
17-03-17 23:04:58.888 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 23:04:58.888 -07 000000576 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 23:04:59.058 -07 000000551 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:04:59.058 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 23:04:59.138 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 23:04:59.138 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 23:04:59.138 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:04:59.138 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 23:04:59.138 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 23:04:59.138 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:04:59.138 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:04:59.138 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:04:59.138 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 512 ms.
17-03-17 23:04:59.148 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 513 ms.
17-03-17 23:04:59.238 -07 000000593 INF: FPGA: Recv YMVTILE
17-03-17 23:04:59.238 -07 000000627 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 23:04:59.278 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:04:59.278 -07 000000478 INF: FPGA: Recv YRDPOS 124381
17-03-17 23:04:59.288 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:04:59.288 -07 000000627 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:04:59.288 -07 000000627 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 23:04:59.288 -07 000000627 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.831 mm, average velocity = 2.094 mm/sec
17-03-17 23:05:00.238 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:05:00.238 -07 000000623 INF: FPGA: Recv YRDPOS 124381
17-03-17 23:05:00.248 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:05:00.248 -07 000000627 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:05:00.268 -07 000000627 INF: Y Motor: After move to 60.742607, error = -0.009697, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:05:00.268 -07 000000627 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:05:00.268 -07 000000627 INF: Y Motor: Moved to 60.7329 after 1440 ms (table move)
17-03-17 23:05:00.278 -07 000000429 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139524 mm (DAC = 30479)
17-03-17 23:05:00.278 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:00.278 -07 000000475 INF: FPGA: Recv ZSGSRD 31006
17-03-17 23:05:00.288 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:00.288 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:00.288 -07 000000551 INF: FPGA: Recv ZSGSRD 31007
17-03-17 23:05:00.298 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:00.298 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:00.298 -07 000000547 INF: FPGA: Recv ZSGSRD 31009
17-03-17 23:05:00.308 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:00.308 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:00.308 -07 000000576 INF: FPGA: Recv ZSGSRD 31012
17-03-17 23:05:00.318 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:00.318 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:00.318 -07 000000502 INF: FPGA: Recv ZSGSRD 31014
17-03-17 23:05:00.328 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:00.328 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:00.328 -07 000000482 INF: FPGA: Recv ZSGSRD 31009
17-03-17 23:05:00.338 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:00.338 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:00.338 -07 000000448 INF: FPGA: Recv ZSGSRD 31007
17-03-17 23:05:00.348 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:00.348 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:00.348 -07 000000415 INF: FPGA: Recv ZSGSRD 31001
17-03-17 23:05:00.358 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:00.358 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:00.358 -07 000000478 INF: FPGA: Recv ZSGSRD 31004
17-03-17 23:05:00.368 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:00.368 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:00.368 -07 000000501 INF: FPGA: Recv ZSGSRD 31012
17-03-17 23:05:00.378 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:00.378 -07 000000429 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:05:00.378 -07 000000409 INF: FPGA: Recv ZPIEZORD 26885
17-03-17 23:05:00.388 -07 000000429 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:00.388 -07 000000429 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.5 V, since DAC is at 4.651 V. Piezo Error = -9.1 V.
17-03-17 23:05:00.388 -07 000000429 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.5 um, Read 10 ADC samples: Avg = 31008 (-138.7 uncal um), Error = 0.8 uncal um, Median = 31008 (-138.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 31001 (-138.7 uncal um), Max = 31014 (-138.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 23:05:00.388 -07 000000429 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31008, posNoise = 6, negNoise = 7
17-03-17 23:05:00.388 -07 000000429 INF: Z Motor: After move to -0.139524, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:05:00.388 -07 000000429 INF: Z Motor: Settle wait time = 1443 ms, measure time = 111 ms (allowed 150 ms), total time = 1554 ms
17-03-17 23:05:00.388 -07 000000429 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 23:05:00.428 -07 000000429 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms
17-03-17 23:05:00.428 -07 000000429 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:05:00.428 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:05:00.428 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:05:00.428 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:05:00.428 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:05:00.428 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:05:00.428 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:05:00.428 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:05:00.428 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:05:00.438 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:05:00.438 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:05:00.448 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 23:05:00.448 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 23:05:00.448 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:05:00.498 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:05:00.698 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:05:00.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:05:00.698 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:05:00.698 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 606469960, 0x0, 559484976) start.
17-03-17 23:05:00.738 -07 000000502 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:05:00.738 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-17 23:05:00.738 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 23:05:00.828 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 606469960, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 23:05:00.828 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:05:00.828 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:05:00.828 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 23:05:00.838 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:05:00.838 -07 000000382 INF: Autofocus start
17-03-17 23:05:00.838 -07 000000382 INF: MeasureProfile start
17-03-17 23:05:00.838 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:05:00.848 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:05:00.848 -07 000000541 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:05:00.848 -07 000000382 INF: MeasureProfile done
17-03-17 23:05:00.848 -07 000000382 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 23:05:00.848 -07 000000382 INF: Autofocus finished
17-03-17 23:05:01.048 -07 000000547 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:05:01.048 -07 000000541 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:05:01.048 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73291015625, Z-position -0.139525322102859. ----------
17-03-17 23:05:01.048 -07 000000610 INF: Cycle	71	Tile	2	Exposure Settings		A	466	G	224	T	224	C	466
17-03-17 23:05:01.058 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28974, sync = True, waitForSettling = True)
17-03-17 23:05:01.058 -07 000000610 INF: Z Motor: Moving to -0.132634 mm, started at -0.139525 mm, distance = 6.89 um
17-03-17 23:05:01.058 -07 000000610 INF: FPGA: Xmit ZDACW 28974\n [Z Motor]
17-03-17 23:05:01.058 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 23:05:01.068 -07 000000610 INF: FPGA: 'ZDACW 28974' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:05:01.068 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:05:01.068 -07 000000502 INF: FPGA: Recv ZDACR 28974
17-03-17 23:05:01.078 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:01.078 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:05:01.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:01.228 -07 000000382 INF: FPGA: Recv ZSGSRD 29941
17-03-17 23:05:01.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:01.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:01.238 -07 000000623 INF: FPGA: Recv ZSGSRD 29940
17-03-17 23:05:01.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:01.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:01.248 -07 000000486 INF: FPGA: Recv ZSGSRD 29938
17-03-17 23:05:01.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:01.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:01.258 -07 000000576 INF: FPGA: Recv ZSGSRD 29934
17-03-17 23:05:01.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:01.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:01.268 -07 000000561 INF: FPGA: Recv ZSGSRD 29938
17-03-17 23:05:01.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:01.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:01.278 -07 000000415 INF: FPGA: Recv ZSGSRD 29936
17-03-17 23:05:01.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:01.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:01.288 -07 000000623 INF: FPGA: Recv ZSGSRD 29933
17-03-17 23:05:01.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:01.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:01.298 -07 000000618 INF: FPGA: Recv ZSGSRD 29941
17-03-17 23:05:01.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:01.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:01.308 -07 000000501 INF: FPGA: Recv ZSGSRD 29937
17-03-17 23:05:01.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:01.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:01.318 -07 000000561 INF: FPGA: Recv ZSGSRD 29940
17-03-17 23:05:01.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:01.328 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:05:01.328 -07 000000475 INF: FPGA: Recv ZPIEZORD 25513
17-03-17 23:05:01.338 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:01.338 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.421 V. Piezo Error = -9.7 V.
17-03-17 23:05:01.338 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.6 um, Read 10 ADC samples: Avg = 29938 (-131.9 uncal um), Error = 0.8 uncal um, Median = 29938 (-131.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29933 (-131.8 uncal um), Max = 29941 (-131.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:05:01.338 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29938, posNoise = 3, negNoise = 5
17-03-17 23:05:01.338 -07 000000610 INF: Z Motor: After move to -0.132634, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:05:01.338 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 23:05:01.338 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:05:01.338 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:05:01.338 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:05:01.338 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:05:01.338 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:05:01.338 -07 000000409 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:05:01.338 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:05:01.338 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:05:01.338 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:05:01.338 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:05:01.338 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 23:05:01.338 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:05:01.348 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:05:01.348 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:05:01.348 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 23:05:01.348 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:05:01.358 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 23:05:01.358 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 23:05:01.358 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 23:05:01.358 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 23:05:01.358 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 466 466 224 224 29151 150\n [Camera]
17-03-17 23:05:01.558 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:05:02.028 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 659
17-03-17 23:05:02.028 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 659
17-03-17 23:05:02.028 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:05:02.028 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 659
17-03-17 23:05:02.028 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 659
17-03-17 23:05:02.028 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:05:02.038 -07 000000409 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:05:02.038 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:05:02.038 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 23:05:02.038 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 70. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1132, R2=1178, Total=2310. Warn if over 250 bubbles per interval.
17-03-17 23:05:02.038 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:05:02.038 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 23:05:02.218 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29151 851
17-03-17 23:05:02.368 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1001
17-03-17 23:05:02.428 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 23:05:02.428 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 23:05:02.428 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:05:02.438 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 23:05:02.438 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 23:05:02.438 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:05:02.438 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:05:02.438 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 23:05:02.438 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:05:02.448 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 23:05:02.598 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1225
17-03-17 23:05:02.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1225
17-03-17 23:05:02.598 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:05:02.598 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1225
17-03-17 23:05:02.598 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1225
17-03-17 23:05:02.598 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:05:02.598 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:05:02.598 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 23:05:02.598 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:05:02.598 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2602438304, 0x0, 391868352) start.
17-03-17 23:05:02.788 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP 1417
17-03-17 23:05:02.788 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:05:02.788 -07 000000610 INF: FPGA: 'CAMDBLSNAP 466 466 224 224 29151 150' command took 2 ms to send, 1412 ms to get response, and 1425 ms overall
17-03-17 23:05:02.788 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:05:02.788 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73291015625, Z-Position -0.132651415111175. ------
17-03-17 23:05:02.788 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:05:02.788 -07 000000541 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13932 mm
17-03-17 23:05:02.798 -07 000000541 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:05:02.798 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:05:02.798 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 23:05:02.798 -07 000000561 INF: Y Motor: Moving to 61.5726 mm, started at 60.7329 mm, delta = 0.8397 mm
17-03-17 23:05:02.798 -07 000000409 INF: Z Motor: Entering MoveAbsStepped (DAC = 30434, sync = True, waitForSettling = False)
17-03-17 23:05:02.798 -07 000000409 INF: Z Motor: Moving to -0.139318 mm, started at -0.132651 mm, distance = -6.67 um
17-03-17 23:05:02.808 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:05:02.808 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:05:02.808 -07 000000482 INF: FPGA: Recv YRDPOS 124382
17-03-17 23:05:02.818 -07 000000409 INF: FPGA: Xmit ZDACW 30434\n [Z Motor]
17-03-17 23:05:02.818 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 23:05:02.818 -07 000000561 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:05:02.818 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 23:05:02.818 -07 000000561 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:05:02.818 -07 000000561 INF: Y Motor: Moving 1343 steps-20
17-03-17 23:05:02.828 -07 000000409 INF: FPGA: 'ZDACW 30434' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 23:05:02.828 -07 000000429 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:05:02.838 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:05:02.848 -07 000000409 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:05:02.848 -07 000000627 INF: FPGA: Recv ZDACR 30434
17-03-17 23:05:02.858 -07 000000409 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:05:02.858 -07 000000409 INF: Z Motor: MoveAbsStepped took 56 ms (did NOT wait for settling yet))
17-03-17 23:05:02.998 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2602438304, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 23:05:02.998 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 23:05:02.998 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:05:02.998 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 23:05:02.998 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 23:05:02.998 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:05:02.998 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:05:02.998 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 23:05:02.998 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:05:03.008 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 71, FrontChillerTemperature: 3.996267,
17-03-17 23:05:03.008 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 23:05:03.028 -07 000000486 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:05:03.028 -07 000000429 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 23:05:03.208 -07 000000482 INF: FPGA: Recv YMVTILE
17-03-17 23:05:03.208 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-17 23:05:03.248 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:05:03.258 -07 000000462 INF: FPGA: Recv YRDPOS 126083
17-03-17 23:05:03.258 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 23:05:03.258 -07 000000561 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:05:03.258 -07 000000561 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 23:05:03.258 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.840 mm, average velocity = 2.137 mm/sec
17-03-17 23:05:04.208 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:05:04.208 -07 000000409 INF: FPGA: Recv YRDPOS 126083
17-03-17 23:05:04.218 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:05:04.218 -07 000000561 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:05:04.238 -07 000000561 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:05:04.238 -07 000000561 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:05:04.238 -07 000000561 INF: Y Motor: Moved to 61.5640 after 1443 ms (table move)
17-03-17 23:05:04.238 -07 000000541 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139318 mm (DAC = 30434)
17-03-17 23:05:04.238 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:04.248 -07 000000448 INF: FPGA: Recv ZSGSRD 30977
17-03-17 23:05:04.248 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 23:05:04.248 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:04.248 -07 000000618 INF: FPGA: Recv ZSGSRD 30981
17-03-17 23:05:04.258 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:05:04.258 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:04.258 -07 000000486 INF: FPGA: Recv ZSGSRD 30974
17-03-17 23:05:04.268 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:04.268 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:04.268 -07 000000415 INF: FPGA: Recv ZSGSRD 30982
17-03-17 23:05:04.278 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:04.278 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:04.278 -07 000000501 INF: FPGA: Recv ZSGSRD 30982
17-03-17 23:05:04.288 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:04.288 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:04.288 -07 000000478 INF: FPGA: Recv ZSGSRD 30979
17-03-17 23:05:04.298 -07 000000541 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:04.298 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:04.298 -07 000000415 INF: FPGA: Recv ZSGSRD 30981
17-03-17 23:05:04.308 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:04.308 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:04.308 -07 000000547 INF: FPGA: Recv ZSGSRD 30971
17-03-17 23:05:04.318 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:04.318 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:04.318 -07 000000448 INF: FPGA: Recv ZSGSRD 30979
17-03-17 23:05:04.328 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:04.328 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:04.328 -07 000000462 INF: FPGA: Recv ZSGSRD 30973
17-03-17 23:05:04.338 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:04.338 -07 000000541 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:05:04.338 -07 000000475 INF: FPGA: Recv ZPIEZORD 26886
17-03-17 23:05:04.348 -07 000000541 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:04.348 -07 000000541 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.644 V. Piezo Error = -9.0 V.
17-03-17 23:05:04.348 -07 000000541 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.3 um, Read 10 ADC samples: Avg = 30978 (-138.5 uncal um), Error = 0.8 uncal um, Median = 30979 (-138.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30971 (-138.5 uncal um), Max = 30982 (-138.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 23:05:04.348 -07 000000541 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30978, posNoise = 4, negNoise = 7
17-03-17 23:05:04.348 -07 000000541 INF: Z Motor: After move to -0.139318, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:05:04.348 -07 000000541 INF: Z Motor: Settle wait time = 1445 ms, measure time = 101 ms (allowed 150 ms), total time = 1546 ms
17-03-17 23:05:04.348 -07 000000541 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 23:05:04.398 -07 000000541 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-17 23:05:04.398 -07 000000541 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:05:04.398 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:05:04.398 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:05:04.398 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:05:04.398 -07 000000409 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:05:04.398 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:05:04.398 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:05:04.398 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:05:04.398 -07 000000409 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:05:04.398 -07 000000409 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:05:04.398 -07 000000409 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:05:04.408 -07 000000409 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 23:05:04.408 -07 000000409 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 23:05:04.408 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:05:04.458 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:05:04.658 -07 000000593 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:05:04.658 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:05:04.658 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:05:04.658 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 23:05:04.698 -07 000000561 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:05:04.698 -07 000000448 INF: FPGA: Recv CAMSNAP
17-03-17 23:05:04.698 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 286 ms overall
17-03-17 23:05:04.778 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 23:05:04.778 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:05:04.778 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:05:04.778 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 23:05:04.798 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:05:04.798 -07 000000576 INF: Autofocus start
17-03-17 23:05:04.798 -07 000000576 INF: MeasureProfile start
17-03-17 23:05:04.798 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:05:04.808 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:05:04.808 -07 000000478 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:05:04.808 -07 000000576 INF: MeasureProfile done
17-03-17 23:05:04.808 -07 000000576 INF: X=16  Z correction [um]=0.0530179
17-03-17 23:05:04.808 -07 000000576 INF: Autofocus finished
17-03-17 23:05:05.008 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:05:05.008 -07 000000478 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:05:05.008 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.139332595738606. ----------
17-03-17 23:05:05.008 -07 000000610 INF: Cycle	71	Tile	3	Exposure Settings		A	466	G	224	T	224	C	466
17-03-17 23:05:05.018 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28959, sync = True, waitForSettling = True)
17-03-17 23:05:05.018 -07 000000610 INF: Z Motor: Moving to -0.132566 mm, started at -0.139333 mm, distance = 6.77 um
17-03-17 23:05:05.018 -07 000000610 INF: FPGA: Xmit ZDACW 28959\n [Z Motor]
17-03-17 23:05:05.018 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 23:05:05.028 -07 000000610 INF: FPGA: 'ZDACW 28959' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:05:05.028 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:05:05.028 -07 000000486 INF: FPGA: Recv ZDACR 28959
17-03-17 23:05:05.038 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:05.038 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:05:05.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:05.188 -07 000000429 INF: FPGA: Recv ZSGSRD 29931
17-03-17 23:05:05.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:05:05.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:05.198 -07 000000448 INF: FPGA: Recv ZSGSRD 29930
17-03-17 23:05:05.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:05.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:05.208 -07 000000415 INF: FPGA: Recv ZSGSRD 29925
17-03-17 23:05:05.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:05.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:05.218 -07 000000541 INF: FPGA: Recv ZSGSRD 29932
17-03-17 23:05:05.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:05.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:05.228 -07 000000415 INF: FPGA: Recv ZSGSRD 29930
17-03-17 23:05:05.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:05:05.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:05.238 -07 000000541 INF: FPGA: Recv ZSGSRD 29924
17-03-17 23:05:05.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:05.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:05.248 -07 000000415 INF: FPGA: Recv ZSGSRD 29925
17-03-17 23:05:05.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:05.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:05.258 -07 000000547 INF: FPGA: Recv ZSGSRD 29937
17-03-17 23:05:05.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:05.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:05.268 -07 000000415 INF: FPGA: Recv ZSGSRD 29920
17-03-17 23:05:05.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:05.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:05.278 -07 000000502 INF: FPGA: Recv ZSGSRD 29923
17-03-17 23:05:05.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:05.288 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:05:05.288 -07 000000541 INF: FPGA: Recv ZPIEZORD 25553
17-03-17 23:05:05.298 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:05.298 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.419 V. Piezo Error = -9.6 V.
17-03-17 23:05:05.298 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.6 um, Read 10 ADC samples: Avg = 29928 (-131.8 uncal um), Error = 0.8 uncal um, Median = 29928 (-131.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 29920 (-131.8 uncal um), Max = 29937 (-131.9 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 23:05:05.298 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29928, posNoise = 9, negNoise = 8
17-03-17 23:05:05.298 -07 000000610 INF: Z Motor: After move to -0.132566, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:05:05.298 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 23:05:05.298 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:05:05.298 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:05:05.298 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:05:05.298 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:05:05.298 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:05:05.298 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:05:05.298 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:05:05.298 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:05:05.298 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-17 23:05:05.298 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:05:05.298 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 4 ms.
17-03-17 23:05:05.298 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:05:05.308 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:05:05.308 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:05:05.308 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:05:05.308 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:05:05.318 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 23:05:05.318 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 23:05:05.318 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 23:05:05.318 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 23:05:05.318 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 466 466 224 224 29135 150\n [Camera]
17-03-17 23:05:05.518 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 195
17-03-17 23:05:05.978 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 658
17-03-17 23:05:05.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 658
17-03-17 23:05:05.988 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:05:05.988 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:05:05.988 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 23:05:05.988 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 658
17-03-17 23:05:05.988 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 658
17-03-17 23:05:05.988 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:05:05.988 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:05:05.988 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-17 23:05:06.178 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29135 851
17-03-17 23:05:06.328 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1001
17-03-17 23:05:06.358 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 23:05:06.358 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 23:05:06.358 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:05:06.358 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:05:06.368 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 23:05:06.368 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 23:05:06.368 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:05:06.368 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:05:06.368 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 23:05:06.368 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 23:05:06.548 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1225
17-03-17 23:05:06.548 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1225
17-03-17 23:05:06.548 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:05:06.548 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:05:06.548 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-17 23:05:06.548 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1225
17-03-17 23:05:06.548 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1225
17-03-17 23:05:06.558 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:05:06.558 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:05:06.558 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 23:05:06.738 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1418
17-03-17 23:05:06.738 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:05:06.738 -07 000000610 INF: FPGA: 'CAMDBLSNAP 466 466 224 224 29135 150' command took 2 ms to send, 1418 ms to get response, and 1425 ms overall
17-03-17 23:05:06.748 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:05:06.748 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56396484375, Z-Position -0.132587172989757. ------
17-03-17 23:05:06.748 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:05:06.748 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13899 mm
17-03-17 23:05:06.748 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:05:06.748 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 23:05:06.748 -07 000000623 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-17 23:05:06.748 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:05:06.748 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 30362, sync = True, waitForSettling = False)
17-03-17 23:05:06.758 -07 000000501 INF: Z Motor: Moving to -0.138988 mm, started at -0.132587 mm, distance = -6.40 um
17-03-17 23:05:06.758 -07 000000501 INF: FPGA: Xmit ZDACW 30362\n [Z Motor]
17-03-17 23:05:06.758 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:05:06.758 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 23:05:06.768 -07 000000501 INF: FPGA: 'ZDACW 30362' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:06.768 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:05:06.768 -07 000000486 INF: FPGA: Recv ZDACR 30362
17-03-17 23:05:06.778 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:05:06.778 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:06.778 -07 000000501 INF: Z Motor: MoveAbsStepped took 20 ms (did NOT wait for settling yet))
17-03-17 23:05:06.778 -07 000000627 INF: FPGA: Recv YRDPOS 126083
17-03-17 23:05:06.788 -07 000000593 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:05:06.788 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 23:05:06.788 -07 000000623 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:05:06.788 -07 000000623 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:05:06.788 -07 000000623 INF: Y Motor: Moving 1342 steps-18
17-03-17 23:05:06.798 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:05:06.948 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 23:05:06.948 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 23:05:06.948 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:05:06.958 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 23:05:06.958 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 23:05:06.958 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:05:06.958 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:05:06.958 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 23:05:06.958 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 23:05:06.968 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 23:05:06.988 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:05:06.988 -07 000000593 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 230 ms overall
17-03-17 23:05:07.038 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:05:07.038 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 70. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1132, R2=1178, Total=2310. Warn if over 250 bubbles per interval.
17-03-17 23:05:07.168 -07 000000409 INF: FPGA: Recv YMVTILE
17-03-17 23:05:07.168 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 23:05:07.208 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:05:07.218 -07 000000475 INF: FPGA: Recv YRDPOS 127786
17-03-17 23:05:07.218 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 5 ms to get response, and 5 ms overall
17-03-17 23:05:07.218 -07 000000623 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:05:07.218 -07 000000623 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 23:05:07.218 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.839 mm, average velocity = 2.161 mm/sec
17-03-17 23:05:08.168 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:05:08.168 -07 000000448 INF: FPGA: Recv YRDPOS 127786
17-03-17 23:05:08.178 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:08.178 -07 000000623 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:05:08.198 -07 000000623 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:05:08.198 -07 000000623 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:05:08.198 -07 000000623 INF: Y Motor: Moved to 62.3955 after 1445 ms (table move)
17-03-17 23:05:08.198 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138988 mm (DAC = 30362)
17-03-17 23:05:08.198 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:08.208 -07 000000502 INF: FPGA: Recv ZSGSRD 30932
17-03-17 23:05:08.208 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 23:05:08.208 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:08.208 -07 000000478 INF: FPGA: Recv ZSGSRD 30928
17-03-17 23:05:08.218 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:05:08.218 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:08.218 -07 000000415 INF: FPGA: Recv ZSGSRD 30916
17-03-17 23:05:08.228 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:08.228 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:08.228 -07 000000502 INF: FPGA: Recv ZSGSRD 30923
17-03-17 23:05:08.238 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:08.238 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:08.238 -07 000000409 INF: FPGA: Recv ZSGSRD 30924
17-03-17 23:05:08.248 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:08.248 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:08.248 -07 000000475 INF: FPGA: Recv ZSGSRD 30924
17-03-17 23:05:08.258 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:08.258 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:08.258 -07 000000448 INF: FPGA: Recv ZSGSRD 30927
17-03-17 23:05:08.268 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:08.268 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:08.268 -07 000000618 INF: FPGA: Recv ZSGSRD 30915
17-03-17 23:05:08.278 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:08.278 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:08.278 -07 000000429 INF: FPGA: Recv ZSGSRD 30930
17-03-17 23:05:08.288 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:08.288 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:08.288 -07 000000382 INF: FPGA: Recv ZSGSRD 30934
17-03-17 23:05:08.298 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:08.298 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:05:08.298 -07 000000593 INF: FPGA: Recv ZPIEZORD 26822
17-03-17 23:05:08.308 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:08.308 -07 000000561 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.633 V. Piezo Error = -9.0 V.
17-03-17 23:05:08.308 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.0 um, Read 10 ADC samples: Avg = 30925 (-138.2 uncal um), Error = 0.8 uncal um, Median = 30926 (-138.2 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 30915 (-138.1 uncal um), Max = 30934 (-138.2 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 23:05:08.308 -07 000000561 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30925, posNoise = 9, negNoise = 10
17-03-17 23:05:08.308 -07 000000561 INF: Z Motor: After move to -0.138988, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:05:08.308 -07 000000561 INF: Z Motor: Settle wait time = 1448 ms, measure time = 102 ms (allowed 150 ms), total time = 1550 ms
17-03-17 23:05:08.308 -07 000000561 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 23:05:08.358 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-17 23:05:08.358 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:05:08.358 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:05:08.358 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:05:08.358 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:05:08.358 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:05:08.358 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:05:08.358 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:05:08.358 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:05:08.358 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:05:08.368 -07 000000409 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 71, FrontChillerTemperature: 3.981281,
17-03-17 23:05:08.368 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:05:08.368 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:05:08.378 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 23:05:08.378 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 23:05:08.398 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:05:08.438 -07 000000448 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:05:08.638 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:05:08.638 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:05:08.638 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:05:08.638 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 679626736, 0x0, 559484976) start.
17-03-17 23:05:08.678 -07 000000593 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:05:08.678 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 23:05:08.678 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 300 ms overall
17-03-17 23:05:08.758 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 679626736, 0x0, 559484976) end. Duration was 118 ms.
17-03-17 23:05:08.758 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:05:08.758 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 23:05:08.758 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-17 23:05:08.778 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:05:08.778 -07 000000486 INF: Autofocus start
17-03-17 23:05:08.778 -07 000000486 INF: MeasureProfile start
17-03-17 23:05:08.788 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:05:08.788 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:05:08.788 -07 000000429 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:05:08.798 -07 000000486 INF: MeasureProfile done
17-03-17 23:05:08.798 -07 000000486 INF: X=16  Z correction [um]=0.0530179
17-03-17 23:05:08.798 -07 000000486 INF: Autofocus finished
17-03-17 23:05:08.988 -07 000000448 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:05:08.988 -07 000000429 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:05:08.988 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.138992112495093. ----------
17-03-17 23:05:08.998 -07 000000610 INF: Cycle	71	Tile	4	Exposure Settings		A	466	G	224	T	224	C	466
17-03-17 23:05:08.998 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28886, sync = True, waitForSettling = True)
17-03-17 23:05:08.998 -07 000000610 INF: Z Motor: Moving to -0.132232 mm, started at -0.138992 mm, distance = 6.76 um
17-03-17 23:05:08.998 -07 000000610 INF: FPGA: Xmit ZDACW 28886\n [Z Motor]
17-03-17 23:05:08.998 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 23:05:09.008 -07 000000610 INF: FPGA: 'ZDACW 28886' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:05:09.008 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:05:09.008 -07 000000576 INF: FPGA: Recv ZDACR 28886
17-03-17 23:05:09.018 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:09.018 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:05:09.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:09.168 -07 000000618 INF: FPGA: Recv ZSGSRD 29878
17-03-17 23:05:09.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:09.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:09.178 -07 000000502 INF: FPGA: Recv ZSGSRD 29874
17-03-17 23:05:09.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:09.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:09.188 -07 000000429 INF: FPGA: Recv ZSGSRD 29870
17-03-17 23:05:09.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:09.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:09.198 -07 000000593 INF: FPGA: Recv ZSGSRD 29872
17-03-17 23:05:09.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:09.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:09.208 -07 000000576 INF: FPGA: Recv ZSGSRD 29871
17-03-17 23:05:09.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:09.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:09.218 -07 000000547 INF: FPGA: Recv ZSGSRD 29872
17-03-17 23:05:09.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:09.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:09.228 -07 000000482 INF: FPGA: Recv ZSGSRD 29872
17-03-17 23:05:09.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:09.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:09.238 -07 000000429 INF: FPGA: Recv ZSGSRD 29871
17-03-17 23:05:09.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:05:09.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:09.248 -07 000000409 INF: FPGA: Recv ZSGSRD 29871
17-03-17 23:05:09.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:09.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:09.258 -07 000000576 INF: FPGA: Recv ZSGSRD 29875
17-03-17 23:05:09.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:09.268 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:05:09.268 -07 000000462 INF: FPGA: Recv ZPIEZORD 25482
17-03-17 23:05:09.278 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:09.278 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.408 V. Piezo Error = -9.6 V.
17-03-17 23:05:09.278 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.2 um, Read 10 ADC samples: Avg = 29873 (-131.4 uncal um), Error = 0.8 uncal um, Median = 29872 (-131.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29870 (-131.4 uncal um), Max = 29878 (-131.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 23:05:09.278 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29873, posNoise = 5, negNoise = 3
17-03-17 23:05:09.278 -07 000000610 INF: Z Motor: After move to -0.132232, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:05:09.278 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 23:05:09.278 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:05:09.278 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:05:09.278 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:05:09.278 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:05:09.278 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:05:09.278 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:05:09.278 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:05:09.278 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:05:09.278 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:05:09.278 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:05:09.278 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:05:09.278 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:05:09.288 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:05:09.288 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:05:09.288 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 23:05:09.288 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:05:09.298 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 23:05:09.298 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 23:05:09.298 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 23:05:09.298 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 23:05:09.298 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 466 466 224 224 29063 150\n [Camera]
17-03-17 23:05:09.498 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:05:09.968 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 658
17-03-17 23:05:09.968 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 658
17-03-17 23:05:09.968 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:05:09.968 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:05:09.968 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 23:05:09.968 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 658
17-03-17 23:05:09.968 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 658
17-03-17 23:05:09.968 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:05:09.968 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:05:09.968 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 23:05:10.158 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29063 851
17-03-17 23:05:10.308 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1001
17-03-17 23:05:10.348 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 23:05:10.348 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 23:05:10.348 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:05:10.348 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 23:05:10.348 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 23:05:10.348 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:05:10.348 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:05:10.348 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:05:10.348 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 23:05:10.358 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 23:05:10.528 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1225
17-03-17 23:05:10.528 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1225
17-03-17 23:05:10.528 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:05:10.528 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:05:10.528 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 23:05:10.538 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1225
17-03-17 23:05:10.538 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1225
17-03-17 23:05:10.538 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:05:10.538 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:05:10.538 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 23:05:10.718 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP 1418
17-03-17 23:05:10.728 -07 000000486 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:05:10.728 -07 000000610 INF: FPGA: 'CAMDBLSNAP 466 466 224 224 29063 150' command took 2 ms to send, 1420 ms to get response, and 1424 ms overall
17-03-17 23:05:10.728 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:05:10.728 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.3955078125, Z-Position -0.13223384132196. ------
17-03-17 23:05:10.728 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:05:10.728 -07 000000409 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13899 mm
17-03-17 23:05:10.728 -07 000000409 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:05:10.728 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:05:10.738 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:05:10.738 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:05:10.738 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 30362, sync = True, waitForSettling = False)
17-03-17 23:05:10.738 -07 000000502 INF: Z Motor: Moving to -0.138988 mm, started at -0.132234 mm, distance = -6.75 um
17-03-17 23:05:10.738 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 23:05:10.738 -07 000000541 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-17 23:05:10.748 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:05:10.748 -07 000000482 INF: FPGA: Recv YRDPOS 127786
17-03-17 23:05:10.758 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 23:05:10.758 -07 000000502 INF: FPGA: Xmit ZDACW 30362\n [Z Motor]
17-03-17 23:05:10.758 -07 000000541 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:05:10.758 -07 000000541 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:05:10.758 -07 000000541 INF: Y Motor: Moving 1339 steps-15
17-03-17 23:05:10.758 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 23:05:10.768 -07 000000502 INF: FPGA: 'ZDACW 30362' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 23:05:10.768 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:05:10.768 -07 000000547 INF: FPGA: Recv ZDACR 30362
17-03-17 23:05:10.778 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:10.778 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:05:10.778 -07 000000502 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-17 23:05:10.928 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 23:05:10.928 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 23:05:10.928 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:05:10.928 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 23:05:10.928 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 23:05:10.928 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:05:10.938 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:05:10.938 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:05:10.938 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:05:10.938 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 23:05:10.938 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 23:05:10.948 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 23:05:11.148 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 23:05:11.148 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 23:05:11.188 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:05:11.198 -07 000000478 INF: FPGA: Recv YRDPOS 129483
17-03-17 23:05:11.198 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 23:05:11.198 -07 000000541 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:05:11.198 -07 000000541 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 23:05:11.198 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.837 mm, average velocity = 2.109 mm/sec
17-03-17 23:05:12.038 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:05:12.038 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 70. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1132, R2=1178, Total=2310. Warn if over 250 bubbles per interval.
17-03-17 23:05:12.148 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:05:12.148 -07 000000618 INF: FPGA: Recv YRDPOS 129483
17-03-17 23:05:12.158 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:05:12.158 -07 000000541 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:05:12.178 -07 000000541 INF: Y Motor: After move to 63.232609, error = -0.008488, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:05:12.178 -07 000000541 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:05:12.178 -07 000000541 INF: Y Motor: Moved to 63.2241 after 1441 ms (table move)
17-03-17 23:05:12.178 -07 000000409 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138988 mm (DAC = 30362)
17-03-17 23:05:12.178 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:12.188 -07 000000482 INF: FPGA: Recv ZSGSRD 30926
17-03-17 23:05:12.188 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 23:05:12.188 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:12.188 -07 000000502 INF: FPGA: Recv ZSGSRD 30925
17-03-17 23:05:12.198 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:05:12.198 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:12.198 -07 000000462 INF: FPGA: Recv ZSGSRD 30928
17-03-17 23:05:12.208 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:12.208 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:12.208 -07 000000547 INF: FPGA: Recv ZSGSRD 30929
17-03-17 23:05:12.218 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:12.218 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:12.218 -07 000000478 INF: FPGA: Recv ZSGSRD 30918
17-03-17 23:05:12.228 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:12.228 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:12.228 -07 000000475 INF: FPGA: Recv ZSGSRD 30915
17-03-17 23:05:12.238 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:12.238 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:12.238 -07 000000486 INF: FPGA: Recv ZSGSRD 30924
17-03-17 23:05:12.248 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:12.248 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:12.248 -07 000000482 INF: FPGA: Recv ZSGSRD 30924
17-03-17 23:05:12.258 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:12.258 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:12.258 -07 000000547 INF: FPGA: Recv ZSGSRD 30921
17-03-17 23:05:12.268 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:12.268 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:12.268 -07 000000576 INF: FPGA: Recv ZSGSRD 30922
17-03-17 23:05:12.278 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:12.278 -07 000000409 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:05:12.278 -07 000000475 INF: FPGA: Recv ZPIEZORD 26853
17-03-17 23:05:12.288 -07 000000409 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:12.288 -07 000000409 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.633 V. Piezo Error = -9.0 V.
17-03-17 23:05:12.288 -07 000000409 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.0 um, Read 10 ADC samples: Avg = 30923 (-138.2 uncal um), Error = 0.8 uncal um, Median = 30924 (-138.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30915 (-138.1 uncal um), Max = 30929 (-138.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 23:05:12.288 -07 000000409 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30923, posNoise = 6, negNoise = 8
17-03-17 23:05:12.288 -07 000000409 INF: Z Motor: After move to -0.138988, error = 0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:05:12.288 -07 000000409 INF: Z Motor: Settle wait time = 1446 ms, measure time = 102 ms (allowed 150 ms), total time = 1548 ms
17-03-17 23:05:12.288 -07 000000409 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 23:05:12.338 -07 000000409 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-17 23:05:12.338 -07 000000409 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:05:12.338 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:05:12.338 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:05:12.338 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:05:12.338 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:05:12.338 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:05:12.338 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:05:12.338 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:05:12.338 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:05:12.348 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 23:05:12.348 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:05:12.358 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 23:05:12.358 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 23:05:12.358 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:05:12.408 -07 000000547 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:05:12.608 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:05:12.608 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:05:12.608 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:05:12.608 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2671610696, 0x0, 559484976) start.
17-03-17 23:05:12.648 -07 000000486 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:05:12.648 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-17 23:05:12.648 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 23:05:12.718 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2671610696, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 23:05:12.718 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:05:12.728 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 23:05:12.728 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 23:05:12.748 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:05:12.748 -07 000000462 INF: Autofocus start
17-03-17 23:05:12.748 -07 000000462 INF: MeasureProfile start
17-03-17 23:05:12.748 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:05:12.758 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:05:12.758 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:05:12.768 -07 000000462 INF: MeasureProfile done
17-03-17 23:05:12.768 -07 000000462 INF: X=-6  Z correction [um]=-0.03260989
17-03-17 23:05:12.768 -07 000000462 INF: Autofocus finished
17-03-17 23:05:12.958 -07 000000547 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:05:12.958 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:05:12.958 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22412109375, Z-position -0.138979264070809. ----------
17-03-17 23:05:12.968 -07 000000610 INF: Cycle	71	Tile	5	Exposure Settings		A	466	G	224	T	224	C	466
17-03-17 23:05:12.968 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28867, sync = True, waitForSettling = True)
17-03-17 23:05:12.968 -07 000000610 INF: Z Motor: Moving to -0.132145 mm, started at -0.138979 mm, distance = 6.83 um
17-03-17 23:05:12.968 -07 000000610 INF: FPGA: Xmit ZDACW 28867\n [Z Motor]
17-03-17 23:05:12.968 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 23:05:12.978 -07 000000610 INF: FPGA: 'ZDACW 28867' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:05:12.978 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:05:12.978 -07 000000623 INF: FPGA: Recv ZDACR 28867
17-03-17 23:05:12.988 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:12.988 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:05:13.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:13.138 -07 000000448 INF: FPGA: Recv ZSGSRD 29863
17-03-17 23:05:13.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:05:13.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:13.148 -07 000000593 INF: FPGA: Recv ZSGSRD 29865
17-03-17 23:05:13.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:13.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:13.158 -07 000000486 INF: FPGA: Recv ZSGSRD 29857
17-03-17 23:05:13.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:13.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:13.168 -07 000000409 INF: FPGA: Recv ZSGSRD 29861
17-03-17 23:05:13.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:13.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:13.178 -07 000000576 INF: FPGA: Recv ZSGSRD 29862
17-03-17 23:05:13.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:13.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:13.188 -07 000000478 INF: FPGA: Recv ZSGSRD 29862
17-03-17 23:05:13.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:13.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:13.198 -07 000000415 INF: FPGA: Recv ZSGSRD 29852
17-03-17 23:05:13.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:13.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:13.208 -07 000000541 INF: FPGA: Recv ZSGSRD 29860
17-03-17 23:05:13.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:13.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:13.218 -07 000000486 INF: FPGA: Recv ZSGSRD 29865
17-03-17 23:05:13.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:13.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:13.228 -07 000000576 INF: FPGA: Recv ZSGSRD 29860
17-03-17 23:05:13.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:13.238 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:05:13.238 -07 000000409 INF: FPGA: Recv ZPIEZORD 25442
17-03-17 23:05:13.248 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:13.248 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.405 V. Piezo Error = -9.7 V.
17-03-17 23:05:13.248 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.1 um, Read 10 ADC samples: Avg = 29861 (-131.4 uncal um), Error = 0.8 uncal um, Median = 29862 (-131.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29852 (-131.3 uncal um), Max = 29865 (-131.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 23:05:13.248 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29861, posNoise = 4, negNoise = 9
17-03-17 23:05:13.248 -07 000000610 INF: Z Motor: After move to -0.132145, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:05:13.248 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 23:05:13.248 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:05:13.248 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:05:13.248 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:05:13.248 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:05:13.248 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:05:13.248 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:05:13.248 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:05:13.248 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:05:13.248 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:05:13.248 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:05:13.248 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 23:05:13.248 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:05:13.258 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 23:05:13.258 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:05:13.258 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:05:13.258 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:05:13.268 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 23:05:13.268 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 23:05:13.268 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 23:05:13.268 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 23:05:13.268 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 466 466 224 224 29044 150\n [Camera]
17-03-17 23:05:13.468 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:05:13.748 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 71, FrontChillerTemperature: 3.993549,
17-03-17 23:05:13.928 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 658
17-03-17 23:05:13.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 658
17-03-17 23:05:13.928 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:05:13.928 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:05:13.928 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 23:05:13.938 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 658
17-03-17 23:05:13.938 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 658
17-03-17 23:05:13.938 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:05:13.938 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:05:13.938 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 23:05:14.128 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29044 851
17-03-17 23:05:14.278 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1001
17-03-17 23:05:14.318 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 23:05:14.318 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 23:05:14.318 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:05:14.318 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 23:05:14.318 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 23:05:14.318 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:05:14.318 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:05:14.318 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 23:05:14.318 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:05:14.328 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 23:05:14.498 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1225
17-03-17 23:05:14.498 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1225
17-03-17 23:05:14.498 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:05:14.498 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:05:14.498 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 23:05:14.498 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1225
17-03-17 23:05:14.498 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1225
17-03-17 23:05:14.498 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:05:14.498 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:05:14.498 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 23:05:14.688 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1418
17-03-17 23:05:14.688 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:05:14.688 -07 000000610 INF: FPGA: 'CAMDBLSNAP 466 466 224 224 29044 150' command took 2 ms to send, 1417 ms to get response, and 1424 ms overall
17-03-17 23:05:14.688 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:05:14.688 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22412109375, Z-Position -0.132156750776259. ------
17-03-17 23:05:14.698 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:05:14.698 -07 000000541 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13861 mm
17-03-17 23:05:14.698 -07 000000541 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:05:14.698 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 23:05:14.698 -07 000000462 INF: Y Motor: Moving to 64.0626 mm, started at 63.2241 mm, delta = 0.8385 mm
17-03-17 23:05:14.698 -07 000000482 INF: Z Motor: Entering MoveAbsStepped (DAC = 30279, sync = True, waitForSettling = False)
17-03-17 23:05:14.698 -07 000000482 INF: Z Motor: Moving to -0.138608 mm, started at -0.132157 mm, distance = -6.45 um
17-03-17 23:05:14.698 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:05:14.708 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:05:14.708 -07 000000482 INF: FPGA: Xmit ZDACW 30279\n [Z Motor]
17-03-17 23:05:14.708 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 23:05:14.718 -07 000000482 INF: FPGA: 'ZDACW 30279' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 23:05:14.718 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:05:14.718 -07 000000593 INF: FPGA: Recv YRDPOS 129483
17-03-17 23:05:14.728 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 23:05:14.728 -07 000000462 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:05:14.728 -07 000000462 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:05:14.728 -07 000000462 INF: Y Motor: Moving 1342 steps-17
17-03-17 23:05:14.728 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:05:14.738 -07 000000482 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:05:14.738 -07 000000593 INF: FPGA: Recv ZDACR 30279
17-03-17 23:05:14.748 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:05:14.748 -07 000000482 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:05:14.748 -07 000000482 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 23:05:14.888 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 23:05:14.888 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 23:05:14.888 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:05:14.888 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 23:05:14.888 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 23:05:14.888 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:05:14.898 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:05:14.898 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 23:05:14.898 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 23:05:14.908 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 23:05:14.928 -07 000000482 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:05:14.928 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 195 ms to get response, and 225 ms overall
17-03-17 23:05:15.118 -07 000000409 INF: FPGA: Recv YMVTILE
17-03-17 23:05:15.118 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 23:05:15.168 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:05:15.168 -07 000000593 INF: FPGA: Recv YRDPOS 131189
17-03-17 23:05:15.178 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:15.178 -07 000000462 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:05:15.178 -07 000000462 INF: Y Motor: Position error before settling (table move) = -11 encoder counts (-0.005 mm)
17-03-17 23:05:15.178 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.838 mm, average velocity = 2.107 mm/sec
17-03-17 23:05:16.128 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:05:16.128 -07 000000382 INF: FPGA: Recv YRDPOS 131189
17-03-17 23:05:16.138 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:05:16.138 -07 000000462 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:05:16.158 -07 000000462 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:05:16.158 -07 000000462 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:05:16.158 -07 000000462 INF: Y Motor: Moved to 64.0571 after 1453 ms (table move)
17-03-17 23:05:16.158 -07 000000541 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138608 mm (DAC = 30279)
17-03-17 23:05:16.158 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:16.158 -07 000000551 INF: FPGA: Recv ZSGSRD 30866
17-03-17 23:05:16.168 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:05:16.168 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:16.168 -07 000000593 INF: FPGA: Recv ZSGSRD 30869
17-03-17 23:05:16.178 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:16.178 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:16.178 -07 000000618 INF: FPGA: Recv ZSGSRD 30869
17-03-17 23:05:16.188 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:16.188 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:16.188 -07 000000547 INF: FPGA: Recv ZSGSRD 30870
17-03-17 23:05:16.198 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:16.198 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:16.198 -07 000000429 INF: FPGA: Recv ZSGSRD 30865
17-03-17 23:05:16.208 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:16.208 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:16.208 -07 000000627 INF: FPGA: Recv ZSGSRD 30862
17-03-17 23:05:16.218 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:16.218 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:16.218 -07 000000475 INF: FPGA: Recv ZSGSRD 30863
17-03-17 23:05:16.228 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:16.228 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:16.228 -07 000000415 INF: FPGA: Recv ZSGSRD 30871
17-03-17 23:05:16.238 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:16.238 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:16.238 -07 000000482 INF: FPGA: Recv ZSGSRD 30864
17-03-17 23:05:16.248 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:16.248 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:16.248 -07 000000462 INF: FPGA: Recv ZSGSRD 30868
17-03-17 23:05:16.258 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:16.258 -07 000000541 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:05:16.258 -07 000000551 INF: FPGA: Recv ZPIEZORD 26762
17-03-17 23:05:16.268 -07 000000541 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:16.268 -07 000000541 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.620 V. Piezo Error = -9.0 V.
17-03-17 23:05:16.268 -07 000000541 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.6 um, Read 10 ADC samples: Avg = 30867 (-137.8 uncal um), Error = 0.8 uncal um, Median = 30867 (-137.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30862 (-137.8 uncal um), Max = 30871 (-137.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:05:16.268 -07 000000541 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30867, posNoise = 4, negNoise = 5
17-03-17 23:05:16.268 -07 000000541 INF: Z Motor: After move to -0.138608, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:05:16.268 -07 000000541 INF: Z Motor: Settle wait time = 1458 ms, measure time = 104 ms (allowed 150 ms), total time = 1562 ms
17-03-17 23:05:16.268 -07 000000541 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 23:05:16.318 -07 000000541 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1614 ms
17-03-17 23:05:16.318 -07 000000541 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:05:16.318 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:05:16.318 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:05:16.318 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:05:16.318 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:05:16.318 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:05:16.318 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:05:16.318 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:05:16.318 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:05:16.328 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:05:16.328 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:05:16.338 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 23:05:16.338 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 23:05:16.338 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:05:16.378 -07 000000475 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:05:16.578 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:05:16.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:05:16.588 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:05:16.588 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) start.
17-03-17 23:05:16.618 -07 000000593 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:05:16.618 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-17 23:05:16.628 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 23:05:16.708 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) end. Duration was 128 ms.
17-03-17 23:05:16.708 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:05:16.718 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:05:16.718 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 131 ms.
17-03-17 23:05:16.728 -07 000000382 INF: Autofocus start
17-03-17 23:05:16.728 -07 000000382 INF: MeasureProfile start
17-03-17 23:05:16.728 -07 000000409 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:05:16.728 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:05:16.738 -07 000000409 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:05:16.738 -07 000000409 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:05:16.748 -07 000000382 INF: MeasureProfile done
17-03-17 23:05:16.748 -07 000000382 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 23:05:16.748 -07 000000382 INF: Autofocus finished
17-03-17 23:05:16.938 -07 000000415 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:05:16.938 -07 000000409 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:05:16.938 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.13861950819087. ----------
17-03-17 23:05:16.938 -07 000000610 INF: Cycle	71	Tile	6	Exposure Settings		A	466	G	224	T	224	C	466
17-03-17 23:05:16.948 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28774, sync = True, waitForSettling = True)
17-03-17 23:05:16.948 -07 000000610 INF: Z Motor: Moving to -0.131719 mm, started at -0.138620 mm, distance = 6.90 um
17-03-17 23:05:16.948 -07 000000610 INF: FPGA: Xmit ZDACW 28774\n [Z Motor]
17-03-17 23:05:16.948 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 23:05:16.958 -07 000000610 INF: FPGA: 'ZDACW 28774' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:05:16.958 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:05:16.958 -07 000000501 INF: FPGA: Recv ZDACR 28774
17-03-17 23:05:16.968 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:16.968 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:05:17.038 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:05:17.038 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 70. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1132, R2=1178, Total=2310. Warn if over 250 bubbles per interval.
17-03-17 23:05:17.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:17.118 -07 000000547 INF: FPGA: Recv ZSGSRD 29799
17-03-17 23:05:17.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:05:17.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:17.128 -07 000000561 INF: FPGA: Recv ZSGSRD 29790
17-03-17 23:05:17.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:17.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:17.138 -07 000000478 INF: FPGA: Recv ZSGSRD 29794
17-03-17 23:05:17.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:17.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:17.148 -07 000000618 INF: FPGA: Recv ZSGSRD 29795
17-03-17 23:05:17.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:17.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:17.158 -07 000000429 INF: FPGA: Recv ZSGSRD 29790
17-03-17 23:05:17.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:17.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:17.168 -07 000000576 INF: FPGA: Recv ZSGSRD 29794
17-03-17 23:05:17.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:17.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:17.178 -07 000000502 INF: FPGA: Recv ZSGSRD 29794
17-03-17 23:05:17.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:17.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:17.188 -07 000000623 INF: FPGA: Recv ZSGSRD 29798
17-03-17 23:05:17.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:17.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:17.198 -07 000000486 INF: FPGA: Recv ZSGSRD 29791
17-03-17 23:05:17.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:17.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:17.208 -07 000000627 INF: FPGA: Recv ZSGSRD 29792
17-03-17 23:05:17.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:17.218 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:05:17.218 -07 000000551 INF: FPGA: Recv ZPIEZORD 25397
17-03-17 23:05:17.228 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:17.228 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.391 V. Piezo Error = -9.7 V.
17-03-17 23:05:17.228 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.7 um, Read 10 ADC samples: Avg = 29794 (-130.9 uncal um), Error = 0.8 uncal um, Median = 29794 (-130.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29790 (-130.9 uncal um), Max = 29799 (-131.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:05:17.228 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29794, posNoise = 5, negNoise = 4
17-03-17 23:05:17.228 -07 000000610 INF: Z Motor: After move to -0.131719, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:05:17.228 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 23:05:17.228 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:05:17.228 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:05:17.228 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:05:17.228 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:05:17.228 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:05:17.228 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:05:17.228 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:05:17.228 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:05:17.228 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 23:05:17.228 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:05:17.228 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:05:17.228 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:05:17.238 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 23:05:17.238 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:05:17.238 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 23:05:17.238 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:05:17.238 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 23:05:17.238 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 23:05:17.248 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 23:05:17.248 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:05:17.248 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 466 466 224 224 28950 150\n [Camera]
17-03-17 23:05:17.448 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:05:17.908 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 658
17-03-17 23:05:17.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 658
17-03-17 23:05:17.918 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:05:17.918 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:05:17.918 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-17 23:05:17.918 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 658
17-03-17 23:05:17.918 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 658
17-03-17 23:05:17.918 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:05:17.918 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:05:17.918 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) start.
17-03-17 23:05:18.108 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28950 851
17-03-17 23:05:18.258 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1001
17-03-17 23:05:18.298 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 23:05:18.298 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 23:05:18.298 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:05:18.298 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 23:05:18.298 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 23:05:18.298 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:05:18.298 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:05:18.298 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 23:05:18.298 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:05:18.308 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 23:05:18.478 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1225
17-03-17 23:05:18.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1225
17-03-17 23:05:18.478 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:05:18.608 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1225
17-03-17 23:05:18.608 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1225
17-03-17 23:05:18.608 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:05:18.608 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:05:18.608 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) start.
17-03-17 23:05:18.618 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:05:18.618 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-17 23:05:18.668 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1418
17-03-17 23:05:18.668 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:05:18.668 -07 000000610 INF: FPGA: 'CAMDBLSNAP 466 466 224 224 28950 150' command took 2 ms to send, 1418 ms to get response, and 1425 ms overall
17-03-17 23:05:18.678 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:05:18.678 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05712890625, Z-Position -0.131726328562761. ------
17-03-17 23:05:18.678 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:05:18.678 -07 000000541 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13831 mm
17-03-17 23:05:18.678 -07 000000541 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:05:18.678 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:05:18.678 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 23:05:18.678 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 30214, sync = True, waitForSettling = False)
17-03-17 23:05:18.678 -07 000000561 INF: Z Motor: Moving to -0.138311 mm, started at -0.131726 mm, distance = -6.58 um
17-03-17 23:05:18.678 -07 000000382 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-17 23:05:18.688 -07 000000561 INF: FPGA: Xmit ZDACW 30214\n [Z Motor]
17-03-17 23:05:18.688 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:05:18.688 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 23:05:18.698 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:05:18.698 -07 000000561 INF: FPGA: 'ZDACW 30214' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 23:05:18.698 -07 000000576 INF: FPGA: Recv YRDPOS 131189
17-03-17 23:05:18.708 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 23:05:18.708 -07 000000382 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:05:18.708 -07 000000382 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:05:18.708 -07 000000382 INF: Y Motor: Moving 1337 steps-11
17-03-17 23:05:18.708 -07 000000482 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:05:18.718 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:05:18.718 -07 000000409 INF: FPGA: Recv ZDACR 30214
17-03-17 23:05:18.728 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:05:18.728 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 23:05:18.728 -07 000000561 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-17 23:05:18.908 -07 000000623 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:05:18.908 -07 000000482 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 223 ms overall
17-03-17 23:05:19.008 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 23:05:19.008 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 23:05:19.008 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:05:19.008 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 23:05:19.008 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 23:05:19.008 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:05:19.018 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:05:19.018 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:05:19.018 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 535 ms.
17-03-17 23:05:19.018 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 23:05:19.108 -07 000000486 INF: FPGA: Recv YMVTILE
17-03-17 23:05:19.108 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 401 ms overall
17-03-17 23:05:19.128 -07 000000409 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 71, FrontChillerTemperature: 4.030322,
17-03-17 23:05:19.168 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:05:19.168 -07 000000623 INF: FPGA: Recv YRDPOS 132872
17-03-17 23:05:19.178 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 23:05:19.178 -07 000000382 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:05:19.178 -07 000000382 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 23:05:19.178 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 401 ms, distance = 0.835 mm, average velocity = 2.083 mm/sec
17-03-17 23:05:20.128 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:05:20.128 -07 000000415 INF: FPGA: Recv YRDPOS 132872
17-03-17 23:05:20.138 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:05:20.138 -07 000000382 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:05:20.158 -07 000000382 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:05:20.158 -07 000000382 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:05:20.158 -07 000000382 INF: Y Motor: Moved to 64.8789 after 1476 ms (table move)
17-03-17 23:05:20.158 -07 000000541 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138311 mm (DAC = 30214)
17-03-17 23:05:20.158 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:20.168 -07 000000561 INF: FPGA: Recv ZSGSRD 30826
17-03-17 23:05:20.168 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 23:05:20.168 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:20.168 -07 000000482 INF: FPGA: Recv ZSGSRD 30826
17-03-17 23:05:20.178 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:05:20.178 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:20.178 -07 000000623 INF: FPGA: Recv ZSGSRD 30820
17-03-17 23:05:20.188 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:20.188 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:20.188 -07 000000415 INF: FPGA: Recv ZSGSRD 30824
17-03-17 23:05:20.198 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:20.198 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:20.198 -07 000000593 INF: FPGA: Recv ZSGSRD 30821
17-03-17 23:05:20.208 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:20.208 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:20.208 -07 000000475 INF: FPGA: Recv ZSGSRD 30829
17-03-17 23:05:20.218 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:20.218 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:20.218 -07 000000448 INF: FPGA: Recv ZSGSRD 30820
17-03-17 23:05:20.228 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:20.228 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:20.228 -07 000000623 INF: FPGA: Recv ZSGSRD 30810
17-03-17 23:05:20.238 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:20.238 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:20.238 -07 000000415 INF: FPGA: Recv ZSGSRD 30817
17-03-17 23:05:20.248 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:20.248 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:20.248 -07 000000593 INF: FPGA: Recv ZSGSRD 30818
17-03-17 23:05:20.258 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:20.258 -07 000000541 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:05:20.258 -07 000000561 INF: FPGA: Recv ZPIEZORD 26724
17-03-17 23:05:20.268 -07 000000541 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:20.268 -07 000000541 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.610 V. Piezo Error = -9.0 V.
17-03-17 23:05:20.268 -07 000000541 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.3 um, Read 10 ADC samples: Avg = 30821 (-137.5 uncal um), Error = 0.8 uncal um, Median = 30820 (-137.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 30810 (-137.5 uncal um), Max = 30829 (-137.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 23:05:20.268 -07 000000541 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30821, posNoise = 8, negNoise = 11
17-03-17 23:05:20.268 -07 000000541 INF: Z Motor: After move to -0.138311, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:05:20.268 -07 000000541 INF: Z Motor: Settle wait time = 1480 ms, measure time = 101 ms (allowed 150 ms), total time = 1581 ms
17-03-17 23:05:20.268 -07 000000541 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 23:05:20.318 -07 000000541 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1634 ms
17-03-17 23:05:20.318 -07 000000541 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:05:20.318 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:05:20.318 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:05:20.318 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:05:20.318 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:05:20.318 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:05:20.318 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:05:20.318 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:05:20.318 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:05:20.328 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:05:20.328 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:05:20.328 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 23:05:20.328 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 23:05:20.338 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:05:20.378 -07 000000482 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:05:20.578 -07 000000478 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:05:20.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:05:20.578 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:05:20.578 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2415923248, 0x0, 559484976) start.
17-03-17 23:05:20.618 -07 000000593 INF: FPGA: Recv @CAMSNAP 283
17-03-17 23:05:20.628 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 23:05:20.628 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 288 ms overall
17-03-17 23:05:20.698 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2415923248, 0x0, 559484976) end. Duration was 113 ms.
17-03-17 23:05:20.698 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:05:20.698 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:05:20.698 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-17 23:05:20.728 -07 000000382 INF: Autofocus start
17-03-17 23:05:20.728 -07 000000382 INF: MeasureProfile start
17-03-17 23:05:20.728 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:05:20.728 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:05:20.738 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:05:20.738 -07 000000541 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:05:20.738 -07 000000382 INF: MeasureProfile done
17-03-17 23:05:20.738 -07 000000382 INF: X=-48  Z correction [um]=-0.2370583
17-03-17 23:05:20.738 -07 000000382 INF: Autofocus finished
17-03-17 23:05:20.938 -07 000000448 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:05:20.938 -07 000000541 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:05:20.938 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.138323994432349. ----------
17-03-17 23:05:20.938 -07 000000610 INF: Cycle	71	Tile	7	Exposure Settings		A	466	G	224	T	224	C	466
17-03-17 23:05:20.948 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28675, sync = True, waitForSettling = True)
17-03-17 23:05:20.948 -07 000000610 INF: Z Motor: Moving to -0.131266 mm, started at -0.138324 mm, distance = 7.06 um
17-03-17 23:05:20.948 -07 000000610 INF: FPGA: Xmit ZDACW 28675\n [Z Motor]
17-03-17 23:05:20.948 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 23:05:20.958 -07 000000610 INF: FPGA: 'ZDACW 28675' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:05:20.958 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:05:20.958 -07 000000551 INF: FPGA: Recv ZDACR 28675
17-03-17 23:05:20.968 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:20.968 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:05:21.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:21.118 -07 000000623 INF: FPGA: Recv ZSGSRD 29727
17-03-17 23:05:21.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:05:21.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:21.128 -07 000000501 INF: FPGA: Recv ZSGSRD 29725
17-03-17 23:05:21.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:21.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:21.138 -07 000000627 INF: FPGA: Recv ZSGSRD 29726
17-03-17 23:05:21.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:21.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:21.148 -07 000000576 INF: FPGA: Recv ZSGSRD 29717
17-03-17 23:05:21.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:21.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:21.158 -07 000000551 INF: FPGA: Recv ZSGSRD 29718
17-03-17 23:05:21.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:21.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:21.168 -07 000000623 INF: FPGA: Recv ZSGSRD 29730
17-03-17 23:05:21.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:21.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:21.178 -07 000000541 INF: FPGA: Recv ZSGSRD 29714
17-03-17 23:05:21.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:21.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:21.188 -07 000000502 INF: FPGA: Recv ZSGSRD 29727
17-03-17 23:05:21.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:21.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:21.198 -07 000000448 INF: FPGA: Recv ZSGSRD 29721
17-03-17 23:05:21.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:21.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:21.208 -07 000000627 INF: FPGA: Recv ZSGSRD 29727
17-03-17 23:05:21.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:21.218 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:05:21.218 -07 000000382 INF: FPGA: Recv ZPIEZORD 25310
17-03-17 23:05:21.228 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:21.228 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.376 V. Piezo Error = -9.7 V.
17-03-17 23:05:21.228 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.3 um, Read 10 ADC samples: Avg = 29723 (-130.5 uncal um), Error = 0.8 uncal um, Median = 29726 (-130.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29714 (-130.4 uncal um), Max = 29730 (-130.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 23:05:21.228 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29723, posNoise = 7, negNoise = 9
17-03-17 23:05:21.228 -07 000000610 INF: Z Motor: After move to -0.131266, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:05:21.228 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 23:05:21.228 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:05:21.228 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:05:21.228 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:05:21.228 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:05:21.228 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:05:21.228 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:05:21.228 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:05:21.228 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:05:21.228 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 23:05:21.228 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:05:21.228 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:05:21.228 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:05:21.238 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:05:21.238 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:05:21.238 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 23:05:21.238 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:05:21.248 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 23:05:21.248 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:05:21.248 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 23:05:21.248 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 23:05:21.248 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 466 466 224 224 28851 150\n [Camera]
17-03-17 23:05:21.448 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:05:21.908 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 658
17-03-17 23:05:21.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 658
17-03-17 23:05:21.918 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:05:21.918 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 658
17-03-17 23:05:21.918 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 658
17-03-17 23:05:21.918 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:05:21.918 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:05:21.918 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2435004632, 0x0, 391868352) start.
17-03-17 23:05:21.918 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:05:21.918 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2470426896, 0x0, 418435064) start.
17-03-17 23:05:22.078 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:05:22.078 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 70. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1132, R2=1178, Total=2310. Warn if over 250 bubbles per interval.
17-03-17 23:05:22.108 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28851 851
17-03-17 23:05:22.258 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1001
17-03-17 23:05:22.298 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2470426896, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 23:05:22.298 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 23:05:22.298 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:05:22.298 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2435004632, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 23:05:22.308 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 23:05:22.308 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:05:22.308 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:05:22.308 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:05:22.308 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 23:05:22.308 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 23:05:22.478 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1225
17-03-17 23:05:22.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1225
17-03-17 23:05:22.478 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:05:22.478 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1225
17-03-17 23:05:22.478 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1225
17-03-17 23:05:22.488 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:05:22.488 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:05:22.488 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 23:05:22.488 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:05:22.488 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 23:05:22.668 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP 1418
17-03-17 23:05:22.668 -07 000000547 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:05:22.668 -07 000000610 INF: FPGA: 'CAMDBLSNAP 466 466 224 224 28851 150' command took 2 ms to send, 1418 ms to get response, and 1424 ms overall
17-03-17 23:05:22.678 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:05:22.678 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87890625, Z-Position -0.131270209500696. ------
17-03-17 23:05:22.678 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:05:22.678 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13792 mm
17-03-17 23:05:22.678 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:05:22.678 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:05:22.678 -07 000000448 INF: Z Motor: Entering MoveAbsStepped (DAC = 30129, sync = True, waitForSettling = False)
17-03-17 23:05:22.678 -07 000000448 INF: Z Motor: Moving to -0.137922 mm, started at -0.131270 mm, distance = -6.65 um
17-03-17 23:05:22.688 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 23:05:22.688 -07 000000502 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm
17-03-17 23:05:22.688 -07 000000448 INF: FPGA: Xmit ZDACW 30129\n [Z Motor]
17-03-17 23:05:22.688 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:05:22.688 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 23:05:22.698 -07 000000623 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:05:22.698 -07 000000448 INF: FPGA: 'ZDACW 30129' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:05:22.708 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:05:22.708 -07 000000482 INF: FPGA: Recv YRDPOS 132872
17-03-17 23:05:22.718 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:05:22.718 -07 000000502 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:05:22.718 -07 000000502 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:05:22.718 -07 000000502 INF: Y Motor: Moving 1350 steps-28
17-03-17 23:05:22.718 -07 000000448 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:05:22.718 -07 000000486 INF: FPGA: Recv ZDACR 30129
17-03-17 23:05:22.728 -07 000000448 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:05:22.728 -07 000000448 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-17 23:05:22.728 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:05:22.888 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 23:05:22.888 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 23:05:22.888 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:05:22.888 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 23:05:22.888 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 23:05:22.888 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:05:22.888 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:05:22.888 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 23:05:22.888 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:05:22.898 -07 000000541 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:05:22.898 -07 000000623 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 211 ms overall
17-03-17 23:05:22.898 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 23:05:23.098 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 23:05:23.098 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 23:05:23.138 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:05:23.148 -07 000000448 INF: FPGA: Recv YRDPOS 134582
17-03-17 23:05:23.148 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 23:05:23.148 -07 000000502 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:05:23.148 -07 000000502 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 23:05:23.148 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.844 mm, average velocity = 2.174 mm/sec
17-03-17 23:05:24.098 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:05:24.098 -07 000000475 INF: FPGA: Recv YRDPOS 134583
17-03-17 23:05:24.108 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:24.108 -07 000000502 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:05:24.128 -07 000000502 INF: Y Motor: After move to 65.722610, error = -0.008255, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:05:24.128 -07 000000502 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 23:05:24.128 -07 000000502 INF: Y Motor: Moved to 65.7144 after 1448 ms (table move)
17-03-17 23:05:24.138 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137922 mm (DAC = 30129)
17-03-17 23:05:24.138 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:24.138 -07 000000478 INF: FPGA: Recv ZSGSRD 30760
17-03-17 23:05:24.148 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:05:24.148 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:24.148 -07 000000541 INF: FPGA: Recv ZSGSRD 30760
17-03-17 23:05:24.158 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:24.158 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:24.158 -07 000000551 INF: FPGA: Recv ZSGSRD 30764
17-03-17 23:05:24.168 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:24.178 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:24.178 -07 000000486 INF: FPGA: Recv ZSGSRD 30766
17-03-17 23:05:24.188 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:05:24.188 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:24.188 -07 000000541 INF: FPGA: Recv ZSGSRD 30755
17-03-17 23:05:24.198 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:24.198 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:24.198 -07 000000551 INF: FPGA: Recv ZSGSRD 30757
17-03-17 23:05:24.208 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:24.208 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:24.208 -07 000000593 INF: FPGA: Recv ZSGSRD 30754
17-03-17 23:05:24.218 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:24.218 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:24.218 -07 000000502 INF: FPGA: Recv ZSGSRD 30759
17-03-17 23:05:24.228 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:24.228 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:24.228 -07 000000478 INF: FPGA: Recv ZSGSRD 30763
17-03-17 23:05:24.238 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:24.238 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:24.238 -07 000000429 INF: FPGA: Recv ZSGSRD 30764
17-03-17 23:05:24.248 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:24.248 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:05:24.248 -07 000000482 INF: FPGA: Recv ZPIEZORD 26695
17-03-17 23:05:24.258 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:24.258 -07 000000561 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.597 V. Piezo Error = -8.9 V.
17-03-17 23:05:24.258 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.9 um, Read 10 ADC samples: Avg = 30760 (-137.1 uncal um), Error = 0.8 uncal um, Median = 30760 (-137.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30754 (-137.1 uncal um), Max = 30766 (-137.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:05:24.258 -07 000000561 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30760, posNoise = 6, negNoise = 6
17-03-17 23:05:24.258 -07 000000561 INF: Z Motor: After move to -0.137922, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:05:24.258 -07 000000561 INF: Z Motor: Settle wait time = 1452 ms, measure time = 118 ms (allowed 150 ms), total time = 1570 ms
17-03-17 23:05:24.258 -07 000000561 INF: Z Motor: Waiting extra 32 ms after reading position to reach expected total of 150 ms
17-03-17 23:05:24.298 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1615 ms
17-03-17 23:05:24.298 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:05:24.298 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:05:24.298 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:05:24.298 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:05:24.298 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:05:24.298 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:05:24.298 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:05:24.298 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:05:24.298 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:05:24.308 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:05:24.308 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:05:24.318 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 23:05:24.318 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 23:05:24.318 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:05:24.368 -07 000000415 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:05:24.488 -07 000000409 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 71, FrontChillerTemperature: 4.02213,
17-03-17 23:05:24.568 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:05:24.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:05:24.568 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:05:24.568 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2415923248, 0x0, 559484976) start.
17-03-17 23:05:24.608 -07 000000541 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:05:24.608 -07 000000486 INF: FPGA: Recv CAMSNAP
17-03-17 23:05:24.608 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 286 ms overall
17-03-17 23:05:24.688 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2415923248, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 23:05:24.698 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:05:24.698 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:05:24.698 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 23:05:24.708 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:05:24.708 -07 000000623 INF: Autofocus start
17-03-17 23:05:24.708 -07 000000623 INF: MeasureProfile start
17-03-17 23:05:24.708 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:05:24.718 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:05:24.718 -07 000000627 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:05:24.718 -07 000000623 INF: MeasureProfile done
17-03-17 23:05:24.718 -07 000000623 INF: X=-15  Z correction [um]=-0.07642026
17-03-17 23:05:24.718 -07 000000623 INF: Autofocus finished
17-03-17 23:05:24.918 -07 000000448 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:05:24.918 -07 000000627 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:05:24.918 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71435546875, Z-position -0.137932117491702. ----------
17-03-17 23:05:24.918 -07 000000610 INF: Cycle	71	Tile	8	Exposure Settings		A	466	G	224	T	224	C	466
17-03-17 23:05:24.928 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28625, sync = True, waitForSettling = True)
17-03-17 23:05:24.928 -07 000000610 INF: Z Motor: Moving to -0.131037 mm, started at -0.137932 mm, distance = 6.90 um
17-03-17 23:05:24.928 -07 000000610 INF: FPGA: Xmit ZDACW 28625\n [Z Motor]
17-03-17 23:05:24.928 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 23:05:24.938 -07 000000610 INF: FPGA: 'ZDACW 28625' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:24.938 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:05:24.938 -07 000000541 INF: FPGA: Recv ZDACR 28625
17-03-17 23:05:24.948 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:24.948 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:05:25.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:25.098 -07 000000547 INF: FPGA: Recv ZSGSRD 29688
17-03-17 23:05:25.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:25.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:25.108 -07 000000502 INF: FPGA: Recv ZSGSRD 29689
17-03-17 23:05:25.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:25.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:25.118 -07 000000501 INF: FPGA: Recv ZSGSRD 29685
17-03-17 23:05:25.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:25.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:25.128 -07 000000482 INF: FPGA: Recv ZSGSRD 29687
17-03-17 23:05:25.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:25.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:25.138 -07 000000409 INF: FPGA: Recv ZSGSRD 29687
17-03-17 23:05:25.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:25.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:25.148 -07 000000547 INF: FPGA: Recv ZSGSRD 29685
17-03-17 23:05:25.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:25.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:25.158 -07 000000627 INF: FPGA: Recv ZSGSRD 29685
17-03-17 23:05:25.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:25.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:25.168 -07 000000501 INF: FPGA: Recv ZSGSRD 29692
17-03-17 23:05:25.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:25.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:25.178 -07 000000618 INF: FPGA: Recv ZSGSRD 29689
17-03-17 23:05:25.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:25.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:25.188 -07 000000576 INF: FPGA: Recv ZSGSRD 29688
17-03-17 23:05:25.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:25.198 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:05:25.198 -07 000000482 INF: FPGA: Recv ZPIEZORD 25264
17-03-17 23:05:25.208 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:25.208 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.368 V. Piezo Error = -9.7 V.
17-03-17 23:05:25.208 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.0 um, Read 10 ADC samples: Avg = 29688 (-130.3 uncal um), Error = 0.8 uncal um, Median = 29688 (-130.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29685 (-130.2 uncal um), Max = 29692 (-130.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 23:05:25.208 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29688, posNoise = 4, negNoise = 3
17-03-17 23:05:25.208 -07 000000610 INF: Z Motor: After move to -0.131037, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:05:25.208 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 23:05:25.208 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:05:25.208 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:05:25.208 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:05:25.208 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:05:25.208 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:05:25.208 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:05:25.208 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:05:25.208 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:05:25.208 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:05:25.208 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:05:25.208 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:05:25.208 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:05:25.208 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:05:25.208 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:05:25.218 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:05:25.218 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:05:25.218 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 23:05:25.218 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 23:05:25.218 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 23:05:25.218 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 23:05:25.228 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 466 466 224 224 28802 150\n [Camera]
17-03-17 23:05:25.428 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:05:25.888 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 658
17-03-17 23:05:25.898 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 658
17-03-17 23:05:25.898 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:05:25.898 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 658
17-03-17 23:05:25.898 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 658
17-03-17 23:05:25.898 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:05:25.898 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:05:25.898 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 23:05:25.898 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:05:25.898 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2602438304, 0x0, 391868352) start.
17-03-17 23:05:26.088 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28802 851
17-03-17 23:05:26.238 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1001
17-03-17 23:05:26.278 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2602438304, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 23:05:26.278 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 23:05:26.278 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:05:26.278 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 23:05:26.278 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 23:05:26.278 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:05:26.278 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:05:26.278 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 23:05:26.278 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:05:26.288 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 23:05:26.458 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1225
17-03-17 23:05:26.458 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1225
17-03-17 23:05:26.468 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:05:26.468 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1225
17-03-17 23:05:26.468 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1225
17-03-17 23:05:26.468 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:05:26.468 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:05:26.468 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-17 23:05:26.468 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:05:26.468 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 23:05:26.648 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP 1418
17-03-17 23:05:26.648 -07 000000482 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:05:26.648 -07 000000610 INF: FPGA: 'CAMDBLSNAP 466 466 224 224 28802 150' command took 2 ms to send, 1419 ms to get response, and 1428 ms overall
17-03-17 23:05:26.658 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:05:26.658 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71435546875, Z-Position -0.131045362075734. ------
17-03-17 23:05:26.658 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:05:26.658 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13738 mm
17-03-17 23:05:26.658 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:05:26.658 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:05:26.658 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 23:05:26.658 -07 000000618 INF: Y Motor: Moving to 66.5526 mm, started at 65.7144 mm, delta = 0.8382 mm
17-03-17 23:05:26.658 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 30011, sync = True, waitForSettling = False)
17-03-17 23:05:26.658 -07 000000486 INF: Z Motor: Moving to -0.137382 mm, started at -0.131045 mm, distance = -6.34 um
17-03-17 23:05:26.668 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:05:26.668 -07 000000486 INF: FPGA: Xmit ZDACW 30011\n [Z Motor]
17-03-17 23:05:26.668 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 23:05:26.678 -07 000000486 INF: FPGA: 'ZDACW 30011' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 23:05:26.678 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:05:26.678 -07 000000502 INF: FPGA: Recv YRDPOS 134583
17-03-17 23:05:26.688 -07 000000623 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:05:26.688 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 23:05:26.688 -07 000000618 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:05:26.688 -07 000000618 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:05:26.688 -07 000000618 INF: Y Motor: Moving 1341 steps-18
17-03-17 23:05:26.698 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:05:26.698 -07 000000448 INF: FPGA: Recv ZDACR 30011
17-03-17 23:05:26.708 -07 000000486 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:05:26.708 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:05:26.708 -07 000000486 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 23:05:26.858 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 23:05:26.858 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 23:05:26.858 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 23:05:26.858 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:05:26.858 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 23:05:26.858 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:05:26.858 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:05:26.858 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 23:05:26.858 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:05:26.868 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 23:05:26.888 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:05:26.888 -07 000000623 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 23:05:27.038 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:05:27.038 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 70. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1132, R2=1178, Total=2310. Warn if over 250 bubbles per interval.
17-03-17 23:05:27.078 -07 000000623 INF: FPGA: Recv YMVTILE
17-03-17 23:05:27.078 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 23:05:27.118 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:05:27.128 -07 000000415 INF: FPGA: Recv YRDPOS 136272
17-03-17 23:05:27.128 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 23:05:27.128 -07 000000618 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:05:27.128 -07 000000618 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 23:05:27.128 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.111 mm/sec
17-03-17 23:05:28.078 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:05:28.078 -07 000000429 INF: FPGA: Recv YRDPOS 136272
17-03-17 23:05:28.088 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:05:28.088 -07 000000618 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:05:28.108 -07 000000618 INF: Y Motor: After move to 66.552605, error = -0.013542, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:05:28.108 -07 000000618 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:05:28.108 -07 000000618 INF: Y Motor: Moved to 66.5391 after 1449 ms (table move)
17-03-17 23:05:28.118 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137382 mm (DAC = 30011)
17-03-17 23:05:28.118 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:28.118 -07 000000478 INF: FPGA: Recv ZSGSRD 30674
17-03-17 23:05:28.128 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:28.128 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:28.128 -07 000000482 INF: FPGA: Recv ZSGSRD 30683
17-03-17 23:05:28.138 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:28.138 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:28.138 -07 000000618 INF: FPGA: Recv ZSGSRD 30678
17-03-17 23:05:28.148 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:28.148 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:28.148 -07 000000462 INF: FPGA: Recv ZSGSRD 30679
17-03-17 23:05:28.158 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:28.158 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:28.158 -07 000000409 INF: FPGA: Recv ZSGSRD 30674
17-03-17 23:05:28.168 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:28.168 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:28.168 -07 000000429 INF: FPGA: Recv ZSGSRD 30678
17-03-17 23:05:28.178 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:28.178 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:28.178 -07 000000551 INF: FPGA: Recv ZSGSRD 30671
17-03-17 23:05:28.188 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:28.188 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:28.188 -07 000000593 INF: FPGA: Recv ZSGSRD 30669
17-03-17 23:05:28.198 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:28.198 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:28.198 -07 000000448 INF: FPGA: Recv ZSGSRD 30678
17-03-17 23:05:28.208 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:28.208 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:28.208 -07 000000541 INF: FPGA: Recv ZSGSRD 30680
17-03-17 23:05:28.218 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:28.218 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:05:28.218 -07 000000502 INF: FPGA: Recv ZPIEZORD 26609
17-03-17 23:05:28.228 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:28.228 -07 000000382 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.579 V. Piezo Error = -9.0 V.
17-03-17 23:05:28.228 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.4 um, Read 10 ADC samples: Avg = 30676 (-136.6 uncal um), Error = 0.8 uncal um, Median = 30678 (-136.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30669 (-136.6 uncal um), Max = 30683 (-136.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 23:05:28.228 -07 000000382 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30676, posNoise = 7, negNoise = 7
17-03-17 23:05:28.228 -07 000000382 INF: Z Motor: After move to -0.137382, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:05:28.228 -07 000000382 INF: Z Motor: Settle wait time = 1452 ms, measure time = 110 ms (allowed 150 ms), total time = 1562 ms
17-03-17 23:05:28.228 -07 000000382 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 23:05:28.268 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-17 23:05:28.268 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:05:28.268 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:05:28.268 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:05:28.268 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:05:28.268 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:05:28.268 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:05:28.268 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:05:28.268 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 23:05:28.268 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:05:28.278 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:05:28.278 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:05:28.288 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 23:05:28.288 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 23:05:28.288 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:05:28.338 -07 000000415 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:05:28.538 -07 000000623 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:05:28.538 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:05:28.538 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:05:28.538 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2510254464, 0x0, 559484976) start.
17-03-17 23:05:28.578 -07 000000462 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:05:28.578 -07 000000448 INF: FPGA: Recv CAMSNAP
17-03-17 23:05:28.578 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 23:05:28.658 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2510254464, 0x0, 559484976) end. Duration was 121 ms.
17-03-17 23:05:28.658 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:05:28.658 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 23:05:28.658 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 124 ms.
17-03-17 23:05:28.678 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:05:28.678 -07 000000409 INF: Autofocus start
17-03-17 23:05:28.678 -07 000000409 INF: MeasureProfile start
17-03-17 23:05:28.678 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:05:28.688 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:05:28.688 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:05:28.688 -07 000000409 INF: MeasureProfile done
17-03-17 23:05:28.688 -07 000000409 INF: X=0  Z correction [um]=-0.02394831
17-03-17 23:05:28.688 -07 000000409 INF: Autofocus finished
17-03-17 23:05:28.888 -07 000000415 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:05:28.888 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:05:28.888 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5390625, Z-position -0.137392483671794. ----------
17-03-17 23:05:28.898 -07 000000610 INF: Cycle	71	Tile	9	Exposure Settings		A	466	G	224	T	224	C	466
17-03-17 23:05:28.898 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28518, sync = True, waitForSettling = True)
17-03-17 23:05:28.898 -07 000000610 INF: Z Motor: Moving to -0.130547 mm, started at -0.137392 mm, distance = 6.85 um
17-03-17 23:05:28.898 -07 000000610 INF: FPGA: Xmit ZDACW 28518\n [Z Motor]
17-03-17 23:05:28.898 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 23:05:28.908 -07 000000610 INF: FPGA: 'ZDACW 28518' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:05:28.908 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:05:28.908 -07 000000618 INF: FPGA: Recv ZDACR 28518
17-03-17 23:05:28.918 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:28.918 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:05:29.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:29.068 -07 000000478 INF: FPGA: Recv ZSGSRD 29614
17-03-17 23:05:29.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:05:29.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:29.078 -07 000000429 INF: FPGA: Recv ZSGSRD 29615
17-03-17 23:05:29.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:29.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:29.088 -07 000000561 INF: FPGA: Recv ZSGSRD 29609
17-03-17 23:05:29.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:29.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:29.098 -07 000000547 INF: FPGA: Recv ZSGSRD 29609
17-03-17 23:05:29.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:29.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:29.108 -07 000000618 INF: FPGA: Recv ZSGSRD 29615
17-03-17 23:05:29.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:29.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:29.118 -07 000000576 INF: FPGA: Recv ZSGSRD 29612
17-03-17 23:05:29.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:29.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:29.128 -07 000000415 INF: FPGA: Recv ZSGSRD 29610
17-03-17 23:05:29.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:29.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:29.138 -07 000000541 INF: FPGA: Recv ZSGSRD 29613
17-03-17 23:05:29.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:29.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:29.148 -07 000000409 INF: FPGA: Recv ZSGSRD 29612
17-03-17 23:05:29.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:29.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:29.158 -07 000000618 INF: FPGA: Recv ZSGSRD 29611
17-03-17 23:05:29.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:29.168 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:05:29.168 -07 000000382 INF: FPGA: Recv ZPIEZORD 25212
17-03-17 23:05:29.178 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:29.178 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.352 V. Piezo Error = -9.7 V.
17-03-17 23:05:29.178 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.5 um, Read 10 ADC samples: Avg = 29612 (-129.8 uncal um), Error = 0.8 uncal um, Median = 29612 (-129.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29609 (-129.8 uncal um), Max = 29615 (-129.8 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 23:05:29.178 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29612, posNoise = 3, negNoise = 3
17-03-17 23:05:29.178 -07 000000610 INF: Z Motor: After move to -0.130547, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:05:29.178 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 23:05:29.178 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:05:29.178 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:05:29.178 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:05:29.178 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:05:29.178 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:05:29.178 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:05:29.178 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:05:29.178 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:05:29.178 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:05:29.178 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:05:29.178 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 23:05:29.178 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:05:29.188 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 23:05:29.188 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:05:29.188 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:05:29.188 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:05:29.188 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 23:05:29.188 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 23:05:29.198 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 23:05:29.198 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 23:05:29.198 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 466 466 224 224 28695 150\n [Camera]
17-03-17 23:05:29.398 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:05:29.858 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 71, FrontChillerTemperature: 4.007176,
17-03-17 23:05:29.868 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 658
17-03-17 23:05:29.868 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 658
17-03-17 23:05:29.868 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:05:29.868 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 658
17-03-17 23:05:29.868 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:05:29.868 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-17 23:05:29.868 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 658
17-03-17 23:05:29.868 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:05:29.868 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:05:29.868 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 23:05:30.058 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28695 851
17-03-17 23:05:30.208 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1001
17-03-17 23:05:30.248 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 23:05:30.248 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 23:05:30.248 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 23:05:30.248 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:05:30.248 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 23:05:30.248 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:05:30.248 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 23:05:30.248 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 23:05:30.248 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 23:05:30.258 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 23:05:30.428 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1225
17-03-17 23:05:30.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1225
17-03-17 23:05:30.428 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:05:30.428 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:05:30.428 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 23:05:30.438 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1225
17-03-17 23:05:30.438 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1225
17-03-17 23:05:30.438 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:05:30.438 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:05:30.438 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 23:05:30.618 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1418
17-03-17 23:05:30.618 -07 000000547 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:05:30.618 -07 000000610 INF: FPGA: 'CAMDBLSNAP 466 466 224 224 28695 150' command took 2 ms to send, 1417 ms to get response, and 1424 ms overall
17-03-17 23:05:30.618 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:05:30.618 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5390625, Z-Position -0.13055712195296. ------
17-03-17 23:05:30.628 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:05:30.628 -07 000000448 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13730 mm
17-03-17 23:05:30.628 -07 000000448 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:05:30.628 -07 000000482 INF: Z Motor: Entering MoveAbsStepped (DAC = 29993, sync = True, waitForSettling = False)
17-03-17 23:05:30.628 -07 000000482 INF: Z Motor: Moving to -0.137299 mm, started at -0.130557 mm, distance = -6.74 um
17-03-17 23:05:30.628 -07 000000409 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 23:05:30.628 -07 000000409 INF: Y Motor: Moving to 67.3826 mm, started at 66.5391 mm, delta = 0.8435 mm
17-03-17 23:05:30.638 -07 000000482 INF: FPGA: Xmit ZDACW 29993\n [Z Motor]
17-03-17 23:05:30.638 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:05:30.638 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 6 ms overall
17-03-17 23:05:30.638 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 23:05:30.648 -07 000000482 INF: FPGA: 'ZDACW 29993' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 23:05:30.648 -07 000000486 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:05:30.658 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:05:30.658 -07 000000415 INF: FPGA: Recv YRDPOS 136273
17-03-17 23:05:30.668 -07 000000482 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:05:30.668 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-17 23:05:30.668 -07 000000409 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:05:30.668 -07 000000429 INF: FPGA: Recv ZDACR 29993
17-03-17 23:05:30.668 -07 000000409 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:05:30.668 -07 000000409 INF: Y Motor: Moving 1349 steps-28
17-03-17 23:05:30.678 -07 000000482 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:05:30.678 -07 000000409 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:05:30.678 -07 000000482 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 23:05:30.828 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 23:05:30.828 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 23:05:30.828 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:05:30.828 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 23:05:30.828 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 23:05:30.828 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:05:30.828 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:05:30.838 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-17 23:05:30.838 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 23:05:30.838 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 23:05:30.848 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:05:30.848 -07 000000486 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 211 ms overall
17-03-17 23:05:31.048 -07 000000547 INF: FPGA: Recv YMVTILE
17-03-17 23:05:31.048 -07 000000409 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 383 ms overall
17-03-17 23:05:31.088 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:05:31.098 -07 000000541 INF: FPGA: Recv YRDPOS 137978
17-03-17 23:05:31.098 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 23:05:31.098 -07 000000409 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:05:31.098 -07 000000409 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-17 23:05:31.098 -07 000000409 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 383 ms, distance = 0.844 mm, average velocity = 2.202 mm/sec
17-03-17 23:05:32.038 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:05:32.038 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 70. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1132, R2=1178, Total=2310. Warn if over 250 bubbles per interval.
17-03-17 23:05:32.048 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:05:32.048 -07 000000576 INF: FPGA: Recv YRDPOS 137978
17-03-17 23:05:32.058 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:32.058 -07 000000409 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:05:32.078 -07 000000409 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:05:32.078 -07 000000409 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:05:32.078 -07 000000409 INF: Y Motor: Moved to 67.3721 after 1448 ms (table move)
17-03-17 23:05:32.078 -07 000000448 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137299 mm (DAC = 29993)
17-03-17 23:05:32.078 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:32.088 -07 000000541 INF: FPGA: Recv ZSGSRD 30667
17-03-17 23:05:32.098 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:05:32.098 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:32.098 -07 000000618 INF: FPGA: Recv ZSGSRD 30664
17-03-17 23:05:32.108 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:32.108 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:32.108 -07 000000478 INF: FPGA: Recv ZSGSRD 30662
17-03-17 23:05:32.118 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:32.118 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:32.118 -07 000000561 INF: FPGA: Recv ZSGSRD 30664
17-03-17 23:05:32.128 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:32.128 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:32.128 -07 000000409 INF: FPGA: Recv ZSGSRD 30669
17-03-17 23:05:32.138 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:32.138 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:32.138 -07 000000415 INF: FPGA: Recv ZSGSRD 30665
17-03-17 23:05:32.148 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:32.148 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:32.148 -07 000000593 INF: FPGA: Recv ZSGSRD 30662
17-03-17 23:05:32.158 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:32.158 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:32.158 -07 000000462 INF: FPGA: Recv ZSGSRD 30654
17-03-17 23:05:32.168 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:32.168 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:32.168 -07 000000627 INF: FPGA: Recv ZSGSRD 30667
17-03-17 23:05:32.178 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:32.178 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:32.178 -07 000000382 INF: FPGA: Recv ZSGSRD 30663
17-03-17 23:05:32.188 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:32.188 -07 000000448 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:05:32.188 -07 000000502 INF: FPGA: Recv ZPIEZORD 26579
17-03-17 23:05:32.198 -07 000000448 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:32.198 -07 000000448 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.577 V. Piezo Error = -9.0 V.
17-03-17 23:05:32.198 -07 000000448 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.3 um, Read 10 ADC samples: Avg = 30664 (-136.5 uncal um), Error = 0.8 uncal um, Median = 30664 (-136.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30654 (-136.5 uncal um), Max = 30669 (-136.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 23:05:32.198 -07 000000448 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30664, posNoise = 5, negNoise = 10
17-03-17 23:05:32.198 -07 000000448 INF: Z Motor: After move to -0.137299, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:05:32.198 -07 000000448 INF: Z Motor: Settle wait time = 1451 ms, measure time = 113 ms (allowed 150 ms), total time = 1564 ms
17-03-17 23:05:32.198 -07 000000448 INF: Z Motor: Waiting extra 37 ms after reading position to reach expected total of 150 ms
17-03-17 23:05:32.238 -07 000000448 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-17 23:05:32.238 -07 000000448 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:05:32.238 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:05:32.238 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:05:32.238 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:05:32.238 -07 000000409 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:05:32.238 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:05:32.238 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:05:32.238 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:05:32.238 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:05:32.248 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 23:05:32.248 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:05:32.258 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 23:05:32.258 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 23:05:32.258 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:05:32.308 -07 000000415 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:05:32.508 -07 000000551 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:05:32.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:05:32.508 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:05:32.508 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2539065104, 0x0, 559484976) start.
17-03-17 23:05:32.548 -07 000000561 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:05:32.548 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-17 23:05:32.548 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 23:05:32.628 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2539065104, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 23:05:32.638 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:05:32.638 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 23:05:32.638 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 23:05:32.648 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:05:32.648 -07 000000576 INF: Autofocus start
17-03-17 23:05:32.648 -07 000000576 INF: MeasureProfile start
17-03-17 23:05:32.648 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:05:32.658 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:05:32.658 -07 000000486 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:05:32.658 -07 000000576 INF: MeasureProfile done
17-03-17 23:05:32.658 -07 000000576 INF: X=27  Z correction [um]=0.1059322
17-03-17 23:05:32.658 -07 000000576 INF: Autofocus finished
17-03-17 23:05:32.858 -07 000000551 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:05:32.858 -07 000000486 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:05:32.858 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.137315393126093. ----------
17-03-17 23:05:32.858 -07 000000610 INF: Cycle	71	Tile	10	Exposure Settings		A	466	G	224	T	224	C	466
17-03-17 23:05:32.858 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28529, sync = True, waitForSettling = True)
17-03-17 23:05:32.868 -07 000000610 INF: Z Motor: Moving to -0.130597 mm, started at -0.137315 mm, distance = 6.72 um
17-03-17 23:05:32.868 -07 000000610 INF: FPGA: Xmit ZDACW 28529\n [Z Motor]
17-03-17 23:05:32.868 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 23:05:32.878 -07 000000610 INF: FPGA: 'ZDACW 28529' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:32.878 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:05:32.878 -07 000000551 INF: FPGA: Recv ZDACR 28529
17-03-17 23:05:32.888 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:32.888 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:05:33.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:33.038 -07 000000478 INF: FPGA: Recv ZSGSRD 29618
17-03-17 23:05:33.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:05:33.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:33.048 -07 000000623 INF: FPGA: Recv ZSGSRD 29625
17-03-17 23:05:33.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:05:33.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:33.058 -07 000000486 INF: FPGA: Recv ZSGSRD 29622
17-03-17 23:05:33.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:33.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:33.068 -07 000000576 INF: FPGA: Recv ZSGSRD 29617
17-03-17 23:05:33.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:33.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:33.078 -07 000000547 INF: FPGA: Recv ZSGSRD 29618
17-03-17 23:05:33.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:33.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:33.088 -07 000000618 INF: FPGA: Recv ZSGSRD 29621
17-03-17 23:05:33.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:33.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:33.098 -07 000000623 INF: FPGA: Recv ZSGSRD 29622
17-03-17 23:05:33.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:33.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:33.108 -07 000000486 INF: FPGA: Recv ZSGSRD 29620
17-03-17 23:05:33.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:33.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:33.118 -07 000000409 INF: FPGA: Recv ZSGSRD 29621
17-03-17 23:05:33.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:33.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:33.128 -07 000000486 INF: FPGA: Recv ZSGSRD 29624
17-03-17 23:05:33.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:33.138 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:05:33.138 -07 000000482 INF: FPGA: Recv ZPIEZORD 25234
17-03-17 23:05:33.148 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:33.148 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.353 V. Piezo Error = -9.6 V.
17-03-17 23:05:33.148 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.6 um, Read 10 ADC samples: Avg = 29621 (-129.8 uncal um), Error = 0.8 uncal um, Median = 29621 (-129.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29617 (-129.8 uncal um), Max = 29625 (-129.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:05:33.148 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29621, posNoise = 4, negNoise = 4
17-03-17 23:05:33.148 -07 000000610 INF: Z Motor: After move to -0.130597, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:05:33.148 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 23:05:33.148 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:05:33.148 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:05:33.148 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:05:33.148 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:05:33.148 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:05:33.148 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:05:33.148 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:05:33.148 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:05:33.148 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 23:05:33.148 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:05:33.148 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:05:33.148 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:05:33.148 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:05:33.148 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:05:33.158 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 23:05:33.158 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:05:33.158 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 23:05:33.158 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 23:05:33.168 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 23:05:33.168 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 23:05:33.168 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 466 466 224 224 28705 150\n [Camera]
17-03-17 23:05:33.368 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:05:33.838 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 658
17-03-17 23:05:33.838 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 658
17-03-17 23:05:33.838 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:05:33.838 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:05:33.838 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 23:05:33.838 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 658
17-03-17 23:05:33.838 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 658
17-03-17 23:05:33.838 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:05:33.838 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:05:33.838 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 23:05:34.028 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28705 853
17-03-17 23:05:34.178 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1001
17-03-17 23:05:34.218 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 23:05:34.218 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 23:05:34.218 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:05:34.218 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 23:05:34.218 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 23:05:34.218 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:05:34.218 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:05:34.228 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:05:34.228 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 23:05:34.228 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 23:05:34.398 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1225
17-03-17 23:05:34.398 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1225
17-03-17 23:05:34.398 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:05:34.398 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:05:34.398 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 23:05:34.398 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1225
17-03-17 23:05:34.398 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1225
17-03-17 23:05:34.398 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:05:34.398 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:05:34.408 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 23:05:34.588 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP 1417
17-03-17 23:05:34.588 -07 000000448 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:05:34.588 -07 000000610 INF: FPGA: 'CAMDBLSNAP 466 466 224 224 28705 150' command took 2 ms to send, 1418 ms to get response, and 1424 ms overall
17-03-17 23:05:34.598 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:05:34.598 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.3720703125, Z-Position -0.130614939862236. ------
17-03-17 23:05:34.598 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:05:34.598 -07 000000482 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13705 mm
17-03-17 23:05:34.598 -07 000000482 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:05:34.598 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 23:05:34.598 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 29938, sync = True, waitForSettling = False)
17-03-17 23:05:34.598 -07 000000501 INF: Z Motor: Moving to -0.137047 mm, started at -0.130615 mm, distance = -6.43 um
17-03-17 23:05:34.598 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:05:34.598 -07 000000561 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm
17-03-17 23:05:34.608 -07 000000501 INF: FPGA: Xmit ZDACW 29938\n [Z Motor]
17-03-17 23:05:34.608 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:05:34.608 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 23:05:34.618 -07 000000501 INF: FPGA: 'ZDACW 29938' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 23:05:34.618 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:05:34.618 -07 000000576 INF: FPGA: Recv YRDPOS 137978
17-03-17 23:05:34.628 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:05:34.628 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 23:05:34.628 -07 000000561 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:05:34.628 -07 000000561 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:05:34.628 -07 000000561 INF: Y Motor: Moving 1345 steps-22
17-03-17 23:05:34.638 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:05:34.638 -07 000000541 INF: FPGA: Recv ZDACR 29938
17-03-17 23:05:34.648 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:05:34.648 -07 000000501 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-17 23:05:34.648 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:05:34.788 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 23:05:34.788 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 23:05:34.788 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:05:34.788 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 23:05:34.788 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 23:05:34.788 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:05:34.788 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:05:34.798 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 23:05:34.798 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 23:05:34.798 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 23:05:34.828 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:05:34.828 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 23:05:35.028 -07 000000475 INF: FPGA: Recv YMVTILE
17-03-17 23:05:35.028 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 2 ms to send, 371 ms to get response, and 400 ms overall
17-03-17 23:05:35.068 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:05:35.068 -07 000000551 INF: FPGA: Recv YRDPOS 139684
17-03-17 23:05:35.078 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:05:35.078 -07 000000561 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:05:35.078 -07 000000561 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 23:05:35.078 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 401 ms, distance = 0.841 mm, average velocity = 2.096 mm/sec
17-03-17 23:05:35.228 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 71, FrontChillerTemperature: 3.99219,
17-03-17 23:05:36.028 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:05:36.028 -07 000000415 INF: FPGA: Recv YRDPOS 139685
17-03-17 23:05:36.038 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:05:36.038 -07 000000561 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:05:36.058 -07 000000561 INF: Y Motor: After move to 68.212608, error = -0.007042, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:05:36.058 -07 000000561 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 23:05:36.058 -07 000000561 INF: Y Motor: Moved to 68.2056 after 1458 ms (table move)
17-03-17 23:05:36.058 -07 000000482 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137047 mm (DAC = 29938)
17-03-17 23:05:36.058 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:36.068 -07 000000429 INF: FPGA: Recv ZSGSRD 30625
17-03-17 23:05:36.068 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 23:05:36.068 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:36.068 -07 000000462 INF: FPGA: Recv ZSGSRD 30631
17-03-17 23:05:36.078 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:05:36.078 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:36.078 -07 000000551 INF: FPGA: Recv ZSGSRD 30629
17-03-17 23:05:36.088 -07 000000482 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:36.088 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:36.088 -07 000000547 INF: FPGA: Recv ZSGSRD 30614
17-03-17 23:05:36.098 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:36.098 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:36.098 -07 000000618 INF: FPGA: Recv ZSGSRD 30620
17-03-17 23:05:36.108 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:36.108 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:36.108 -07 000000576 INF: FPGA: Recv ZSGSRD 30623
17-03-17 23:05:36.118 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:36.118 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:36.118 -07 000000593 INF: FPGA: Recv ZSGSRD 30627
17-03-17 23:05:36.128 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:36.128 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:36.128 -07 000000415 INF: FPGA: Recv ZSGSRD 30629
17-03-17 23:05:36.138 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:36.138 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:36.138 -07 000000623 INF: FPGA: Recv ZSGSRD 30626
17-03-17 23:05:36.148 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:36.148 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:36.148 -07 000000462 INF: FPGA: Recv ZSGSRD 30626
17-03-17 23:05:36.158 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:36.158 -07 000000482 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:05:36.158 -07 000000561 INF: FPGA: Recv ZPIEZORD 26572
17-03-17 23:05:36.168 -07 000000482 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:36.168 -07 000000482 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.568 V. Piezo Error = -8.9 V.
17-03-17 23:05:36.168 -07 000000482 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.0 um, Read 10 ADC samples: Avg = 30625 (-136.3 uncal um), Error = 0.8 uncal um, Median = 30626 (-136.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30614 (-136.2 uncal um), Max = 30631 (-136.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 23:05:36.168 -07 000000482 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30625, posNoise = 6, negNoise = 11
17-03-17 23:05:36.168 -07 000000482 INF: Z Motor: After move to -0.137047, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:05:36.168 -07 000000482 INF: Z Motor: Settle wait time = 1461 ms, measure time = 102 ms (allowed 150 ms), total time = 1563 ms
17-03-17 23:05:36.168 -07 000000482 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 23:05:36.218 -07 000000482 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1615 ms
17-03-17 23:05:36.218 -07 000000482 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:05:36.218 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:05:36.218 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:05:36.218 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:05:36.218 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:05:36.218 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:05:36.218 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:05:36.218 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 23:05:36.218 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:05:36.228 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 23:05:36.228 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:05:36.238 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 23:05:36.238 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 23:05:36.238 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:05:36.288 -07 000000486 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:05:36.488 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:05:36.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:05:36.488 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:05:36.488 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2671610696, 0x0, 559484976) start.
17-03-17 23:05:36.528 -07 000000415 INF: FPGA: Recv @CAMSNAP 283
17-03-17 23:05:36.528 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 23:05:36.528 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 287 ms overall
17-03-17 23:05:36.618 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2671610696, 0x0, 559484976) end. Duration was 128 ms.
17-03-17 23:05:36.618 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:05:36.618 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 23:05:36.618 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 131 ms.
17-03-17 23:05:36.628 -07 000000478 INF: Autofocus start
17-03-17 23:05:36.628 -07 000000478 INF: MeasureProfile start
17-03-17 23:05:36.628 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:05:36.638 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:05:36.638 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 6 ms overall
17-03-17 23:05:36.638 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:05:36.638 -07 000000478 INF: MeasureProfile done
17-03-17 23:05:36.638 -07 000000478 INF: X=0  Z correction [um]=-0.02394831
17-03-17 23:05:36.638 -07 000000478 INF: Autofocus finished
17-03-17 23:05:36.838 -07 000000475 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:05:36.838 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 23:05:36.848 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20556640625, Z-position -0.137064848852564. ----------
17-03-17 23:05:36.848 -07 000000610 INF: Cycle	71	Tile	11	Exposure Settings		A	466	G	224	T	224	C	466
17-03-17 23:05:36.848 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28446, sync = True, waitForSettling = True)
17-03-17 23:05:36.848 -07 000000610 INF: Z Motor: Moving to -0.130217 mm, started at -0.137065 mm, distance = 6.85 um
17-03-17 23:05:36.848 -07 000000610 INF: FPGA: Xmit ZDACW 28446\n [Z Motor]
17-03-17 23:05:36.848 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 23:05:36.858 -07 000000610 INF: FPGA: 'ZDACW 28446' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:05:36.858 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:05:36.858 -07 000000623 INF: FPGA: Recv ZDACR 28446
17-03-17 23:05:36.868 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:36.868 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:05:37.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:37.018 -07 000000478 INF: FPGA: Recv ZSGSRD 29562
17-03-17 23:05:37.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:05:37.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:37.028 -07 000000623 INF: FPGA: Recv ZSGSRD 29561
17-03-17 23:05:37.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:37.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:37.038 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:05:37.038 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 70. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1132, R2=1178, Total=2310. Warn if over 250 bubbles per interval.
17-03-17 23:05:37.038 -07 000000475 INF: FPGA: Recv ZSGSRD 29556
17-03-17 23:05:37.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:37.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:37.048 -07 000000618 INF: FPGA: Recv ZSGSRD 29562
17-03-17 23:05:37.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:37.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:37.058 -07 000000462 INF: FPGA: Recv ZSGSRD 29557
17-03-17 23:05:37.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:37.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:37.068 -07 000000576 INF: FPGA: Recv ZSGSRD 29557
17-03-17 23:05:37.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:37.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:37.078 -07 000000382 INF: FPGA: Recv ZSGSRD 29562
17-03-17 23:05:37.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:37.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:37.088 -07 000000409 INF: FPGA: Recv ZSGSRD 29558
17-03-17 23:05:37.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:37.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:37.098 -07 000000502 INF: FPGA: Recv ZSGSRD 29565
17-03-17 23:05:37.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:37.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:37.108 -07 000000462 INF: FPGA: Recv ZSGSRD 29560
17-03-17 23:05:37.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:37.118 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:05:37.118 -07 000000478 INF: FPGA: Recv ZPIEZORD 25168
17-03-17 23:05:37.128 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:37.128 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.341 V. Piezo Error = -9.6 V.
17-03-17 23:05:37.128 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.2 um, Read 10 ADC samples: Avg = 29560 (-129.4 uncal um), Error = 0.8 uncal um, Median = 29560 (-129.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29556 (-129.4 uncal um), Max = 29565 (-129.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:05:37.128 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29560, posNoise = 5, negNoise = 4
17-03-17 23:05:37.128 -07 000000610 INF: Z Motor: After move to -0.130217, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:05:37.128 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 23:05:37.128 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:05:37.128 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:05:37.128 -07 000000409 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:05:37.128 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:05:37.128 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:05:37.128 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:05:37.128 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:05:37.128 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:05:37.128 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 23:05:37.128 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:05:37.128 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:05:37.128 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:05:37.138 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:05:37.138 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:05:37.138 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 23:05:37.138 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:05:37.138 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 23:05:37.138 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 23:05:37.148 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 23:05:37.148 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:05:37.148 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 466 466 224 224 28623 150\n [Camera]
17-03-17 23:05:37.348 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:05:37.808 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 658
17-03-17 23:05:37.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 658
17-03-17 23:05:37.808 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:05:37.818 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:05:37.818 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 23:05:37.818 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 658
17-03-17 23:05:37.818 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 658
17-03-17 23:05:37.818 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:05:37.818 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:05:37.818 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 23:05:38.008 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28623 851
17-03-17 23:05:38.158 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1001
17-03-17 23:05:38.198 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 23:05:38.198 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 23:05:38.198 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:05:38.198 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 23:05:38.198 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 23:05:38.198 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:05:38.198 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 23:05:38.198 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 23:05:38.208 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 23:05:38.208 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 23:05:38.378 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1225
17-03-17 23:05:38.378 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1225
17-03-17 23:05:38.378 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:05:38.378 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:05:38.378 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-17 23:05:38.378 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1225
17-03-17 23:05:38.378 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1225
17-03-17 23:05:38.378 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:05:38.518 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:05:38.518 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 23:05:38.568 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1418
17-03-17 23:05:38.568 -07 000000409 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:05:38.568 -07 000000610 INF: FPGA: 'CAMDBLSNAP 466 466 224 224 28623 150' command took 2 ms to send, 1417 ms to get response, and 1424 ms overall
17-03-17 23:05:38.568 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:05:38.568 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20556640625, Z-Position -0.130223062921589. ------
17-03-17 23:05:38.578 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:05:38.578 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13686 mm
17-03-17 23:05:38.578 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:05:38.578 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 23:05:38.578 -07 000000576 INF: Y Motor: Moving to 69.0426 mm, started at 68.2056 mm, delta = 0.8370 mm
17-03-17 23:05:38.578 -07 000000448 INF: Z Motor: Entering MoveAbsStepped (DAC = 29898, sync = True, waitForSettling = False)
17-03-17 23:05:38.578 -07 000000448 INF: Z Motor: Moving to -0.136864 mm, started at -0.130223 mm, distance = -6.64 um
17-03-17 23:05:38.578 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:05:38.588 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:05:38.588 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:05:38.588 -07 000000547 INF: FPGA: Recv YRDPOS 139685
17-03-17 23:05:38.598 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 23:05:38.598 -07 000000576 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:05:38.598 -07 000000576 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:05:38.598 -07 000000576 INF: Y Motor: Moving 1339 steps-15
17-03-17 23:05:38.598 -07 000000448 INF: FPGA: Xmit ZDACW 29898\n [Z Motor]
17-03-17 23:05:38.598 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 23:05:38.608 -07 000000593 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:05:38.608 -07 000000448 INF: FPGA: 'ZDACW 29898' command took 1 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 23:05:38.618 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:05:38.628 -07 000000448 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:05:38.628 -07 000000547 INF: FPGA: Recv ZDACR 29898
17-03-17 23:05:38.638 -07 000000448 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:05:38.638 -07 000000448 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-17 23:05:38.788 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 405 ms.
17-03-17 23:05:38.788 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 23:05:38.788 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:05:38.788 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 23:05:38.788 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 23:05:38.808 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:05:38.808 -07 000000593 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 23:05:38.908 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 23:05:38.908 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 23:05:38.908 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:05:38.918 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:05:38.918 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 538 ms.
17-03-17 23:05:38.988 -07 000000623 INF: FPGA: Recv YMVTILE
17-03-17 23:05:38.998 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 2 ms to send, 369 ms to get response, and 399 ms overall
17-03-17 23:05:39.038 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:05:39.038 -07 000000502 INF: FPGA: Recv YRDPOS 141368
17-03-17 23:05:39.048 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:39.048 -07 000000576 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:05:39.048 -07 000000576 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 23:05:39.048 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.837 mm, average velocity = 2.098 mm/sec
17-03-17 23:05:39.998 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:05:39.998 -07 000000618 INF: FPGA: Recv YRDPOS 141368
17-03-17 23:05:40.008 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:05:40.008 -07 000000576 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:05:40.028 -07 000000576 INF: Y Motor: After move to 69.042610, error = -0.015266, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:05:40.028 -07 000000576 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:05:40.028 -07 000000576 INF: Y Motor: Moved to 69.0273 after 1450 ms (table move)
17-03-17 23:05:40.028 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136864 mm (DAC = 29898)
17-03-17 23:05:40.028 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:40.038 -07 000000541 INF: FPGA: Recv ZSGSRD 30600
17-03-17 23:05:40.038 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 3 ms to get response, and 4 ms overall
17-03-17 23:05:40.038 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:40.038 -07 000000576 INF: FPGA: Recv ZSGSRD 30595
17-03-17 23:05:40.048 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:05:40.048 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:40.048 -07 000000623 INF: FPGA: Recv ZSGSRD 30594
17-03-17 23:05:40.058 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:40.058 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:40.058 -07 000000429 INF: FPGA: Recv ZSGSRD 30591
17-03-17 23:05:40.068 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:40.068 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:40.068 -07 000000475 INF: FPGA: Recv ZSGSRD 30591
17-03-17 23:05:40.078 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:40.078 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:40.078 -07 000000623 INF: FPGA: Recv ZSGSRD 30593
17-03-17 23:05:40.088 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:40.088 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:40.088 -07 000000482 INF: FPGA: Recv ZSGSRD 30596
17-03-17 23:05:40.098 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:40.098 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:40.098 -07 000000486 INF: FPGA: Recv ZSGSRD 30596
17-03-17 23:05:40.108 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:40.108 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:40.108 -07 000000429 INF: FPGA: Recv ZSGSRD 30594
17-03-17 23:05:40.118 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:40.118 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:40.118 -07 000000486 INF: FPGA: Recv ZSGSRD 30599
17-03-17 23:05:40.128 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:40.128 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:05:40.128 -07 000000627 INF: FPGA: Recv ZPIEZORD 26554
17-03-17 23:05:40.138 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:40.138 -07 000000501 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.562 V. Piezo Error = -8.9 V.
17-03-17 23:05:40.138 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.9 um, Read 10 ADC samples: Avg = 30595 (-136.1 uncal um), Error = 0.8 uncal um, Median = 30594 (-136.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30591 (-136.1 uncal um), Max = 30600 (-136.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:05:40.138 -07 000000501 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30595, posNoise = 5, negNoise = 4
17-03-17 23:05:40.138 -07 000000501 INF: Z Motor: After move to -0.136864, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:05:40.138 -07 000000501 INF: Z Motor: Settle wait time = 1453 ms, measure time = 101 ms (allowed 150 ms), total time = 1554 ms
17-03-17 23:05:40.138 -07 000000501 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 23:05:40.188 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1606 ms
17-03-17 23:05:40.188 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:05:40.188 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:05:40.188 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:05:40.188 -07 000000409 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:05:40.188 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:05:40.188 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:05:40.188 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:05:40.188 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 23:05:40.188 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:05:40.198 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:05:40.198 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:05:40.198 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 23:05:40.198 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 23:05:40.208 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:05:40.248 -07 000000409 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:05:40.448 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:05:40.448 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:05:40.448 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:05:40.448 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) start.
17-03-17 23:05:40.488 -07 000000623 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:05:40.488 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 23:05:40.488 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 23:05:40.568 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 23:05:40.568 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:05:40.568 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:05:40.568 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 23:05:40.588 -07 000000482 INF: Autofocus start
17-03-17 23:05:40.588 -07 000000482 INF: MeasureProfile start
17-03-17 23:05:40.598 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 71, FrontChillerTemperature: 4.003063,
17-03-17 23:05:40.608 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:05:40.608 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:05:40.608 -07 000000482 INF: MeasureProfile done
17-03-17 23:05:40.608 -07 000000482 INF: X=0  Z correction [um]=-0.02394831
17-03-17 23:05:40.608 -07 000000482 INF: Autofocus finished
17-03-17 23:05:40.618 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 23:05:40.628 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:05:40.828 -07 000000541 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:05:40.828 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 23:05:40.828 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02734375, Z-position -0.136872122488311. ----------
17-03-17 23:05:40.838 -07 000000610 INF: Cycle	71	Tile	12	Exposure Settings		A	466	G	224	T	224	C	466
17-03-17 23:05:40.838 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28405, sync = True, waitForSettling = True)
17-03-17 23:05:40.838 -07 000000610 INF: Z Motor: Moving to -0.130030 mm, started at -0.136872 mm, distance = 6.84 um
17-03-17 23:05:40.838 -07 000000610 INF: FPGA: Xmit ZDACW 28405\n [Z Motor]
17-03-17 23:05:40.838 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 23:05:40.848 -07 000000610 INF: FPGA: 'ZDACW 28405' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:05:40.848 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:05:40.848 -07 000000486 INF: FPGA: Recv ZDACR 28405
17-03-17 23:05:40.858 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:40.858 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:05:41.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:41.008 -07 000000486 INF: FPGA: Recv ZSGSRD 29526
17-03-17 23:05:41.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:05:41.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:41.018 -07 000000561 INF: FPGA: Recv ZSGSRD 29534
17-03-17 23:05:41.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:41.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:41.028 -07 000000551 INF: FPGA: Recv ZSGSRD 29521
17-03-17 23:05:41.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:41.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:41.038 -07 000000623 INF: FPGA: Recv ZSGSRD 29527
17-03-17 23:05:41.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:41.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:41.048 -07 000000551 INF: FPGA: Recv ZSGSRD 29527
17-03-17 23:05:41.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:41.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:41.058 -07 000000623 INF: FPGA: Recv ZSGSRD 29530
17-03-17 23:05:41.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:41.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:41.068 -07 000000429 INF: FPGA: Recv ZSGSRD 29537
17-03-17 23:05:41.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:41.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:41.078 -07 000000576 INF: FPGA: Recv ZSGSRD 29536
17-03-17 23:05:41.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:41.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:41.088 -07 000000593 INF: FPGA: Recv ZSGSRD 29530
17-03-17 23:05:41.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:41.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:41.098 -07 000000462 INF: FPGA: Recv ZSGSRD 29533
17-03-17 23:05:41.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:41.108 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:05:41.108 -07 000000618 INF: FPGA: Recv ZPIEZORD 25168
17-03-17 23:05:41.118 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:41.118 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.334 V. Piezo Error = -9.6 V.
17-03-17 23:05:41.118 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.0 um, Read 10 ADC samples: Avg = 29530 (-129.3 uncal um), Error = 0.8 uncal um, Median = 29530 (-129.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29521 (-129.2 uncal um), Max = 29537 (-129.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 23:05:41.118 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29530, posNoise = 7, negNoise = 9
17-03-17 23:05:41.118 -07 000000610 INF: Z Motor: After move to -0.130030, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:05:41.118 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 23:05:41.118 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:05:41.118 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:05:41.118 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:05:41.118 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:05:41.118 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:05:41.118 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:05:41.118 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:05:41.118 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:05:41.118 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:05:41.118 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:05:41.118 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:05:41.118 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:05:41.128 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 23:05:41.128 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:05:41.128 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:05:41.128 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:05:41.138 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 23:05:41.138 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:05:41.138 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 23:05:41.138 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 23:05:41.138 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 466 466 224 224 28582 150\n [Camera]
17-03-17 23:05:41.338 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-17 23:05:41.808 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 658
17-03-17 23:05:41.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 658
17-03-17 23:05:41.808 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:05:41.808 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 658
17-03-17 23:05:41.808 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:05:41.808 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 658
17-03-17 23:05:41.808 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 23:05:41.808 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:05:41.818 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:05:41.818 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 23:05:41.998 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28582 851
17-03-17 23:05:42.038 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:05:42.038 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 70. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1132, R2=1178, Total=2310. Warn if over 250 bubbles per interval.
17-03-17 23:05:42.148 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1001
17-03-17 23:05:42.208 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 23:05:42.208 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 23:05:42.208 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:05:42.208 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 23:05:42.208 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 23:05:42.208 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:05:42.208 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:05:42.208 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 23:05:42.218 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:05:42.218 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 23:05:42.368 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1225
17-03-17 23:05:42.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1225
17-03-17 23:05:42.368 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:05:42.378 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1225
17-03-17 23:05:42.378 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1225
17-03-17 23:05:42.378 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:05:42.488 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:05:42.488 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-17 23:05:42.498 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:05:42.498 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 23:05:42.558 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP 1418
17-03-17 23:05:42.558 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:05:42.558 -07 000000610 INF: FPGA: 'CAMDBLSNAP 466 466 224 224 28582 150' command took 2 ms to send, 1419 ms to get response, and 1425 ms overall
17-03-17 23:05:42.568 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:05:42.568 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02734375, Z-Position -0.130030336557336. ------
17-03-17 23:05:42.568 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:05:42.568 -07 000000409 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13641 mm
17-03-17 23:05:42.568 -07 000000409 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:05:42.568 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 23:05:42.568 -07 000000462 INF: Y Motor: Moving to 69.8726 mm, started at 69.0273 mm, delta = 0.8453 mm
17-03-17 23:05:42.568 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 29799, sync = True, waitForSettling = False)
17-03-17 23:05:42.568 -07 000000382 INF: Z Motor: Moving to -0.136411 mm, started at -0.130030 mm, distance = -6.38 um
17-03-17 23:05:42.568 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:05:42.578 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:05:42.578 -07 000000382 INF: FPGA: Xmit ZDACW 29799\n [Z Motor]
17-03-17 23:05:42.578 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 23:05:42.588 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:05:42.588 -07 000000382 INF: FPGA: 'ZDACW 29799' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 23:05:42.588 -07 000000561 INF: FPGA: Recv YRDPOS 141369
17-03-17 23:05:42.598 -07 000000475 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:05:42.598 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 23:05:42.598 -07 000000462 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:05:42.598 -07 000000462 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:05:42.598 -07 000000462 INF: Y Motor: Moving 1352 steps-31
17-03-17 23:05:42.608 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:05:42.608 -07 000000448 INF: FPGA: Recv ZDACR 29799
17-03-17 23:05:42.618 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:05:42.618 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:05:42.618 -07 000000382 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 23:05:42.798 -07 000000623 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:05:42.798 -07 000000475 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 23:05:42.888 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 390 ms.
17-03-17 23:05:42.888 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 23:05:42.888 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:05:42.888 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 23:05:42.888 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 23:05:42.888 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:05:42.888 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:05:42.888 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:05:42.888 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 519 ms.
17-03-17 23:05:42.898 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 520 ms.
17-03-17 23:05:42.988 -07 000000482 INF: FPGA: Recv YMVTILE
17-03-17 23:05:42.988 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 367 ms to get response, and 392 ms overall
17-03-17 23:05:43.028 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:05:43.038 -07 000000429 INF: FPGA: Recv YRDPOS 143080
17-03-17 23:05:43.038 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 4 ms to get response, and 6 ms overall
17-03-17 23:05:43.038 -07 000000462 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:05:43.038 -07 000000462 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 23:05:43.038 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.845 mm, average velocity = 2.156 mm/sec
17-03-17 23:05:43.988 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:05:43.988 -07 000000551 INF: FPGA: Recv YRDPOS 143080
17-03-17 23:05:43.998 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:05:43.998 -07 000000462 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:05:44.018 -07 000000462 INF: Y Motor: After move to 69.872612, error = -0.009331, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:05:44.018 -07 000000462 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:05:44.018 -07 000000462 INF: Y Motor: Moved to 69.8633 after 1448 ms (table move)
17-03-17 23:05:44.018 -07 000000409 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136411 mm (DAC = 29799)
17-03-17 23:05:44.018 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:44.028 -07 000000541 INF: FPGA: Recv ZSGSRD 30522
17-03-17 23:05:44.028 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 5 ms to get response, and 6 ms overall
17-03-17 23:05:44.028 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:44.028 -07 000000627 INF: FPGA: Recv ZSGSRD 30518
17-03-17 23:05:44.038 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:05:44.038 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:44.038 -07 000000382 INF: FPGA: Recv ZSGSRD 30518
17-03-17 23:05:44.048 -07 000000409 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:44.048 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:44.048 -07 000000448 INF: FPGA: Recv ZSGSRD 30532
17-03-17 23:05:44.058 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:44.058 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:44.058 -07 000000547 INF: FPGA: Recv ZSGSRD 30530
17-03-17 23:05:44.068 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:44.068 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:44.068 -07 000000448 INF: FPGA: Recv ZSGSRD 30523
17-03-17 23:05:44.078 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:44.078 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:44.078 -07 000000429 INF: FPGA: Recv ZSGSRD 30525
17-03-17 23:05:44.088 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:44.088 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:44.088 -07 000000382 INF: FPGA: Recv ZSGSRD 30521
17-03-17 23:05:44.098 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:44.098 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:44.098 -07 000000482 INF: FPGA: Recv ZSGSRD 30524
17-03-17 23:05:44.108 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:44.108 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:44.108 -07 000000475 INF: FPGA: Recv ZSGSRD 30517
17-03-17 23:05:44.118 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:44.118 -07 000000409 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:05:44.118 -07 000000478 INF: FPGA: Recv ZPIEZORD 26477
17-03-17 23:05:44.128 -07 000000409 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:44.128 -07 000000409 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.547 V. Piezo Error = -8.9 V.
17-03-17 23:05:44.128 -07 000000409 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.4 um, Read 10 ADC samples: Avg = 30523 (-135.6 uncal um), Error = 0.8 uncal um, Median = 30522 (-135.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30517 (-135.6 uncal um), Max = 30532 (-135.7 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:05:44.128 -07 000000409 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30523, posNoise = 9, negNoise = 6
17-03-17 23:05:44.128 -07 000000409 INF: Z Motor: After move to -0.136411, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:05:44.128 -07 000000409 INF: Z Motor: Settle wait time = 1451 ms, measure time = 102 ms (allowed 150 ms), total time = 1553 ms
17-03-17 23:05:44.128 -07 000000409 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 23:05:44.178 -07 000000409 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-17 23:05:44.178 -07 000000409 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:05:44.178 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:05:44.178 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:05:44.178 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:05:44.178 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:05:44.178 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:05:44.178 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:05:44.178 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:05:44.178 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:05:44.188 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:05:44.188 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:05:44.198 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 23:05:44.198 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 23:05:44.198 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:05:44.238 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:05:44.438 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:05:44.438 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:05:44.438 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:05:44.448 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2451345512, 0x0, 559484976) start.
17-03-17 23:05:44.478 -07 000000448 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:05:44.478 -07 000000593 INF: FPGA: Recv CAMSNAP
17-03-17 23:05:44.478 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 23:05:44.568 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2451345512, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 23:05:44.568 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:05:44.568 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:05:44.568 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 23:05:44.678 -07 000000561 INF: Autofocus start
17-03-17 23:05:44.678 -07 000000561 INF: MeasureProfile start
17-03-17 23:05:44.678 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:05:44.678 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:05:44.688 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:05:44.688 -07 000000478 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:05:44.688 -07 000000561 INF: MeasureProfile done
17-03-17 23:05:44.688 -07 000000561 INF: X=0  Z correction [um]=-0.02394831
17-03-17 23:05:44.688 -07 000000561 INF: Autofocus finished
17-03-17 23:05:44.888 -07 000000486 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:05:44.888 -07 000000478 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:05:44.888 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86328125, Z-position -0.136409579214105. ----------
17-03-17 23:05:44.888 -07 000000610 INF: Cycle	71	Tile	13	Exposure Settings		A	466	G	224	T	224	C	466
17-03-17 23:05:44.898 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28306, sync = True, waitForSettling = True)
17-03-17 23:05:44.898 -07 000000610 INF: Z Motor: Moving to -0.129577 mm, started at -0.136410 mm, distance = 6.83 um
17-03-17 23:05:44.898 -07 000000610 INF: FPGA: Xmit ZDACW 28306\n [Z Motor]
17-03-17 23:05:44.898 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 23:05:44.908 -07 000000610 INF: FPGA: 'ZDACW 28306' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:05:44.908 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:05:44.908 -07 000000551 INF: FPGA: Recv ZDACR 28306
17-03-17 23:05:44.918 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:44.918 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:05:45.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:45.068 -07 000000429 INF: FPGA: Recv ZSGSRD 29459
17-03-17 23:05:45.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:05:45.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:45.078 -07 000000551 INF: FPGA: Recv ZSGSRD 29459
17-03-17 23:05:45.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:45.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:45.088 -07 000000486 INF: FPGA: Recv ZSGSRD 29460
17-03-17 23:05:45.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:45.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:45.098 -07 000000551 INF: FPGA: Recv ZSGSRD 29458
17-03-17 23:05:45.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:45.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:45.108 -07 000000409 INF: FPGA: Recv ZSGSRD 29457
17-03-17 23:05:45.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:45.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:45.118 -07 000000501 INF: FPGA: Recv ZSGSRD 29455
17-03-17 23:05:45.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:45.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:45.128 -07 000000409 INF: FPGA: Recv ZSGSRD 29455
17-03-17 23:05:45.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:45.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:45.138 -07 000000501 INF: FPGA: Recv ZSGSRD 29457
17-03-17 23:05:45.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:45.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:45.148 -07 000000547 INF: FPGA: Recv ZSGSRD 29456
17-03-17 23:05:45.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:45.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:45.158 -07 000000502 INF: FPGA: Recv ZSGSRD 29462
17-03-17 23:05:45.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:45.168 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:05:45.168 -07 000000547 INF: FPGA: Recv ZPIEZORD 25088
17-03-17 23:05:45.178 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:45.178 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.319 V. Piezo Error = -9.6 V.
17-03-17 23:05:45.178 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.6 um, Read 10 ADC samples: Avg = 29458 (-128.8 uncal um), Error = 0.8 uncal um, Median = 29458 (-128.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29455 (-128.8 uncal um), Max = 29462 (-128.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 23:05:45.178 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29458, posNoise = 4, negNoise = 3
17-03-17 23:05:45.178 -07 000000610 INF: Z Motor: After move to -0.129577, error = 0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:05:45.178 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 23:05:45.178 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:05:45.178 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:05:45.178 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:05:45.178 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:05:45.178 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:05:45.178 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:05:45.178 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:05:45.178 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:05:45.178 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:05:45.178 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:05:45.178 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:05:45.178 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:05:45.188 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 23:05:45.188 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:05:45.188 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:05:45.188 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:05:45.198 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 23:05:45.198 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:05:45.198 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 23:05:45.198 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:05:45.198 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 466 466 224 224 28483 150\n [Camera]
17-03-17 23:05:45.398 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:05:45.858 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 658
17-03-17 23:05:45.858 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 658
17-03-17 23:05:45.858 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:05:45.868 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 658
17-03-17 23:05:45.868 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 658
17-03-17 23:05:45.868 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:05:45.868 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:05:45.868 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 23:05:45.868 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:05:45.868 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2602438304, 0x0, 418435064) start.
17-03-17 23:05:45.988 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 71, FrontChillerTemperature: 3.981281,
17-03-17 23:05:46.058 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28483 851
17-03-17 23:05:46.208 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1001
17-03-17 23:05:46.238 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2602438304, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 23:05:46.238 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 23:05:46.238 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:05:46.238 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 23:05:46.248 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 23:05:46.248 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:05:46.248 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 23:05:46.248 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 23:05:46.248 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 23:05:46.258 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 23:05:46.428 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1226
17-03-17 23:05:46.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1226
17-03-17 23:05:46.428 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:05:46.438 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:05:46.438 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 23:05:46.438 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1226
17-03-17 23:05:46.438 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1226
17-03-17 23:05:46.438 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:05:46.438 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:05:46.438 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 23:05:46.618 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1417
17-03-17 23:05:46.618 -07 000000551 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:05:46.618 -07 000000610 INF: FPGA: 'CAMDBLSNAP 466 466 224 224 28483 150' command took 2 ms to send, 1418 ms to get response, and 1424 ms overall
17-03-17 23:05:46.628 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:05:46.628 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86328125, Z-Position -0.129567793283129. ------
17-03-17 23:05:46.628 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:05:46.628 -07 000000482 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13595 mm
17-03-17 23:05:46.628 -07 000000482 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:05:46.628 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:05:46.628 -07 000000478 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 23:05:46.628 -07 000000478 INF: Y Motor: Moving to 70.7026 mm, started at 69.8633 mm, delta = 0.8393 mm
17-03-17 23:05:46.628 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 29698, sync = True, waitForSettling = False)
17-03-17 23:05:46.628 -07 000000486 INF: Z Motor: Moving to -0.135949 mm, started at -0.129568 mm, distance = -6.38 um
17-03-17 23:05:46.638 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:05:46.638 -07 000000486 INF: FPGA: Xmit ZDACW 29698\n [Z Motor]
17-03-17 23:05:46.638 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 23:05:46.648 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:05:46.648 -07 000000486 INF: FPGA: 'ZDACW 29698' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 23:05:46.648 -07 000000502 INF: FPGA: Recv YRDPOS 143081
17-03-17 23:05:46.658 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 23:05:46.658 -07 000000478 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:05:46.658 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:05:46.658 -07 000000478 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:05:46.658 -07 000000478 INF: Y Motor: Moving 1342 steps-19
17-03-17 23:05:46.668 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:05:46.668 -07 000000561 INF: FPGA: Recv ZDACR 29698
17-03-17 23:05:46.678 -07 000000478 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:05:46.678 -07 000000486 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:05:46.678 -07 000000486 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-17 23:05:46.828 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 23:05:46.828 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 23:05:46.828 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:05:46.828 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 23:05:46.828 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 23:05:46.828 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:05:46.828 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:05:46.828 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 23:05:46.828 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:05:46.838 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 23:05:46.858 -07 000000547 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:05:46.858 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 23:05:47.038 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:05:47.038 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 70. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1132, R2=1178, Total=2310. Warn if over 250 bubbles per interval.
17-03-17 23:05:47.048 -07 000000475 INF: FPGA: Recv YMVTILE
17-03-17 23:05:47.048 -07 000000478 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 367 ms to get response, and 394 ms overall
17-03-17 23:05:47.088 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:05:47.098 -07 000000618 INF: FPGA: Recv YRDPOS 144770
17-03-17 23:05:47.098 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 23:05:47.098 -07 000000478 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:05:47.098 -07 000000478 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 23:05:47.098 -07 000000478 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.839 mm, average velocity = 2.130 mm/sec
17-03-17 23:05:48.048 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:05:48.048 -07 000000561 INF: FPGA: Recv YRDPOS 144770
17-03-17 23:05:48.058 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:48.058 -07 000000478 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:05:48.078 -07 000000478 INF: Y Motor: After move to 70.702606, error = -0.014130, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:05:48.078 -07 000000478 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:05:48.078 -07 000000478 INF: Y Motor: Moved to 70.6885 after 1447 ms (table move)
17-03-17 23:05:48.078 -07 000000482 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135949 mm (DAC = 29698)
17-03-17 23:05:48.078 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:48.088 -07 000000462 INF: FPGA: Recv ZSGSRD 30460
17-03-17 23:05:48.088 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 23:05:48.088 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:48.088 -07 000000502 INF: FPGA: Recv ZSGSRD 30457
17-03-17 23:05:48.098 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:05:48.098 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:48.098 -07 000000501 INF: FPGA: Recv ZSGSRD 30447
17-03-17 23:05:48.108 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:48.108 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:48.108 -07 000000547 INF: FPGA: Recv ZSGSRD 30451
17-03-17 23:05:48.118 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:48.118 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:48.118 -07 000000475 INF: FPGA: Recv ZSGSRD 30452
17-03-17 23:05:48.128 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:48.128 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:48.128 -07 000000429 INF: FPGA: Recv ZSGSRD 30452
17-03-17 23:05:48.138 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:48.138 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:48.138 -07 000000541 INF: FPGA: Recv ZSGSRD 30445
17-03-17 23:05:48.148 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:48.148 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:48.148 -07 000000382 INF: FPGA: Recv ZSGSRD 30448
17-03-17 23:05:48.158 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:48.158 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:48.158 -07 000000561 INF: FPGA: Recv ZSGSRD 30448
17-03-17 23:05:48.168 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:48.168 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:48.168 -07 000000478 INF: FPGA: Recv ZSGSRD 30454
17-03-17 23:05:48.178 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:48.178 -07 000000482 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:05:48.178 -07 000000486 INF: FPGA: Recv ZPIEZORD 26373
17-03-17 23:05:48.188 -07 000000482 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:48.188 -07 000000482 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.3 V, since DAC is at 4.532 V. Piezo Error = -9.0 V.
17-03-17 23:05:48.188 -07 000000482 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.9 um, Read 10 ADC samples: Avg = 30451 (-135.2 uncal um), Error = 0.8 uncal um, Median = 30452 (-135.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30445 (-135.1 uncal um), Max = 30460 (-135.2 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:05:48.188 -07 000000482 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30451, posNoise = 9, negNoise = 6
17-03-17 23:05:48.188 -07 000000482 INF: Z Motor: After move to -0.135949, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:05:48.188 -07 000000482 INF: Z Motor: Settle wait time = 1450 ms, measure time = 101 ms (allowed 150 ms), total time = 1551 ms
17-03-17 23:05:48.188 -07 000000482 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 23:05:48.238 -07 000000482 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1606 ms
17-03-17 23:05:48.238 -07 000000482 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:05:48.238 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:05:48.238 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:05:48.238 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:05:48.238 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:05:48.238 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:05:48.238 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:05:48.238 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:05:48.238 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:05:48.248 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 23:05:48.248 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:05:48.258 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 23:05:48.258 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 23:05:48.258 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:05:48.308 -07 000000551 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:05:48.508 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:05:48.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:05:48.508 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:05:48.618 -07 000000475 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:05:48.618 -07 000000475 INF: FPGA: Recv CAMSNAP
17-03-17 23:05:48.618 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 352 ms to get response, and 355 ms overall
17-03-17 23:05:48.618 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2470426896, 0x0, 559484976) start.
17-03-17 23:05:48.748 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2470426896, 0x0, 559484976) end. Duration was 128 ms.
17-03-17 23:05:48.748 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:05:48.748 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:05:48.748 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 239 ms.
17-03-17 23:05:48.818 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:05:48.818 -07 000000547 INF: Autofocus start
17-03-17 23:05:48.818 -07 000000547 INF: MeasureProfile start
17-03-17 23:05:48.818 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:05:48.828 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:05:48.828 -07 000000593 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:05:48.828 -07 000000547 INF: MeasureProfile done
17-03-17 23:05:48.828 -07 000000547 INF: X=16  Z correction [um]=0.0530179
17-03-17 23:05:48.828 -07 000000547 INF: Autofocus finished
17-03-17 23:05:49.028 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:05:49.028 -07 000000593 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 198 ms to get response, and 207 ms overall
17-03-17 23:05:49.038 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6884765625, Z-position -0.135947035939898. ----------
17-03-17 23:05:49.038 -07 000000610 INF: Cycle	71	Tile	14	Exposure Settings		A	466	G	224	T	224	C	466
17-03-17 23:05:49.038 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28223, sync = True, waitForSettling = True)
17-03-17 23:05:49.038 -07 000000610 INF: Z Motor: Moving to -0.129197 mm, started at -0.135947 mm, distance = 6.75 um
17-03-17 23:05:49.038 -07 000000610 INF: FPGA: Xmit ZDACW 28223\n [Z Motor]
17-03-17 23:05:49.038 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 23:05:49.048 -07 000000610 INF: FPGA: 'ZDACW 28223' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:05:49.048 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:05:49.048 -07 000000478 INF: FPGA: Recv ZDACR 28223
17-03-17 23:05:49.058 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:49.058 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:05:49.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:49.208 -07 000000547 INF: FPGA: Recv ZSGSRD 29408
17-03-17 23:05:49.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:49.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:49.218 -07 000000415 INF: FPGA: Recv ZSGSRD 29405
17-03-17 23:05:49.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:49.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:49.228 -07 000000501 INF: FPGA: Recv ZSGSRD 29400
17-03-17 23:05:49.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:49.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:49.238 -07 000000627 INF: FPGA: Recv ZSGSRD 29397
17-03-17 23:05:49.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:49.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:49.248 -07 000000593 INF: FPGA: Recv ZSGSRD 29398
17-03-17 23:05:49.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:49.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:49.258 -07 000000561 INF: FPGA: Recv ZSGSRD 29400
17-03-17 23:05:49.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:49.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:49.268 -07 000000502 INF: FPGA: Recv ZSGSRD 29400
17-03-17 23:05:49.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:49.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:49.278 -07 000000475 INF: FPGA: Recv ZSGSRD 29395
17-03-17 23:05:49.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:49.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:49.288 -07 000000618 INF: FPGA: Recv ZSGSRD 29405
17-03-17 23:05:49.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:49.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:49.298 -07 000000415 INF: FPGA: Recv ZSGSRD 29399
17-03-17 23:05:49.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:49.308 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:05:49.308 -07 000000486 INF: FPGA: Recv ZPIEZORD 25015
17-03-17 23:05:49.318 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:49.318 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.307 V. Piezo Error = -9.6 V.
17-03-17 23:05:49.318 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.2 um, Read 10 ADC samples: Avg = 29401 (-128.4 uncal um), Error = 0.8 uncal um, Median = 29400 (-128.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29395 (-128.4 uncal um), Max = 29408 (-128.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:05:49.318 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29401, posNoise = 7, negNoise = 6
17-03-17 23:05:49.318 -07 000000610 INF: Z Motor: After move to -0.129197, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:05:49.318 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 23:05:49.318 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:05:49.318 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:05:49.318 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:05:49.318 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:05:49.318 -07 000000409 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:05:49.318 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:05:49.318 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:05:49.318 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:05:49.318 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:05:49.318 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:05:49.318 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 23:05:49.318 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:05:49.328 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:05:49.328 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:05:49.328 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:05:49.328 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:05:49.328 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 23:05:49.328 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 23:05:49.328 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 23:05:49.328 -07 000000409 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:05:49.338 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 466 466 224 224 28399 150\n [Camera]
17-03-17 23:05:49.538 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:05:49.998 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 658
17-03-17 23:05:49.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 658
17-03-17 23:05:50.008 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:05:50.008 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 658
17-03-17 23:05:50.008 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 658
17-03-17 23:05:50.008 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:05:50.008 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:05:50.008 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 583729424, 0x0, 391868352) start.
17-03-17 23:05:50.018 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:05:50.018 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 23:05:50.198 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28399 851
17-03-17 23:05:50.348 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1001
17-03-17 23:05:50.388 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 583729424, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 23:05:50.388 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 23:05:50.388 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:05:50.388 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 23:05:50.388 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 23:05:50.388 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:05:50.398 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 23:05:50.398 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 23:05:50.398 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:05:50.398 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 23:05:50.568 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1225
17-03-17 23:05:50.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1225
17-03-17 23:05:50.568 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:05:50.568 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1225
17-03-17 23:05:50.568 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1225
17-03-17 23:05:50.578 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:05:50.688 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:05:50.688 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 23:05:50.688 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:05:50.688 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2480697672, 0x0, 391868352) start.
17-03-17 23:05:50.758 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1418
17-03-17 23:05:50.758 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:05:50.758 -07 000000610 INF: FPGA: 'CAMDBLSNAP 466 466 224 224 28399 150' command took 2 ms to send, 1418 ms to get response, and 1424 ms overall
17-03-17 23:05:50.768 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:05:50.768 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6884765625, Z-Position -0.129201613191049. ------
17-03-17 23:05:50.768 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:05:50.768 -07 000000448 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13549 mm
17-03-17 23:05:50.768 -07 000000448 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:05:50.768 -07 000000593 INF: Z Motor: Entering MoveAbsStepped (DAC = 29598, sync = True, waitForSettling = False)
17-03-17 23:05:50.768 -07 000000415 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 23:05:50.768 -07 000000415 INF: Y Motor: Moving to 71.5326 mm, started at 70.6885 mm, delta = 0.8441 mm
17-03-17 23:05:50.768 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:05:50.768 -07 000000593 INF: Z Motor: Moving to -0.135491 mm, started at -0.129202 mm, distance = -6.29 um
17-03-17 23:05:50.778 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:05:50.778 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:05:50.778 -07 000000429 INF: FPGA: Recv YRDPOS 144771
17-03-17 23:05:50.788 -07 000000593 INF: FPGA: Xmit ZDACW 29598\n [Z Motor]
17-03-17 23:05:50.788 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 23:05:50.788 -07 000000415 INF: Y Motor: Encoder = 144771 = motor step 113102.3 = 70.6890 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:05:50.788 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 23:05:50.788 -07 000000415 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:05:50.788 -07 000000415 INF: Y Motor: Moving 1350 steps-29
17-03-17 23:05:50.798 -07 000000593 INF: FPGA: 'ZDACW 29598' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 23:05:50.798 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:05:50.808 -07 000000415 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:05:50.818 -07 000000593 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:05:50.818 -07 000000429 INF: FPGA: Recv ZDACR 29598
17-03-17 23:05:50.828 -07 000000593 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:05:50.828 -07 000000593 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-17 23:05:50.998 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:05:50.998 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 23:05:51.078 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 23:05:51.078 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 23:05:51.078 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:05:51.078 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2480697672, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 23:05:51.078 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 23:05:51.078 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:05:51.088 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:05:51.088 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:05:51.088 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 516 ms.
17-03-17 23:05:51.088 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 517 ms.
17-03-17 23:05:51.178 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-17 23:05:51.178 -07 000000415 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-17 23:05:51.218 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:05:51.228 -07 000000551 INF: FPGA: Recv YRDPOS 146471
17-03-17 23:05:51.228 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:05:51.228 -07 000000415 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:05:51.228 -07 000000415 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 23:05:51.228 -07 000000415 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.844 mm, average velocity = 2.153 mm/sec
17-03-17 23:05:51.348 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 71, FrontChillerTemperature: 3.971733,
17-03-17 23:05:52.038 -07 000000409 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:05:52.038 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 70. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1132, R2=1178, Total=2310. Warn if over 250 bubbles per interval.
17-03-17 23:05:52.178 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:05:52.178 -07 000000547 INF: FPGA: Recv YRDPOS 146471
17-03-17 23:05:52.188 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:05:52.188 -07 000000415 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:05:52.208 -07 000000415 INF: Y Motor: After move to 71.532608, error = -0.013565, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:05:52.208 -07 000000415 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:05:52.208 -07 000000415 INF: Y Motor: Moved to 71.5190 after 1438 ms (table move)
17-03-17 23:05:52.208 -07 000000448 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135491 mm (DAC = 29598)
17-03-17 23:05:52.208 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:52.218 -07 000000623 INF: FPGA: Recv ZSGSRD 30379
17-03-17 23:05:52.218 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 23:05:52.218 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:52.218 -07 000000627 INF: FPGA: Recv ZSGSRD 30390
17-03-17 23:05:52.228 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:05:52.228 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:52.228 -07 000000478 INF: FPGA: Recv ZSGSRD 30376
17-03-17 23:05:52.238 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:52.238 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:52.238 -07 000000382 INF: FPGA: Recv ZSGSRD 30373
17-03-17 23:05:52.248 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:52.248 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:52.248 -07 000000576 INF: FPGA: Recv ZSGSRD 30384
17-03-17 23:05:52.258 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:52.258 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:52.258 -07 000000475 INF: FPGA: Recv ZSGSRD 30387
17-03-17 23:05:52.268 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:52.268 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:52.268 -07 000000561 INF: FPGA: Recv ZSGSRD 30380
17-03-17 23:05:52.278 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:52.278 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:52.278 -07 000000462 INF: FPGA: Recv ZSGSRD 30386
17-03-17 23:05:52.288 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:52.288 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:52.288 -07 000000593 INF: FPGA: Recv ZSGSRD 30374
17-03-17 23:05:52.298 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:52.298 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:52.298 -07 000000482 INF: FPGA: Recv ZSGSRD 30384
17-03-17 23:05:52.308 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:52.308 -07 000000448 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:05:52.308 -07 000000593 INF: FPGA: Recv ZPIEZORD 26333
17-03-17 23:05:52.318 -07 000000448 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:52.318 -07 000000448 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.516 V. Piezo Error = -8.9 V.
17-03-17 23:05:52.318 -07 000000448 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.5 um, Read 10 ADC samples: Avg = 30381 (-134.7 uncal um), Error = 0.8 uncal um, Median = 30382 (-134.7 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30373 (-134.7 uncal um), Max = 30390 (-134.8 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 23:05:52.318 -07 000000448 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30381, posNoise = 9, negNoise = 8
17-03-17 23:05:52.318 -07 000000448 INF: Z Motor: After move to -0.135491, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:05:52.318 -07 000000448 INF: Z Motor: Settle wait time = 1440 ms, measure time = 102 ms (allowed 150 ms), total time = 1542 ms
17-03-17 23:05:52.318 -07 000000448 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 23:05:52.368 -07 000000448 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1595 ms
17-03-17 23:05:52.368 -07 000000448 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:05:52.368 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:05:52.368 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:05:52.368 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:05:52.368 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:05:52.368 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:05:52.368 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:05:52.378 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:05:52.378 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:05:52.378 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:05:52.378 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:05:52.388 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 23:05:52.388 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 23:05:52.388 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:05:52.438 -07 000000486 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:05:52.638 -07 000000478 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:05:52.638 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:05:52.638 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:05:52.638 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 596199184, 0x0, 559484976) start.
17-03-17 23:05:52.678 -07 000000462 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:05:52.678 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-17 23:05:52.678 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 23:05:52.758 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 596199184, 0x0, 559484976) end. Duration was 123 ms.
17-03-17 23:05:52.758 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:05:52.758 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 23:05:52.758 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 126 ms.
17-03-17 23:05:52.778 -07 000000541 INF: Autofocus start
17-03-17 23:05:52.778 -07 000000541 INF: MeasureProfile start
17-03-17 23:05:52.778 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:05:52.778 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:05:52.788 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:05:52.788 -07 000000547 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:05:52.788 -07 000000541 INF: MeasureProfile done
17-03-17 23:05:52.788 -07 000000541 INF: X=96  Z correction [um]=0.437849
17-03-17 23:05:52.788 -07 000000541 INF: Autofocus finished
17-03-17 23:05:52.988 -07 000000409 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:05:52.988 -07 000000547 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:05:52.988 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51904296875, Z-position -0.135497341089975. ----------
17-03-17 23:05:52.988 -07 000000610 INF: Cycle	71	Tile	15	Exposure Settings		A	466	G	224	T	224	C	466
17-03-17 23:05:52.998 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28206, sync = True, waitForSettling = True)
17-03-17 23:05:52.998 -07 000000610 INF: Z Motor: Moving to -0.129119 mm, started at -0.135497 mm, distance = 6.38 um
17-03-17 23:05:52.998 -07 000000610 INF: FPGA: Xmit ZDACW 28206\n [Z Motor]
17-03-17 23:05:52.998 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 23:05:53.008 -07 000000610 INF: FPGA: 'ZDACW 28206' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:05:53.008 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:05:53.008 -07 000000618 INF: FPGA: Recv ZDACR 28206
17-03-17 23:05:53.018 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:53.018 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:05:53.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:53.168 -07 000000478 INF: FPGA: Recv ZSGSRD 29387
17-03-17 23:05:53.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:05:53.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:53.178 -07 000000623 INF: FPGA: Recv ZSGSRD 29385
17-03-17 23:05:53.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:53.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:53.188 -07 000000486 INF: FPGA: Recv ZSGSRD 29392
17-03-17 23:05:53.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:53.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:53.198 -07 000000541 INF: FPGA: Recv ZSGSRD 29388
17-03-17 23:05:53.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:53.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:53.208 -07 000000618 INF: FPGA: Recv ZSGSRD 29385
17-03-17 23:05:53.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:53.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:53.218 -07 000000462 INF: FPGA: Recv ZSGSRD 29390
17-03-17 23:05:53.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:53.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:53.228 -07 000000623 INF: FPGA: Recv ZSGSRD 29388
17-03-17 23:05:53.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:53.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:53.238 -07 000000486 INF: FPGA: Recv ZSGSRD 29390
17-03-17 23:05:53.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:53.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:53.248 -07 000000541 INF: FPGA: Recv ZSGSRD 29388
17-03-17 23:05:53.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:53.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:53.258 -07 000000618 INF: FPGA: Recv ZSGSRD 29386
17-03-17 23:05:53.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:53.268 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:05:53.268 -07 000000415 INF: FPGA: Recv ZPIEZORD 25003
17-03-17 23:05:53.278 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:53.278 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.304 V. Piezo Error = -9.6 V.
17-03-17 23:05:53.278 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.1 um, Read 10 ADC samples: Avg = 29388 (-128.3 uncal um), Error = 0.8 uncal um, Median = 29388 (-128.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29385 (-128.3 uncal um), Max = 29392 (-128.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 23:05:53.278 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29388, posNoise = 4, negNoise = 3
17-03-17 23:05:53.278 -07 000000610 INF: Z Motor: After move to -0.129119, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:05:53.278 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 23:05:53.278 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:05:53.278 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:05:53.278 -07 000000409 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:05:53.278 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:05:53.278 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:05:53.278 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:05:53.278 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:05:53.278 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:05:53.278 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:05:53.278 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:05:53.278 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:05:53.278 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:05:53.288 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:05:53.288 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:05:53.288 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:05:53.288 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:05:53.298 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 23:05:53.298 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:05:53.298 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 23:05:53.298 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:05:53.308 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 466 466 224 224 28383 150\n [Camera]
17-03-17 23:05:53.498 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:05:53.968 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 658
17-03-17 23:05:53.968 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 658
17-03-17 23:05:53.968 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:05:53.968 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 658
17-03-17 23:05:53.968 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 658
17-03-17 23:05:53.978 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:05:53.978 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:05:53.978 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 23:05:53.978 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:05:53.978 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2602438304, 0x0, 418435064) start.
17-03-17 23:05:54.158 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28383 851
17-03-17 23:05:54.308 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1001
17-03-17 23:05:54.348 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 374 ms.
17-03-17 23:05:54.348 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 23:05:54.348 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:05:54.348 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2602438304, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 23:05:54.348 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 23:05:54.348 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:05:54.358 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 23:05:54.358 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 23:05:54.358 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:05:54.368 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 23:05:54.538 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1225
17-03-17 23:05:54.538 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1225
17-03-17 23:05:54.538 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:05:54.538 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:05:54.538 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 23:05:54.538 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1225
17-03-17 23:05:54.538 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1225
17-03-17 23:05:54.538 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:05:54.538 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:05:54.538 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 23:05:54.728 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1421
17-03-17 23:05:54.728 -07 000000593 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:05:54.728 -07 000000610 INF: FPGA: 'CAMDBLSNAP 466 466 224 224 28383 150' command took 2 ms to send, 1418 ms to get response, and 1428 ms overall
17-03-17 23:05:54.738 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:05:54.738 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51904296875, Z-Position -0.129118098433206. ------
17-03-17 23:05:54.738 -07 000000415 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13542 mm
17-03-17 23:05:54.738 -07 000000415 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:05:54.738 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:05:54.738 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 23:05:54.738 -07 000000382 INF: Y Motor: Moving to 72.3626 mm, started at 71.5190 mm, delta = 0.8436 mm
17-03-17 23:05:54.738 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 29582, sync = True, waitForSettling = False)
17-03-17 23:05:54.738 -07 000000551 INF: Z Motor: Moving to -0.135418 mm, started at -0.129118 mm, distance = -6.30 um
17-03-17 23:05:54.748 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:05:54.748 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:05:54.748 -07 000000551 INF: FPGA: Xmit ZDACW 29582\n [Z Motor]
17-03-17 23:05:54.748 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 23:05:54.758 -07 000000551 INF: FPGA: 'ZDACW 29582' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:05:54.758 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:05:54.758 -07 000000561 INF: FPGA: Recv YRDPOS 146472
17-03-17 23:05:54.768 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:05:54.768 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 23:05:54.768 -07 000000382 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:05:54.768 -07 000000382 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:05:54.768 -07 000000382 INF: Y Motor: Moving 1349 steps-28
17-03-17 23:05:54.778 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:05:54.778 -07 000000576 INF: FPGA: Recv ZDACR 29582
17-03-17 23:05:54.788 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:05:54.788 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:05:54.788 -07 000000551 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-17 23:05:54.928 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 23:05:54.928 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 23:05:54.928 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:05:54.928 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 23:05:54.928 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 23:05:54.928 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:05:54.938 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:05:54.938 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 23:05:54.938 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 23:05:54.948 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 23:05:54.968 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:05:54.968 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 23:05:55.158 -07 000000541 INF: FPGA: Recv YMVTILE
17-03-17 23:05:55.158 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 23:05:55.198 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:05:55.208 -07 000000551 INF: FPGA: Recv YRDPOS 148172
17-03-17 23:05:55.208 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:05:55.208 -07 000000382 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:05:55.208 -07 000000382 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 23:05:55.208 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.844 mm, average velocity = 2.146 mm/sec
17-03-17 23:05:56.158 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:05:56.158 -07 000000623 INF: FPGA: Recv YRDPOS 148173
17-03-17 23:05:56.168 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:05:56.168 -07 000000382 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:05:56.188 -07 000000382 INF: Y Motor: After move to 72.362610, error = -0.012512, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:05:56.188 -07 000000382 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 23:05:56.188 -07 000000382 INF: Y Motor: Moved to 72.3501 after 1446 ms (table move)
17-03-17 23:05:56.188 -07 000000415 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135418 mm (DAC = 29582)
17-03-17 23:05:56.188 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:56.198 -07 000000486 INF: FPGA: Recv ZSGSRD 30371
17-03-17 23:05:56.198 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 23:05:56.198 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:56.198 -07 000000478 INF: FPGA: Recv ZSGSRD 30375
17-03-17 23:05:56.208 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:05:56.208 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:56.208 -07 000000501 INF: FPGA: Recv ZSGSRD 30370
17-03-17 23:05:56.218 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:56.218 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:56.218 -07 000000547 INF: FPGA: Recv ZSGSRD 30365
17-03-17 23:05:56.228 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:56.228 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:56.228 -07 000000482 INF: FPGA: Recv ZSGSRD 30372
17-03-17 23:05:56.238 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:56.238 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:56.238 -07 000000486 INF: FPGA: Recv ZSGSRD 30371
17-03-17 23:05:56.248 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:56.248 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:56.248 -07 000000541 INF: FPGA: Recv ZSGSRD 30375
17-03-17 23:05:56.258 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:56.258 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:56.258 -07 000000448 INF: FPGA: Recv ZSGSRD 30379
17-03-17 23:05:56.268 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:56.268 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:56.268 -07 000000576 INF: FPGA: Recv ZSGSRD 30362
17-03-17 23:05:56.278 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:56.278 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:56.278 -07 000000382 INF: FPGA: Recv ZSGSRD 30374
17-03-17 23:05:56.288 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:56.288 -07 000000415 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:05:56.288 -07 000000409 INF: FPGA: Recv ZPIEZORD 26298
17-03-17 23:05:56.298 -07 000000415 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:56.298 -07 000000415 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.514 V. Piezo Error = -9.0 V.
17-03-17 23:05:56.298 -07 000000415 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.4 um, Read 10 ADC samples: Avg = 30371 (-134.6 uncal um), Error = 0.8 uncal um, Median = 30372 (-134.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30362 (-134.6 uncal um), Max = 30379 (-134.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 23:05:56.298 -07 000000415 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30371, posNoise = 8, negNoise = 9
17-03-17 23:05:56.298 -07 000000415 INF: Z Motor: After move to -0.135418, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:05:56.298 -07 000000415 INF: Z Motor: Settle wait time = 1449 ms, measure time = 102 ms (allowed 150 ms), total time = 1551 ms
17-03-17 23:05:56.298 -07 000000415 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 23:05:56.348 -07 000000415 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-17 23:05:56.348 -07 000000415 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:05:56.348 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:05:56.348 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:05:56.348 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:05:56.348 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:05:56.348 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:05:56.348 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:05:56.348 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:05:56.348 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:05:56.358 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:05:56.358 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:05:56.368 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 23:05:56.368 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 23:05:56.368 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:05:56.408 -07 000000547 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:05:56.608 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:05:56.608 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:05:56.608 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:05:56.618 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2451345512, 0x0, 559484976) start.
17-03-17 23:05:56.648 -07 000000486 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:05:56.648 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 23:05:56.648 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 23:05:56.718 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 71, FrontChillerTemperature: 3.98264,
17-03-17 23:05:56.738 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2451345512, 0x0, 559484976) end. Duration was 124 ms.
17-03-17 23:05:56.738 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:05:56.738 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:05:56.738 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-17 23:05:56.848 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:05:56.848 -07 000000475 INF: Autofocus start
17-03-17 23:05:56.848 -07 000000475 INF: MeasureProfile start
17-03-17 23:05:56.848 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:05:56.858 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:05:56.858 -07 000000551 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:05:56.858 -07 000000475 INF: MeasureProfile done
17-03-17 23:05:56.858 -07 000000475 INF: X=32  Z correction [um]=0.1299841
17-03-17 23:05:56.858 -07 000000475 INF: Autofocus finished
17-03-17 23:05:57.038 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:05:57.038 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 70. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1132, R2=1178, Total=2310. Warn if over 250 bubbles per interval.
17-03-17 23:05:57.058 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:05:57.058 -07 000000551 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:05:57.058 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.35009765625, Z-position -0.135433098968557. ----------
17-03-17 23:05:57.058 -07 000000610 INF: Cycle	71	Tile	16	Exposure Settings		A	466	G	224	T	224	C	466
17-03-17 23:05:57.068 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28123, sync = True, waitForSettling = True)
17-03-17 23:05:57.068 -07 000000610 INF: Z Motor: Moving to -0.128739 mm, started at -0.135433 mm, distance = 6.69 um
17-03-17 23:05:57.078 -07 000000610 INF: FPGA: Xmit ZDACW 28123\n [Z Motor]
17-03-17 23:05:57.078 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 23:05:57.088 -07 000000610 INF: FPGA: 'ZDACW 28123' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:05:57.088 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:05:57.088 -07 000000551 INF: FPGA: Recv ZDACR 28123
17-03-17 23:05:57.098 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:05:57.098 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:05:57.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:57.248 -07 000000486 INF: FPGA: Recv ZSGSRD 29334
17-03-17 23:05:57.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:05:57.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:57.258 -07 000000623 INF: FPGA: Recv ZSGSRD 29334
17-03-17 23:05:57.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:57.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:57.268 -07 000000551 INF: FPGA: Recv ZSGSRD 29329
17-03-17 23:05:57.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:57.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:57.278 -07 000000618 INF: FPGA: Recv ZSGSRD 29328
17-03-17 23:05:57.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:57.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:57.288 -07 000000501 INF: FPGA: Recv ZSGSRD 29330
17-03-17 23:05:57.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:57.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:57.298 -07 000000415 INF: FPGA: Recv ZSGSRD 29331
17-03-17 23:05:57.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:57.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:57.308 -07 000000561 INF: FPGA: Recv ZSGSRD 29333
17-03-17 23:05:57.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:57.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:57.318 -07 000000551 INF: FPGA: Recv ZSGSRD 29328
17-03-17 23:05:57.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:57.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:57.328 -07 000000382 INF: FPGA: Recv ZSGSRD 29330
17-03-17 23:05:57.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:57.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:05:57.338 -07 000000501 INF: FPGA: Recv ZSGSRD 29333
17-03-17 23:05:57.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:57.348 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:05:57.348 -07 000000482 INF: FPGA: Recv ZPIEZORD 24942
17-03-17 23:05:57.358 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:05:57.358 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.291 V. Piezo Error = -9.6 V.
17-03-17 23:05:57.358 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.7 um, Read 10 ADC samples: Avg = 29331 (-128.0 uncal um), Error = 0.8 uncal um, Median = 29330 (-128.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29328 (-128.0 uncal um), Max = 29334 (-128.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 23:05:57.358 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29331, posNoise = 3, negNoise = 3
17-03-17 23:05:57.358 -07 000000610 INF: Z Motor: After move to -0.128739, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:05:57.358 -07 000000610 INF: Z Motor: MoveAbsStepped took 290 ms)
17-03-17 23:05:57.358 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:05:57.358 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:05:57.358 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:05:57.358 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:05:57.358 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:05:57.358 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:05:57.358 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:05:57.358 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:05:57.358 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:05:57.358 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:05:57.358 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:05:57.358 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:05:57.358 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:05:57.368 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:05:57.368 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:05:57.368 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:05:57.368 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 23:05:57.368 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:05:57.368 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 23:05:57.368 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:05:57.378 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 466 466 224 224 28300 150\n [Camera]
17-03-17 23:05:57.578 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:05:58.048 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 661
17-03-17 23:05:58.048 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 661
17-03-17 23:05:58.048 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:05:58.048 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:05:58.048 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-17 23:05:58.048 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 661
17-03-17 23:05:58.048 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 661
17-03-17 23:05:58.048 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:05:58.048 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:05:58.048 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-17 23:05:58.238 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28300 851
17-03-17 23:05:58.378 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1001
17-03-17 23:05:58.418 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 23:05:58.418 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 23:05:58.418 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:05:58.428 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:05:58.428 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 23:05:58.428 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 23:05:58.428 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:05:58.428 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:05:58.428 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 23:05:58.428 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 23:05:58.608 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1225
17-03-17 23:05:58.608 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1225
17-03-17 23:05:58.608 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:05:58.608 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:05:58.608 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 23:05:58.608 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1225
17-03-17 23:05:58.608 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1225
17-03-17 23:05:58.608 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:05:58.608 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:05:58.608 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 23:05:58.798 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1418
17-03-17 23:05:58.798 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:05:58.798 -07 000000610 INF: FPGA: 'CAMDBLSNAP 466 466 224 224 28300 150' command took 2 ms to send, 1416 ms to get response, and 1424 ms overall
17-03-17 23:05:58.798 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:05:58.798 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.35009765625, Z-Position -0.128751918341126. ------
17-03-17 23:05:58.808 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13533 mm
17-03-17 23:05:58.808 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:05:58.808 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:05:58.808 -07 000000448 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 23:05:58.808 -07 000000448 INF: Y Motor: Moving to 73.1926 mm, started at 72.3501 mm, delta = 0.8425 mm
17-03-17 23:05:58.808 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 29562, sync = True, waitForSettling = False)
17-03-17 23:05:58.808 -07 000000561 INF: Z Motor: Moving to -0.135326 mm, started at -0.128752 mm, distance = -6.57 um
17-03-17 23:05:58.808 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:05:58.818 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:05:58.818 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:05:58.818 -07 000000429 INF: FPGA: Recv YRDPOS 148173
17-03-17 23:05:58.828 -07 000000561 INF: FPGA: Xmit ZDACW 29562\n [Z Motor]
17-03-17 23:05:58.828 -07 000000448 INF: FPGA: 'YRDPOS' command took 3 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 23:05:58.828 -07 000000448 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:05:58.828 -07 000000448 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:05:58.828 -07 000000448 INF: Y Motor: Moving 1348 steps-27
17-03-17 23:05:58.828 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 23:05:58.838 -07 000000547 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:05:58.838 -07 000000561 INF: FPGA: 'ZDACW 29562' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 23:05:58.848 -07 000000448 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:05:58.858 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:05:58.858 -07 000000409 INF: FPGA: Recv ZDACR 29562
17-03-17 23:05:58.868 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:05:58.868 -07 000000561 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-17 23:05:58.998 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 23:05:58.998 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 23:05:58.998 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:05:58.998 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 23:05:58.998 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 23:05:58.998 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:05:59.008 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:05:59.008 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 23:05:59.008 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 23:05:59.008 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 23:05:59.038 -07 000000415 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:05:59.038 -07 000000547 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 219 ms overall
17-03-17 23:05:59.218 -07 000000541 INF: FPGA: Recv YMVTILE
17-03-17 23:05:59.218 -07 000000448 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 23:05:59.258 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:05:59.268 -07 000000627 INF: FPGA: Recv YRDPOS 149865
17-03-17 23:05:59.278 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:05:59.278 -07 000000448 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:05:59.278 -07 000000448 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-17 23:05:59.278 -07 000000448 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.843 mm, average velocity = 2.122 mm/sec
17-03-17 23:06:00.228 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:06:00.228 -07 000000593 INF: FPGA: Recv YRDPOS 149865
17-03-17 23:06:00.238 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:06:00.238 -07 000000448 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:06:00.258 -07 000000448 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:06:00.258 -07 000000448 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:06:00.258 -07 000000448 INF: Y Motor: Moved to 73.1763 after 1452 ms (table move)
17-03-17 23:06:00.258 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135326 mm (DAC = 29562)
17-03-17 23:06:00.258 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:06:00.268 -07 000000623 INF: FPGA: Recv ZSGSRD 30360
17-03-17 23:06:00.268 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 23:06:00.268 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:06:00.268 -07 000000501 INF: FPGA: Recv ZSGSRD 30355
17-03-17 23:06:00.278 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:06:00.278 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:06:00.278 -07 000000541 INF: FPGA: Recv ZSGSRD 30351
17-03-17 23:06:00.288 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:06:00.288 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:06:00.288 -07 000000482 INF: FPGA: Recv ZSGSRD 30361
17-03-17 23:06:00.298 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:06:00.298 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:06:00.298 -07 000000576 INF: FPGA: Recv ZSGSRD 30366
17-03-17 23:06:00.308 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:06:00.308 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:06:00.308 -07 000000448 INF: FPGA: Recv ZSGSRD 30360
17-03-17 23:06:00.318 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:06:00.318 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:06:00.318 -07 000000618 INF: FPGA: Recv ZSGSRD 30356
17-03-17 23:06:00.328 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:06:00.328 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:06:00.328 -07 000000593 INF: FPGA: Recv ZSGSRD 30354
17-03-17 23:06:00.338 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:06:00.338 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:06:00.338 -07 000000475 INF: FPGA: Recv ZSGSRD 30349
17-03-17 23:06:00.348 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:06:00.348 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:06:00.348 -07 000000429 INF: FPGA: Recv ZSGSRD 30355
17-03-17 23:06:00.358 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:06:00.358 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:06:00.358 -07 000000475 INF: FPGA: Recv ZPIEZORD 26329
17-03-17 23:06:00.368 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:06:00.368 -07 000000382 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.511 V. Piezo Error = -8.9 V.
17-03-17 23:06:00.368 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.3 um, Read 10 ADC samples: Avg = 30357 (-134.6 uncal um), Error = 0.8 uncal um, Median = 30356 (-134.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30349 (-134.5 uncal um), Max = 30366 (-134.6 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 23:06:00.368 -07 000000382 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30357, posNoise = 9, negNoise = 8
17-03-17 23:06:00.368 -07 000000382 INF: Z Motor: After move to -0.135326, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:06:00.368 -07 000000382 INF: Z Motor: Settle wait time = 1455 ms, measure time = 101 ms (allowed 150 ms), total time = 1556 ms
17-03-17 23:06:00.368 -07 000000382 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 23:06:00.418 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1609 ms
17-03-17 23:06:00.418 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:06:00.418 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:06:00.418 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:06:00.418 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:06:00.418 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:06:00.418 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:06:00.418 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:06:00.418 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 23:06:00.418 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:06:00.428 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:06:00.428 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:06:00.438 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 23:06:00.438 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 23:06:00.438 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:06:00.488 -07 000000409 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:06:00.678 -07 000000415 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:06:00.688 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:06:00.688 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:06:00.688 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2470426896, 0x0, 559484976) start.
17-03-17 23:06:00.718 -07 000000547 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:06:00.728 -07 000000482 INF: FPGA: Recv CAMSNAP
17-03-17 23:06:00.728 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 285 ms overall
17-03-17 23:06:00.808 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2470426896, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 23:06:00.808 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:06:00.808 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:06:00.808 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 23:06:00.828 -07 000000382 INF: Autofocus start
17-03-17 23:06:00.828 -07 000000382 INF: MeasureProfile start
17-03-17 23:06:00.828 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:06:00.828 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:06:00.838 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:06:00.838 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:06:00.838 -07 000000382 INF: MeasureProfile done
17-03-17 23:06:00.838 -07 000000382 INF: X=0  Z correction [um]=-0.02394831
17-03-17 23:06:00.838 -07 000000382 INF: Autofocus finished
17-03-17 23:06:01.038 -07 000000478 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:06:01.038 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:06:01.038 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.135343159998572. ----------
17-03-17 23:06:01.038 -07 000000610 INF: Cycle	71	Tile	17	Exposure Settings		A	466	G	224	T	224	C	466
17-03-17 23:06:01.048 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28069, sync = True, waitForSettling = True)
17-03-17 23:06:01.048 -07 000000610 INF: Z Motor: Moving to -0.128492 mm, started at -0.135343 mm, distance = 6.85 um
17-03-17 23:06:01.048 -07 000000610 INF: FPGA: Xmit ZDACW 28069\n [Z Motor]
17-03-17 23:06:01.048 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 23:06:01.058 -07 000000610 INF: FPGA: 'ZDACW 28069' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:06:01.058 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:06:01.058 -07 000000576 INF: FPGA: Recv ZDACR 28069
17-03-17 23:06:01.068 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:06:01.068 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:06:01.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:06:01.218 -07 000000551 INF: FPGA: Recv ZSGSRD 29288
17-03-17 23:06:01.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:06:01.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:06:01.228 -07 000000561 INF: FPGA: Recv ZSGSRD 29299
17-03-17 23:06:01.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:06:01.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:06:01.238 -07 000000618 INF: FPGA: Recv ZSGSRD 29292
17-03-17 23:06:01.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:06:01.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:06:01.248 -07 000000561 INF: FPGA: Recv ZSGSRD 29292
17-03-17 23:06:01.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:06:01.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:06:01.258 -07 000000551 INF: FPGA: Recv ZSGSRD 29294
17-03-17 23:06:01.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:06:01.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:06:01.268 -07 000000475 INF: FPGA: Recv ZSGSRD 29298
17-03-17 23:06:01.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:06:01.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:06:01.278 -07 000000409 INF: FPGA: Recv ZSGSRD 29286
17-03-17 23:06:01.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:06:01.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:06:01.288 -07 000000593 INF: FPGA: Recv ZSGSRD 29293
17-03-17 23:06:01.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:06:01.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:06:01.298 -07 000000576 INF: FPGA: Recv ZSGSRD 29294
17-03-17 23:06:01.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:06:01.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:06:01.308 -07 000000382 INF: FPGA: Recv ZSGSRD 29290
17-03-17 23:06:01.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:06:01.318 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:06:01.318 -07 000000415 INF: FPGA: Recv ZPIEZORD 24916
17-03-17 23:06:01.328 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:06:01.328 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.283 V. Piezo Error = -9.6 V.
17-03-17 23:06:01.328 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.5 um, Read 10 ADC samples: Avg = 29293 (-127.7 uncal um), Error = 0.8 uncal um, Median = 29292 (-127.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29286 (-127.7 uncal um), Max = 29299 (-127.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 23:06:01.328 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29293, posNoise = 6, negNoise = 7
17-03-17 23:06:01.328 -07 000000610 INF: Z Motor: After move to -0.128492, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:06:01.328 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 23:06:01.328 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:06:01.328 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:06:01.328 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:06:01.328 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:06:01.328 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:06:01.328 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:06:01.328 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:06:01.328 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:06:01.328 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:06:01.328 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:06:01.328 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 23:06:01.328 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:06:01.338 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:06:01.338 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:06:01.338 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:06:01.338 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:06:01.348 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 23:06:01.348 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 23:06:01.348 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 23:06:01.348 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 23:06:01.348 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 466 466 224 224 28246 150\n [Camera]
17-03-17 23:06:01.548 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:06:02.008 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 658
17-03-17 23:06:02.008 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 658
17-03-17 23:06:02.008 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:06:02.018 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:06:02.018 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 23:06:02.018 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 658
17-03-17 23:06:02.018 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 658
17-03-17 23:06:02.018 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:06:02.018 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:06:02.018 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 23:06:02.038 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:06:02.038 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 70. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1132, R2=1178, Total=2310. Warn if over 250 bubbles per interval.
17-03-17 23:06:02.088 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 71, FrontChillerTemperature: 3.994908,
17-03-17 23:06:02.208 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28246 851
17-03-17 23:06:02.358 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1001
17-03-17 23:06:02.398 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 23:06:02.398 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 23:06:02.398 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:06:02.398 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 23:06:02.398 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 23:06:02.398 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:06:02.398 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 23:06:02.398 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 23:06:02.408 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:06:02.408 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 23:06:02.578 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1225
17-03-17 23:06:02.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1225
17-03-17 23:06:02.578 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:06:02.578 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:06:02.578 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 23:06:02.578 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1225
17-03-17 23:06:02.578 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1225
17-03-17 23:06:02.578 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:06:02.578 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:06:02.578 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 23:06:02.768 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1417
17-03-17 23:06:02.768 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:06:02.768 -07 000000610 INF: FPGA: 'CAMDBLSNAP 466 466 224 224 28246 150' command took 2 ms to send, 1417 ms to get response, and 1424 ms overall
17-03-17 23:06:02.768 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:06:02.778 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17626953125, Z-Position -0.128507798279739. ------
17-03-17 23:06:02.778 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:06:02.778 -07 000000448 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13482 mm
17-03-17 23:06:02.778 -07 000000448 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:06:02.778 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:06:02.778 -07 000000541 INF: Z Motor: Entering MoveAbsStepped (DAC = 29452, sync = True, waitForSettling = False)
17-03-17 23:06:02.778 -07 000000541 INF: Z Motor: Moving to -0.134823 mm, started at -0.128508 mm, distance = -6.31 um
17-03-17 23:06:02.778 -07 000000486 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 23:06:02.778 -07 000000486 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-17 23:06:02.788 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:06:02.788 -07 000000541 INF: FPGA: Xmit ZDACW 29452\n [Z Motor]
17-03-17 23:06:02.788 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 23:06:02.798 -07 000000541 INF: FPGA: 'ZDACW 29452' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 23:06:02.798 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:06:02.798 -07 000000551 INF: FPGA: Recv YRDPOS 149865
17-03-17 23:06:02.808 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:06:02.808 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 23:06:02.808 -07 000000486 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:06:02.808 -07 000000486 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:06:02.808 -07 000000486 INF: Y Motor: Moving 1354 steps-33
17-03-17 23:06:02.818 -07 000000541 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:06:02.818 -07 000000462 INF: FPGA: Recv ZDACR 29452
17-03-17 23:06:02.828 -07 000000541 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:06:02.828 -07 000000541 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 23:06:02.828 -07 000000486 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:06:02.958 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 23:06:02.958 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 23:06:02.958 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:06:02.958 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 23:06:02.958 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 23:06:02.958 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:06:02.968 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:06:02.968 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 23:06:02.968 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 23:06:02.968 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 23:06:03.008 -07 000000576 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:06:03.008 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 23:06:03.198 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-17 23:06:03.198 -07 000000486 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 23:06:03.238 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:06:03.238 -07 000000576 INF: FPGA: Recv YRDPOS 151569
17-03-17 23:06:03.248 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:06:03.248 -07 000000486 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:06:03.248 -07 000000486 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 23:06:03.248 -07 000000486 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.846 mm, average velocity = 2.132 mm/sec
17-03-17 23:06:04.198 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:06:04.198 -07 000000547 INF: FPGA: Recv YRDPOS 151569
17-03-17 23:06:04.208 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:06:04.208 -07 000000486 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:06:04.218 -07 000000486 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:06:04.218 -07 000000486 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:06:04.218 -07 000000486 INF: Y Motor: Moved to 74.0083 after 1440 ms (table move)
17-03-17 23:06:04.228 -07 000000448 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134823 mm (DAC = 29452)
17-03-17 23:06:04.228 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:06:04.228 -07 000000551 INF: FPGA: Recv ZSGSRD 30275
17-03-17 23:06:04.238 -07 000000448 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:06:04.238 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:06:04.238 -07 000000576 INF: FPGA: Recv ZSGSRD 30271
17-03-17 23:06:04.248 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:06:04.248 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:06:04.248 -07 000000486 INF: FPGA: Recv ZSGSRD 30279
17-03-17 23:06:04.258 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:06:04.258 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:06:04.258 -07 000000478 INF: FPGA: Recv ZSGSRD 30279
17-03-17 23:06:04.268 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:06:04.268 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:06:04.268 -07 000000593 INF: FPGA: Recv ZSGSRD 30275
17-03-17 23:06:04.278 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:06:04.278 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:06:04.278 -07 000000462 INF: FPGA: Recv ZSGSRD 30283
17-03-17 23:06:04.288 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:06:04.288 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:06:04.288 -07 000000409 INF: FPGA: Recv ZSGSRD 30277
17-03-17 23:06:04.298 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:06:04.298 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:06:04.298 -07 000000618 INF: FPGA: Recv ZSGSRD 30273
17-03-17 23:06:04.308 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:06:04.308 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:06:04.308 -07 000000475 INF: FPGA: Recv ZSGSRD 30273
17-03-17 23:06:04.318 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:06:04.318 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:06:04.318 -07 000000561 INF: FPGA: Recv ZSGSRD 30275
17-03-17 23:06:04.328 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:06:04.328 -07 000000448 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:06:04.328 -07 000000501 INF: FPGA: Recv ZPIEZORD 26237
17-03-17 23:06:04.338 -07 000000448 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:06:04.338 -07 000000448 INF: Z Motor: Piezo is near 36.0 V (nominally 0 to 100 V), expect near 44.9 V, since DAC is at 4.494 V. Piezo Error = -8.9 V.
17-03-17 23:06:04.338 -07 000000448 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.8 um, Read 10 ADC samples: Avg = 30276 (-134.0 uncal um), Error = 0.8 uncal um, Median = 30275 (-134.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30271 (-134.0 uncal um), Max = 30283 (-134.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:06:04.338 -07 000000448 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30276, posNoise = 7, negNoise = 5
17-03-17 23:06:04.338 -07 000000448 INF: Z Motor: After move to -0.134823, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:06:04.338 -07 000000448 INF: Z Motor: Settle wait time = 1443 ms, measure time = 109 ms (allowed 150 ms), total time = 1552 ms
17-03-17 23:06:04.338 -07 000000448 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 23:06:04.388 -07 000000448 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1606 ms
17-03-17 23:06:04.388 -07 000000448 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:06:04.388 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:06:04.388 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:06:04.388 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:06:04.388 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:06:04.388 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:06:04.388 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:06:04.388 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:06:04.388 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:06:04.398 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:06:04.398 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:06:04.408 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 23:06:04.408 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 23:06:04.408 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:06:04.448 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:06:04.648 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:06:04.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:06:04.648 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:06:04.648 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2539065104, 0x0, 559484976) start.
17-03-17 23:06:04.688 -07 000000409 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:06:04.688 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-17 23:06:04.688 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 23:06:04.778 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2539065104, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 23:06:04.778 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:06:04.778 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:06:04.778 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 23:06:04.888 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:06:04.888 -07 000000541 INF: Autofocus start
17-03-17 23:06:04.888 -07 000000541 INF: MeasureProfile start
17-03-17 23:06:04.888 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:06:04.898 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:06:04.898 -07 000000448 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:06:04.898 -07 000000541 INF: MeasureProfile done
17-03-17 23:06:04.898 -07 000000541 INF: X=29  Z correction [um]=0.1155529
17-03-17 23:06:04.898 -07 000000541 INF: Autofocus finished
17-03-17 23:06:05.098 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:06:05.098 -07 000000448 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:06:05.098 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.13482279881509. ----------
17-03-17 23:06:05.098 -07 000000610 INF: Cycle	71	Tile	18	Exposure Settings		A	466	G	224	T	224	C	466
17-03-17 23:06:05.108 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27990, sync = True, waitForSettling = True)
17-03-17 23:06:05.108 -07 000000610 INF: Z Motor: Moving to -0.128130 mm, started at -0.134823 mm, distance = 6.69 um
17-03-17 23:06:05.108 -07 000000610 INF: FPGA: Xmit ZDACW 27990\n [Z Motor]
17-03-17 23:06:05.108 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 23:06:05.118 -07 000000610 INF: FPGA: 'ZDACW 27990' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:06:05.118 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:06:05.118 -07 000000502 INF: FPGA: Recv ZDACR 27990
17-03-17 23:06:05.128 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:06:05.128 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:06:05.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:06:05.278 -07 000000593 INF: FPGA: Recv ZSGSRD 29237
17-03-17 23:06:05.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:06:05.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:06:05.288 -07 000000576 INF: FPGA: Recv ZSGSRD 29237
17-03-17 23:06:05.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:06:05.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:06:05.298 -07 000000593 INF: FPGA: Recv ZSGSRD 29236
17-03-17 23:06:05.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:06:05.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:06:05.308 -07 000000475 INF: FPGA: Recv ZSGSRD 29237
17-03-17 23:06:05.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:06:05.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:06:05.318 -07 000000482 INF: FPGA: Recv ZSGSRD 29232
17-03-17 23:06:05.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:06:05.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:06:05.328 -07 000000475 INF: FPGA: Recv ZSGSRD 29233
17-03-17 23:06:05.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:06:05.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:06:05.338 -07 000000448 INF: FPGA: Recv ZSGSRD 29238
17-03-17 23:06:05.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:06:05.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:06:05.348 -07 000000618 INF: FPGA: Recv ZSGSRD 29239
17-03-17 23:06:05.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:06:05.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:06:05.358 -07 000000486 INF: FPGA: Recv ZSGSRD 29230
17-03-17 23:06:05.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:06:05.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:06:05.368 -07 000000478 INF: FPGA: Recv ZSGSRD 29229
17-03-17 23:06:05.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:06:05.378 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:06:05.378 -07 000000409 INF: FPGA: Recv ZPIEZORD 24845
17-03-17 23:06:05.388 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:06:05.388 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.271 V. Piezo Error = -9.6 V.
17-03-17 23:06:05.388 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.1 um, Read 10 ADC samples: Avg = 29235 (-127.4 uncal um), Error = 0.8 uncal um, Median = 29236 (-127.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29229 (-127.3 uncal um), Max = 29239 (-127.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:06:05.388 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29235, posNoise = 4, negNoise = 6
17-03-17 23:06:05.388 -07 000000610 INF: Z Motor: After move to -0.128130, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:06:05.388 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 23:06:05.388 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:06:05.388 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:06:05.388 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:06:05.388 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:06:05.388 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:06:05.388 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:06:05.388 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:06:05.388 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:06:05.388 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 23:06:05.388 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:06:05.388 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:06:05.388 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:06:05.398 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:06:05.398 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:06:05.398 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:06:05.398 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:06:05.398 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 23:06:05.398 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 23:06:05.408 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 23:06:05.408 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 23:06:05.408 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 466 466 224 224 28167 150\n [Camera]
17-03-17 23:06:05.608 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:06:06.068 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 658
17-03-17 23:06:06.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 658
17-03-17 23:06:06.078 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:06:06.078 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:06:06.078 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 23:06:06.078 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 658
17-03-17 23:06:06.078 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 658
17-03-17 23:06:06.078 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:06:06.078 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:06:06.078 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 23:06:06.268 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28167 851
17-03-17 23:06:06.418 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1001
17-03-17 23:06:06.458 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 23:06:06.458 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 23:06:06.458 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:06:06.458 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:06:06.458 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 23:06:06.458 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 23:06:06.458 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:06:06.468 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 23:06:06.468 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 23:06:06.468 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 23:06:06.638 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1225
17-03-17 23:06:06.638 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1225
17-03-17 23:06:06.638 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:06:06.638 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:06:06.638 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 23:06:06.648 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1225
17-03-17 23:06:06.648 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1225
17-03-17 23:06:06.648 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:06:06.648 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:06:06.648 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-17 23:06:06.828 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1418
17-03-17 23:06:06.828 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:06:06.828 -07 000000610 INF: FPGA: 'CAMDBLSNAP 466 466 224 224 28167 150' command took 2 ms to send, 1419 ms to get response, and 1427 ms overall
17-03-17 23:06:06.838 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:06:06.838 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00830078125, Z-Position -0.128135193975517. ------
17-03-17 23:06:06.838 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:06:06.838 -07 000000475 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13460 mm
17-03-17 23:06:06.838 -07 000000475 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:06:06.838 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 23:06:06.838 -07 000000382 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-17 23:06:06.848 -07 000000429 INF: Z Motor: Entering MoveAbsStepped (DAC = 29404, sync = True, waitForSettling = False)
17-03-17 23:06:06.848 -07 000000429 INF: Z Motor: Moving to -0.134603 mm, started at -0.128135 mm, distance = -6.47 um
17-03-17 23:06:06.848 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:06:06.848 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:06:06.848 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:06:06.848 -07 000000501 INF: FPGA: Recv YRDPOS 151570
17-03-17 23:06:06.858 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:06:06.858 -07 000000382 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:06:06.858 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:06:06.858 -07 000000382 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:06:06.858 -07 000000382 INF: Y Motor: Moving 1350 steps-29
17-03-17 23:06:06.868 -07 000000429 INF: FPGA: Xmit ZDACW 29404\n [Z Motor]
17-03-17 23:06:06.868 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 23:06:06.878 -07 000000429 INF: FPGA: 'ZDACW 29404' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:06:06.878 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:06:06.888 -07 000000429 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:06:06.888 -07 000000486 INF: FPGA: Recv ZDACR 29404
17-03-17 23:06:06.898 -07 000000429 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:06:06.898 -07 000000429 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-17 23:06:07.028 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 23:06:07.028 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 23:06:07.028 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:06:07.038 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 23:06:07.038 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 23:06:07.038 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:06:07.038 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:06:07.038 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 70. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1132, R2=1178, Total=2310. Warn if over 250 bubbles per interval.
17-03-17 23:06:07.038 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:06:07.038 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 23:06:07.038 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 23:06:07.048 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 23:06:07.058 -07 000000409 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:06:07.058 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 211 ms overall
17-03-17 23:06:07.248 -07 000000547 INF: FPGA: Recv YMVTILE
17-03-17 23:06:07.248 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 23:06:07.278 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:06:07.278 -07 000000486 INF: FPGA: Recv YRDPOS 153256
17-03-17 23:06:07.288 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:06:07.288 -07 000000382 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:06:07.288 -07 000000382 INF: Y Motor: Position error before settling (table move) = -42 encoder counts (-0.021 mm)
17-03-17 23:06:07.288 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.844 mm, average velocity = 2.143 mm/sec
17-03-17 23:06:07.458 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 71, FrontChillerTemperature: 3.973092,
17-03-17 23:06:08.238 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:06:08.238 -07 000000618 INF: FPGA: Recv YRDPOS 153256
17-03-17 23:06:08.248 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:06:08.248 -07 000000382 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:06:08.258 -07 000000382 INF: Y Motor: After move to 74.852608, error = -0.020576, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:06:08.258 -07 000000382 INF: Y Motor: Position error after settling (table move) = -42 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:06:08.258 -07 000000382 INF: Y Motor: Moved to 74.8320 after 1417 ms (table move)
17-03-17 23:06:08.268 -07 000000475 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134603 mm (DAC = 29404)
17-03-17 23:06:08.268 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:06:08.268 -07 000000415 INF: FPGA: Recv ZSGSRD 30241
17-03-17 23:06:08.278 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:06:08.278 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:06:08.278 -07 000000501 INF: FPGA: Recv ZSGSRD 30242
17-03-17 23:06:08.288 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:06:08.288 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:06:08.288 -07 000000502 INF: FPGA: Recv ZSGSRD 30236
17-03-17 23:06:08.298 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:06:08.298 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:06:08.298 -07 000000429 INF: FPGA: Recv ZSGSRD 30237
17-03-17 23:06:08.308 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:06:08.308 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:06:08.308 -07 000000486 INF: FPGA: Recv ZSGSRD 30239
17-03-17 23:06:08.318 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:06:08.318 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:06:08.318 -07 000000478 INF: FPGA: Recv ZSGSRD 30245
17-03-17 23:06:08.328 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:06:08.328 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:06:08.328 -07 000000482 INF: FPGA: Recv ZSGSRD 30254
17-03-17 23:06:08.338 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:06:08.338 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:06:08.338 -07 000000547 INF: FPGA: Recv ZSGSRD 30248
17-03-17 23:06:08.348 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:06:08.348 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:06:08.348 -07 000000448 INF: FPGA: Recv ZSGSRD 30236
17-03-17 23:06:08.358 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:06:08.358 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:06:08.358 -07 000000551 INF: FPGA: Recv ZSGSRD 30235
17-03-17 23:06:08.368 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:06:08.368 -07 000000475 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:06:08.368 -07 000000502 INF: FPGA: Recv ZPIEZORD 26212
17-03-17 23:06:08.378 -07 000000475 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:06:08.378 -07 000000475 INF: Z Motor: Piezo is near 36.0 V (nominally 0 to 100 V), expect near 44.9 V, since DAC is at 4.487 V. Piezo Error = -8.9 V.
17-03-17 23:06:08.378 -07 000000475 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.6 um, Read 10 ADC samples: Avg = 30241 (-133.8 uncal um), Error = 0.8 uncal um, Median = 30240 (-133.8 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 30235 (-133.8 uncal um), Max = 30254 (-133.9 uncal um), Pos Noise = 13 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:06:08.378 -07 000000475 INF: Z Motor: ADC noise = 13, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30241, posNoise = 13, negNoise = 6
17-03-17 23:06:08.378 -07 000000475 INF: Z Motor: After move to -0.134603, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:06:08.378 -07 000000475 INF: Z Motor: Settle wait time = 1420 ms, measure time = 110 ms (allowed 150 ms), total time = 1530 ms
17-03-17 23:06:08.378 -07 000000475 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 23:06:08.418 -07 000000475 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1575 ms
17-03-17 23:06:08.418 -07 000000475 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:06:08.418 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:06:08.418 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:06:08.418 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:06:08.418 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:06:08.418 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:06:08.418 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:06:08.428 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:06:08.428 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:06:08.428 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:06:08.428 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:06:08.438 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 23:06:08.438 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 23:06:08.438 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:06:08.488 -07 000000448 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:06:08.688 -07 000000623 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:06:08.688 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:06:08.688 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:06:08.688 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2671610696, 0x0, 559484976) start.
17-03-17 23:06:08.728 -07 000000482 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:06:08.728 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 23:06:08.728 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 288 ms overall
17-03-17 23:06:08.798 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2671610696, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 23:06:08.798 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:06:08.808 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 23:06:08.808 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 23:06:08.828 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:06:08.828 -07 000000486 INF: Autofocus start
17-03-17 23:06:08.828 -07 000000486 INF: MeasureProfile start
17-03-17 23:06:08.838 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:06:08.838 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:06:08.838 -07 000000541 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:06:08.848 -07 000000486 INF: MeasureProfile done
17-03-17 23:06:08.848 -07 000000486 INF: X=-64  Z correction [um]=-0.3149434
17-03-17 23:06:08.848 -07 000000486 INF: Autofocus finished
17-03-17 23:06:09.038 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:06:09.038 -07 000000541 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 23:06:09.038 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83203125, Z-position -0.134597951390128. ----------
17-03-17 23:06:09.038 -07 000000610 INF: Cycle	71	Tile	19	Exposure Settings		A	466	G	224	T	224	C	466
17-03-17 23:06:09.048 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27848, sync = True, waitForSettling = True)
17-03-17 23:06:09.048 -07 000000610 INF: Z Motor: Moving to -0.127480 mm, started at -0.134598 mm, distance = 7.12 um
17-03-17 23:06:09.048 -07 000000610 INF: FPGA: Xmit ZDACW 27848\n [Z Motor]
17-03-17 23:06:09.048 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 23:06:09.058 -07 000000610 INF: FPGA: 'ZDACW 27848' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:06:09.058 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:06:09.058 -07 000000382 INF: FPGA: Recv ZDACR 27848
17-03-17 23:06:09.068 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:06:09.068 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:06:09.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:06:09.218 -07 000000475 INF: FPGA: Recv ZSGSRD 29135
17-03-17 23:06:09.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:06:09.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:06:09.228 -07 000000409 INF: FPGA: Recv ZSGSRD 29135
17-03-17 23:06:09.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:06:09.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:06:09.238 -07 000000462 INF: FPGA: Recv ZSGSRD 29134
17-03-17 23:06:09.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:06:09.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:06:09.248 -07 000000561 INF: FPGA: Recv ZSGSRD 29131
17-03-17 23:06:09.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:06:09.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:06:09.258 -07 000000502 INF: FPGA: Recv ZSGSRD 29140
17-03-17 23:06:09.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:06:09.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:06:09.268 -07 000000551 INF: FPGA: Recv ZSGSRD 29135
17-03-17 23:06:09.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:06:09.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:06:09.278 -07 000000541 INF: FPGA: Recv ZSGSRD 29139
17-03-17 23:06:09.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:06:09.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:06:09.288 -07 000000478 INF: FPGA: Recv ZSGSRD 29134
17-03-17 23:06:09.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:06:09.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:06:09.298 -07 000000561 INF: FPGA: Recv ZSGSRD 29135
17-03-17 23:06:09.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:06:09.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:06:09.308 -07 000000475 INF: FPGA: Recv ZSGSRD 29137
17-03-17 23:06:09.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:06:09.318 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:06:09.318 -07 000000448 INF: FPGA: Recv ZPIEZORD 24730
17-03-17 23:06:09.328 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:06:09.328 -07 000000610 INF: Z Motor: Piezo is near 32.8 V (nominally 0 to 100 V), expect near 42.5 V, since DAC is at 4.249 V. Piezo Error = -9.7 V.
17-03-17 23:06:09.328 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.5 um, Read 10 ADC samples: Avg = 29136 (-126.7 uncal um), Error = 0.8 uncal um, Median = 29135 (-126.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29131 (-126.7 uncal um), Max = 29140 (-126.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:06:09.328 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29136, posNoise = 4, negNoise = 5
17-03-17 23:06:09.328 -07 000000610 INF: Z Motor: After move to -0.127480, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:06:09.328 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 23:06:09.328 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:06:09.328 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:06:09.328 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:06:09.328 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:06:09.328 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:06:09.328 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:06:09.328 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:06:09.328 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:06:09.328 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:06:09.328 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:06:09.328 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 23:06:09.328 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:06:09.338 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:06:09.338 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:06:09.338 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:06:09.338 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:06:09.348 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 23:06:09.348 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 23:06:09.348 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 17 ms.
17-03-17 23:06:09.348 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 24 ms.
17-03-17 23:06:09.358 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 466 466 224 224 28025 150\n [Camera]
17-03-17 23:06:09.558 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:06:10.018 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 658
17-03-17 23:06:10.018 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 658
17-03-17 23:06:10.018 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:06:10.018 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:06:10.018 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start.
17-03-17 23:06:10.028 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 658
17-03-17 23:06:10.028 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 658
17-03-17 23:06:10.028 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:06:10.028 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:06:10.028 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) start.
17-03-17 23:06:10.218 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28025 851
17-03-17 23:06:10.358 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1001
17-03-17 23:06:10.418 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 23:06:10.418 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 23:06:10.418 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:06:10.418 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 23:06:10.418 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 23:06:10.418 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:06:10.428 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:06:10.428 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 23:06:10.428 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:06:10.438 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 23:06:10.588 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1225
17-03-17 23:06:10.588 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1225
17-03-17 23:06:10.588 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:06:10.718 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1225
17-03-17 23:06:10.718 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1225
17-03-17 23:06:10.718 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:06:10.718 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:06:10.718 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) start.
17-03-17 23:06:10.728 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:06:10.728 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-17 23:06:10.778 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1418
17-03-17 23:06:10.778 -07 000000482 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:06:10.778 -07 000000610 INF: FPGA: 'CAMDBLSNAP 466 466 224 224 28025 150' command took 2 ms to send, 1416 ms to get response, and 1425 ms overall
17-03-17 23:06:11.118 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 23:06:11.118 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 23:06:11.118 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:06:11.128 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 23:06:11.128 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 23:06:11.128 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:06:11.128 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:06:11.128 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:06:11.128 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 537 ms.
17-03-17 23:06:11.128 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 23:06:11.128 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 23:06:11.168 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 43 ms.
17-03-17 23:06:11.168 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 23:06:11.218 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-17 23:06:11.228 -07 000000610 INF: Enabling Skipping AutoFocus in the next 4 cycles.
17-03-17 23:06:11.228 -07 000000610 INF: Imaging Cycle 71: ScanTilesCommand Cycle 71 time end. Duration was 160977 ms.
17-03-17 23:06:11.228 -07 000000610 INF: =================== Cycle #71 ===================
17-03-17 23:06:11.228 -07 000000610 INF: ===================  ===================
17-03-17 23:06:11.238 -07 000000475 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 23:06:11.238 -07 000000551 INF: FPGA: Recv EXLED1ADCR 26
17-03-17 23:06:11.248 -07 000000475 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:06:11.248 -07 000000475 INF: GreenLED: Using Green data: Photodiode ADC 26 --> 0.0 mW (old method), or 1.9 mW (new method). Difference = 1.9 mW
17-03-17 23:06:11.248 -07 000000475 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 71, FrontChillerTemperature: 3.973092, FrontChillerHeatSinkTemperature: 0.630158, AmbientTemperature: 18.83269, FlowCellCompartmentTemperature: 22.00126, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.59584, GreenLEDSensorTemperature: 26.30499, PhotodiodePowerAdcGreen: 26, PhotodiodePowerMwGreen: 1.927049
17-03-17 23:06:11.288 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.