17-03-17 23:06:11.338 -07 000000610 INF: =================== Cycle #72 ===================
17-03-17 23:06:11.338 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-17 23:06:11.338 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8320 mm, delta = 0.5485 mm
17-03-17 23:06:11.338 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:06:11.348 -07 000000618 INF: FPGA: Recv YRDPOS 153257
17-03-17 23:06:11.348 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 5 ms overall
17-03-17 23:06:11.348 -07 000000610 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:06:11.348 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-17 23:06:11.348 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-17 23:06:11.348 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-17 23:06:11.468 -07 000000486 INF: FPGA: Recv YMVTO 154377 872
17-03-17 23:06:11.468 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 113 ms to get response, and 117 ms overall
17-03-17 23:06:11.468 -07 000000610 INF: Y Motor: Position error before settling = -2 encoder counts (-0.001 mm)
17-03-17 23:06:11.468 -07 000000610 INF: Y Motor: To move from 74.833 to 75.381 (0.549 mm) should take 877 steps, but required 872 steps (0.545 mm). Slippage = -0.003 mm (-0.01%).
17-03-17 23:06:11.468 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 117 ms, distance = 0.549 mm, average velocity = 4.688 mm/sec
17-03-17 23:06:12.038 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:06:12.038 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 71. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1132, R2=1178, Total=2310. Warn if over 250 bubbles per interval.
17-03-17 23:06:12.838 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 72, FrontChillerTemperature: 3.975845,
17-03-17 23:06:14.468 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:06:14.468 -07 000000541 INF: FPGA: Recv YRDPOS 154381
17-03-17 23:06:14.478 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:06:14.478 -07 000000610 INF: Y Motor: Encoder = 154381 = motor step 120610.2 = 75.3813 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:06:14.498 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.000768, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:06:14.498 -07 000000610 INF: Y Motor: Position error after settling = 2 encoder counts (0.001 mm), Delta during settling = 4 counts (0.002 mm)
17-03-17 23:06:14.498 -07 000000610 INF: Y Motor: Moved to 75.3813 after 3153 ms
17-03-17 23:06:14.498 -07 000000610 INF: =================== Cycle #72, Flow Cell Temp 60° ===================
17-03-17 23:06:14.498 -07 000000610 INF: =================== Cycle #72, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-17 23:06:14.498 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-17 23:06:14.508 -07 000000561 INF: FPGA: Recv TEC2TEMP 
17-03-17 23:06:14.508 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 23:06:14.508 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 23:06:14.508 -07 000000486 INF: FPGA: Recv TEC2EN 
17-03-17 23:06:14.518 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:06:14.518 -07 000000610 INF: =================== Cycle #72, Flow Cell Temp 60° ===================
17-03-17 23:06:14.518 -07 000000610 INF: =================== Cycle #72 ===================
17-03-17 23:06:14.518 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 23:06:14.518 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:06:14.548 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 23:06:14.548 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-17 23:06:14.548 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 23:06:14.848 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 23:06:14.868 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 23:06:14.868 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 23:06:14.918 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:06:14.938 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 23:06:14.938 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 23:06:15.038 -07 000000610 INF: =================== Cycle #72, Pumping Reagent PR2 (3) ===================
17-03-17 23:06:15.038 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 23:06:15.038 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:06:15.068 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 23:06:15.068 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 23:06:15.068 -07 000000610 INF: =================== Cycle #72, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 23:06:15.198 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 23:06:15.238 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:06:17.038 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:06:17.038 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 71. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1132, R2=1178, Total=2310. Warn if over 250 bubbles per interval.
17-03-17 23:06:18.198 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 72, FrontChillerTemperature: 4.008536,
17-03-17 23:06:18.368 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:06:18.398 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:06:18.818 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:06:18.848 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:06:19.268 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:06:19.298 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:06:19.298 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 23:06:19.298 -07 000000610 INF: =================== Cycle #72, Pumping Reagent PR2 (3) ===================
17-03-17 23:06:19.428 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:06:19.458 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 23:06:19.458 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 23:06:19.588 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:06:19.618 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 23:06:19.618 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 23:06:19.618 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 23:06:19.748 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 23:06:19.778 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:06:20.208 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:06:20.238 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:06:20.238 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 23:06:20.238 -07 000000610 INF: =================== Cycle #72 ===================
17-03-17 23:06:21.458 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 23:06:21.458 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-17 23:06:21.458 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:06:21.478 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 23:06:21.478 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-17 23:06:21.478 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-17 23:06:21.608 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 23:06:21.628 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-17 23:06:21.628 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-17 23:06:21.678 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:06:21.698 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 23:06:21.698 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 23:06:21.798 -07 000000610 INF: =================== Cycle #72, Pumping Reagent CMS (4) ===================
17-03-17 23:06:21.798 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 23:06:21.798 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:06:21.828 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 23:06:21.828 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 23:06:21.828 -07 000000610 INF: =================== Cycle #72, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-17 23:06:21.958 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 23:06:21.998 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:06:22.038 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-17 23:06:22.038 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 71. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1133, R2=1179, Total=2312. Warn if over 250 bubbles per interval.
17-03-17 23:06:23.438 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:06:23.468 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:06:23.578 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 72, FrontChillerTemperature: 4.031682,
17-03-17 23:06:23.888 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:06:23.918 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:06:23.918 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 23:06:23.918 -07 000000610 INF: =================== Cycle #72, Pumping Reagent CMS (4) ===================
17-03-17 23:06:24.048 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:06:24.078 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 23:06:24.078 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 23:06:24.208 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:06:24.238 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 23:06:24.238 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 23:06:24.238 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 23:06:24.368 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 23:06:24.398 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:06:24.828 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:06:24.858 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:06:24.858 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 23:06:24.858 -07 000000610 INF: =================== Cycle #72 ===================
17-03-17 23:06:26.078 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-17 23:06:26.078 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 23:06:26.078 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:06:26.098 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 23:06:26.098 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-17 23:06:26.098 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-17 23:06:26.248 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 23:06:26.268 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-17 23:06:26.268 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-17 23:06:26.318 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:06:26.338 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 23:06:26.338 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 23:06:26.438 -07 000000610 INF: =================== Cycle #72, Pumping Reagent PR2 (3) ===================
17-03-17 23:06:26.438 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 23:06:26.438 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:06:26.468 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 23:06:26.468 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 23:06:26.468 -07 000000610 INF: =================== Cycle #72, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 23:06:26.598 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 23:06:26.638 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:06:27.038 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 1
17-03-17 23:06:27.038 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 71. Bubbles during last 5000 ms interval: R1=1, R2=0, Total=1. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1134, R2=1179, Total=2313. Warn if over 250 bubbles per interval.
17-03-17 23:06:27.508 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:06:27.538 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:06:27.538 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 23:06:27.538 -07 000000610 INF: =================== Cycle #72, Pumping Reagent PR2 (3) ===================
17-03-17 23:06:27.668 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:06:27.698 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 23:06:27.698 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 23:06:27.828 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:06:27.858 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 23:06:27.858 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 23:06:27.858 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 23:06:27.988 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 23:06:28.018 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:06:28.448 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:06:28.478 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:06:28.478 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 23:06:28.478 -07 000000610 INF: =================== Cycle #72 ===================
17-03-17 23:06:28.478 -07 000000541 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 23:06:28.478 -07 000000475 INF: WaitCommand(10000) start
17-03-17 23:06:28.478 -07 000000541 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 23:06:28.938 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 72, FrontChillerTemperature: 4.030322,
17-03-17 23:06:29.698 -07 000000541 INF: AsyncDelayTimer waited 1214ms
17-03-17 23:06:29.698 -07 000000541 INF: LanePump: Xmit /1?\r
17-03-17 23:06:29.728 -07 000000541 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 23:06:29.728 -07 000000541 INF: LanePump: Current Position of Pump is: 1110
17-03-17 23:06:29.858 -07 000000541 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 23:06:29.898 -07 000000541 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:06:31.428 -07 000000541 INF: LanePump: Xmit /1Q\r
17-03-17 23:06:31.458 -07 000000541 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:06:31.878 -07 000000541 INF: LanePump: Xmit /1Q\r
17-03-17 23:06:31.908 -07 000000541 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:06:31.908 -07 000000541 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 23:06:31.908 -07 000000541 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 23:06:31.908 -07 000000541 INF: ===================  ===================
17-03-17 23:06:32.038 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-17 23:06:32.038 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 71. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1135, R2=1180, Total=2315. Warn if over 250 bubbles per interval.
17-03-17 23:06:34.308 -07 000000409 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 72, FrontChillerTemperature: 4.005817,
17-03-17 23:06:37.038 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 23:06:37.038 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 71. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1135, R2=1181, Total=2316. Warn if over 250 bubbles per interval.
17-03-17 23:06:38.488 -07 000000475 INF: WaitCommand(10000) end
17-03-17 23:06:38.488 -07 000000610 INF: =================== Cycle #72, Pumping Reagent PR2 (3) ===================
17-03-17 23:06:38.488 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-17 23:06:38.488 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:06:38.518 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 23:06:38.518 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 23:06:38.518 -07 000000610 INF: =================== Cycle #72, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 23:06:38.648 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-17 23:06:38.688 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:06:39.678 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 72, FrontChillerTemperature: 3.959467,
17-03-17 23:06:42.038 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 2
17-03-17 23:06:42.038 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 71. Bubbles during last 5000 ms interval: R1=2, R2=2, Total=4. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1137, R2=1183, Total=2320. Warn if over 250 bubbles per interval.
17-03-17 23:06:44.818 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:06:44.848 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:06:45.048 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 72, FrontChillerTemperature: 3.98264,
17-03-17 23:06:45.268 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:06:45.298 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:06:45.718 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:06:45.748 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:06:46.168 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:06:46.198 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:06:46.618 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:06:46.648 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:06:46.648 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-17 23:06:46.648 -07 000000610 INF: =================== Cycle #72, Pumping Reagent PR2 (3) ===================
17-03-17 23:06:46.778 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:06:46.808 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 23:06:46.808 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 23:06:46.938 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:06:46.968 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 23:06:46.968 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 23:06:46.968 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 23:06:47.038 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 6 R1 6
17-03-17 23:06:47.038 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 71. Bubbles during last 5000 ms interval: R1=6, R2=6, Total=12. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1143, R2=1189, Total=2332. Warn if over 250 bubbles per interval.
17-03-17 23:06:47.098 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 23:06:47.128 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:06:47.558 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:06:47.588 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:06:47.588 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 23:06:47.588 -07 000000610 INF: =================== Cycle #72 ===================
17-03-17 23:06:48.808 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-17 23:06:48.808 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-17 23:06:48.808 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:06:48.828 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 23:06:48.828 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-17 23:06:48.828 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-17 23:06:49.038 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 23:06:49.058 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-17 23:06:49.058 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-17 23:06:49.108 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:06:49.128 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 23:06:49.128 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 23:06:49.228 -07 000000610 INF: =================== Cycle #72, Pumping Reagent IMT (1) ===================
17-03-17 23:06:49.228 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 23:06:49.228 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:06:49.258 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 23:06:49.258 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 23:06:49.258 -07 000000610 INF: =================== Cycle #72, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-17 23:06:49.388 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 23:06:49.428 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:06:50.418 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 72, FrontChillerTemperature: 4.000345,
17-03-17 23:06:50.868 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:06:50.898 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:06:51.318 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:06:51.348 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:06:51.348 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 23:06:51.348 -07 000000610 INF: =================== Cycle #72, Pumping Reagent IMT (1) ===================
17-03-17 23:06:51.478 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:06:51.508 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 23:06:51.508 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 23:06:51.638 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:06:51.668 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 23:06:51.668 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 23:06:51.668 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 23:06:51.798 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 23:06:51.828 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:06:52.038 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 6 R1 7
17-03-17 23:06:52.038 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 71. Bubbles during last 5000 ms interval: R1=7, R2=6, Total=13. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1150, R2=1195, Total=2345. Warn if over 250 bubbles per interval.
17-03-17 23:06:52.258 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:06:52.288 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:06:52.288 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 23:06:52.288 -07 000000610 INF: =================== Cycle #72 ===================
17-03-17 23:06:53.508 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-17 23:06:53.508 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 23:06:53.508 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:06:53.528 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 23:06:53.528 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-17 23:06:53.528 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 23:06:53.758 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 23:06:53.778 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-17 23:06:53.778 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-17 23:06:53.828 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:06:53.848 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 23:06:53.848 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 23:06:53.948 -07 000000610 INF: =================== Cycle #72, Pumping Reagent PR2 (3) ===================
17-03-17 23:06:53.948 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 23:06:53.948 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:06:53.978 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 23:06:53.978 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 23:06:53.978 -07 000000610 INF: =================== Cycle #72, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 23:06:54.108 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 23:06:54.148 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:06:55.018 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:06:55.048 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:06:55.048 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 23:06:55.048 -07 000000610 INF: =================== Cycle #72, Pumping Reagent PR2 (3) ===================
17-03-17 23:06:55.178 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:06:55.208 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 23:06:55.208 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 23:06:55.338 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:06:55.368 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 23:06:55.368 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 23:06:55.368 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 23:06:55.498 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 23:06:55.528 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:06:55.788 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 72, FrontChillerTemperature: 3.978563,
17-03-17 23:06:55.958 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:06:55.988 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:06:55.988 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 23:06:55.988 -07 000000610 INF: =================== Cycle #72 ===================
17-03-17 23:06:55.988 -07 000000610 INF: =================== Cycle #72, Flow Cell Temp 65° ===================
17-03-17 23:06:55.988 -07 000000610 INF: =================== Cycle #72, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-17 23:06:56.148 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 23:06:56.148 -07 000000478 INF: FPGA: Recv TEC2EN 
17-03-17 23:06:56.158 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:06:56.158 -07 000000610 INF: =================== Cycle #72, Flow Cell Temp 65° ===================
17-03-17 23:06:56.158 -07 000000610 INF: =================== Cycle #72 ===================
17-03-17 23:06:56.158 -07 000000610 INF: WaitCommand(30000) start
17-03-17 23:06:57.038 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 23:06:57.038 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 71. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1150, R2=1196, Total=2346. Warn if over 250 bubbles per interval.
17-03-17 23:07:01.158 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 72, FrontChillerTemperature: 4.024884,
17-03-17 23:07:02.038 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:07:02.038 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 71. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1150, R2=1196, Total=2346. Warn if over 250 bubbles per interval.
17-03-17 23:07:06.538 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 72, FrontChillerTemperature: 4.020806,
17-03-17 23:07:07.038 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:07:07.038 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 71. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1150, R2=1196, Total=2346. Warn if over 250 bubbles per interval.
17-03-17 23:07:11.898 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 72, FrontChillerTemperature: 4.027603,
17-03-17 23:07:12.038 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:07:12.038 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 71. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1150, R2=1196, Total=2346. Warn if over 250 bubbles per interval.
17-03-17 23:07:17.038 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:07:17.038 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 71. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1150, R2=1196, Total=2346. Warn if over 250 bubbles per interval.
17-03-17 23:07:17.268 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 72, FrontChillerTemperature: 4.007176,
17-03-17 23:07:22.038 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:07:22.038 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 71. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1150, R2=1196, Total=2346. Warn if over 250 bubbles per interval.
17-03-17 23:07:22.648 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 72, FrontChillerTemperature: 4.012614,
17-03-17 23:07:26.168 -07 000000610 INF: WaitCommand(30000) end
17-03-17 23:07:26.168 -07 000000610 INF: =================== Cycle #72, Pumping Reagent PR2 (3) ===================
17-03-17 23:07:26.168 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-17 23:07:26.168 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:07:26.198 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 23:07:26.198 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 23:07:26.198 -07 000000610 INF: =================== Cycle #72, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 23:07:26.328 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-17 23:07:26.368 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:07:26.908 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:07:26.938 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:07:26.938 -07 000000610 INF: LanePump: Waited 570 ms for pump motion to complete
17-03-17 23:07:26.938 -07 000000610 INF: =================== Cycle #72, Pumping Reagent PR2 (3) ===================
17-03-17 23:07:27.038 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:07:27.038 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 71. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1150, R2=1196, Total=2346. Warn if over 250 bubbles per interval.
17-03-17 23:07:27.068 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:07:27.098 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 23:07:27.098 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 23:07:27.228 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:07:27.258 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 23:07:27.258 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 23:07:27.258 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 23:07:27.388 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 23:07:27.418 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:07:27.848 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:07:27.878 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:07:27.878 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 23:07:27.878 -07 000000610 INF: =================== Cycle #72 ===================
17-03-17 23:07:27.878 -07 000000593 INF: WaitCommand(30000) start
17-03-17 23:07:27.878 -07 000000462 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 23:07:27.878 -07 000000462 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 23:07:28.008 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 72, FrontChillerTemperature: 4.030322,
17-03-17 23:07:29.098 -07 000000462 INF: AsyncDelayTimer waited 1213ms
17-03-17 23:07:29.098 -07 000000462 INF: LanePump: Xmit /1?\r
17-03-17 23:07:29.128 -07 000000462 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 23:07:29.128 -07 000000462 INF: LanePump: Current Position of Pump is: 1920
17-03-17 23:07:29.258 -07 000000462 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 23:07:29.298 -07 000000462 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:07:31.638 -07 000000462 INF: LanePump: Xmit /1Q\r
17-03-17 23:07:31.668 -07 000000462 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:07:32.038 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:07:32.038 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 71. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1150, R2=1196, Total=2346. Warn if over 250 bubbles per interval.
17-03-17 23:07:32.088 -07 000000462 INF: LanePump: Xmit /1Q\r
17-03-17 23:07:32.118 -07 000000462 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:07:32.118 -07 000000462 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-17 23:07:32.118 -07 000000462 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 23:07:32.118 -07 000000462 INF: ===================  ===================
17-03-17 23:07:33.388 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 72, FrontChillerTemperature: 4.000345,
17-03-17 23:07:37.038 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:07:37.038 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 71. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1150, R2=1196, Total=2346. Warn if over 250 bubbles per interval.
17-03-17 23:07:38.748 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 72, FrontChillerTemperature: 3.978563,
17-03-17 23:07:42.038 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:07:42.038 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 71. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1150, R2=1196, Total=2346. Warn if over 250 bubbles per interval.
17-03-17 23:07:44.118 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 72, FrontChillerTemperature: 3.971733,
17-03-17 23:07:47.038 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:07:47.038 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 71. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1150, R2=1196, Total=2346. Warn if over 250 bubbles per interval.
17-03-17 23:07:49.488 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 72, FrontChillerTemperature: 3.986717,
17-03-17 23:07:52.038 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:07:52.038 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 71. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1150, R2=1196, Total=2346. Warn if over 250 bubbles per interval.
17-03-17 23:07:54.858 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 72, FrontChillerTemperature: 3.981281,
17-03-17 23:07:57.038 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:07:57.038 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 71. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1150, R2=1196, Total=2346. Warn if over 250 bubbles per interval.
17-03-17 23:07:57.888 -07 000000593 INF: WaitCommand(30000) end
17-03-17 23:07:57.888 -07 000000610 INF: =================== Cycle #72, Flow Cell Temp 22° ===================
17-03-17 23:07:57.888 -07 000000610 INF: =================== Cycle #72, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-17 23:07:57.888 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-17 23:07:57.898 -07 000000382 INF: FPGA: Recv TEC2TEMP 
17-03-17 23:07:57.898 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:07:57.898 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 23:07:57.898 -07 000000627 INF: FPGA: Recv TEC2EN 
17-03-17 23:07:57.908 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:07:57.908 -07 000000610 INF: =================== Cycle #72, Flow Cell Temp 22° ===================
17-03-17 23:07:57.908 -07 000000610 INF: =================== Cycle #72 ===================
17-03-17 23:07:57.908 -07 000000610 INF: =================== Cycle #72, Pumping Reagent PR2 (3) ===================
17-03-17 23:07:57.908 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 23:07:57.908 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:07:57.948 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 23:07:57.948 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 23:07:57.948 -07 000000610 INF: =================== Cycle #72, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 23:07:58.078 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 23:07:58.118 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:08:00.228 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 72, FrontChillerTemperature: 3.974486,
17-03-17 23:08:01.248 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:08:01.278 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:08:01.698 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:08:01.728 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:08:02.038 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:08:02.038 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 71. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1150, R2=1196, Total=2346. Warn if over 250 bubbles per interval.
17-03-17 23:08:02.148 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:08:02.178 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:08:02.178 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 23:08:02.178 -07 000000610 INF: =================== Cycle #72, Pumping Reagent PR2 (3) ===================
17-03-17 23:08:02.308 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:08:02.338 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 23:08:02.338 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 23:08:02.468 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:08:02.498 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 23:08:02.498 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 23:08:02.498 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 23:08:02.628 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 23:08:02.658 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:08:03.088 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:08:03.118 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:08:03.118 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 23:08:03.118 -07 000000610 INF: =================== Cycle #72 ===================
17-03-17 23:08:04.338 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 23:08:04.338 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-17 23:08:04.338 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:08:04.358 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 23:08:04.358 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-17 23:08:04.358 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-17 23:08:04.508 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 23:08:04.528 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 23:08:04.528 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 23:08:04.578 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:08:04.598 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 23:08:04.598 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 23:08:04.698 -07 000000610 INF: =================== Cycle #72, Pumping Reagent USM (2) ===================
17-03-17 23:08:04.698 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 23:08:04.698 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:08:04.728 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 23:08:04.728 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 23:08:04.728 -07 000000610 INF: =================== Cycle #72, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-17 23:08:04.858 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 23:08:04.898 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:08:05.598 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 72, FrontChillerTemperature: 4.011254,
17-03-17 23:08:06.338 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:08:06.368 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:08:06.788 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:08:06.818 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:08:06.818 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 23:08:06.818 -07 000000610 INF: =================== Cycle #72, Pumping Reagent USM (2) ===================
17-03-17 23:08:06.948 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:08:06.978 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 23:08:06.978 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 23:08:07.038 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:08:07.038 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 71. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1150, R2=1196, Total=2346. Warn if over 250 bubbles per interval.
17-03-17 23:08:07.108 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:08:07.138 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 23:08:07.138 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 23:08:07.138 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 23:08:07.268 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 23:08:07.298 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:08:07.728 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:08:07.758 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:08:07.758 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 23:08:07.758 -07 000000610 INF: =================== Cycle #72 ===================
17-03-17 23:08:08.978 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 23:08:08.978 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 23:08:08.978 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:08:08.998 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 23:08:08.998 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-17 23:08:08.998 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 23:08:09.148 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 23:08:09.168 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 23:08:09.168 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 23:08:09.218 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:08:09.238 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 23:08:09.238 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 23:08:09.338 -07 000000610 INF: =================== Cycle #72, Pumping Reagent PR2 (3) ===================
17-03-17 23:08:09.338 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 23:08:09.338 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:08:09.368 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 23:08:09.368 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 23:08:09.368 -07 000000610 INF: =================== Cycle #72, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 23:08:09.498 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 23:08:09.538 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:08:10.408 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:08:10.438 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:08:10.438 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 23:08:10.438 -07 000000610 INF: =================== Cycle #72, Pumping Reagent PR2 (3) ===================
17-03-17 23:08:10.568 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:08:10.598 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 23:08:10.598 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 23:08:10.728 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:08:10.758 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 23:08:10.758 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 23:08:10.758 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 23:08:10.888 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 23:08:10.918 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:08:10.968 -07 000000409 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 72, FrontChillerTemperature: 4.020806,
17-03-17 23:08:11.348 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:08:11.378 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:08:11.378 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 23:08:11.378 -07 000000610 INF: =================== Cycle #72 ===================
17-03-17 23:08:11.378 -07 000000475 INF: WaitCommand(10000) start
17-03-17 23:08:11.378 -07 000000429 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 23:08:11.378 -07 000000429 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 23:08:12.038 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:08:12.038 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 71. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1150, R2=1196, Total=2346. Warn if over 250 bubbles per interval.
17-03-17 23:08:12.598 -07 000000429 INF: AsyncDelayTimer waited 1215ms
17-03-17 23:08:12.598 -07 000000429 INF: LanePump: Xmit /1?\r
17-03-17 23:08:12.628 -07 000000429 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 23:08:12.628 -07 000000429 INF: LanePump: Current Position of Pump is: 1110
17-03-17 23:08:12.758 -07 000000429 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 23:08:12.798 -07 000000429 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:08:14.328 -07 000000429 INF: LanePump: Xmit /1Q\r
17-03-17 23:08:14.358 -07 000000429 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:08:14.778 -07 000000429 INF: LanePump: Xmit /1Q\r
17-03-17 23:08:14.808 -07 000000429 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:08:14.808 -07 000000429 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 23:08:14.808 -07 000000429 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 23:08:14.808 -07 000000429 INF: ===================  ===================
17-03-17 23:08:16.338 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 72, FrontChillerTemperature: 4.020806,
17-03-17 23:08:17.038 -07 000000409 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:08:17.038 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 71. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1150, R2=1196, Total=2346. Warn if over 250 bubbles per interval.
17-03-17 23:08:21.388 -07 000000475 INF: WaitCommand(10000) end
17-03-17 23:08:21.388 -07 000000610 INF: =================== Cycle #72, Imaging ===================
17-03-17 23:08:21.388 -07 000000610 INF: Imaging Cycle 72: ScanTilesCommand Cycle 72 time start.
17-03-17 23:08:21.388 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-17 23:08:21.388 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:08:21.418 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 23:08:21.418 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-17 23:08:21.418 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-17 23:08:21.708 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 72, FrontChillerTemperature: 3.99219,
17-03-17 23:08:21.718 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 23:08:21.738 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 23:08:21.738 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 23:08:21.788 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:08:21.808 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 23:08:21.808 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:08:21.808 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:08:21.808 -07 000000618 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-17 23:08:21.808 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:08:21.808 -07 000000618 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-17 23:08:21.808 -07 000000462 INF: FPGA: Recv EXLED1ON 
17-03-17 23:08:21.818 -07 000000618 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:08:21.818 -07 000000618 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-17 23:08:21.818 -07 000000547 INF: FPGA: Recv EXLED1ADCR 23146
17-03-17 23:08:21.828 -07 000000618 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:21.828 -07 000000618 INF: RedLED: Using Red data: Photodiode ADC 23146 --> 7.4 mW (old method), or 205.2 mW (new method). Difference = 197.7 mW
17-03-17 23:08:21.828 -07 000000618 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-17 23:08:21.828 -07 000000593 INF: FPGA: Recv EXLED1OFF 
17-03-17 23:08:21.838 -07 000000618 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:21.838 -07 000000618 INF: RedLED: LED was on for 20 ms
17-03-17 23:08:21.838 -07 000000618 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 25 ms.
17-03-17 23:08:21.838 -07 000000618 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-17 23:08:21.838 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:08:21.838 -07 000000618 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-17 23:08:21.838 -07 000000551 INF: FPGA: Recv EXLED2ON 
17-03-17 23:08:21.848 -07 000000618 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:08:21.848 -07 000000618 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 23:08:21.848 -07 000000486 INF: FPGA: Recv EXLED1ADCR 2104
17-03-17 23:08:21.858 -07 000000618 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:21.858 -07 000000618 INF: GreenLED: Using Green data: Photodiode ADC 2104 --> 0.9 mW (old method), or 182.8 mW (new method). Difference = 181.9 mW
17-03-17 23:08:21.858 -07 000000618 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-17 23:08:21.858 -07 000000593 INF: FPGA: Recv EXLED2OFF 
17-03-17 23:08:21.868 -07 000000618 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:21.868 -07 000000618 INF: GreenLED: LED was on for 20 ms
17-03-17 23:08:21.868 -07 000000618 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 26 ms.
17-03-17 23:08:21.868 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 23:08:21.868 -07 000000382 INF: FPGA: Recv EMCUR 
17-03-17 23:08:21.878 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:08:21.878 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-17 23:08:22.038 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:08:22.038 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 71. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1150, R2=1196, Total=2346. Warn if over 250 bubbles per interval.
17-03-17 23:08:22.378 -07 000000409 INF: FPGA: Recv EMOUT
17-03-17 23:08:22.378 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 23:08:22.378 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-17 23:08:22.378 -07 000000623 INF: FPGA: Recv EMCUR 
17-03-17 23:08:22.388 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:08:22.388 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:08:22.388 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.38134765625, Z-Position -0.127499196973482. ------
17-03-17 23:08:22.388 -07 000000541 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17930 mm
17-03-17 23:08:22.388 -07 000000541 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:08:22.388 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:08:22.388 -07 000000482 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 23:08:22.388 -07 000000482 INF: Y Motor: Moving to 59.9126 mm, started at 75.3813 mm, delta = -15.4687 mm
17-03-17 23:08:22.388 -07 000000429 INF: Z Motor: Entering MoveAbsStepped (DAC = 39168, sync = True, waitForSettling = False)
17-03-17 23:08:22.388 -07 000000429 INF: Z Motor: Moving to -0.179300 mm, started at -0.127499 mm, distance = -51.80 um
17-03-17 23:08:22.398 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:08:22.398 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:08:22.398 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:08:22.398 -07 000000382 INF: FPGA: Recv YRDPOS 154381
17-03-17 23:08:22.408 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:08:22.408 -07 000000429 INF: FPGA: Xmit ZDACW 39168\n [Z Motor]
17-03-17 23:08:22.408 -07 000000482 INF: Y Motor: Encoder = 154381 = motor step 120610.2 = 75.3813 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:08:22.408 -07 000000482 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-17 23:08:22.408 -07 000000482 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 23:08:22.408 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 23:08:22.418 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:08:22.418 -07 000000429 INF: FPGA: 'ZDACW 39168' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 23:08:22.428 -07 000000482 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 23:08:22.438 -07 000000429 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:08:22.438 -07 000000501 INF: FPGA: Recv ZDACR 39168
17-03-17 23:08:22.448 -07 000000429 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:08:22.448 -07 000000429 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-17 23:08:22.618 -07 000000448 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:08:22.618 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 23:08:24.108 -07 000000486 INF: FPGA: Recv YMVTO 122703 24777
17-03-17 23:08:24.108 -07 000000482 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1675 ms to get response, and 1705 ms overall
17-03-17 23:08:24.108 -07 000000482 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 23:08:24.108 -07 000000482 INF: Y Motor: To move from 75.381 to 59.913 (-15.469 mm) should take 24750 steps, but required 24777 steps (15.486 mm). Slippage = 0.017 mm (0.00%).
17-03-17 23:08:24.108 -07 000000482 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1705 ms, distance = 15.469 mm, average velocity = 9.073 mm/sec
17-03-17 23:08:26.958 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:08:26.958 -07 000000561 INF: FPGA: Recv YRDPOS 122696
17-03-17 23:08:26.968 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:08:26.968 -07 000000482 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:08:26.988 -07 000000482 INF: Y Motor: After move to 59.912609, error = -0.002453, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:08:26.988 -07 000000482 INF: Y Motor: Position error after settling = -5 encoder counts (-0.002 mm), Delta during settling = -7 counts (-0.003 mm)
17-03-17 23:08:26.988 -07 000000482 INF: Y Motor: Moved to 59.9102 after 4596 ms
17-03-17 23:08:26.988 -07 000000541 INF: Z Motor: EndOfMoveAbsStepped: target = -0.179300 mm (DAC = 39168)
17-03-17 23:08:26.988 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:26.998 -07 000000429 INF: FPGA: Recv ZSGSRD 37202
17-03-17 23:08:26.998 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 23:08:26.998 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:26.998 -07 000000501 INF: FPGA: Recv ZSGSRD 37203
17-03-17 23:08:27.008 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:08:27.008 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:27.008 -07 000000618 INF: FPGA: Recv ZSGSRD 37203
17-03-17 23:08:27.018 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:27.018 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:27.018 -07 000000576 INF: FPGA: Recv ZSGSRD 37197
17-03-17 23:08:27.028 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:27.028 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:27.028 -07 000000623 INF: FPGA: Recv ZSGSRD 37202
17-03-17 23:08:27.038 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:27.038 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:27.038 -07 000000429 INF: FPGA: Recv ZSGSRD 37203
17-03-17 23:08:27.038 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:08:27.038 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 71. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1150, R2=1196, Total=2346. Warn if over 250 bubbles per interval.
17-03-17 23:08:27.048 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:27.048 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:27.048 -07 000000593 INF: FPGA: Recv ZSGSRD 37199
17-03-17 23:08:27.058 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:27.058 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:27.058 -07 000000429 INF: FPGA: Recv ZSGSRD 37199
17-03-17 23:08:27.068 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:27.078 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 72, FrontChillerTemperature: 3.983999,
17-03-17 23:08:27.088 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:27.088 -07 000000448 INF: FPGA: Recv ZSGSRD 37203
17-03-17 23:08:27.098 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:08:27.108 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:27.108 -07 000000623 INF: FPGA: Recv ZSGSRD 37197
17-03-17 23:08:27.118 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:08:27.118 -07 000000541 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:08:27.118 -07 000000448 INF: FPGA: Recv ZPIEZORD 33614
17-03-17 23:08:27.128 -07 000000541 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:27.128 -07 000000541 INF: Z Motor: Piezo is near 51.8 V (nominally 0 to 100 V), expect near 59.8 V, since DAC is at 5.977 V. Piezo Error = -8.0 V.
17-03-17 23:08:27.128 -07 000000541 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.3 um, Read 10 ADC samples: Avg = 37201 (-178.4 uncal um), Error = 0.9 uncal um, Median = 37202 (-178.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 37197 (-178.4 uncal um), Max = 37203 (-178.4 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:08:27.128 -07 000000541 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37201, posNoise = 2, negNoise = 4
17-03-17 23:08:27.128 -07 000000541 INF: Z Motor: After move to -0.179300, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:08:27.128 -07 000000541 INF: Z Motor: Settle wait time = 4599 ms, measure time = 132 ms (allowed 150 ms), total time = 4731 ms
17-03-17 23:08:27.128 -07 000000541 INF: Z Motor: Waiting extra 18 ms after reading position to reach expected total of 150 ms
17-03-17 23:08:27.148 -07 000000541 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4753 ms
17-03-17 23:08:27.148 -07 000000541 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:08:27.148 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:08:27.148 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:08:27.148 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:08:27.148 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:08:27.148 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:08:27.148 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:08:27.158 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:08:27.158 -07 000000627 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 23:08:27.178 -07 000000627 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-17 23:08:27.178 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:08:27.178 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 23:08:27.178 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:08:27.198 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 23:08:27.198 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 41 ms.
17-03-17 23:08:27.198 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:08:27.248 -07 000000593 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:08:27.448 -07 000000475 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:08:27.448 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:08:27.448 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:08:27.448 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2415923248, 0x0, 559484976) start.
17-03-17 23:08:27.478 -07 000000482 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:08:27.488 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 23:08:27.488 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 23:08:27.568 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2415923248, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 23:08:27.568 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:08:27.578 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:08:27.578 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 23:08:27.588 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:08:27.588 -07 000000478 INF: Image SNR check: start
17-03-17 23:08:27.588 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:08:27.598 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:08:27.598 -07 000000429 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:08:27.598 -07 000000478 INF: Image SNR check: pass  [peak (Max-Min)=58.32]
17-03-17 23:08:27.598 -07 000000478 INF: Autofocus start
17-03-17 23:08:27.598 -07 000000478 INF: MeasureProfile start
17-03-17 23:08:27.618 -07 000000478 INF: MeasureProfile done
17-03-17 23:08:27.618 -07 000000478 INF: X=16  Z correction [um]=0.01042744
17-03-17 23:08:27.618 -07 000000478 INF: Autofocus finished
17-03-17 23:08:27.798 -07 000000593 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:08:27.798 -07 000000429 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:08:27.798 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91015625, Z-position -0.179310467896784. ----------
17-03-17 23:08:27.798 -07 000000610 INF: Cycle	72	Tile	1	Exposure Settings		A	468	G	225	T	225	C	468
17-03-17 23:08:27.808 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37683, sync = True, waitForSettling = True)
17-03-17 23:08:27.808 -07 000000610 INF: Z Motor: Moving to -0.172502 mm, started at -0.179310 mm, distance = 6.81 um
17-03-17 23:08:27.808 -07 000000610 INF: FPGA: Xmit ZDACW 37683\n [Z Motor]
17-03-17 23:08:27.808 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 23:08:27.818 -07 000000610 INF: FPGA: 'ZDACW 37683' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:08:27.818 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:08:27.818 -07 000000618 INF: FPGA: Recv ZDACR 37683
17-03-17 23:08:27.828 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:27.828 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:08:27.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:27.978 -07 000000486 INF: FPGA: Recv ZSGSRD 36150
17-03-17 23:08:27.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:08:27.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:27.988 -07 000000448 INF: FPGA: Recv ZSGSRD 36139
17-03-17 23:08:27.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:27.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:27.998 -07 000000501 INF: FPGA: Recv ZSGSRD 36143
17-03-17 23:08:28.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:28.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:28.008 -07 000000478 INF: FPGA: Recv ZSGSRD 36142
17-03-17 23:08:28.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:28.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:28.018 -07 000000541 INF: FPGA: Recv ZSGSRD 36142
17-03-17 23:08:28.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:28.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:28.028 -07 000000475 INF: FPGA: Recv ZSGSRD 36139
17-03-17 23:08:28.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:28.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:28.038 -07 000000627 INF: FPGA: Recv ZSGSRD 36142
17-03-17 23:08:28.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:28.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:28.048 -07 000000462 INF: FPGA: Recv ZSGSRD 36151
17-03-17 23:08:28.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:28.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:28.058 -07 000000382 INF: FPGA: Recv ZSGSRD 36144
17-03-17 23:08:28.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:28.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:28.068 -07 000000475 INF: FPGA: Recv ZSGSRD 36141
17-03-17 23:08:28.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:28.078 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:08:28.078 -07 000000627 INF: FPGA: Recv ZPIEZORD 32174
17-03-17 23:08:28.088 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:28.088 -07 000000610 INF: Z Motor: Piezo is near 48.7 V (nominally 0 to 100 V), expect near 57.5 V, since DAC is at 5.750 V. Piezo Error = -8.8 V.
17-03-17 23:08:28.088 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.5 um, Read 10 ADC samples: Avg = 36143 (-171.6 uncal um), Error = 0.9 uncal um, Median = 36142 (-171.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36139 (-171.6 uncal um), Max = 36151 (-171.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:08:28.088 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36143, posNoise = 8, negNoise = 4
17-03-17 23:08:28.088 -07 000000610 INF: Z Motor: After move to -0.172502, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:08:28.088 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 23:08:28.088 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:08:28.088 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:08:28.088 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:08:28.088 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:08:28.088 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:08:28.088 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:08:28.088 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:08:28.088 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:08:28.088 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 23:08:28.088 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:08:28.088 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:08:28.088 -07 000000547 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 23:08:28.098 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 23:08:28.098 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:08:28.108 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-17 23:08:28.108 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 23:08:28.118 -07 000000547 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-17 23:08:28.118 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:08:28.118 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 23:08:28.118 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:08:28.128 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 23:08:28.128 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 39 ms.
17-03-17 23:08:28.128 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 468 468 225 225 37860 150\n [Camera]
17-03-17 23:08:28.328 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:08:28.798 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 660
17-03-17 23:08:28.798 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 660
17-03-17 23:08:28.798 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:08:28.798 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 660
17-03-17 23:08:28.798 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 660
17-03-17 23:08:28.798 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:08:28.938 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:08:28.938 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2470426896, 0x0, 418435064) start.
17-03-17 23:08:28.938 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:08:28.938 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2435004632, 0x0, 391868352) start.
17-03-17 23:08:28.988 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37860 853
17-03-17 23:08:29.148 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1006
17-03-17 23:08:29.328 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2435004632, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 23:08:29.328 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 23:08:29.328 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:08:29.328 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2470426896, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 23:08:29.328 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 23:08:29.328 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:08:29.338 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:08:29.338 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 537 ms.
17-03-17 23:08:29.338 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:08:29.348 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 540 ms.
17-03-17 23:08:29.368 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1228
17-03-17 23:08:29.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1228
17-03-17 23:08:29.368 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:08:29.368 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:08:29.368 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 23:08:29.368 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1228
17-03-17 23:08:29.368 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1228
17-03-17 23:08:29.368 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:08:29.368 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:08:29.368 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2505849160, 0x0, 418435064) start.
17-03-17 23:08:29.558 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP 1421
17-03-17 23:08:29.558 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:08:29.558 -07 000000610 INF: FPGA: 'CAMDBLSNAP 468 468 225 225 37860 150' command took 2 ms to send, 1425 ms to get response, and 1428 ms overall
17-03-17 23:08:29.558 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:08:29.558 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91015625, Z-Position -0.172513651450801. ------
17-03-17 23:08:29.568 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:08:29.568 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17847 mm
17-03-17 23:08:29.568 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:08:29.568 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:08:29.568 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 38987, sync = True, waitForSettling = False)
17-03-17 23:08:29.568 -07 000000576 INF: Z Motor: Moving to -0.178471 mm, started at -0.172514 mm, distance = -5.96 um
17-03-17 23:08:29.568 -07 000000486 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 23:08:29.568 -07 000000486 INF: Y Motor: Moving to 60.7426 mm, started at 59.9102 mm, delta = 0.8325 mm
17-03-17 23:08:29.578 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 2 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:08:29.578 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:08:29.578 -07 000000478 INF: FPGA: Recv YRDPOS 122696
17-03-17 23:08:29.588 -07 000000576 INF: FPGA: Xmit ZDACW 38987\n [Z Motor]
17-03-17 23:08:29.588 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 23:08:29.588 -07 000000486 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:08:29.588 -07 000000486 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:08:29.588 -07 000000486 INF: Y Motor: Moving 1332 steps2
17-03-17 23:08:29.588 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 23:08:29.598 -07 000000576 INF: FPGA: 'ZDACW 38987' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 23:08:29.598 -07 000000475 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:08:29.608 -07 000000486 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:08:29.618 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:08:29.618 -07 000000482 INF: FPGA: Recv ZDACR 38987
17-03-17 23:08:29.628 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:08:29.628 -07 000000576 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-17 23:08:29.768 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 23:08:29.768 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 23:08:29.768 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:08:29.768 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2505849160, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 23:08:29.768 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 23:08:29.768 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:08:29.778 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:08:29.778 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 23:08:29.778 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 23:08:29.788 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 23:08:29.798 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:08:29.798 -07 000000475 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 23:08:29.978 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-17 23:08:29.978 -07 000000486 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 23:08:30.018 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:08:30.018 -07 000000576 INF: FPGA: Recv YRDPOS 124379
17-03-17 23:08:30.028 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:30.028 -07 000000486 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:08:30.028 -07 000000486 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-17 23:08:30.028 -07 000000486 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.832 mm, average velocity = 2.097 mm/sec
17-03-17 23:08:30.978 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:08:30.978 -07 000000502 INF: FPGA: Recv YRDPOS 124380
17-03-17 23:08:30.988 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:08:30.988 -07 000000486 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:08:31.008 -07 000000486 INF: Y Motor: After move to 60.742607, error = -0.010185, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:08:31.008 -07 000000486 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 23:08:31.008 -07 000000486 INF: Y Motor: Moved to 60.7324 after 1439 ms (table move)
17-03-17 23:08:31.018 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178471 mm (DAC = 38987)
17-03-17 23:08:31.018 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:31.018 -07 000000415 INF: FPGA: Recv ZSGSRD 37073
17-03-17 23:08:31.028 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:31.028 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:31.028 -07 000000561 INF: FPGA: Recv ZSGSRD 37071
17-03-17 23:08:31.038 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:31.038 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:31.038 -07 000000382 INF: FPGA: Recv ZSGSRD 37073
17-03-17 23:08:31.048 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:31.048 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:31.048 -07 000000448 INF: FPGA: Recv ZSGSRD 37077
17-03-17 23:08:31.058 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:31.058 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:31.058 -07 000000482 INF: FPGA: Recv ZSGSRD 37067
17-03-17 23:08:31.068 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:31.068 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:31.068 -07 000000409 INF: FPGA: Recv ZSGSRD 37077
17-03-17 23:08:31.078 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:31.078 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:31.078 -07 000000415 INF: FPGA: Recv ZSGSRD 37073
17-03-17 23:08:31.088 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:31.088 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:31.088 -07 000000486 INF: FPGA: Recv ZSGSRD 37064
17-03-17 23:08:31.098 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:31.098 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:31.098 -07 000000627 INF: FPGA: Recv ZSGSRD 37072
17-03-17 23:08:31.108 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:31.108 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:31.108 -07 000000541 INF: FPGA: Recv ZSGSRD 37072
17-03-17 23:08:31.118 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:31.118 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:08:31.118 -07 000000475 INF: FPGA: Recv ZPIEZORD 33423
17-03-17 23:08:31.128 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:31.128 -07 000000618 INF: Z Motor: Piezo is near 51.4 V (nominally 0 to 100 V), expect near 59.5 V, since DAC is at 5.949 V. Piezo Error = -8.1 V.
17-03-17 23:08:31.128 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.5 um, Read 10 ADC samples: Avg = 37072 (-177.6 uncal um), Error = 0.9 uncal um, Median = 37072 (-177.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 37064 (-177.5 uncal um), Max = 37077 (-177.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 23:08:31.128 -07 000000618 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37072, posNoise = 5, negNoise = 8
17-03-17 23:08:31.128 -07 000000618 INF: Z Motor: After move to -0.178471, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:08:31.128 -07 000000618 INF: Z Motor: Settle wait time = 1442 ms, measure time = 111 ms (allowed 150 ms), total time = 1553 ms
17-03-17 23:08:31.128 -07 000000618 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 23:08:31.168 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1595 ms
17-03-17 23:08:31.168 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:08:31.168 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:08:31.168 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:08:31.168 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:08:31.168 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:08:31.168 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:08:31.168 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:08:31.168 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 23:08:31.168 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:08:31.178 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:08:31.178 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:08:31.188 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 23:08:31.188 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 23:08:31.188 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:08:31.228 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:08:31.428 -07 000000475 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:08:31.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:08:31.428 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:08:31.438 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2415923248, 0x0, 559484976) start.
17-03-17 23:08:31.468 -07 000000482 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:08:31.468 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-17 23:08:31.468 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 23:08:31.558 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2415923248, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 23:08:31.558 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:08:31.558 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:08:31.558 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 23:08:31.668 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:08:31.668 -07 000000462 INF: Autofocus start
17-03-17 23:08:31.668 -07 000000462 INF: MeasureProfile start
17-03-17 23:08:31.668 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:08:31.678 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:08:31.678 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:08:31.678 -07 000000462 INF: MeasureProfile done
17-03-17 23:08:31.678 -07 000000462 INF: X=16  Z correction [um]=0.01042744
17-03-17 23:08:31.678 -07 000000462 INF: Autofocus finished
17-03-17 23:08:31.878 -07 000000593 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:08:31.878 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-17 23:08:31.878 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.732421875, Z-position -0.178481744530497. ----------
17-03-17 23:08:31.878 -07 000000610 INF: Cycle	72	Tile	2	Exposure Settings		A	468	G	225	T	225	C	468
17-03-17 23:08:31.888 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37502, sync = True, waitForSettling = True)
17-03-17 23:08:31.888 -07 000000610 INF: Z Motor: Moving to -0.171673 mm, started at -0.178482 mm, distance = 6.81 um
17-03-17 23:08:31.888 -07 000000610 INF: FPGA: Xmit ZDACW 37502\n [Z Motor]
17-03-17 23:08:31.888 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 23:08:31.898 -07 000000610 INF: FPGA: 'ZDACW 37502' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:08:31.898 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:08:31.898 -07 000000475 INF: FPGA: Recv ZDACR 37502
17-03-17 23:08:31.908 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:31.908 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:08:32.038 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:08:32.038 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 71. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1150, R2=1196, Total=2346. Warn if over 250 bubbles per interval.
17-03-17 23:08:32.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:32.058 -07 000000382 INF: FPGA: Recv ZSGSRD 36014
17-03-17 23:08:32.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:32.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:32.068 -07 000000475 INF: FPGA: Recv ZSGSRD 36017
17-03-17 23:08:32.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:32.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:32.078 -07 000000502 INF: FPGA: Recv ZSGSRD 36014
17-03-17 23:08:32.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:32.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:32.088 -07 000000551 INF: FPGA: Recv ZSGSRD 36014
17-03-17 23:08:32.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:32.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:32.098 -07 000000576 INF: FPGA: Recv ZSGSRD 36015
17-03-17 23:08:32.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:32.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:32.108 -07 000000561 INF: FPGA: Recv ZSGSRD 36015
17-03-17 23:08:32.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:32.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:32.118 -07 000000448 INF: FPGA: Recv ZSGSRD 36013
17-03-17 23:08:32.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:32.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:32.128 -07 000000478 INF: FPGA: Recv ZSGSRD 36014
17-03-17 23:08:32.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:32.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:32.138 -07 000000486 INF: FPGA: Recv ZSGSRD 36009
17-03-17 23:08:32.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:32.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:32.148 -07 000000502 INF: FPGA: Recv ZSGSRD 36013
17-03-17 23:08:32.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:32.168 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:08:32.168 -07 000000561 INF: FPGA: Recv ZPIEZORD 32008
17-03-17 23:08:32.178 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:08:32.178 -07 000000610 INF: Z Motor: Piezo is near 48.4 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.722 V. Piezo Error = -8.8 V.
17-03-17 23:08:32.178 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.7 um, Read 10 ADC samples: Avg = 36014 (-170.8 uncal um), Error = 0.9 uncal um, Median = 36014 (-170.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36009 (-170.8 uncal um), Max = 36017 (-170.8 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:08:32.178 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36014, posNoise = 3, negNoise = 5
17-03-17 23:08:32.178 -07 000000610 INF: Z Motor: After move to -0.171673, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:08:32.178 -07 000000610 INF: Z Motor: MoveAbsStepped took 288 ms)
17-03-17 23:08:32.178 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:08:32.178 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:08:32.178 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:08:32.178 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:08:32.178 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:08:32.178 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:08:32.178 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:08:32.178 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:08:32.178 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 3 ms.
17-03-17 23:08:32.178 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:08:32.178 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:08:32.178 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:08:32.188 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:08:32.188 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:08:32.188 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 23:08:32.188 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:08:32.198 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 23:08:32.198 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 23:08:32.198 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 23:08:32.198 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:08:32.208 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 468 468 225 225 37678 150\n [Camera]
17-03-17 23:08:32.408 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:08:32.478 -07 000000409 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 72, FrontChillerTemperature: 3.989471,
17-03-17 23:08:32.868 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 660
17-03-17 23:08:32.868 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 660
17-03-17 23:08:32.878 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:08:32.878 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:08:32.878 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 23:08:32.878 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 660
17-03-17 23:08:32.878 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 660
17-03-17 23:08:32.878 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:08:32.878 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:08:32.878 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-17 23:08:33.068 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37678 853
17-03-17 23:08:33.338 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 461 ms.
17-03-17 23:08:33.338 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 461 ms.
17-03-17 23:08:33.338 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:08:33.338 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1003
17-03-17 23:08:33.338 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 455 ms.
17-03-17 23:08:33.338 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 456 ms.
17-03-17 23:08:33.338 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:08:33.338 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:08:33.338 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 466 ms.
17-03-17 23:08:33.338 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:08:33.348 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 468 ms.
17-03-17 23:08:33.448 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1228
17-03-17 23:08:33.448 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1228
17-03-17 23:08:33.448 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:08:33.448 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1228
17-03-17 23:08:33.448 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1228
17-03-17 23:08:33.448 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:08:33.448 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:08:33.448 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-17 23:08:33.458 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:08:33.458 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 23:08:33.628 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP 1421
17-03-17 23:08:33.628 -07 000000547 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:08:33.628 -07 000000610 INF: FPGA: 'CAMDBLSNAP 468 468 225 225 37678 150' command took 2 ms to send, 1419 ms to get response, and 1428 ms overall
17-03-17 23:08:33.638 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:08:33.638 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.732421875, Z-Position -0.171684928084514. ------
17-03-17 23:08:33.638 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:08:33.638 -07 000000482 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17825 mm
17-03-17 23:08:33.638 -07 000000482 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:08:33.648 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:08:33.648 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:08:33.648 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:08:33.648 -07 000000478 INF: Z Motor: Entering MoveAbsStepped (DAC = 38938, sync = True, waitForSettling = False)
17-03-17 23:08:33.648 -07 000000478 INF: Z Motor: Moving to -0.178247 mm, started at -0.171685 mm, distance = -6.56 um
17-03-17 23:08:33.648 -07 000000551 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 23:08:33.648 -07 000000551 INF: Y Motor: Moving to 61.5726 mm, started at 60.7324 mm, delta = 0.8402 mm
17-03-17 23:08:33.658 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:08:33.658 -07 000000502 INF: FPGA: Recv YRDPOS 124380
17-03-17 23:08:33.668 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 23:08:33.668 -07 000000551 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:08:33.668 -07 000000478 INF: FPGA: Xmit ZDACW 38938\n [Z Motor]
17-03-17 23:08:33.668 -07 000000551 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:08:33.668 -07 000000551 INF: Y Motor: Moving 1344 steps-22
17-03-17 23:08:33.668 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 23:08:33.678 -07 000000478 INF: FPGA: 'ZDACW 38938' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 23:08:33.678 -07 000000478 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:08:33.678 -07 000000576 INF: FPGA: Recv ZDACR 38938
17-03-17 23:08:33.688 -07 000000551 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:08:33.688 -07 000000478 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:33.688 -07 000000478 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-17 23:08:33.848 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:08:33.848 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:08:33.848 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 23:08:33.848 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 23:08:33.848 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:08:33.848 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 23:08:33.848 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 23:08:33.848 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:08:33.848 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:08:33.858 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:08:33.858 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 23:08:33.858 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 23:08:34.058 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-17 23:08:34.058 -07 000000551 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 399 ms overall
17-03-17 23:08:34.098 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:08:34.108 -07 000000415 INF: FPGA: Recv YRDPOS 126081
17-03-17 23:08:34.108 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 23:08:34.108 -07 000000551 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:08:34.108 -07 000000551 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 23:08:34.108 -07 000000551 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.840 mm, average velocity = 2.106 mm/sec
17-03-17 23:08:35.058 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:08:35.058 -07 000000448 INF: FPGA: Recv YRDPOS 126081
17-03-17 23:08:35.068 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:08:35.068 -07 000000551 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:08:35.088 -07 000000551 INF: Y Motor: After move to 61.572609, error = -0.009621, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:08:35.088 -07 000000551 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:08:35.088 -07 000000551 INF: Y Motor: Moved to 61.5630 after 1443 ms (table move)
17-03-17 23:08:35.088 -07 000000482 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178247 mm (DAC = 38938)
17-03-17 23:08:35.098 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:35.098 -07 000000547 INF: FPGA: Recv ZSGSRD 37029
17-03-17 23:08:35.108 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:35.108 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:35.108 -07 000000561 INF: FPGA: Recv ZSGSRD 37029
17-03-17 23:08:35.118 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:35.118 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:35.118 -07 000000593 INF: FPGA: Recv ZSGSRD 37038
17-03-17 23:08:35.128 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:35.128 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:35.128 -07 000000501 INF: FPGA: Recv ZSGSRD 37045
17-03-17 23:08:35.138 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:35.138 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:35.138 -07 000000541 INF: FPGA: Recv ZSGSRD 37035
17-03-17 23:08:35.148 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:35.148 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:35.148 -07 000000462 INF: FPGA: Recv ZSGSRD 37037
17-03-17 23:08:35.158 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:35.158 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:35.158 -07 000000409 INF: FPGA: Recv ZSGSRD 37038
17-03-17 23:08:35.168 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:35.168 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:35.168 -07 000000623 INF: FPGA: Recv ZSGSRD 37030
17-03-17 23:08:35.178 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:35.178 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:35.178 -07 000000475 INF: FPGA: Recv ZSGSRD 37041
17-03-17 23:08:35.188 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:35.188 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:35.188 -07 000000551 INF: FPGA: Recv ZSGSRD 37036
17-03-17 23:08:35.198 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:35.198 -07 000000482 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:08:35.198 -07 000000547 INF: FPGA: Recv ZPIEZORD 33373
17-03-17 23:08:35.208 -07 000000482 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:35.208 -07 000000482 INF: Z Motor: Piezo is near 51.3 V (nominally 0 to 100 V), expect near 59.4 V, since DAC is at 5.942 V. Piezo Error = -8.1 V.
17-03-17 23:08:35.208 -07 000000482 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.2 um, Read 10 ADC samples: Avg = 37036 (-177.4 uncal um), Error = 0.9 uncal um, Median = 37036 (-177.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 37029 (-177.3 uncal um), Max = 37045 (-177.4 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 23:08:35.208 -07 000000482 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37036, posNoise = 9, negNoise = 7
17-03-17 23:08:35.208 -07 000000482 INF: Z Motor: After move to -0.178247, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:08:35.208 -07 000000482 INF: Z Motor: Settle wait time = 1448 ms, measure time = 111 ms (allowed 150 ms), total time = 1559 ms
17-03-17 23:08:35.208 -07 000000482 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 23:08:35.248 -07 000000482 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-17 23:08:35.248 -07 000000482 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:08:35.248 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:08:35.248 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:08:35.248 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:08:35.248 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:08:35.248 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:08:35.248 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:08:35.248 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:08:35.248 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:08:35.258 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:08:35.258 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:08:35.268 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 23:08:35.268 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 23:08:35.268 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:08:35.308 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:08:35.508 -07 000000478 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:08:35.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:08:35.508 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:08:35.508 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1184141528, 0x0, 559484976) start.
17-03-17 23:08:35.548 -07 000000627 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:08:35.548 -07 000000486 INF: FPGA: Recv CAMSNAP
17-03-17 23:08:35.548 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 23:08:35.628 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1184141528, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 23:08:35.628 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:08:35.628 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 23:08:35.628 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 23:08:35.648 -07 000000623 INF: Autofocus start
17-03-17 23:08:35.648 -07 000000623 INF: MeasureProfile start
17-03-17 23:08:35.648 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:08:35.648 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:08:35.658 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:08:35.658 -07 000000478 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:08:35.658 -07 000000623 INF: MeasureProfile done
17-03-17 23:08:35.658 -07 000000623 INF: X=32  Z correction [um]=0.09220707
17-03-17 23:08:35.658 -07 000000623 INF: Autofocus finished
17-03-17 23:08:35.858 -07 000000541 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:08:35.858 -07 000000478 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:08:35.858 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56298828125, Z-position -0.178250472893394. ----------
17-03-17 23:08:35.858 -07 000000610 INF: Cycle	72	Tile	3	Exposure Settings		A	468	G	225	T	225	C	468
17-03-17 23:08:35.868 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37471, sync = True, waitForSettling = True)
17-03-17 23:08:35.868 -07 000000610 INF: Z Motor: Moving to -0.171531 mm, started at -0.178250 mm, distance = 6.72 um
17-03-17 23:08:35.868 -07 000000610 INF: FPGA: Xmit ZDACW 37471\n [Z Motor]
17-03-17 23:08:35.868 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 23:08:35.878 -07 000000610 INF: FPGA: 'ZDACW 37471' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:08:35.878 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:08:35.878 -07 000000627 INF: FPGA: Recv ZDACR 37471
17-03-17 23:08:35.888 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:35.888 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:08:36.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:36.038 -07 000000409 INF: FPGA: Recv ZSGSRD 35989
17-03-17 23:08:36.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:08:36.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:36.048 -07 000000429 INF: FPGA: Recv ZSGSRD 35989
17-03-17 23:08:36.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:36.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:36.058 -07 000000623 INF: FPGA: Recv ZSGSRD 35996
17-03-17 23:08:36.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:36.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:36.068 -07 000000409 INF: FPGA: Recv ZSGSRD 35990
17-03-17 23:08:36.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:36.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:36.078 -07 000000593 INF: FPGA: Recv ZSGSRD 35992
17-03-17 23:08:36.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:36.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:36.088 -07 000000409 INF: FPGA: Recv ZSGSRD 35994
17-03-17 23:08:36.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:36.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:36.098 -07 000000547 INF: FPGA: Recv ZSGSRD 35991
17-03-17 23:08:36.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:36.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:36.108 -07 000000475 INF: FPGA: Recv ZSGSRD 35990
17-03-17 23:08:36.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:36.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:36.118 -07 000000541 INF: FPGA: Recv ZSGSRD 35989
17-03-17 23:08:36.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:36.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:36.128 -07 000000501 INF: FPGA: Recv ZSGSRD 35991
17-03-17 23:08:36.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:36.138 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:08:36.138 -07 000000382 INF: FPGA: Recv ZPIEZORD 31973
17-03-17 23:08:36.148 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:36.148 -07 000000610 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.718 V. Piezo Error = -8.9 V.
17-03-17 23:08:36.148 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.5 um, Read 10 ADC samples: Avg = 35991 (-170.7 uncal um), Error = 0.9 uncal um, Median = 35990 (-170.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35989 (-170.6 uncal um), Max = 35996 (-170.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 23:08:36.148 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35991, posNoise = 5, negNoise = 2
17-03-17 23:08:36.148 -07 000000610 INF: Z Motor: After move to -0.171531, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:08:36.148 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 23:08:36.148 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:08:36.148 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:08:36.148 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:08:36.148 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:08:36.148 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:08:36.148 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:08:36.148 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:08:36.148 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:08:36.148 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:08:36.148 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:08:36.148 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:08:36.148 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:08:36.158 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:08:36.158 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:08:36.158 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 23:08:36.158 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:08:36.168 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 23:08:36.168 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 23:08:36.168 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 23:08:36.168 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:08:36.168 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 468 468 225 225 37648 150\n [Camera]
17-03-17 23:08:36.378 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:08:36.848 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 660
17-03-17 23:08:36.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 660
17-03-17 23:08:36.848 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:08:36.848 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:08:36.848 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 23:08:36.848 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 660
17-03-17 23:08:36.848 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 660
17-03-17 23:08:36.848 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:08:36.848 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:08:36.848 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 23:08:37.038 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37648 853
17-03-17 23:08:37.038 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:08:37.038 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 71. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1150, R2=1196, Total=2346. Warn if over 250 bubbles per interval.
17-03-17 23:08:37.188 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1003
17-03-17 23:08:37.238 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 23:08:37.238 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 23:08:37.238 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:08:37.238 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 23:08:37.238 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 23:08:37.238 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:08:37.248 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:08:37.248 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:08:37.248 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 23:08:37.248 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 23:08:37.408 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1228
17-03-17 23:08:37.408 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1228
17-03-17 23:08:37.408 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:08:37.408 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:08:37.408 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 23:08:37.408 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1228
17-03-17 23:08:37.408 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1228
17-03-17 23:08:37.418 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:08:37.418 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:08:37.418 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 23:08:37.598 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP 1421
17-03-17 23:08:37.598 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:08:37.598 -07 000000610 INF: FPGA: 'CAMDBLSNAP 468 468 225 225 37648 150' command took 2 ms to send, 1418 ms to get response, and 1429 ms overall
17-03-17 23:08:37.608 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:08:37.608 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56298828125, Z-Position -0.171537171205254. ------
17-03-17 23:08:37.608 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:08:37.608 -07 000000551 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17790 mm
17-03-17 23:08:37.608 -07 000000551 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:08:37.608 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 38861, sync = True, waitForSettling = False)
17-03-17 23:08:37.608 -07 000000623 INF: Z Motor: Moving to -0.177894 mm, started at -0.171537 mm, distance = -6.36 um
17-03-17 23:08:37.608 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 23:08:37.618 -07 000000501 INF: Y Motor: Moving to 62.4026 mm, started at 61.5630 mm, delta = 0.8396 mm
17-03-17 23:08:37.618 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:08:37.618 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:08:37.618 -07 000000623 INF: FPGA: Xmit ZDACW 38861\n [Z Motor]
17-03-17 23:08:37.618 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 23:08:37.628 -07 000000623 INF: FPGA: 'ZDACW 38861' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:08:37.628 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:08:37.638 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:08:37.638 -07 000000576 INF: FPGA: Recv YRDPOS 126082
17-03-17 23:08:37.648 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:08:37.648 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:08:37.648 -07 000000501 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:08:37.648 -07 000000475 INF: FPGA: Recv ZDACR 38861
17-03-17 23:08:37.648 -07 000000501 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:08:37.648 -07 000000501 INF: Y Motor: Moving 1343 steps-20
17-03-17 23:08:37.658 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:08:37.658 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:08:37.658 -07 000000623 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-17 23:08:37.818 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 404 ms.
17-03-17 23:08:37.818 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 23:08:37.818 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:08:37.818 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 403 ms.
17-03-17 23:08:37.818 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 23:08:37.818 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:08:37.818 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:08:37.828 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 23:08:37.828 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 23:08:37.828 -07 000000623 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:08:37.828 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 214 ms overall
17-03-17 23:08:37.828 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 23:08:37.838 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 72, FrontChillerTemperature: 3.983999,
17-03-17 23:08:38.028 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 23:08:38.028 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-17 23:08:38.068 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:08:38.078 -07 000000618 INF: FPGA: Recv YRDPOS 127785
17-03-17 23:08:38.078 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 23:08:38.078 -07 000000501 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:08:38.078 -07 000000501 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 23:08:38.078 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.840 mm, average velocity = 2.187 mm/sec
17-03-17 23:08:39.028 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:08:39.028 -07 000000482 INF: FPGA: Recv YRDPOS 127785
17-03-17 23:08:39.038 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:39.038 -07 000000501 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:08:39.058 -07 000000501 INF: Y Motor: After move to 62.402607, error = -0.007587, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:08:39.058 -07 000000501 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:08:39.058 -07 000000501 INF: Y Motor: Moved to 62.3950 after 1445 ms (table move)
17-03-17 23:08:39.058 -07 000000551 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177894 mm (DAC = 38861)
17-03-17 23:08:39.058 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:39.068 -07 000000429 INF: FPGA: Recv ZSGSRD 36987
17-03-17 23:08:39.068 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 23:08:39.068 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:39.068 -07 000000415 INF: FPGA: Recv ZSGSRD 36973
17-03-17 23:08:39.078 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:08:39.078 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:39.078 -07 000000561 INF: FPGA: Recv ZSGSRD 36986
17-03-17 23:08:39.088 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:39.088 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:39.088 -07 000000429 INF: FPGA: Recv ZSGSRD 36990
17-03-17 23:08:39.098 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:39.098 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:39.098 -07 000000547 INF: FPGA: Recv ZSGSRD 36983
17-03-17 23:08:39.108 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:39.108 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:39.108 -07 000000618 INF: FPGA: Recv ZSGSRD 36981
17-03-17 23:08:39.118 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:39.118 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:39.118 -07 000000576 INF: FPGA: Recv ZSGSRD 36983
17-03-17 23:08:39.128 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:39.128 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:39.128 -07 000000541 INF: FPGA: Recv ZSGSRD 36977
17-03-17 23:08:39.138 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:39.138 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:39.138 -07 000000478 INF: FPGA: Recv ZSGSRD 36978
17-03-17 23:08:39.148 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:39.148 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:39.148 -07 000000415 INF: FPGA: Recv ZSGSRD 36980
17-03-17 23:08:39.158 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:39.158 -07 000000551 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:08:39.158 -07 000000627 INF: FPGA: Recv ZPIEZORD 33302
17-03-17 23:08:39.168 -07 000000551 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:39.168 -07 000000551 INF: Z Motor: Piezo is near 51.1 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.930 V. Piezo Error = -8.2 V.
17-03-17 23:08:39.168 -07 000000551 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.9 um, Read 10 ADC samples: Avg = 36982 (-177.0 uncal um), Error = 0.9 uncal um, Median = 36982 (-177.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36973 (-177.0 uncal um), Max = 36990 (-177.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 23:08:39.168 -07 000000551 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36982, posNoise = 8, negNoise = 9
17-03-17 23:08:39.168 -07 000000551 INF: Z Motor: After move to -0.177894, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:08:39.168 -07 000000551 INF: Z Motor: Settle wait time = 1449 ms, measure time = 103 ms (allowed 150 ms), total time = 1552 ms
17-03-17 23:08:39.168 -07 000000551 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 23:08:39.218 -07 000000551 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-17 23:08:39.218 -07 000000551 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:08:39.218 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:08:39.218 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:08:39.218 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:08:39.218 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:08:39.218 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:08:39.218 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:08:39.218 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:08:39.218 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:08:39.228 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 23:08:39.228 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:08:39.228 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 23:08:39.228 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 23:08:39.238 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:08:39.288 -07 000000623 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:08:39.488 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:08:39.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:08:39.488 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:08:39.488 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) start.
17-03-17 23:08:39.528 -07 000000482 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:08:39.528 -07 000000623 INF: FPGA: Recv CAMSNAP
17-03-17 23:08:39.528 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 288 ms overall
17-03-17 23:08:39.608 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 23:08:39.608 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:08:39.608 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 23:08:39.608 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 23:08:39.628 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:08:39.628 -07 000000593 INF: Autofocus start
17-03-17 23:08:39.628 -07 000000593 INF: MeasureProfile start
17-03-17 23:08:39.628 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:08:39.638 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:08:39.638 -07 000000475 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:08:39.638 -07 000000593 INF: MeasureProfile done
17-03-17 23:08:39.638 -07 000000593 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 23:08:39.638 -07 000000593 INF: Autofocus finished
17-03-17 23:08:39.838 -07 000000486 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:08:39.838 -07 000000475 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:08:39.838 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39501953125, Z-position -0.177903565437739. ----------
17-03-17 23:08:39.838 -07 000000610 INF: Cycle	72	Tile	4	Exposure Settings		A	468	G	225	T	225	C	468
17-03-17 23:08:39.848 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37341, sync = True, waitForSettling = True)
17-03-17 23:08:39.848 -07 000000610 INF: Z Motor: Moving to -0.170936 mm, started at -0.177904 mm, distance = 6.97 um
17-03-17 23:08:39.848 -07 000000610 INF: FPGA: Xmit ZDACW 37341\n [Z Motor]
17-03-17 23:08:39.848 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 23:08:39.858 -07 000000610 INF: FPGA: 'ZDACW 37341' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:39.858 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:08:39.858 -07 000000482 INF: FPGA: Recv ZDACR 37341
17-03-17 23:08:39.868 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:39.868 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:08:40.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:40.018 -07 000000541 INF: FPGA: Recv ZSGSRD 35900
17-03-17 23:08:40.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:08:40.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:40.028 -07 000000478 INF: FPGA: Recv ZSGSRD 35899
17-03-17 23:08:40.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:40.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:40.038 -07 000000551 INF: FPGA: Recv ZSGSRD 35895
17-03-17 23:08:40.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:40.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:40.048 -07 000000478 INF: FPGA: Recv ZSGSRD 35902
17-03-17 23:08:40.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:40.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:40.058 -07 000000551 INF: FPGA: Recv ZSGSRD 35897
17-03-17 23:08:40.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:40.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:40.068 -07 000000627 INF: FPGA: Recv ZSGSRD 35890
17-03-17 23:08:40.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:40.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:40.078 -07 000000462 INF: FPGA: Recv ZSGSRD 35902
17-03-17 23:08:40.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:40.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:40.088 -07 000000593 INF: FPGA: Recv ZSGSRD 35902
17-03-17 23:08:40.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:40.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:40.098 -07 000000462 INF: FPGA: Recv ZSGSRD 35901
17-03-17 23:08:40.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:40.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:40.108 -07 000000482 INF: FPGA: Recv ZSGSRD 35895
17-03-17 23:08:40.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:40.118 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:08:40.118 -07 000000502 INF: FPGA: Recv ZPIEZORD 31861
17-03-17 23:08:40.128 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:40.128 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.698 V. Piezo Error = -8.9 V.
17-03-17 23:08:40.128 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.9 um, Read 10 ADC samples: Avg = 35898 (-170.1 uncal um), Error = 0.9 uncal um, Median = 35900 (-170.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35890 (-170.0 uncal um), Max = 35902 (-170.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 23:08:40.128 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35898, posNoise = 4, negNoise = 8
17-03-17 23:08:40.128 -07 000000610 INF: Z Motor: After move to -0.170936, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:08:40.128 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 23:08:40.128 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:08:40.128 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:08:40.128 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:08:40.128 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:08:40.128 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:08:40.128 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:08:40.128 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:08:40.128 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:08:40.128 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 23:08:40.128 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:08:40.128 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:08:40.128 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:08:40.128 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:08:40.138 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:08:40.138 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:08:40.138 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:08:40.138 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 23:08:40.138 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 23:08:40.148 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 23:08:40.148 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 23:08:40.158 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 468 468 225 225 37518 150\n [Camera]
17-03-17 23:08:40.358 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:08:40.828 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 660
17-03-17 23:08:40.828 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 660
17-03-17 23:08:40.828 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:08:40.828 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:08:40.828 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 23:08:40.828 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 660
17-03-17 23:08:40.828 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 660
17-03-17 23:08:40.828 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:08:40.948 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:08:40.948 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 23:08:41.018 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37518 853
17-03-17 23:08:41.168 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1003
17-03-17 23:08:41.208 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 23:08:41.208 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 23:08:41.208 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:08:41.218 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:08:41.218 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 23:08:41.328 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 23:08:41.328 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 23:08:41.328 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:08:41.338 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 23:08:41.338 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 511 ms.
17-03-17 23:08:41.388 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1228
17-03-17 23:08:41.388 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1228
17-03-17 23:08:41.388 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:08:41.398 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1228
17-03-17 23:08:41.398 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1228
17-03-17 23:08:41.398 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:08:41.408 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:08:41.408 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 23:08:41.408 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:08:41.408 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-17 23:08:41.588 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP 1421
17-03-17 23:08:41.588 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:08:41.588 -07 000000610 INF: FPGA: 'CAMDBLSNAP 468 468 225 225 37518 150' command took 3 ms to send, 1421 ms to get response, and 1428 ms overall
17-03-17 23:08:41.588 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:08:41.588 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39501953125, Z-Position -0.17093971947607. ------
17-03-17 23:08:41.588 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:08:41.588 -07 000000593 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17747 mm
17-03-17 23:08:41.588 -07 000000593 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:08:41.588 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:08:41.598 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:08:41.598 -07 000000475 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:08:41.598 -07 000000478 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 23:08:41.598 -07 000000478 INF: Y Motor: Moving to 63.2326 mm, started at 62.3950 mm, delta = 0.8376 mm
17-03-17 23:08:41.598 -07 000000409 INF: Z Motor: Entering MoveAbsStepped (DAC = 38769, sync = True, waitForSettling = False)
17-03-17 23:08:41.598 -07 000000409 INF: Z Motor: Moving to -0.177473 mm, started at -0.170940 mm, distance = -6.53 um
17-03-17 23:08:41.608 -07 000000409 INF: FPGA: Xmit ZDACW 38769\n [Z Motor]
17-03-17 23:08:41.608 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 23:08:41.618 -07 000000409 INF: FPGA: 'ZDACW 38769' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 23:08:41.618 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:08:41.618 -07 000000502 INF: FPGA: Recv YRDPOS 127785
17-03-17 23:08:41.628 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 23:08:41.628 -07 000000478 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:08:41.628 -07 000000478 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:08:41.628 -07 000000478 INF: Y Motor: Moving 1340 steps-16
17-03-17 23:08:41.628 -07 000000478 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:08:41.638 -07 000000409 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:08:41.638 -07 000000486 INF: FPGA: Recv ZDACR 38769
17-03-17 23:08:41.648 -07 000000409 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:08:41.648 -07 000000409 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 23:08:41.788 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 23:08:41.788 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 23:08:41.788 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:08:41.798 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 23:08:41.798 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 23:08:41.798 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:08:41.798 -07 000000541 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:08:41.798 -07 000000475 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:08:41.798 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:08:41.798 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:08:41.798 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 23:08:41.808 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 23:08:41.998 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-17 23:08:41.998 -07 000000478 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-17 23:08:42.038 -07 000000409 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:08:42.038 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 71. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1150, R2=1196, Total=2346. Warn if over 250 bubbles per interval.
17-03-17 23:08:42.038 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:08:42.048 -07 000000448 INF: FPGA: Recv YRDPOS 129482
17-03-17 23:08:42.048 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 23:08:42.048 -07 000000478 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:08:42.048 -07 000000478 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 23:08:42.048 -07 000000478 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.838 mm, average velocity = 2.216 mm/sec
17-03-17 23:08:42.998 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:08:42.998 -07 000000551 INF: FPGA: Recv YRDPOS 129482
17-03-17 23:08:43.008 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:08:43.008 -07 000000478 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:08:43.028 -07 000000478 INF: Y Motor: After move to 63.232609, error = -0.008976, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:08:43.028 -07 000000478 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:08:43.028 -07 000000478 INF: Y Motor: Moved to 63.2236 after 1434 ms (table move)
17-03-17 23:08:43.028 -07 000000593 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177473 mm (DAC = 38769)
17-03-17 23:08:43.028 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:43.038 -07 000000502 INF: FPGA: Recv ZSGSRD 36921
17-03-17 23:08:43.038 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 23:08:43.038 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:43.038 -07 000000382 INF: FPGA: Recv ZSGSRD 36924
17-03-17 23:08:43.048 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:08:43.048 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:43.048 -07 000000415 INF: FPGA: Recv ZSGSRD 36914
17-03-17 23:08:43.058 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:43.058 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:43.058 -07 000000551 INF: FPGA: Recv ZSGSRD 36915
17-03-17 23:08:43.068 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:43.068 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:43.068 -07 000000482 INF: FPGA: Recv ZSGSRD 36929
17-03-17 23:08:43.078 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:43.078 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:43.078 -07 000000627 INF: FPGA: Recv ZSGSRD 36928
17-03-17 23:08:43.088 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:43.088 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:43.088 -07 000000448 INF: FPGA: Recv ZSGSRD 36919
17-03-17 23:08:43.098 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:43.098 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:43.098 -07 000000409 INF: FPGA: Recv ZSGSRD 36909
17-03-17 23:08:43.108 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:43.108 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:43.108 -07 000000462 INF: FPGA: Recv ZSGSRD 36908
17-03-17 23:08:43.118 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:43.118 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:43.118 -07 000000478 INF: FPGA: Recv ZSGSRD 36917
17-03-17 23:08:43.128 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:43.128 -07 000000593 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:08:43.128 -07 000000561 INF: FPGA: Recv ZPIEZORD 33254
17-03-17 23:08:43.138 -07 000000593 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:43.138 -07 000000593 INF: Z Motor: Piezo is near 51.0 V (nominally 0 to 100 V), expect near 59.2 V, since DAC is at 5.916 V. Piezo Error = -8.1 V.
17-03-17 23:08:43.138 -07 000000593 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.5 um, Read 10 ADC samples: Avg = 36918 (-176.6 uncal um), Error = 0.9 uncal um, Median = 36918 (-176.6 uncal um), StdDev = 7 (0.0 uncal um), Range = 21 (0.1 uncal um), Min = 36908 (-176.5 uncal um), Max = 36929 (-176.7 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 23:08:43.138 -07 000000593 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36918, posNoise = 11, negNoise = 10
17-03-17 23:08:43.138 -07 000000593 INF: Z Motor: After move to -0.177473, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:08:43.138 -07 000000593 INF: Z Motor: Settle wait time = 1437 ms, measure time = 102 ms (allowed 150 ms), total time = 1539 ms
17-03-17 23:08:43.138 -07 000000593 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 23:08:43.188 -07 000000593 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1593 ms
17-03-17 23:08:43.188 -07 000000593 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:08:43.188 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:08:43.188 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:08:43.188 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:08:43.188 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:08:43.188 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:08:43.188 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:08:43.188 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:08:43.188 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:08:43.198 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:08:43.198 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:08:43.198 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 23:08:43.198 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 23:08:43.208 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 72, FrontChillerTemperature: 3.993549,
17-03-17 23:08:43.228 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:08:43.268 -07 000000593 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:08:43.468 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:08:43.468 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:08:43.468 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:08:43.588 -07 000000382 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:08:43.598 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 23:08:43.598 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 360 ms to get response, and 388 ms overall
17-03-17 23:08:43.598 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1165594328, 0x0, 559484976) start.
17-03-17 23:08:43.708 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1165594328, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 23:08:43.708 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:08:43.708 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:08:43.708 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 241 ms.
17-03-17 23:08:43.798 -07 000000478 INF: Autofocus start
17-03-17 23:08:43.798 -07 000000478 INF: MeasureProfile start
17-03-17 23:08:43.798 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:08:43.798 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:08:43.808 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:08:43.808 -07 000000486 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:08:43.808 -07 000000478 INF: MeasureProfile done
17-03-17 23:08:43.808 -07 000000478 INF: X=16  Z correction [um]=0.01042744
17-03-17 23:08:43.808 -07 000000478 INF: Autofocus finished
17-03-17 23:08:44.008 -07 000000547 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:08:44.008 -07 000000486 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:08:44.008 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.2236328125, Z-position -0.177492415860666. ----------
17-03-17 23:08:44.018 -07 000000610 INF: Cycle	72	Tile	5	Exposure Settings		A	468	G	225	T	225	C	468
17-03-17 23:08:44.018 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37284, sync = True, waitForSettling = True)
17-03-17 23:08:44.018 -07 000000610 INF: Z Motor: Moving to -0.170675 mm, started at -0.177492 mm, distance = 6.82 um
17-03-17 23:08:44.018 -07 000000610 INF: FPGA: Xmit ZDACW 37284\n [Z Motor]
17-03-17 23:08:44.018 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 23:08:44.028 -07 000000610 INF: FPGA: 'ZDACW 37284' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:08:44.028 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:08:44.028 -07 000000547 INF: FPGA: Recv ZDACR 37284
17-03-17 23:08:44.038 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:44.038 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:08:44.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:44.188 -07 000000541 INF: FPGA: Recv ZSGSRD 35858
17-03-17 23:08:44.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:44.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:44.198 -07 000000547 INF: FPGA: Recv ZSGSRD 35858
17-03-17 23:08:44.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:44.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:44.208 -07 000000475 INF: FPGA: Recv ZSGSRD 35858
17-03-17 23:08:44.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:44.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:44.218 -07 000000501 INF: FPGA: Recv ZSGSRD 35854
17-03-17 23:08:44.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:44.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:44.228 -07 000000482 INF: FPGA: Recv ZSGSRD 35862
17-03-17 23:08:44.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:44.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:44.238 -07 000000561 INF: FPGA: Recv ZSGSRD 35864
17-03-17 23:08:44.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:44.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:44.248 -07 000000409 INF: FPGA: Recv ZSGSRD 35861
17-03-17 23:08:44.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:44.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:44.258 -07 000000576 INF: FPGA: Recv ZSGSRD 35858
17-03-17 23:08:44.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:44.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:44.268 -07 000000462 INF: FPGA: Recv ZSGSRD 35851
17-03-17 23:08:44.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:44.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:44.278 -07 000000415 INF: FPGA: Recv ZSGSRD 35864
17-03-17 23:08:44.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:44.288 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:08:44.288 -07 000000576 INF: FPGA: Recv ZPIEZORD 31797
17-03-17 23:08:44.298 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:44.298 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.689 V. Piezo Error = -9.0 V.
17-03-17 23:08:44.298 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.7 um, Read 10 ADC samples: Avg = 35859 (-169.8 uncal um), Error = 0.9 uncal um, Median = 35858 (-169.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35851 (-169.8 uncal um), Max = 35864 (-169.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 23:08:44.298 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35859, posNoise = 5, negNoise = 8
17-03-17 23:08:44.298 -07 000000610 INF: Z Motor: After move to -0.170675, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:08:44.298 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 23:08:44.298 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:08:44.298 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:08:44.298 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:08:44.298 -07 000000409 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:08:44.298 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:08:44.298 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:08:44.298 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:08:44.298 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:08:44.298 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:08:44.298 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:08:44.298 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:08:44.298 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:08:44.308 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:08:44.308 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:08:44.308 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:08:44.308 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:08:44.318 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 23:08:44.318 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 23:08:44.318 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 23:08:44.318 -07 000000409 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 23:08:44.318 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 468 468 225 225 37460 150\n [Camera]
17-03-17 23:08:44.518 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:08:44.988 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 660
17-03-17 23:08:44.988 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 660
17-03-17 23:08:44.988 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:08:44.988 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 660
17-03-17 23:08:44.988 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 660
17-03-17 23:08:44.988 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:08:44.998 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:08:44.998 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 23:08:44.998 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:08:44.998 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 23:08:45.188 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37460 855
17-03-17 23:08:45.328 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1003
17-03-17 23:08:45.388 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 23:08:45.388 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 23:08:45.388 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:08:45.388 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 23:08:45.388 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 23:08:45.388 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:08:45.398 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:08:45.398 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 23:08:45.398 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:08:45.408 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 23:08:45.558 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1228
17-03-17 23:08:45.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1228
17-03-17 23:08:45.558 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:08:45.558 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1228
17-03-17 23:08:45.558 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1228
17-03-17 23:08:45.558 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:08:45.558 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:08:45.558 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1175865104, 0x0, 418435064) start.
17-03-17 23:08:45.558 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:08:45.558 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-17 23:08:45.748 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP 1420
17-03-17 23:08:45.748 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:08:45.748 -07 000000610 INF: FPGA: 'CAMDBLSNAP 468 468 225 225 37460 150' command took 2 ms to send, 1415 ms to get response, and 1428 ms overall
17-03-17 23:08:45.748 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:08:45.748 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.2236328125, Z-Position -0.170689175202541. ------
17-03-17 23:08:45.758 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:08:45.758 -07 000000478 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17701 mm
17-03-17 23:08:45.758 -07 000000478 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:08:45.758 -07 000000482 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 23:08:45.758 -07 000000448 INF: Z Motor: Entering MoveAbsStepped (DAC = 38669, sync = True, waitForSettling = False)
17-03-17 23:08:45.758 -07 000000448 INF: Z Motor: Moving to -0.177015 mm, started at -0.170689 mm, distance = -6.33 um
17-03-17 23:08:45.758 -07 000000482 INF: Y Motor: Moving to 64.0626 mm, started at 63.2236 mm, delta = 0.8390 mm
17-03-17 23:08:45.758 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:08:45.768 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:08:45.768 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:08:45.768 -07 000000415 INF: FPGA: Recv YRDPOS 129482
17-03-17 23:08:45.778 -07 000000448 INF: FPGA: Xmit ZDACW 38669\n [Z Motor]
17-03-17 23:08:45.778 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 23:08:45.778 -07 000000482 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:08:45.778 -07 000000482 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:08:45.778 -07 000000482 INF: Y Motor: Moving 1342 steps-18
17-03-17 23:08:45.778 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 23:08:45.788 -07 000000551 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:08:45.788 -07 000000448 INF: FPGA: 'ZDACW 38669' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 23:08:45.798 -07 000000482 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:08:45.808 -07 000000448 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:08:45.808 -07 000000462 INF: FPGA: Recv ZDACR 38669
17-03-17 23:08:45.818 -07 000000448 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:08:45.818 -07 000000448 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-17 23:08:45.958 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 23:08:45.958 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 23:08:45.958 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:08:45.958 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1175865104, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 23:08:45.958 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 23:08:45.958 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:08:45.968 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:08:45.968 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 23:08:45.968 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 23:08:45.968 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 23:08:45.988 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:08:45.988 -07 000000551 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 23:08:46.168 -07 000000409 INF: FPGA: Recv YMVTILE
17-03-17 23:08:46.168 -07 000000482 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 23:08:46.208 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:08:46.218 -07 000000475 INF: FPGA: Recv YRDPOS 131187
17-03-17 23:08:46.218 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 23:08:46.218 -07 000000482 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:08:46.218 -07 000000482 INF: Y Motor: Position error before settling (table move) = -13 encoder counts (-0.006 mm)
17-03-17 23:08:46.218 -07 000000482 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.113 mm/sec
17-03-17 23:08:47.038 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:08:47.038 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 71. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1150, R2=1196, Total=2346. Warn if over 250 bubbles per interval.
17-03-17 23:08:47.168 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:08:47.168 -07 000000627 INF: FPGA: Recv YRDPOS 131187
17-03-17 23:08:47.178 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:47.178 -07 000000482 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:08:47.198 -07 000000482 INF: Y Motor: After move to 64.062607, error = -0.006454, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:08:47.198 -07 000000482 INF: Y Motor: Position error after settling (table move) = -13 encoder counts (-0.006 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:08:47.198 -07 000000482 INF: Y Motor: Moved to 64.0562 after 1439 ms (table move)
17-03-17 23:08:47.198 -07 000000478 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177015 mm (DAC = 38669)
17-03-17 23:08:47.198 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:47.208 -07 000000429 INF: FPGA: Recv ZSGSRD 36852
17-03-17 23:08:47.208 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 23:08:47.208 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:47.208 -07 000000618 INF: FPGA: Recv ZSGSRD 36844
17-03-17 23:08:47.218 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:08:47.218 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:47.218 -07 000000448 INF: FPGA: Recv ZSGSRD 36846
17-03-17 23:08:47.228 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:47.228 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:47.228 -07 000000547 INF: FPGA: Recv ZSGSRD 36852
17-03-17 23:08:47.238 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:47.238 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:47.238 -07 000000576 INF: FPGA: Recv ZSGSRD 36852
17-03-17 23:08:47.248 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:47.248 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:47.248 -07 000000627 INF: FPGA: Recv ZSGSRD 36851
17-03-17 23:08:47.258 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:47.258 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:47.258 -07 000000415 INF: FPGA: Recv ZSGSRD 36845
17-03-17 23:08:47.268 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:47.268 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:47.268 -07 000000501 INF: FPGA: Recv ZSGSRD 36843
17-03-17 23:08:47.278 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:47.278 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:47.278 -07 000000475 INF: FPGA: Recv ZSGSRD 36840
17-03-17 23:08:47.288 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:47.288 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:47.288 -07 000000462 INF: FPGA: Recv ZSGSRD 36848
17-03-17 23:08:47.298 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:47.298 -07 000000478 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:08:47.298 -07 000000382 INF: FPGA: Recv ZPIEZORD 33122
17-03-17 23:08:47.308 -07 000000478 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:47.308 -07 000000478 INF: Z Motor: Piezo is near 50.8 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.901 V. Piezo Error = -8.2 V.
17-03-17 23:08:47.308 -07 000000478 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.0 um, Read 10 ADC samples: Avg = 36847 (-176.1 uncal um), Error = 0.9 uncal um, Median = 36847 (-176.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36840 (-176.1 uncal um), Max = 36852 (-176.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 23:08:47.308 -07 000000478 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36847, posNoise = 5, negNoise = 7
17-03-17 23:08:47.308 -07 000000478 INF: Z Motor: After move to -0.177015, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:08:47.308 -07 000000478 INF: Z Motor: Settle wait time = 1442 ms, measure time = 102 ms (allowed 150 ms), total time = 1544 ms
17-03-17 23:08:47.308 -07 000000478 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 23:08:47.358 -07 000000478 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1597 ms
17-03-17 23:08:47.358 -07 000000478 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:08:47.358 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:08:47.358 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:08:47.358 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:08:47.358 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:08:47.358 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:08:47.358 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:08:47.358 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:08:47.358 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:08:47.368 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:08:47.368 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:08:47.368 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 23:08:47.368 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 23:08:47.378 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:08:47.428 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:08:47.628 -07 000000482 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:08:47.628 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:08:47.628 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:08:47.628 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 617479552, 0x0, 559484976) start.
17-03-17 23:08:47.658 -07 000000415 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:08:47.668 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 23:08:47.668 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 287 ms overall
17-03-17 23:08:47.748 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 617479552, 0x0, 559484976) end. Duration was 118 ms.
17-03-17 23:08:47.748 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:08:47.748 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 23:08:47.748 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 122 ms.
17-03-17 23:08:47.768 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:08:47.768 -07 000000561 INF: Autofocus start
17-03-17 23:08:47.768 -07 000000561 INF: MeasureProfile start
17-03-17 23:08:47.768 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:08:47.778 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:08:47.778 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:08:47.788 -07 000000561 INF: MeasureProfile done
17-03-17 23:08:47.788 -07 000000561 INF: X=32  Z correction [um]=0.09220707
17-03-17 23:08:47.788 -07 000000561 INF: Autofocus finished
17-03-17 23:08:47.978 -07 000000409 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:08:47.978 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:08:47.978 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05615234375, Z-position -0.177036296798601. ----------
17-03-17 23:08:47.988 -07 000000610 INF: Cycle	72	Tile	6	Exposure Settings		A	468	G	225	T	225	C	468
17-03-17 23:08:47.988 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37201, sync = True, waitForSettling = True)
17-03-17 23:08:47.988 -07 000000610 INF: Z Motor: Moving to -0.170295 mm, started at -0.177036 mm, distance = 6.74 um
17-03-17 23:08:47.988 -07 000000610 INF: FPGA: Xmit ZDACW 37201\n [Z Motor]
17-03-17 23:08:47.988 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 23:08:47.998 -07 000000610 INF: FPGA: 'ZDACW 37201' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:08:47.998 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:08:47.998 -07 000000409 INF: FPGA: Recv ZDACR 37201
17-03-17 23:08:48.008 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:48.008 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:08:48.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:48.158 -07 000000593 INF: FPGA: Recv ZSGSRD 35802
17-03-17 23:08:48.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:08:48.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:48.168 -07 000000561 INF: FPGA: Recv ZSGSRD 35806
17-03-17 23:08:48.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:48.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:48.178 -07 000000547 INF: FPGA: Recv ZSGSRD 35798
17-03-17 23:08:48.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:48.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:48.188 -07 000000482 INF: FPGA: Recv ZSGSRD 35801
17-03-17 23:08:48.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:48.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:48.198 -07 000000448 INF: FPGA: Recv ZSGSRD 35796
17-03-17 23:08:48.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:48.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:48.208 -07 000000382 INF: FPGA: Recv ZSGSRD 35800
17-03-17 23:08:48.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:48.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:48.218 -07 000000502 INF: FPGA: Recv ZSGSRD 35800
17-03-17 23:08:48.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:48.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:48.228 -07 000000547 INF: FPGA: Recv ZSGSRD 35799
17-03-17 23:08:48.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:48.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:48.238 -07 000000551 INF: FPGA: Recv ZSGSRD 35795
17-03-17 23:08:48.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:48.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:48.248 -07 000000541 INF: FPGA: Recv ZSGSRD 35797
17-03-17 23:08:48.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:48.258 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:08:48.258 -07 000000382 INF: FPGA: Recv ZPIEZORD 31756
17-03-17 23:08:48.268 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:48.268 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.677 V. Piezo Error = -8.9 V.
17-03-17 23:08:48.268 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.3 um, Read 10 ADC samples: Avg = 35799 (-169.4 uncal um), Error = 0.9 uncal um, Median = 35800 (-169.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35795 (-169.4 uncal um), Max = 35806 (-169.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:08:48.268 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35799, posNoise = 7, negNoise = 4
17-03-17 23:08:48.268 -07 000000610 INF: Z Motor: After move to -0.170295, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:08:48.268 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 23:08:48.268 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:08:48.268 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:08:48.268 -07 000000409 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:08:48.268 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:08:48.268 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:08:48.268 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:08:48.268 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:08:48.268 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:08:48.268 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:08:48.268 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:08:48.268 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:08:48.268 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:08:48.278 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:08:48.278 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:08:48.278 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:08:48.278 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:08:48.278 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 23:08:48.278 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:08:48.288 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 23:08:48.288 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 23:08:48.288 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 468 468 225 225 37378 150\n [Camera]
17-03-17 23:08:48.488 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:08:48.588 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 72, FrontChillerTemperature: 4.005817,
17-03-17 23:08:48.958 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 660
17-03-17 23:08:48.958 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 660
17-03-17 23:08:48.958 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:08:48.958 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:08:48.958 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1414856408, 0x0, 391868352) start.
17-03-17 23:08:48.958 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 660
17-03-17 23:08:48.958 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 660
17-03-17 23:08:48.958 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:08:48.958 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:08:48.958 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1450278672, 0x0, 418435064) start.
17-03-17 23:08:49.148 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37378 856
17-03-17 23:08:49.298 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1003
17-03-17 23:08:49.338 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1450278672, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 23:08:49.338 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 23:08:49.338 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:08:49.338 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1414856408, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 23:08:49.338 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 23:08:49.338 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:08:49.338 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:08:49.338 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:08:49.338 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 23:08:49.348 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 23:08:49.518 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1228
17-03-17 23:08:49.518 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1228
17-03-17 23:08:49.518 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:08:49.528 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1228
17-03-17 23:08:49.528 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1228
17-03-17 23:08:49.528 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:08:49.528 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:08:49.528 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1410451104, 0x0, 418435064) start.
17-03-17 23:08:49.528 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:08:49.528 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 23:08:49.708 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP 1421
17-03-17 23:08:49.718 -07 000000623 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:08:49.718 -07 000000610 INF: FPGA: 'CAMDBLSNAP 468 468 225 225 37378 150' command took 2 ms to send, 1420 ms to get response, and 1428 ms overall
17-03-17 23:08:49.718 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:08:49.718 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05615234375, Z-Position -0.170303722474035. ------
17-03-17 23:08:49.718 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:08:49.718 -07 000000475 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17680 mm
17-03-17 23:08:49.718 -07 000000475 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:08:49.718 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:08:49.728 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:08:49.728 -07 000000478 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:08:49.728 -07 000000482 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 23:08:49.728 -07 000000482 INF: Y Motor: Moving to 64.8926 mm, started at 64.0562 mm, delta = 0.8365 mm
17-03-17 23:08:49.728 -07 000000448 INF: Z Motor: Entering MoveAbsStepped (DAC = 38623, sync = True, waitForSettling = False)
17-03-17 23:08:49.728 -07 000000448 INF: Z Motor: Moving to -0.176805 mm, started at -0.170304 mm, distance = -6.50 um
17-03-17 23:08:49.738 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:08:49.738 -07 000000462 INF: FPGA: Recv YRDPOS 131188
17-03-17 23:08:49.748 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 23:08:49.748 -07 000000482 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:08:49.748 -07 000000448 INF: FPGA: Xmit ZDACW 38623\n [Z Motor]
17-03-17 23:08:49.748 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 23:08:49.748 -07 000000482 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:08:49.748 -07 000000482 INF: Y Motor: Moving 1338 steps-13
17-03-17 23:08:49.758 -07 000000448 INF: FPGA: 'ZDACW 38623' command took 1 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 23:08:49.758 -07 000000448 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:08:49.758 -07 000000415 INF: FPGA: Recv ZDACR 38623
17-03-17 23:08:49.768 -07 000000482 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:08:49.768 -07 000000448 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:08:49.768 -07 000000448 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-17 23:08:49.928 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:08:49.928 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 23:08:49.928 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 23:08:49.928 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:08:49.928 -07 000000478 INF: FPGA: 'FOCMRRFOC' command took 2 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:08:49.928 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1410451104, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 23:08:49.928 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 23:08:49.928 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:08:49.928 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:08:49.928 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 23:08:49.928 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:08:49.938 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 23:08:50.138 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 23:08:50.138 -07 000000482 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 23:08:50.178 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:08:50.188 -07 000000478 INF: FPGA: Recv YRDPOS 132870
17-03-17 23:08:50.188 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 23:08:50.188 -07 000000482 INF: Y Motor: Encoder = 132870 = motor step 103804.7 = 64.8779 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:08:50.188 -07 000000482 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 23:08:50.188 -07 000000482 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.836 mm, average velocity = 2.118 mm/sec
17-03-17 23:08:51.138 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:08:51.138 -07 000000486 INF: FPGA: Recv YRDPOS 132871
17-03-17 23:08:51.148 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:08:51.148 -07 000000482 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:08:51.178 -07 000000482 INF: Y Motor: After move to 64.892609, error = -0.014191, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:08:51.178 -07 000000482 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 23:08:51.178 -07 000000482 INF: Y Motor: Moved to 64.8784 after 1452 ms (table move)
17-03-17 23:08:51.188 -07 000000475 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176805 mm (DAC = 38623)
17-03-17 23:08:51.188 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:51.188 -07 000000627 INF: FPGA: Recv ZSGSRD 36812
17-03-17 23:08:51.198 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:08:51.198 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:51.198 -07 000000482 INF: FPGA: Recv ZSGSRD 36820
17-03-17 23:08:51.208 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:51.208 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:51.208 -07 000000429 INF: FPGA: Recv ZSGSRD 36812
17-03-17 23:08:51.218 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:51.218 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:51.218 -07 000000482 INF: FPGA: Recv ZSGSRD 36808
17-03-17 23:08:51.228 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:51.228 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:51.228 -07 000000593 INF: FPGA: Recv ZSGSRD 36813
17-03-17 23:08:51.238 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:51.238 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:51.238 -07 000000409 INF: FPGA: Recv ZSGSRD 36808
17-03-17 23:08:51.248 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:51.248 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:51.248 -07 000000576 INF: FPGA: Recv ZSGSRD 36808
17-03-17 23:08:51.258 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:51.258 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:51.258 -07 000000382 INF: FPGA: Recv ZSGSRD 36805
17-03-17 23:08:51.268 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:51.268 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:51.268 -07 000000618 INF: FPGA: Recv ZSGSRD 36811
17-03-17 23:08:51.278 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:51.278 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:51.278 -07 000000551 INF: FPGA: Recv ZSGSRD 36823
17-03-17 23:08:51.288 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:51.288 -07 000000475 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:08:51.288 -07 000000478 INF: FPGA: Recv ZPIEZORD 33085
17-03-17 23:08:51.298 -07 000000475 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:51.298 -07 000000475 INF: Z Motor: Piezo is near 50.7 V (nominally 0 to 100 V), expect near 58.9 V, since DAC is at 5.893 V. Piezo Error = -8.3 V.
17-03-17 23:08:51.298 -07 000000475 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.8 um, Read 10 ADC samples: Avg = 36812 (-175.9 uncal um), Error = 0.9 uncal um, Median = 36812 (-175.9 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36805 (-175.9 uncal um), Max = 36823 (-176.0 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 23:08:51.298 -07 000000475 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36812, posNoise = 11, negNoise = 7
17-03-17 23:08:51.298 -07 000000475 INF: Z Motor: After move to -0.176805, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:08:51.298 -07 000000475 INF: Z Motor: Settle wait time = 1458 ms, measure time = 109 ms (allowed 150 ms), total time = 1567 ms
17-03-17 23:08:51.298 -07 000000475 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 23:08:51.348 -07 000000475 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1623 ms
17-03-17 23:08:51.348 -07 000000475 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:08:51.348 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:08:51.348 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:08:51.348 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:08:51.348 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:08:51.348 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:08:51.348 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:08:51.348 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:08:51.348 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:08:51.358 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:08:51.358 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:08:51.358 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 23:08:51.358 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 23:08:51.368 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:08:51.408 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:08:51.608 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:08:51.608 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:08:51.608 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:08:51.608 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) start.
17-03-17 23:08:51.648 -07 000000547 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:08:51.648 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-17 23:08:51.648 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 23:08:51.728 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 23:08:51.728 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:08:51.728 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:08:51.728 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-17 23:08:51.748 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:08:51.748 -07 000000576 INF: Autofocus start
17-03-17 23:08:51.748 -07 000000576 INF: MeasureProfile start
17-03-17 23:08:51.748 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:08:51.758 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:08:51.758 -07 000000541 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:08:51.758 -07 000000576 INF: MeasureProfile done
17-03-17 23:08:51.758 -07 000000576 INF: X=-64  Z correction [um]=-0.4038377
17-03-17 23:08:51.758 -07 000000576 INF: Autofocus finished
17-03-17 23:08:51.958 -07 000000623 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:08:51.958 -07 000000541 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:08:51.958 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87841796875, Z-position -0.176811449373639. ----------
17-03-17 23:08:51.958 -07 000000610 INF: Cycle	72	Tile	7	Exposure Settings		A	468	G	225	T	225	C	468
17-03-17 23:08:51.968 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37047, sync = True, waitForSettling = True)
17-03-17 23:08:51.968 -07 000000610 INF: Z Motor: Moving to -0.169590 mm, started at -0.176811 mm, distance = 7.22 um
17-03-17 23:08:51.968 -07 000000610 INF: FPGA: Xmit ZDACW 37047\n [Z Motor]
17-03-17 23:08:51.968 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 23:08:51.978 -07 000000610 INF: FPGA: 'ZDACW 37047' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:08:51.978 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:08:51.978 -07 000000502 INF: FPGA: Recv ZDACR 37047
17-03-17 23:08:51.988 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:51.988 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:08:52.038 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:08:52.038 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 71. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1150, R2=1196, Total=2346. Warn if over 250 bubbles per interval.
17-03-17 23:08:52.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:52.138 -07 000000486 INF: FPGA: Recv ZSGSRD 35690
17-03-17 23:08:52.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:08:52.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:52.148 -07 000000478 INF: FPGA: Recv ZSGSRD 35678
17-03-17 23:08:52.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:52.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:52.158 -07 000000623 INF: FPGA: Recv ZSGSRD 35687
17-03-17 23:08:52.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:52.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:52.168 -07 000000547 INF: FPGA: Recv ZSGSRD 35692
17-03-17 23:08:52.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:52.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:52.178 -07 000000593 INF: FPGA: Recv ZSGSRD 35687
17-03-17 23:08:52.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:52.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:52.188 -07 000000409 INF: FPGA: Recv ZSGSRD 35691
17-03-17 23:08:52.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:52.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:52.198 -07 000000429 INF: FPGA: Recv ZSGSRD 35686
17-03-17 23:08:52.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:52.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:52.208 -07 000000576 INF: FPGA: Recv ZSGSRD 35692
17-03-17 23:08:52.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:52.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:52.218 -07 000000627 INF: FPGA: Recv ZSGSRD 35690
17-03-17 23:08:52.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:52.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:52.228 -07 000000593 INF: FPGA: Recv ZSGSRD 35687
17-03-17 23:08:52.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:52.238 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:08:52.238 -07 000000482 INF: FPGA: Recv ZPIEZORD 31570
17-03-17 23:08:52.248 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:52.248 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.653 V. Piezo Error = -9.1 V.
17-03-17 23:08:52.248 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.6 um, Read 10 ADC samples: Avg = 35688 (-168.7 uncal um), Error = 0.9 uncal um, Median = 35688 (-168.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35678 (-168.7 uncal um), Max = 35692 (-168.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 23:08:52.248 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35688, posNoise = 4, negNoise = 10
17-03-17 23:08:52.248 -07 000000610 INF: Z Motor: After move to -0.169590, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:08:52.248 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 23:08:52.248 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:08:52.248 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:08:52.248 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:08:52.248 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:08:52.248 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:08:52.248 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:08:52.248 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:08:52.248 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:08:52.248 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:08:52.248 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:08:52.248 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:08:52.248 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:08:52.258 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:08:52.258 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:08:52.258 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:08:52.258 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:08:52.268 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 23:08:52.268 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:08:52.268 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 23:08:52.268 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:08:52.268 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 468 468 225 225 37224 150\n [Camera]
17-03-17 23:08:52.468 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:08:52.938 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 660
17-03-17 23:08:52.938 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 660
17-03-17 23:08:52.938 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 660
17-03-17 23:08:52.938 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 660
17-03-17 23:08:52.938 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:08:52.938 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:08:52.938 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:08:53.048 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1445873368, 0x0, 391868352) start.
17-03-17 23:08:53.048 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:08:53.048 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 23:08:53.128 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37224 853
17-03-17 23:08:53.278 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1003
17-03-17 23:08:53.448 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 23:08:53.448 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 23:08:53.448 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:08:53.448 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1445873368, 0x0, 391868352) end. Duration was 505 ms.
17-03-17 23:08:53.448 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 505 ms.
17-03-17 23:08:53.448 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:08:53.448 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:08:53.448 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:08:53.448 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 510 ms.
17-03-17 23:08:53.458 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 516 ms.
17-03-17 23:08:53.498 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1228
17-03-17 23:08:53.498 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1228
17-03-17 23:08:53.508 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:08:53.508 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1228
17-03-17 23:08:53.508 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1228
17-03-17 23:08:53.508 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:08:53.508 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:08:53.508 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1481295632, 0x0, 418435064) start.
17-03-17 23:08:53.508 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:08:53.508 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1403846816, 0x0, 391868352) start.
17-03-17 23:08:53.698 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1421
17-03-17 23:08:53.698 -07 000000482 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:08:53.698 -07 000000610 INF: FPGA: 'CAMDBLSNAP 468 468 225 225 37224 150' command took 2 ms to send, 1421 ms to get response, and 1427 ms overall
17-03-17 23:08:53.698 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:08:53.698 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87841796875, Z-Position -0.1695906349263. ------
17-03-17 23:08:53.698 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:08:53.698 -07 000000409 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17623 mm
17-03-17 23:08:53.698 -07 000000409 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:08:53.698 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:08:53.708 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:08:53.708 -07 000000623 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:08:53.708 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 38497, sync = True, waitForSettling = False)
17-03-17 23:08:53.708 -07 000000561 INF: Z Motor: Moving to -0.176228 mm, started at -0.169591 mm, distance = -6.64 um
17-03-17 23:08:53.708 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 23:08:53.708 -07 000000541 INF: Y Motor: Moving to 65.7226 mm, started at 64.8784 mm, delta = 0.8442 mm
17-03-17 23:08:53.718 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:08:53.718 -07 000000382 INF: FPGA: Recv YRDPOS 132871
17-03-17 23:08:53.728 -07 000000561 INF: FPGA: Xmit ZDACW 38497\n [Z Motor]
17-03-17 23:08:53.728 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 23:08:53.728 -07 000000541 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:08:53.728 -07 000000541 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:08:53.728 -07 000000541 INF: Y Motor: Moving 1351 steps-30
17-03-17 23:08:53.728 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 23:08:53.738 -07 000000561 INF: FPGA: 'ZDACW 38497' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 23:08:53.738 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:08:53.748 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:08:53.748 -07 000000462 INF: FPGA: Recv ZDACR 38497
17-03-17 23:08:53.758 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:08:53.758 -07 000000561 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-17 23:08:53.908 -07 000000482 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:08:53.908 -07 000000623 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:08:53.908 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1481295632, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 23:08:53.908 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 23:08:53.908 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:08:53.908 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1403846816, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 23:08:53.908 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 23:08:53.908 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:08:53.908 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 23:08:53.908 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 23:08:53.908 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 23:08:53.918 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 23:08:53.948 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 72, FrontChillerTemperature: 4.018051,
17-03-17 23:08:54.108 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-17 23:08:54.108 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 23:08:54.148 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:08:54.158 -07 000000486 INF: FPGA: Recv YRDPOS 134581
17-03-17 23:08:54.158 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 23:08:54.158 -07 000000541 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:08:54.158 -07 000000541 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 23:08:54.158 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.844 mm, average velocity = 2.181 mm/sec
17-03-17 23:08:55.108 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:08:55.108 -07 000000561 INF: FPGA: Recv YRDPOS 134581
17-03-17 23:08:55.118 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:55.118 -07 000000541 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:08:55.148 -07 000000541 INF: Y Motor: After move to 65.722610, error = -0.009232, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:08:55.148 -07 000000541 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:08:55.148 -07 000000541 INF: Y Motor: Moved to 65.7134 after 1438 ms (table move)
17-03-17 23:08:55.148 -07 000000409 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176228 mm (DAC = 38497)
17-03-17 23:08:55.148 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:55.148 -07 000000547 INF: FPGA: Recv ZSGSRD 36730
17-03-17 23:08:55.158 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:08:55.158 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:55.158 -07 000000502 INF: FPGA: Recv ZSGSRD 36726
17-03-17 23:08:55.168 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:08:55.168 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:55.168 -07 000000627 INF: FPGA: Recv ZSGSRD 36723
17-03-17 23:08:55.178 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:55.178 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:55.178 -07 000000576 INF: FPGA: Recv ZSGSRD 36714
17-03-17 23:08:55.188 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:55.188 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:55.188 -07 000000475 INF: FPGA: Recv ZSGSRD 36723
17-03-17 23:08:55.198 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:55.198 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:55.198 -07 000000415 INF: FPGA: Recv ZSGSRD 36720
17-03-17 23:08:55.208 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:55.208 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:55.208 -07 000000502 INF: FPGA: Recv ZSGSRD 36720
17-03-17 23:08:55.218 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:55.218 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:55.218 -07 000000627 INF: FPGA: Recv ZSGSRD 36718
17-03-17 23:08:55.228 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:55.228 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:55.228 -07 000000593 INF: FPGA: Recv ZSGSRD 36723
17-03-17 23:08:55.238 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:55.238 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:55.238 -07 000000486 INF: FPGA: Recv ZSGSRD 36725
17-03-17 23:08:55.248 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:55.248 -07 000000409 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:08:55.248 -07 000000623 INF: FPGA: Recv ZPIEZORD 32973
17-03-17 23:08:55.258 -07 000000409 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:55.258 -07 000000409 INF: Z Motor: Piezo is near 50.4 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.874 V. Piezo Error = -8.3 V.
17-03-17 23:08:55.258 -07 000000409 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.2 um, Read 10 ADC samples: Avg = 36722 (-175.3 uncal um), Error = 0.9 uncal um, Median = 36723 (-175.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36714 (-175.3 uncal um), Max = 36730 (-175.4 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 23:08:55.258 -07 000000409 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36722, posNoise = 8, negNoise = 8
17-03-17 23:08:55.258 -07 000000409 INF: Z Motor: After move to -0.176228, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:08:55.258 -07 000000409 INF: Z Motor: Settle wait time = 1442 ms, measure time = 106 ms (allowed 150 ms), total time = 1548 ms
17-03-17 23:08:55.258 -07 000000409 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 23:08:55.308 -07 000000409 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-17 23:08:55.308 -07 000000409 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:08:55.308 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:08:55.308 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:08:55.308 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:08:55.308 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:08:55.308 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:08:55.308 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:08:55.308 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 23:08:55.308 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:08:55.318 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:08:55.318 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:08:55.328 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 23:08:55.328 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 23:08:55.328 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:08:55.378 -07 000000593 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:08:55.578 -07 000000448 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:08:55.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:08:55.578 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:08:55.578 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) start.
17-03-17 23:08:55.618 -07 000000501 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:08:55.618 -07 000000482 INF: FPGA: Recv CAMSNAP
17-03-17 23:08:55.618 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 23:08:55.688 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1389170736, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 23:08:55.688 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:08:55.688 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:08:55.688 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 23:08:55.718 -07 000000486 INF: Autofocus start
17-03-17 23:08:55.718 -07 000000486 INF: MeasureProfile start
17-03-17 23:08:55.718 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:08:55.718 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:08:55.728 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:08:55.728 -07 000000415 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:08:55.728 -07 000000486 INF: MeasureProfile done
17-03-17 23:08:55.728 -07 000000486 INF: X=0  Z correction [um]=-0.0713522
17-03-17 23:08:55.728 -07 000000486 INF: Autofocus finished
17-03-17 23:08:55.928 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:08:55.928 -07 000000415 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:08:55.928 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71337890625, Z-position -0.176233270280881. ----------
17-03-17 23:08:55.938 -07 000000610 INF: Cycle	72	Tile	8	Exposure Settings		A	468	G	225	T	225	C	468
17-03-17 23:08:55.938 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36994, sync = True, waitForSettling = True)
17-03-17 23:08:55.938 -07 000000610 INF: Z Motor: Moving to -0.169348 mm, started at -0.176233 mm, distance = 6.89 um
17-03-17 23:08:55.938 -07 000000610 INF: FPGA: Xmit ZDACW 36994\n [Z Motor]
17-03-17 23:08:55.938 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 23:08:55.948 -07 000000610 INF: FPGA: 'ZDACW 36994' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:08:55.948 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:08:55.948 -07 000000429 INF: FPGA: Recv ZDACR 36994
17-03-17 23:08:55.958 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:55.958 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:08:56.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:56.108 -07 000000448 INF: FPGA: Recv ZSGSRD 35655
17-03-17 23:08:56.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:08:56.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:56.118 -07 000000429 INF: FPGA: Recv ZSGSRD 35659
17-03-17 23:08:56.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:56.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:56.128 -07 000000448 INF: FPGA: Recv ZSGSRD 35644
17-03-17 23:08:56.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:56.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:56.138 -07 000000429 INF: FPGA: Recv ZSGSRD 35654
17-03-17 23:08:56.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:56.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:56.148 -07 000000409 INF: FPGA: Recv ZSGSRD 35648
17-03-17 23:08:56.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:56.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:56.158 -07 000000382 INF: FPGA: Recv ZSGSRD 35651
17-03-17 23:08:56.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:56.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:56.168 -07 000000501 INF: FPGA: Recv ZSGSRD 35654
17-03-17 23:08:56.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:56.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:56.178 -07 000000478 INF: FPGA: Recv ZSGSRD 35651
17-03-17 23:08:56.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:56.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:56.188 -07 000000448 INF: FPGA: Recv ZSGSRD 35651
17-03-17 23:08:56.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:56.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:56.198 -07 000000462 INF: FPGA: Recv ZSGSRD 35649
17-03-17 23:08:56.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:56.208 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:08:56.208 -07 000000502 INF: FPGA: Recv ZPIEZORD 31547
17-03-17 23:08:56.218 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:56.218 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.645 V. Piezo Error = -9.1 V.
17-03-17 23:08:56.218 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.3 um, Read 10 ADC samples: Avg = 35652 (-168.5 uncal um), Error = 0.9 uncal um, Median = 35651 (-168.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35644 (-168.4 uncal um), Max = 35659 (-168.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 23:08:56.218 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35652, posNoise = 7, negNoise = 8
17-03-17 23:08:56.218 -07 000000610 INF: Z Motor: After move to -0.169348, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:08:56.218 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 23:08:56.218 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:08:56.218 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:08:56.218 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:08:56.218 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:08:56.218 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:08:56.218 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:08:56.218 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:08:56.218 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:08:56.218 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:08:56.218 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:08:56.218 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:08:56.218 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:08:56.228 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:08:56.228 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:08:56.228 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:08:56.228 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:08:56.238 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 23:08:56.238 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:08:56.238 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 23:08:56.238 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 23:08:56.238 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 468 468 225 225 37171 150\n [Camera]
17-03-17 23:08:56.438 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:08:56.908 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 660
17-03-17 23:08:56.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 660
17-03-17 23:08:56.908 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:08:56.908 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:08:56.908 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 23:08:56.908 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 660
17-03-17 23:08:56.908 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 660
17-03-17 23:08:56.908 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:08:56.908 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:08:56.908 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-17 23:08:57.038 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:08:57.038 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 71. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1150, R2=1196, Total=2346. Warn if over 250 bubbles per interval.
17-03-17 23:08:57.098 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37171 853
17-03-17 23:08:57.248 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1005
17-03-17 23:08:57.298 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 23:08:57.298 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 23:08:57.298 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:08:57.298 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 23:08:57.298 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 23:08:57.298 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:08:57.298 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 23:08:57.298 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 23:08:57.298 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:08:57.308 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 23:08:57.478 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1228
17-03-17 23:08:57.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1228
17-03-17 23:08:57.478 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:08:57.478 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:08:57.478 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-17 23:08:57.478 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1228
17-03-17 23:08:57.478 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1228
17-03-17 23:08:57.478 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:08:57.478 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:08:57.478 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 23:08:57.668 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1421
17-03-17 23:08:57.668 -07 000000409 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:08:57.668 -07 000000610 INF: FPGA: 'CAMDBLSNAP 468 468 225 225 37171 150' command took 2 ms to send, 1424 ms to get response, and 1428 ms overall
17-03-17 23:08:57.668 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:08:57.668 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71337890625, Z-Position -0.169359363289197. ------
17-03-17 23:08:57.668 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:08:57.668 -07 000000429 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17569 mm
17-03-17 23:08:57.668 -07 000000429 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:08:57.678 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:08:57.678 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 23:08:57.678 -07 000000627 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:08:57.678 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 38380, sync = True, waitForSettling = False)
17-03-17 23:08:57.678 -07 000000382 INF: Z Motor: Moving to -0.175692 mm, started at -0.169359 mm, distance = -6.33 um
17-03-17 23:08:57.678 -07 000000486 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 23:08:57.678 -07 000000486 INF: Y Motor: Moving to 66.5526 mm, started at 65.7134 mm, delta = 0.8392 mm
17-03-17 23:08:57.688 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:08:57.688 -07 000000551 INF: FPGA: Recv YRDPOS 134581
17-03-17 23:08:57.698 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 23:08:57.698 -07 000000486 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:08:57.698 -07 000000486 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:08:57.698 -07 000000486 INF: Y Motor: Moving 1343 steps-19
17-03-17 23:08:57.698 -07 000000382 INF: FPGA: Xmit ZDACW 38380\n [Z Motor]
17-03-17 23:08:57.698 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 23:08:57.708 -07 000000382 INF: FPGA: 'ZDACW 38380' command took 1 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 23:08:57.708 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:08:57.708 -07 000000448 INF: FPGA: Recv ZDACR 38380
17-03-17 23:08:57.718 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:57.718 -07 000000382 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-17 23:08:57.718 -07 000000486 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:08:57.878 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:08:57.878 -07 000000627 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 202 ms overall
17-03-17 23:08:57.878 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 23:08:57.888 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 23:08:57.888 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:08:57.888 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 23:08:57.888 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 23:08:57.888 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:08:57.888 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:08:57.888 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 23:08:57.888 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 416 ms.
17-03-17 23:08:57.898 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-17 23:08:58.088 -07 000000551 INF: FPGA: Recv YMVTILE
17-03-17 23:08:58.088 -07 000000486 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 23:08:58.128 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:08:58.138 -07 000000382 INF: FPGA: Recv YRDPOS 136271
17-03-17 23:08:58.138 -07 000000486 INF: FPGA: 'YRDPOS' command took 1 ms to send, 2 ms to get response, and 4 ms overall
17-03-17 23:08:58.138 -07 000000486 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:08:58.138 -07 000000486 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 23:08:58.138 -07 000000486 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.839 mm, average velocity = 2.109 mm/sec
17-03-17 23:08:59.088 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:08:59.088 -07 000000462 INF: FPGA: Recv YRDPOS 136271
17-03-17 23:08:59.098 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:08:59.098 -07 000000486 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:08:59.118 -07 000000486 INF: Y Motor: After move to 66.552605, error = -0.014030, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:08:59.118 -07 000000486 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:08:59.118 -07 000000486 INF: Y Motor: Moved to 66.5386 after 1443 ms (table move)
17-03-17 23:08:59.128 -07 000000429 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175692 mm (DAC = 38380)
17-03-17 23:08:59.128 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:59.128 -07 000000551 INF: FPGA: Recv ZSGSRD 36641
17-03-17 23:08:59.138 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:08:59.138 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:59.138 -07 000000501 INF: FPGA: Recv ZSGSRD 36641
17-03-17 23:08:59.148 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:59.148 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:59.148 -07 000000618 INF: FPGA: Recv ZSGSRD 36645
17-03-17 23:08:59.158 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:59.158 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:59.158 -07 000000501 INF: FPGA: Recv ZSGSRD 36637
17-03-17 23:08:59.168 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:59.168 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:59.168 -07 000000486 INF: FPGA: Recv ZSGSRD 36637
17-03-17 23:08:59.178 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:59.178 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:59.178 -07 000000551 INF: FPGA: Recv ZSGSRD 36634
17-03-17 23:08:59.188 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:59.188 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:59.188 -07 000000409 INF: FPGA: Recv ZSGSRD 36630
17-03-17 23:08:59.198 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:59.198 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:59.198 -07 000000618 INF: FPGA: Recv ZSGSRD 36640
17-03-17 23:08:59.208 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:59.208 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:59.208 -07 000000547 INF: FPGA: Recv ZSGSRD 36637
17-03-17 23:08:59.218 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:59.218 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:08:59.218 -07 000000593 INF: FPGA: Recv ZSGSRD 36643
17-03-17 23:08:59.228 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:59.228 -07 000000429 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:08:59.228 -07 000000462 INF: FPGA: Recv ZPIEZORD 32907
17-03-17 23:08:59.238 -07 000000429 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:59.238 -07 000000429 INF: Z Motor: Piezo is near 50.3 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.856 V. Piezo Error = -8.3 V.
17-03-17 23:08:59.238 -07 000000429 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.7 um, Read 10 ADC samples: Avg = 36638 (-174.8 uncal um), Error = 0.9 uncal um, Median = 36638 (-174.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36630 (-174.8 uncal um), Max = 36645 (-174.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 23:08:59.238 -07 000000429 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36638, posNoise = 7, negNoise = 8
17-03-17 23:08:59.238 -07 000000429 INF: Z Motor: After move to -0.175692, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:08:59.238 -07 000000429 INF: Z Motor: Settle wait time = 1448 ms, measure time = 108 ms (allowed 150 ms), total time = 1556 ms
17-03-17 23:08:59.238 -07 000000429 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 23:08:59.288 -07 000000429 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1610 ms
17-03-17 23:08:59.288 -07 000000429 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:08:59.288 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:08:59.288 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:08:59.288 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:08:59.288 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:08:59.288 -07 000000409 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:08:59.288 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:08:59.288 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:08:59.288 -07 000000409 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:08:59.298 -07 000000409 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:08:59.298 -07 000000409 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:08:59.298 -07 000000409 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 23:08:59.298 -07 000000409 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 23:08:59.308 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 72, FrontChillerTemperature: 3.99219,
17-03-17 23:08:59.318 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:08:59.368 -07 000000541 INF: FPGA: Recv @CAMSNAP turning led on 41
17-03-17 23:08:59.558 -07 000000593 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:08:59.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:08:59.558 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:08:59.558 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) start.
17-03-17 23:08:59.598 -07 000000627 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:08:59.598 -07 000000415 INF: FPGA: Recv CAMSNAP
17-03-17 23:08:59.598 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 274 ms to get response, and 291 ms overall
17-03-17 23:08:59.678 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 23:08:59.678 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:08:59.678 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 23:08:59.678 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 23:08:59.698 -07 000000547 INF: Autofocus start
17-03-17 23:08:59.698 -07 000000547 INF: MeasureProfile start
17-03-17 23:08:59.708 -07 000000547 INF: MeasureProfile done
17-03-17 23:08:59.708 -07 000000547 INF: X=48  Z correction [um]=0.1739867
17-03-17 23:08:59.708 -07 000000547 INF: Autofocus finished
17-03-17 23:08:59.718 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:08:59.718 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:08:59.728 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 23:08:59.728 -07 000000551 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:08:59.928 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:08:59.928 -07 000000551 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:08:59.928 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53857421875, Z-position -0.175693636460973. ----------
17-03-17 23:08:59.928 -07 000000610 INF: Cycle	72	Tile	9	Exposure Settings		A	468	G	225	T	225	C	468
17-03-17 23:08:59.938 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36931, sync = True, waitForSettling = True)
17-03-17 23:08:59.938 -07 000000610 INF: Z Motor: Moving to -0.169059 mm, started at -0.175694 mm, distance = 6.63 um
17-03-17 23:08:59.938 -07 000000610 INF: FPGA: Xmit ZDACW 36931\n [Z Motor]
17-03-17 23:08:59.938 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 23:08:59.948 -07 000000610 INF: FPGA: 'ZDACW 36931' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:59.948 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:08:59.948 -07 000000429 INF: FPGA: Recv ZDACR 36931
17-03-17 23:08:59.958 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:08:59.958 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:09:00.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:00.108 -07 000000409 INF: FPGA: Recv ZSGSRD 35606
17-03-17 23:09:00.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:09:00.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:00.118 -07 000000475 INF: FPGA: Recv ZSGSRD 35606
17-03-17 23:09:00.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:00.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:00.128 -07 000000593 INF: FPGA: Recv ZSGSRD 35608
17-03-17 23:09:00.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:00.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:00.138 -07 000000623 INF: FPGA: Recv ZSGSRD 35601
17-03-17 23:09:00.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:00.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:00.148 -07 000000593 INF: FPGA: Recv ZSGSRD 35609
17-03-17 23:09:00.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:00.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:00.158 -07 000000502 INF: FPGA: Recv ZSGSRD 35605
17-03-17 23:09:00.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:00.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:00.168 -07 000000593 INF: FPGA: Recv ZSGSRD 35607
17-03-17 23:09:00.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:00.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:00.178 -07 000000409 INF: FPGA: Recv ZSGSRD 35609
17-03-17 23:09:00.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:00.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:00.188 -07 000000382 INF: FPGA: Recv ZSGSRD 35605
17-03-17 23:09:00.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:00.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:00.198 -07 000000409 INF: FPGA: Recv ZSGSRD 35608
17-03-17 23:09:00.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:00.208 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:09:00.208 -07 000000382 INF: FPGA: Recv ZPIEZORD 31512
17-03-17 23:09:00.218 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:00.218 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.635 V. Piezo Error = -9.0 V.
17-03-17 23:09:00.218 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.1 um, Read 10 ADC samples: Avg = 35606 (-168.2 uncal um), Error = 0.9 uncal um, Median = 35606 (-168.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35601 (-168.2 uncal um), Max = 35609 (-168.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:09:00.218 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35606, posNoise = 3, negNoise = 5
17-03-17 23:09:00.218 -07 000000610 INF: Z Motor: After move to -0.169059, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:09:00.218 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 23:09:00.218 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:09:00.218 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:09:00.218 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:09:00.218 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:09:00.218 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:09:00.218 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:09:00.218 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:09:00.218 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:09:00.218 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:09:00.218 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:09:00.218 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 23:09:00.218 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:09:00.218 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 23:09:00.218 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:09:00.218 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:09:00.218 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:09:00.238 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-17 23:09:00.238 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 23:09:00.238 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-17 23:09:00.238 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 23:09:00.238 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 468 468 225 225 37108 150\n [Camera]
17-03-17 23:09:00.438 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:09:00.908 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 660
17-03-17 23:09:00.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 660
17-03-17 23:09:00.908 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:09:00.908 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:09:00.908 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2187315360, 0x0, 391868352) start.
17-03-17 23:09:00.908 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 660
17-03-17 23:09:00.908 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 660
17-03-17 23:09:00.908 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:09:00.908 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:09:00.908 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2222737624, 0x0, 418435064) start.
17-03-17 23:09:01.098 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37108 853
17-03-17 23:09:01.248 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1003
17-03-17 23:09:01.288 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2222737624, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 23:09:01.288 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 23:09:01.288 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:09:01.288 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:09:01.298 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2187315360, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 23:09:01.298 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 23:09:01.298 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:09:01.298 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:09:01.298 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 23:09:01.298 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 23:09:01.478 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1228
17-03-17 23:09:01.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1228
17-03-17 23:09:01.478 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:09:01.478 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:09:01.478 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 23:09:01.478 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1228
17-03-17 23:09:01.478 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1228
17-03-17 23:09:01.478 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:09:01.478 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:09:01.478 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 23:09:01.668 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1420
17-03-17 23:09:01.668 -07 000000547 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:09:01.668 -07 000000610 INF: FPGA: 'CAMDBLSNAP 468 468 225 225 37108 150' command took 2 ms to send, 1421 ms to get response, and 1428 ms overall
17-03-17 23:09:01.668 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:09:01.668 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53857421875, Z-Position -0.169063849530676. ------
17-03-17 23:09:01.668 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:09:01.668 -07 000000409 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17582 mm
17-03-17 23:09:01.668 -07 000000409 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:09:01.678 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:09:01.678 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:09:01.678 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 38409, sync = True, waitForSettling = False)
17-03-17 23:09:01.678 -07 000000551 INF: Z Motor: Moving to -0.175825 mm, started at -0.169064 mm, distance = -6.76 um
17-03-17 23:09:01.678 -07 000000478 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:09:01.678 -07 000000486 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 23:09:01.678 -07 000000486 INF: Y Motor: Moving to 67.3826 mm, started at 66.5386 mm, delta = 0.8440 mm
17-03-17 23:09:01.688 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:09:01.688 -07 000000547 INF: FPGA: Recv YRDPOS 136271
17-03-17 23:09:01.698 -07 000000551 INF: FPGA: Xmit ZDACW 38409\n [Z Motor]
17-03-17 23:09:01.698 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 23:09:01.698 -07 000000486 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:09:01.698 -07 000000486 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:09:01.698 -07 000000486 INF: Y Motor: Moving 1350 steps-29
17-03-17 23:09:01.818 -07 000000486 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:09:01.818 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 23:09:01.818 -07 000000551 INF: FPGA: 'ZDACW 38409' command took 0 ms to send, 0 ms to get response, and 145 ms overall
17-03-17 23:09:01.828 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:09:01.828 -07 000000627 INF: FPGA: Recv ZDACR 38409
17-03-17 23:09:01.838 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 23:09:01.838 -07 000000551 INF: Z Motor: MoveAbsStepped took 159 ms (did NOT wait for settling yet))
17-03-17 23:09:01.878 -07 000000576 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:09:01.878 -07 000000478 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:09:01.888 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 410 ms.
17-03-17 23:09:01.888 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 23:09:01.888 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:09:01.888 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 407 ms.
17-03-17 23:09:01.888 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 23:09:01.888 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:09:01.888 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:09:01.898 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 23:09:01.898 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 419 ms.
17-03-17 23:09:01.898 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-17 23:09:02.038 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:09:02.038 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 71. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1150, R2=1196, Total=2346. Warn if over 250 bubbles per interval.
17-03-17 23:09:02.198 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-17 23:09:02.198 -07 000000486 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 373 ms to get response, and 502 ms overall
17-03-17 23:09:02.238 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:09:02.238 -07 000000623 INF: FPGA: Recv YRDPOS 137977
17-03-17 23:09:02.248 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:09:02.248 -07 000000486 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:09:02.248 -07 000000486 INF: Y Motor: Position error before settling (table move) = -23 encoder counts (-0.011 mm)
17-03-17 23:09:02.248 -07 000000486 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 503 ms, distance = 0.844 mm, average velocity = 1.678 mm/sec
17-03-17 23:09:03.198 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:09:03.198 -07 000000627 INF: FPGA: Recv YRDPOS 137977
17-03-17 23:09:03.208 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:09:03.208 -07 000000486 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:09:03.228 -07 000000486 INF: Y Motor: After move to 67.382607, error = -0.011024, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:09:03.228 -07 000000486 INF: Y Motor: Position error after settling (table move) = -23 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:09:03.228 -07 000000486 INF: Y Motor: Moved to 67.3716 after 1554 ms (table move)
17-03-17 23:09:03.228 -07 000000409 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175825 mm (DAC = 38409)
17-03-17 23:09:03.228 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:03.238 -07 000000618 INF: FPGA: Recv ZSGSRD 36669
17-03-17 23:09:03.238 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 23:09:03.238 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:03.238 -07 000000627 INF: FPGA: Recv ZSGSRD 36659
17-03-17 23:09:03.248 -07 000000409 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:09:03.248 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:03.248 -07 000000478 INF: FPGA: Recv ZSGSRD 36667
17-03-17 23:09:03.258 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:03.258 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:03.258 -07 000000502 INF: FPGA: Recv ZSGSRD 36658
17-03-17 23:09:03.268 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:03.268 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:03.268 -07 000000576 INF: FPGA: Recv ZSGSRD 36657
17-03-17 23:09:03.278 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:03.278 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:03.278 -07 000000448 INF: FPGA: Recv ZSGSRD 36658
17-03-17 23:09:03.288 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:03.288 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:03.288 -07 000000561 INF: FPGA: Recv ZSGSRD 36658
17-03-17 23:09:03.298 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:03.298 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:03.298 -07 000000482 INF: FPGA: Recv ZSGSRD 36650
17-03-17 23:09:03.308 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:03.308 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:03.308 -07 000000627 INF: FPGA: Recv ZSGSRD 36662
17-03-17 23:09:03.318 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:03.318 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:03.318 -07 000000429 INF: FPGA: Recv ZSGSRD 36663
17-03-17 23:09:03.328 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:03.328 -07 000000409 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:09:03.328 -07 000000415 INF: FPGA: Recv ZPIEZORD 32881
17-03-17 23:09:03.338 -07 000000409 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:03.338 -07 000000409 INF: Z Motor: Piezo is near 50.2 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.861 V. Piezo Error = -8.4 V.
17-03-17 23:09:03.338 -07 000000409 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.8 um, Read 10 ADC samples: Avg = 36660 (-174.9 uncal um), Error = 0.9 uncal um, Median = 36658 (-174.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 36650 (-174.9 uncal um), Max = 36669 (-175.0 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 23:09:03.338 -07 000000409 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36660, posNoise = 9, negNoise = 10
17-03-17 23:09:03.338 -07 000000409 INF: Z Motor: After move to -0.175825, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:09:03.338 -07 000000409 INF: Z Motor: Settle wait time = 1558 ms, measure time = 102 ms (allowed 150 ms), total time = 1660 ms
17-03-17 23:09:03.338 -07 000000409 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 23:09:03.388 -07 000000409 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1712 ms
17-03-17 23:09:03.388 -07 000000409 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:09:03.388 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:09:03.388 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:09:03.388 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:09:03.388 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:09:03.388 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:09:03.388 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:09:03.398 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:09:03.398 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:09:03.398 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:09:03.398 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:09:03.398 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 23:09:03.398 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 23:09:03.408 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:09:03.448 -07 000000551 INF: FPGA: Recv @CAMSNAP turning led on 42
17-03-17 23:09:03.648 -07 000000593 INF: FPGA: Recv @CAMSNAP img rdy 242
17-03-17 23:09:03.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 242
17-03-17 23:09:03.648 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:09:03.658 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-17 23:09:03.688 -07 000000561 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:09:03.688 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-17 23:09:03.688 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 23:09:03.768 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 23:09:03.768 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:09:03.768 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:09:03.768 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 23:09:03.788 -07 000000486 INF: Autofocus start
17-03-17 23:09:03.788 -07 000000486 INF: MeasureProfile start
17-03-17 23:09:03.788 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:09:03.788 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:09:03.798 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:09:03.798 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:09:03.798 -07 000000486 INF: MeasureProfile done
17-03-17 23:09:03.798 -07 000000486 INF: X=16  Z correction [um]=0.01042744
17-03-17 23:09:03.798 -07 000000486 INF: Autofocus finished
17-03-17 23:09:03.998 -07 000000541 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:09:03.998 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:09:03.998 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37158203125, Z-position -0.175834969128092. ----------
17-03-17 23:09:03.998 -07 000000610 INF: Cycle	72	Tile	10	Exposure Settings		A	468	G	225	T	225	C	468
17-03-17 23:09:04.008 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36924, sync = True, waitForSettling = True)
17-03-17 23:09:04.008 -07 000000610 INF: Z Motor: Moving to -0.169027 mm, started at -0.175835 mm, distance = 6.81 um
17-03-17 23:09:04.008 -07 000000610 INF: FPGA: Xmit ZDACW 36924\n [Z Motor]
17-03-17 23:09:04.008 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 23:09:04.018 -07 000000610 INF: FPGA: 'ZDACW 36924' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:09:04.018 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:09:04.018 -07 000000618 INF: FPGA: Recv ZDACR 36924
17-03-17 23:09:04.028 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:04.028 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:09:04.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:04.178 -07 000000623 INF: FPGA: Recv ZSGSRD 35605
17-03-17 23:09:04.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:09:04.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:04.188 -07 000000561 INF: FPGA: Recv ZSGSRD 35603
17-03-17 23:09:04.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:04.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:04.198 -07 000000593 INF: FPGA: Recv ZSGSRD 35606
17-03-17 23:09:04.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:04.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:04.208 -07 000000429 INF: FPGA: Recv ZSGSRD 35600
17-03-17 23:09:04.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:04.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:04.218 -07 000000618 INF: FPGA: Recv ZSGSRD 35602
17-03-17 23:09:04.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:04.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:04.228 -07 000000547 INF: FPGA: Recv ZSGSRD 35600
17-03-17 23:09:04.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:04.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:04.238 -07 000000502 INF: FPGA: Recv ZSGSRD 35601
17-03-17 23:09:04.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:04.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:04.248 -07 000000593 INF: FPGA: Recv ZSGSRD 35606
17-03-17 23:09:04.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:04.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:04.258 -07 000000486 INF: FPGA: Recv ZSGSRD 35602
17-03-17 23:09:04.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:04.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:04.268 -07 000000618 INF: FPGA: Recv ZSGSRD 35600
17-03-17 23:09:04.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:04.278 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:09:04.278 -07 000000475 INF: FPGA: Recv ZPIEZORD 31501
17-03-17 23:09:04.288 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:04.288 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.634 V. Piezo Error = -9.0 V.
17-03-17 23:09:04.288 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.0 um, Read 10 ADC samples: Avg = 35602 (-168.2 uncal um), Error = 0.9 uncal um, Median = 35602 (-168.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35600 (-168.2 uncal um), Max = 35606 (-168.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 23:09:04.288 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35602, posNoise = 4, negNoise = 2
17-03-17 23:09:04.288 -07 000000610 INF: Z Motor: After move to -0.169027, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:09:04.288 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 23:09:04.288 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:09:04.288 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:09:04.288 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:09:04.288 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:09:04.288 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:09:04.288 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:09:04.288 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:09:04.288 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:09:04.288 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:09:04.288 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:09:04.288 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:09:04.288 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:09:04.298 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 23:09:04.298 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:09:04.298 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:09:04.298 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:09:04.308 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 23:09:04.308 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 23:09:04.308 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 23:09:04.308 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:09:04.308 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 468 468 225 225 37100 150\n [Camera]
17-03-17 23:09:04.508 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:09:04.678 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 72, FrontChillerTemperature: 3.999021,
17-03-17 23:09:04.978 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 660
17-03-17 23:09:04.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 660
17-03-17 23:09:04.978 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:09:04.978 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 660
17-03-17 23:09:04.978 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 660
17-03-17 23:09:04.988 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:09:04.988 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:09:04.988 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 23:09:04.988 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:09:04.988 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 23:09:05.168 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37100 853
17-03-17 23:09:05.318 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1003
17-03-17 23:09:05.368 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 23:09:05.368 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 23:09:05.368 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:09:05.368 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:09:05.368 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 23:09:05.368 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 23:09:05.368 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:09:05.368 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 23:09:05.368 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:09:05.378 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 23:09:05.548 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1228
17-03-17 23:09:05.548 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1228
17-03-17 23:09:05.548 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:09:05.548 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1228
17-03-17 23:09:05.548 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1228
17-03-17 23:09:05.548 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:09:05.668 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:09:05.668 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 23:09:05.668 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:09:05.668 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 23:09:05.738 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP 1420
17-03-17 23:09:05.738 -07 000000475 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:09:05.738 -07 000000610 INF: FPGA: 'CAMDBLSNAP 468 468 225 225 37100 150' command took 2 ms to send, 1423 ms to get response, and 1428 ms overall
17-03-17 23:09:05.738 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:09:05.738 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37158203125, Z-Position -0.169038152682109. ------
17-03-17 23:09:05.738 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:09:05.738 -07 000000415 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17543 mm
17-03-17 23:09:05.738 -07 000000415 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:09:05.748 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 23:09:05.748 -07 000000382 INF: Y Motor: Moving to 68.2126 mm, started at 67.3716 mm, delta = 0.8410 mm
17-03-17 23:09:05.748 -07 000000547 INF: Z Motor: Entering MoveAbsStepped (DAC = 38322, sync = True, waitForSettling = False)
17-03-17 23:09:05.748 -07 000000547 INF: Z Motor: Moving to -0.175427 mm, started at -0.169038 mm, distance = -6.39 um
17-03-17 23:09:05.748 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:09:05.748 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 23:09:05.748 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:09:05.748 -07 000000462 INF: FPGA: Recv YRDPOS 137977
17-03-17 23:09:05.758 -07 000000382 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:05.758 -07 000000382 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:09:05.758 -07 000000382 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:09:05.758 -07 000000382 INF: Y Motor: Moving 1346 steps-23
17-03-17 23:09:05.758 -07 000000547 INF: FPGA: Xmit ZDACW 38322\n [Z Motor]
17-03-17 23:09:05.758 -07 000000409 INF: FPGA: Recv ZDACW
17-03-17 23:09:05.768 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:09:05.768 -07 000000547 INF: FPGA: 'ZDACW 38322' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 23:09:05.778 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:09:05.788 -07 000000547 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:09:05.788 -07 000000627 INF: FPGA: Recv ZDACR 38322
17-03-17 23:09:05.798 -07 000000547 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:09:05.798 -07 000000547 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 23:09:05.968 -07 000000482 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:09:05.968 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 220 ms overall
17-03-17 23:09:06.068 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 23:09:06.068 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 23:09:06.068 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:09:06.068 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 23:09:06.068 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 23:09:06.068 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:09:06.068 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:09:06.068 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:09:06.068 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 525 ms.
17-03-17 23:09:06.078 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 529 ms.
17-03-17 23:09:06.148 -07 000000448 INF: FPGA: Recv YMVTILE
17-03-17 23:09:06.148 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 23:09:06.188 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:09:06.198 -07 000000501 INF: FPGA: Recv YRDPOS 139683
17-03-17 23:09:06.198 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 23:09:06.198 -07 000000382 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:09:06.198 -07 000000382 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 23:09:06.198 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.841 mm, average velocity = 2.118 mm/sec
17-03-17 23:09:07.038 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:09:07.038 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 71. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1150, R2=1196, Total=2346. Warn if over 250 bubbles per interval.
17-03-17 23:09:07.148 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:09:07.148 -07 000000576 INF: FPGA: Recv YRDPOS 139683
17-03-17 23:09:07.158 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:09:07.158 -07 000000382 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:09:07.178 -07 000000382 INF: Y Motor: After move to 68.212608, error = -0.008018, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:09:07.178 -07 000000382 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:09:07.178 -07 000000382 INF: Y Motor: Moved to 68.2046 after 1434 ms (table move)
17-03-17 23:09:07.178 -07 000000415 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175427 mm (DAC = 38322)
17-03-17 23:09:07.178 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:07.188 -07 000000618 INF: FPGA: Recv ZSGSRD 36599
17-03-17 23:09:07.188 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 4 ms to get response, and 5 ms overall
17-03-17 23:09:07.188 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:07.188 -07 000000593 INF: FPGA: Recv ZSGSRD 36599
17-03-17 23:09:07.198 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:09:07.198 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:07.198 -07 000000576 INF: FPGA: Recv ZSGSRD 36598
17-03-17 23:09:07.208 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:07.208 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:07.208 -07 000000502 INF: FPGA: Recv ZSGSRD 36601
17-03-17 23:09:07.218 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:07.218 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:07.218 -07 000000448 INF: FPGA: Recv ZSGSRD 36600
17-03-17 23:09:07.228 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:07.228 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:07.228 -07 000000547 INF: FPGA: Recv ZSGSRD 36605
17-03-17 23:09:07.238 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:07.238 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:07.238 -07 000000486 INF: FPGA: Recv ZSGSRD 36601
17-03-17 23:09:07.248 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:07.248 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:07.248 -07 000000462 INF: FPGA: Recv ZSGSRD 36594
17-03-17 23:09:07.258 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:07.258 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:07.258 -07 000000623 INF: FPGA: Recv ZSGSRD 36597
17-03-17 23:09:07.268 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:07.268 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:07.268 -07 000000475 INF: FPGA: Recv ZSGSRD 36595
17-03-17 23:09:07.278 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:07.278 -07 000000415 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:09:07.278 -07 000000429 INF: FPGA: Recv ZPIEZORD 32860
17-03-17 23:09:07.288 -07 000000415 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:07.288 -07 000000415 INF: Z Motor: Piezo is near 50.2 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.848 V. Piezo Error = -8.3 V.
17-03-17 23:09:07.288 -07 000000415 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.4 um, Read 10 ADC samples: Avg = 36599 (-174.6 uncal um), Error = 0.9 uncal um, Median = 36599 (-174.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36594 (-174.5 uncal um), Max = 36605 (-174.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:09:07.288 -07 000000415 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36599, posNoise = 6, negNoise = 5
17-03-17 23:09:07.288 -07 000000415 INF: Z Motor: After move to -0.175427, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:09:07.288 -07 000000415 INF: Z Motor: Settle wait time = 1437 ms, measure time = 102 ms (allowed 150 ms), total time = 1539 ms
17-03-17 23:09:07.288 -07 000000415 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 23:09:07.338 -07 000000415 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-17 23:09:07.338 -07 000000415 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:09:07.338 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:09:07.338 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:09:07.338 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:09:07.338 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:09:07.338 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:09:07.338 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:09:07.338 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 23:09:07.338 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:09:07.348 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:09:07.348 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:09:07.348 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 23:09:07.348 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 23:09:07.358 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:09:07.398 -07 000000409 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:09:07.598 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:09:07.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:09:07.598 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:09:07.598 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) start.
17-03-17 23:09:07.638 -07 000000475 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:09:07.638 -07 000000593 INF: FPGA: Recv CAMSNAP
17-03-17 23:09:07.638 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 284 ms overall
17-03-17 23:09:07.718 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 23:09:07.718 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:09:07.718 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:09:07.718 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 23:09:07.738 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:09:07.738 -07 000000429 INF: Autofocus start
17-03-17 23:09:07.738 -07 000000429 INF: MeasureProfile start
17-03-17 23:09:07.738 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:09:07.748 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:09:07.748 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:09:07.748 -07 000000429 INF: MeasureProfile done
17-03-17 23:09:07.748 -07 000000429 INF: X=0  Z correction [um]=-0.0713522
17-03-17 23:09:07.748 -07 000000429 INF: Autofocus finished
17-03-17 23:09:07.948 -07 000000409 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:09:07.948 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:09:07.948 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20458984375, Z-position -0.175443092187444. ----------
17-03-17 23:09:07.948 -07 000000610 INF: Cycle	72	Tile	11	Exposure Settings		A	468	G	225	T	225	C	468
17-03-17 23:09:07.958 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36819, sync = True, waitForSettling = True)
17-03-17 23:09:07.958 -07 000000610 INF: Z Motor: Moving to -0.168547 mm, started at -0.175443 mm, distance = 6.90 um
17-03-17 23:09:07.958 -07 000000610 INF: FPGA: Xmit ZDACW 36819\n [Z Motor]
17-03-17 23:09:07.958 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 23:09:07.968 -07 000000610 INF: FPGA: 'ZDACW 36819' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:09:07.968 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:09:07.968 -07 000000551 INF: FPGA: Recv ZDACR 36819
17-03-17 23:09:07.978 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:07.978 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:09:08.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:08.128 -07 000000541 INF: FPGA: Recv ZSGSRD 35525
17-03-17 23:09:08.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:09:08.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:08.138 -07 000000593 INF: FPGA: Recv ZSGSRD 35535
17-03-17 23:09:08.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:08.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:08.148 -07 000000478 INF: FPGA: Recv ZSGSRD 35524
17-03-17 23:09:08.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:08.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:08.158 -07 000000462 INF: FPGA: Recv ZSGSRD 35527
17-03-17 23:09:08.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:08.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:08.168 -07 000000561 INF: FPGA: Recv ZSGSRD 35526
17-03-17 23:09:08.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:08.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:08.178 -07 000000541 INF: FPGA: Recv ZSGSRD 35530
17-03-17 23:09:08.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:08.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:08.188 -07 000000475 INF: FPGA: Recv ZSGSRD 35527
17-03-17 23:09:08.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:08.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:08.198 -07 000000448 INF: FPGA: Recv ZSGSRD 35523
17-03-17 23:09:08.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:08.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:08.208 -07 000000482 INF: FPGA: Recv ZSGSRD 35527
17-03-17 23:09:08.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:08.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:08.218 -07 000000429 INF: FPGA: Recv ZSGSRD 35531
17-03-17 23:09:08.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:08.228 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:09:08.228 -07 000000541 INF: FPGA: Recv ZPIEZORD 31404
17-03-17 23:09:08.238 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:08.238 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.618 V. Piezo Error = -9.1 V.
17-03-17 23:09:08.238 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.5 um, Read 10 ADC samples: Avg = 35528 (-167.7 uncal um), Error = 0.9 uncal um, Median = 35527 (-167.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35523 (-167.7 uncal um), Max = 35535 (-167.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:09:08.238 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35528, posNoise = 7, negNoise = 5
17-03-17 23:09:08.238 -07 000000610 INF: Z Motor: After move to -0.168547, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:09:08.238 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 23:09:08.238 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:09:08.238 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:09:08.238 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:09:08.238 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:09:08.238 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:09:08.238 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:09:08.238 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:09:08.238 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:09:08.238 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:09:08.238 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:09:08.238 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:09:08.238 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:09:08.248 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 23:09:08.248 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:09:08.248 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 23:09:08.248 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:09:08.248 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 23:09:08.248 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 23:09:08.248 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 23:09:08.248 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 23:09:08.258 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 468 468 225 225 36996 150\n [Camera]
17-03-17 23:09:08.458 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:09:08.918 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 660
17-03-17 23:09:08.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 660
17-03-17 23:09:08.928 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:09:08.928 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 660
17-03-17 23:09:08.928 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 660
17-03-17 23:09:08.928 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:09:08.928 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:09:08.928 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 23:09:08.928 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:09:08.928 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 23:09:09.118 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36996 853
17-03-17 23:09:09.268 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1003
17-03-17 23:09:09.308 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 23:09:09.308 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 23:09:09.308 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:09:09.318 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 23:09:09.318 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 23:09:09.318 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:09:09.318 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:09:09.318 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 23:09:09.318 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:09:09.328 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 23:09:09.488 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1228
17-03-17 23:09:09.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1228
17-03-17 23:09:09.488 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:09:09.488 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:09:09.488 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-17 23:09:09.498 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1228
17-03-17 23:09:09.498 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1228
17-03-17 23:09:09.498 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:09:09.498 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:09:09.498 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-17 23:09:09.678 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP 1421
17-03-17 23:09:09.678 -07 000000409 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:09:09.678 -07 000000610 INF: FPGA: 'CAMDBLSNAP 468 468 225 225 36996 150' command took 2 ms to send, 1419 ms to get response, and 1427 ms overall
17-03-17 23:09:09.688 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:09:09.688 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20458984375, Z-Position -0.168562760983618. ------
17-03-17 23:09:09.688 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:09:09.688 -07 000000415 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17504 mm
17-03-17 23:09:09.688 -07 000000415 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:09:09.688 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 23:09:09.688 -07 000000409 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:09:09.688 -07 000000618 INF: Y Motor: Moving to 69.0426 mm, started at 68.2046 mm, delta = 0.8380 mm
17-03-17 23:09:09.688 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 38237, sync = True, waitForSettling = False)
17-03-17 23:09:09.698 -07 000000623 INF: Z Motor: Moving to -0.175038 mm, started at -0.168563 mm, distance = -6.48 um
17-03-17 23:09:09.698 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:09:09.698 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:09:09.698 -07 000000561 INF: FPGA: Recv YRDPOS 139683
17-03-17 23:09:09.708 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:09:09.708 -07 000000623 INF: FPGA: Xmit ZDACW 38237\n [Z Motor]
17-03-17 23:09:09.708 -07 000000618 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:09:09.708 -07 000000618 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:09:09.708 -07 000000618 INF: Y Motor: Moving 1341 steps-16
17-03-17 23:09:09.708 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 23:09:09.718 -07 000000475 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:09:09.718 -07 000000623 INF: FPGA: 'ZDACW 38237' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 23:09:09.728 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:09:09.748 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:09:09.748 -07 000000462 INF: FPGA: Recv ZDACR 38237
17-03-17 23:09:09.758 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-17 23:09:09.758 -07 000000623 INF: Z Motor: MoveAbsStepped took 60 ms (did NOT wait for settling yet))
17-03-17 23:09:09.898 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 23:09:09.898 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 23:09:09.898 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:09:09.898 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 23:09:09.898 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 23:09:09.898 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:09:09.898 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:09:09.898 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 23:09:09.908 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 23:09:09.908 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 23:09:09.918 -07 000000409 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:09:09.918 -07 000000475 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 220 ms overall
17-03-17 23:09:10.058 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 72, FrontChillerTemperature: 3.978563,
17-03-17 23:09:10.098 -07 000000593 INF: FPGA: Recv YMVTILE
17-03-17 23:09:10.098 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 23:09:10.138 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:09:10.148 -07 000000478 INF: FPGA: Recv YRDPOS 141366
17-03-17 23:09:10.148 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 23:09:10.148 -07 000000618 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:09:10.148 -07 000000618 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-17 23:09:10.148 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.111 mm/sec
17-03-17 23:09:11.098 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:09:11.098 -07 000000462 INF: FPGA: Recv YRDPOS 141366
17-03-17 23:09:11.108 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:09:11.108 -07 000000618 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:09:11.128 -07 000000618 INF: Y Motor: After move to 69.042610, error = -0.016243, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:09:11.128 -07 000000618 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:09:11.128 -07 000000618 INF: Y Motor: Moved to 69.0264 after 1436 ms (table move)
17-03-17 23:09:11.128 -07 000000415 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175038 mm (DAC = 38237)
17-03-17 23:09:11.128 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:11.138 -07 000000501 INF: FPGA: Recv ZSGSRD 36535
17-03-17 23:09:11.148 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:09:11.148 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:11.148 -07 000000409 INF: FPGA: Recv ZSGSRD 36539
17-03-17 23:09:11.158 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:11.158 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:11.158 -07 000000502 INF: FPGA: Recv ZSGSRD 36541
17-03-17 23:09:11.168 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:11.168 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:11.168 -07 000000482 INF: FPGA: Recv ZSGSRD 36541
17-03-17 23:09:11.178 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:11.178 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:11.178 -07 000000448 INF: FPGA: Recv ZSGSRD 36540
17-03-17 23:09:11.188 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:11.188 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:11.188 -07 000000382 INF: FPGA: Recv ZSGSRD 36542
17-03-17 23:09:11.198 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:11.198 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:11.198 -07 000000486 INF: FPGA: Recv ZSGSRD 36534
17-03-17 23:09:11.208 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:11.208 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:11.208 -07 000000561 INF: FPGA: Recv ZSGSRD 36534
17-03-17 23:09:11.218 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:11.218 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:11.218 -07 000000627 INF: FPGA: Recv ZSGSRD 36536
17-03-17 23:09:11.228 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:11.228 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:11.228 -07 000000541 INF: FPGA: Recv ZSGSRD 36542
17-03-17 23:09:11.238 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:11.238 -07 000000415 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:09:11.238 -07 000000501 INF: FPGA: Recv ZPIEZORD 32782
17-03-17 23:09:11.248 -07 000000415 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:11.248 -07 000000415 INF: Z Motor: Piezo is near 50.0 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.835 V. Piezo Error = -8.3 V.
17-03-17 23:09:11.248 -07 000000415 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.0 um, Read 10 ADC samples: Avg = 36538 (-174.2 uncal um), Error = 0.9 uncal um, Median = 36540 (-174.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36534 (-174.1 uncal um), Max = 36542 (-174.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:09:11.248 -07 000000415 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36538, posNoise = 4, negNoise = 4
17-03-17 23:09:11.248 -07 000000415 INF: Z Motor: After move to -0.175038, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:09:11.248 -07 000000415 INF: Z Motor: Settle wait time = 1437 ms, measure time = 111 ms (allowed 150 ms), total time = 1548 ms
17-03-17 23:09:11.248 -07 000000415 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 23:09:11.288 -07 000000415 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1594 ms
17-03-17 23:09:11.288 -07 000000415 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:09:11.288 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:09:11.288 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:09:11.288 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:09:11.288 -07 000000409 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:09:11.288 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:09:11.288 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:09:11.288 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:09:11.288 -07 000000409 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:09:11.298 -07 000000409 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:09:11.298 -07 000000409 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:09:11.308 -07 000000409 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 23:09:11.308 -07 000000409 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 23:09:11.308 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:09:11.358 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 41
17-03-17 23:09:11.558 -07 000000623 INF: FPGA: Recv @CAMSNAP img rdy 241
17-03-17 23:09:11.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 241
17-03-17 23:09:11.558 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:09:11.558 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2270629648, 0x0, 559484976) start.
17-03-17 23:09:11.588 -07 000000593 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:09:11.598 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 23:09:11.598 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 23:09:11.678 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2270629648, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 23:09:11.678 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:09:11.678 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:09:11.678 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 23:09:11.698 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:09:11.698 -07 000000576 INF: Autofocus start
17-03-17 23:09:11.698 -07 000000576 INF: MeasureProfile start
17-03-17 23:09:11.698 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:09:11.708 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:09:11.708 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:09:11.718 -07 000000576 INF: MeasureProfile done
17-03-17 23:09:11.718 -07 000000576 INF: X=32  Z correction [um]=0.09220707
17-03-17 23:09:11.718 -07 000000576 INF: Autofocus finished
17-03-17 23:09:11.908 -07 000000475 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:09:11.908 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:09:11.908 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.0263671875, Z-position -0.175051215246797. ----------
17-03-17 23:09:11.908 -07 000000610 INF: Cycle	72	Tile	12	Exposure Settings		A	468	G	225	T	225	C	468
17-03-17 23:09:11.918 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36770, sync = True, waitForSettling = True)
17-03-17 23:09:11.918 -07 000000610 INF: Z Motor: Moving to -0.168322 mm, started at -0.175051 mm, distance = 6.73 um
17-03-17 23:09:11.918 -07 000000610 INF: FPGA: Xmit ZDACW 36770\n [Z Motor]
17-03-17 23:09:11.918 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 23:09:11.928 -07 000000610 INF: FPGA: 'ZDACW 36770' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:09:11.928 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:09:11.928 -07 000000415 INF: FPGA: Recv ZDACR 36770
17-03-17 23:09:11.938 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:11.938 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:09:12.038 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:09:12.038 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 71. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1150, R2=1196, Total=2346. Warn if over 250 bubbles per interval.
17-03-17 23:09:12.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:12.088 -07 000000623 INF: FPGA: Recv ZSGSRD 35493
17-03-17 23:09:12.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:09:12.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:12.098 -07 000000502 INF: FPGA: Recv ZSGSRD 35494
17-03-17 23:09:12.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:12.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:12.108 -07 000000551 INF: FPGA: Recv ZSGSRD 35491
17-03-17 23:09:12.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:12.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:12.118 -07 000000429 INF: FPGA: Recv ZSGSRD 35491
17-03-17 23:09:12.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:12.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:12.128 -07 000000576 INF: FPGA: Recv ZSGSRD 35499
17-03-17 23:09:12.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:12.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:12.138 -07 000000593 INF: FPGA: Recv ZSGSRD 35497
17-03-17 23:09:12.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:12.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:12.148 -07 000000475 INF: FPGA: Recv ZSGSRD 35490
17-03-17 23:09:12.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:12.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:12.158 -07 000000429 INF: FPGA: Recv ZSGSRD 35495
17-03-17 23:09:12.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:12.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:12.168 -07 000000576 INF: FPGA: Recv ZSGSRD 35497
17-03-17 23:09:12.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:12.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:12.178 -07 000000409 INF: FPGA: Recv ZSGSRD 35491
17-03-17 23:09:12.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:12.188 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:09:12.188 -07 000000593 INF: FPGA: Recv ZPIEZORD 31369
17-03-17 23:09:12.198 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:12.198 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.611 V. Piezo Error = -9.1 V.
17-03-17 23:09:12.198 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.3 um, Read 10 ADC samples: Avg = 35494 (-167.5 uncal um), Error = 0.8 uncal um, Median = 35494 (-167.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35490 (-167.4 uncal um), Max = 35499 (-167.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:09:12.198 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35494, posNoise = 5, negNoise = 4
17-03-17 23:09:12.198 -07 000000610 INF: Z Motor: After move to -0.168322, error = -0.000022, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:09:12.198 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 23:09:12.198 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:09:12.198 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:09:12.198 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:09:12.198 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:09:12.198 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:09:12.198 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:09:12.198 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:09:12.198 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:09:12.198 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:09:12.198 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:09:12.198 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:09:12.198 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:09:12.208 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 23:09:12.208 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:09:12.208 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 23:09:12.208 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:09:12.208 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 23:09:12.208 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 23:09:12.218 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 23:09:12.218 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:09:12.218 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 468 468 225 225 36946 150\n [Camera]
17-03-17 23:09:12.418 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:09:12.888 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 660
17-03-17 23:09:12.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 660
17-03-17 23:09:12.888 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:09:12.888 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:09:12.888 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 23:09:12.888 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 660
17-03-17 23:09:12.888 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 660
17-03-17 23:09:12.888 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:09:12.888 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:09:12.888 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 23:09:13.078 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36946 853
17-03-17 23:09:13.228 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1003
17-03-17 23:09:13.288 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 23:09:13.288 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 23:09:13.288 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 23:09:13.288 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:09:13.298 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 23:09:13.298 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:09:13.298 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 23:09:13.298 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 23:09:13.298 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:09:13.308 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 23:09:13.458 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1231
17-03-17 23:09:13.458 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1231
17-03-17 23:09:13.458 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:09:13.578 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1231
17-03-17 23:09:13.578 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1231
17-03-17 23:09:13.578 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:09:13.578 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:09:13.578 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 23:09:13.588 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:09:13.588 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 23:09:13.648 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP 1421
17-03-17 23:09:13.648 -07 000000541 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:09:13.648 -07 000000610 INF: FPGA: 'CAMDBLSNAP 468 468 225 225 36946 150' command took 2 ms to send, 1422 ms to get response, and 1427 ms overall
17-03-17 23:09:13.648 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:09:13.648 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.0263671875, Z-Position -0.168344337770798. ------
17-03-17 23:09:13.648 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:09:13.648 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17470 mm
17-03-17 23:09:13.648 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:09:13.658 -07 000000409 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 23:09:13.658 -07 000000409 INF: Y Motor: Moving to 69.8726 mm, started at 69.0264 mm, delta = 0.8462 mm
17-03-17 23:09:13.658 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 38163, sync = True, waitForSettling = False)
17-03-17 23:09:13.658 -07 000000551 INF: Z Motor: Moving to -0.174699 mm, started at -0.168344 mm, distance = -6.35 um
17-03-17 23:09:13.658 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:09:13.658 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 4 ms overall
17-03-17 23:09:13.658 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:09:13.658 -07 000000576 INF: FPGA: Recv YRDPOS 141367
17-03-17 23:09:13.668 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:09:13.668 -07 000000409 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:09:13.668 -07 000000551 INF: FPGA: Xmit ZDACW 38163\n [Z Motor]
17-03-17 23:09:13.668 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 23:09:13.668 -07 000000409 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:09:13.668 -07 000000409 INF: Y Motor: Moving 1353 steps-33
17-03-17 23:09:13.678 -07 000000623 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:09:13.678 -07 000000551 INF: FPGA: 'ZDACW 38163' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 23:09:13.688 -07 000000409 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:09:13.698 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:09:13.698 -07 000000541 INF: FPGA: Recv ZDACR 38163
17-03-17 23:09:13.708 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:09:13.708 -07 000000551 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-17 23:09:13.878 -07 000000547 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:09:13.878 -07 000000623 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 219 ms overall
17-03-17 23:09:13.978 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 23:09:13.978 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 23:09:13.978 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:09:13.978 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 23:09:13.988 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 23:09:13.988 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:09:13.988 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:09:13.988 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:09:13.988 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 529 ms.
17-03-17 23:09:13.988 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 23:09:14.068 -07 000000486 INF: FPGA: Recv YMVTILE
17-03-17 23:09:14.068 -07 000000409 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 393 ms overall
17-03-17 23:09:14.108 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:09:14.108 -07 000000382 INF: FPGA: Recv YRDPOS 143078
17-03-17 23:09:14.118 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:09:14.118 -07 000000409 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:09:14.118 -07 000000409 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-17 23:09:14.118 -07 000000409 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.846 mm, average velocity = 2.153 mm/sec
17-03-17 23:09:15.068 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:09:15.068 -07 000000593 INF: FPGA: Recv YRDPOS 143079
17-03-17 23:09:15.078 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:09:15.078 -07 000000409 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:09:15.098 -07 000000409 INF: Y Motor: After move to 69.872612, error = -0.009819, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:09:15.098 -07 000000409 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 23:09:15.098 -07 000000409 INF: Y Motor: Moved to 69.8628 after 1444 ms (table move)
17-03-17 23:09:15.098 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174699 mm (DAC = 38163)
17-03-17 23:09:15.098 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:15.108 -07 000000382 INF: FPGA: Recv ZSGSRD 36487
17-03-17 23:09:15.108 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 23:09:15.118 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:15.118 -07 000000475 INF: FPGA: Recv ZSGSRD 36484
17-03-17 23:09:15.128 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 23:09:15.128 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:15.128 -07 000000627 INF: FPGA: Recv ZSGSRD 36482
17-03-17 23:09:15.138 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:15.138 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:15.138 -07 000000561 INF: FPGA: Recv ZSGSRD 36478
17-03-17 23:09:15.148 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:15.148 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:15.148 -07 000000409 INF: FPGA: Recv ZSGSRD 36482
17-03-17 23:09:15.158 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:15.158 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:15.158 -07 000000382 INF: FPGA: Recv ZSGSRD 36490
17-03-17 23:09:15.168 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:15.168 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:15.168 -07 000000551 INF: FPGA: Recv ZSGSRD 36489
17-03-17 23:09:15.178 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:15.178 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:15.178 -07 000000593 INF: FPGA: Recv ZSGSRD 36491
17-03-17 23:09:15.188 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:15.188 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:15.188 -07 000000475 INF: FPGA: Recv ZSGSRD 36479
17-03-17 23:09:15.198 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:15.198 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:15.198 -07 000000501 INF: FPGA: Recv ZSGSRD 36484
17-03-17 23:09:15.208 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:15.208 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:09:15.208 -07 000000576 INF: FPGA: Recv ZPIEZORD 32707
17-03-17 23:09:15.218 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:15.218 -07 000000462 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.823 V. Piezo Error = -8.4 V.
17-03-17 23:09:15.218 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.7 um, Read 10 ADC samples: Avg = 36485 (-173.8 uncal um), Error = 0.9 uncal um, Median = 36484 (-173.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36478 (-173.8 uncal um), Max = 36491 (-173.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 23:09:15.218 -07 000000462 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36485, posNoise = 6, negNoise = 7
17-03-17 23:09:15.218 -07 000000462 INF: Z Motor: After move to -0.174699, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:09:15.218 -07 000000462 INF: Z Motor: Settle wait time = 1446 ms, measure time = 112 ms (allowed 150 ms), total time = 1558 ms
17-03-17 23:09:15.218 -07 000000462 INF: Z Motor: Waiting extra 38 ms after reading position to reach expected total of 150 ms
17-03-17 23:09:15.258 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1601 ms
17-03-17 23:09:15.258 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:09:15.258 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:09:15.258 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:09:15.258 -07 000000409 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:09:15.258 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:09:15.258 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:09:15.258 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:09:15.268 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:09:15.268 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:09:15.268 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:09:15.268 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:09:15.278 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 23:09:15.278 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 23:09:15.278 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:09:15.318 -07 000000551 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:09:15.428 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 72, FrontChillerTemperature: 4.028963,
17-03-17 23:09:15.518 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:09:15.518 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:09:15.518 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:09:15.528 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424593000, 0x0, 559484976) start.
17-03-17 23:09:15.558 -07 000000478 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:09:15.558 -07 000000593 INF: FPGA: Recv CAMSNAP
17-03-17 23:09:15.558 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 285 ms overall
17-03-17 23:09:15.638 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424593000, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 23:09:15.638 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:09:15.638 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:09:15.638 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 23:09:15.658 -07 000000547 INF: Autofocus start
17-03-17 23:09:15.658 -07 000000547 INF: MeasureProfile start
17-03-17 23:09:15.658 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:09:15.658 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:09:15.668 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:09:15.668 -07 000000448 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:09:15.668 -07 000000547 INF: MeasureProfile done
17-03-17 23:09:15.668 -07 000000547 INF: X=16  Z correction [um]=0.01042744
17-03-17 23:09:15.668 -07 000000547 INF: Autofocus finished
17-03-17 23:09:15.868 -07 000000551 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:09:15.868 -07 000000448 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:09:15.868 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86279296875, Z-position -0.174710732003283. ----------
17-03-17 23:09:15.868 -07 000000610 INF: Cycle	72	Tile	13	Exposure Settings		A	468	G	225	T	225	C	468
17-03-17 23:09:15.878 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36678, sync = True, waitForSettling = True)
17-03-17 23:09:15.878 -07 000000610 INF: Z Motor: Moving to -0.167901 mm, started at -0.174711 mm, distance = 6.81 um
17-03-17 23:09:15.878 -07 000000610 INF: FPGA: Xmit ZDACW 36678\n [Z Motor]
17-03-17 23:09:15.878 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 23:09:15.888 -07 000000610 INF: FPGA: 'ZDACW 36678' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:09:15.888 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:09:15.888 -07 000000409 INF: FPGA: Recv ZDACR 36678
17-03-17 23:09:15.898 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:15.898 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:09:16.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:16.048 -07 000000475 INF: FPGA: Recv ZSGSRD 35430
17-03-17 23:09:16.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:09:16.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:16.058 -07 000000482 INF: FPGA: Recv ZSGSRD 35426
17-03-17 23:09:16.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:16.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:16.068 -07 000000593 INF: FPGA: Recv ZSGSRD 35425
17-03-17 23:09:16.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:16.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:16.078 -07 000000502 INF: FPGA: Recv ZSGSRD 35427
17-03-17 23:09:16.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:16.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:16.088 -07 000000429 INF: FPGA: Recv ZSGSRD 35424
17-03-17 23:09:16.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:16.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:16.098 -07 000000623 INF: FPGA: Recv ZSGSRD 35427
17-03-17 23:09:16.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:16.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:16.108 -07 000000382 INF: FPGA: Recv ZSGSRD 35427
17-03-17 23:09:16.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:16.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:16.118 -07 000000415 INF: FPGA: Recv ZSGSRD 35430
17-03-17 23:09:16.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:16.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:16.128 -07 000000501 INF: FPGA: Recv ZSGSRD 35434
17-03-17 23:09:16.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:16.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:16.138 -07 000000462 INF: FPGA: Recv ZSGSRD 35429
17-03-17 23:09:16.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:16.148 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:09:16.148 -07 000000551 INF: FPGA: Recv ZPIEZORD 31276
17-03-17 23:09:16.158 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:16.158 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.597 V. Piezo Error = -9.2 V.
17-03-17 23:09:16.158 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.9 um, Read 10 ADC samples: Avg = 35428 (-167.1 uncal um), Error = 0.9 uncal um, Median = 35427 (-167.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35424 (-167.0 uncal um), Max = 35434 (-167.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:09:16.158 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35428, posNoise = 6, negNoise = 4
17-03-17 23:09:16.158 -07 000000610 INF: Z Motor: After move to -0.167901, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:09:16.158 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 23:09:16.158 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:09:16.158 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:09:16.158 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:09:16.158 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:09:16.158 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:09:16.158 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:09:16.158 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:09:16.158 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:09:16.158 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:09:16.158 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:09:16.158 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:09:16.158 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:09:16.168 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 23:09:16.168 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:09:16.168 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 23:09:16.168 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:09:16.168 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 23:09:16.168 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 23:09:16.178 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 23:09:16.178 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 23:09:16.178 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 468 468 225 225 36855 150\n [Camera]
17-03-17 23:09:16.378 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:09:16.848 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 660
17-03-17 23:09:16.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 660
17-03-17 23:09:16.848 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:09:16.848 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:09:16.848 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 23:09:16.848 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 660
17-03-17 23:09:16.848 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 660
17-03-17 23:09:16.848 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:09:16.848 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:09:16.848 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-17 23:09:17.038 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36855 853
17-03-17 23:09:17.038 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:09:17.038 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 71. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1150, R2=1196, Total=2346. Warn if over 250 bubbles per interval.
17-03-17 23:09:17.188 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1003
17-03-17 23:09:17.238 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 23:09:17.238 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 23:09:17.238 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:09:17.238 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:09:17.238 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 23:09:17.238 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 23:09:17.268 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 23:09:17.268 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:09:17.268 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:09:17.268 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 422 ms.
17-03-17 23:09:17.408 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1228
17-03-17 23:09:17.408 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1228
17-03-17 23:09:17.418 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:09:17.518 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1228
17-03-17 23:09:17.528 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1228
17-03-17 23:09:17.528 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:09:17.528 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:09:17.528 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 23:09:17.528 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:09:17.528 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 23:09:17.608 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP 1420
17-03-17 23:09:17.608 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:09:17.608 -07 000000610 INF: FPGA: 'CAMDBLSNAP 468 468 225 225 36855 150' command took 2 ms to send, 1421 ms to get response, and 1428 ms overall
17-03-17 23:09:17.608 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:09:17.608 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86279296875, Z-Position -0.167920339769442. ------
17-03-17 23:09:17.608 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:09:17.608 -07 000000623 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17431 mm
17-03-17 23:09:17.608 -07 000000623 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:09:17.618 -07 000000482 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 23:09:17.618 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:09:17.618 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:09:17.618 -07 000000482 INF: Y Motor: Moving to 70.7026 mm, started at 69.8628 mm, delta = 0.8398 mm
17-03-17 23:09:17.618 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:09:17.618 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 38078, sync = True, waitForSettling = False)
17-03-17 23:09:17.618 -07 000000551 INF: Z Motor: Moving to -0.174310 mm, started at -0.167920 mm, distance = -6.39 um
17-03-17 23:09:17.618 -07 000000486 INF: FPGA: Recv YRDPOS 143079
17-03-17 23:09:17.628 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:09:17.628 -07 000000551 INF: FPGA: Xmit ZDACW 38078\n [Z Motor]
17-03-17 23:09:17.628 -07 000000482 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:09:17.628 -07 000000482 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:09:17.628 -07 000000482 INF: Y Motor: Moving 1344 steps-21
17-03-17 23:09:17.628 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 23:09:17.638 -07 000000551 INF: FPGA: 'ZDACW 38078' command took 3 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 23:09:17.638 -07 000000541 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:09:17.648 -07 000000482 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:09:17.658 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:09:17.658 -07 000000502 INF: FPGA: Recv ZDACR 38078
17-03-17 23:09:17.668 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:09:17.668 -07 000000551 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 23:09:17.838 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:09:17.838 -07 000000541 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 221 ms overall
17-03-17 23:09:17.928 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 23:09:17.928 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 23:09:17.928 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:09:17.938 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 23:09:17.938 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 23:09:17.938 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:09:17.938 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:09:17.938 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:09:17.938 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 525 ms.
17-03-17 23:09:17.948 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 419 ms.
17-03-17 23:09:18.018 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-17 23:09:18.018 -07 000000482 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 23:09:18.058 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:09:18.068 -07 000000415 INF: FPGA: Recv YRDPOS 144769
17-03-17 23:09:18.068 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 23:09:18.068 -07 000000482 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:09:18.068 -07 000000482 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 23:09:18.068 -07 000000482 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.840 mm, average velocity = 2.126 mm/sec
17-03-17 23:09:19.018 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:09:19.018 -07 000000409 INF: FPGA: Recv YRDPOS 144769
17-03-17 23:09:19.028 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:19.028 -07 000000482 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:09:19.048 -07 000000482 INF: Y Motor: After move to 70.702606, error = -0.014618, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:09:19.048 -07 000000482 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:09:19.048 -07 000000482 INF: Y Motor: Moved to 70.6880 after 1434 ms (table move)
17-03-17 23:09:19.048 -07 000000623 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174310 mm (DAC = 38078)
17-03-17 23:09:19.048 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:19.058 -07 000000561 INF: FPGA: Recv ZSGSRD 36428
17-03-17 23:09:19.058 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 23:09:19.058 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:19.058 -07 000000593 INF: FPGA: Recv ZSGSRD 36425
17-03-17 23:09:19.068 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:09:19.068 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:19.068 -07 000000486 INF: FPGA: Recv ZSGSRD 36428
17-03-17 23:09:19.078 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:19.078 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:19.078 -07 000000551 INF: FPGA: Recv ZSGSRD 36422
17-03-17 23:09:19.088 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:19.088 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:19.088 -07 000000541 INF: FPGA: Recv ZSGSRD 36426
17-03-17 23:09:19.098 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:19.098 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:19.098 -07 000000478 INF: FPGA: Recv ZSGSRD 36423
17-03-17 23:09:19.108 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:19.108 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:19.108 -07 000000502 INF: FPGA: Recv ZSGSRD 36422
17-03-17 23:09:19.118 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:19.118 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:19.118 -07 000000475 INF: FPGA: Recv ZSGSRD 36423
17-03-17 23:09:19.128 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:19.128 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:19.128 -07 000000627 INF: FPGA: Recv ZSGSRD 36421
17-03-17 23:09:19.138 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:19.138 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:19.138 -07 000000462 INF: FPGA: Recv ZSGSRD 36423
17-03-17 23:09:19.148 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:19.148 -07 000000623 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:09:19.148 -07 000000482 INF: FPGA: Recv ZPIEZORD 32617
17-03-17 23:09:19.158 -07 000000623 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:19.158 -07 000000623 INF: Z Motor: Piezo is near 49.7 V (nominally 0 to 100 V), expect near 58.1 V, since DAC is at 5.810 V. Piezo Error = -8.4 V.
17-03-17 23:09:19.158 -07 000000623 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.3 um, Read 10 ADC samples: Avg = 36424 (-173.4 uncal um), Error = 0.9 uncal um, Median = 36423 (-173.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 36421 (-173.4 uncal um), Max = 36428 (-173.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 23:09:19.158 -07 000000623 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36424, posNoise = 4, negNoise = 3
17-03-17 23:09:19.158 -07 000000623 INF: Z Motor: After move to -0.174310, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:09:19.158 -07 000000623 INF: Z Motor: Settle wait time = 1436 ms, measure time = 102 ms (allowed 150 ms), total time = 1538 ms
17-03-17 23:09:19.158 -07 000000623 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 23:09:19.208 -07 000000623 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1592 ms
17-03-17 23:09:19.208 -07 000000623 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:09:19.208 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:09:19.208 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:09:19.208 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:09:19.208 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:09:19.208 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:09:19.208 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:09:19.208 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:09:19.208 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:09:19.218 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:09:19.218 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:09:19.228 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 23:09:19.228 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 23:09:19.228 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:09:19.278 -07 000000409 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:09:19.468 -07 000000415 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:09:19.468 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:09:19.478 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:09:19.478 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424593000, 0x0, 559484976) start.
17-03-17 23:09:19.508 -07 000000382 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:09:19.508 -07 000000475 INF: FPGA: Recv CAMSNAP
17-03-17 23:09:19.518 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 23:09:19.598 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424593000, 0x0, 559484976) end. Duration was 121 ms.
17-03-17 23:09:19.598 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:09:19.598 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:09:19.598 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-17 23:09:19.618 -07 000000547 INF: Autofocus start
17-03-17 23:09:19.618 -07 000000547 INF: MeasureProfile start
17-03-17 23:09:19.618 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:09:19.618 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:09:19.628 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:09:19.628 -07 000000448 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:09:19.628 -07 000000547 INF: MeasureProfile done
17-03-17 23:09:19.628 -07 000000547 INF: X=16  Z correction [um]=0.01042744
17-03-17 23:09:19.628 -07 000000547 INF: Autofocus finished
17-03-17 23:09:19.828 -07 000000409 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:09:19.828 -07 000000448 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:09:19.828 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68798828125, Z-position -0.174318855062636. ----------
17-03-17 23:09:19.848 -07 000000610 INF: Cycle	72	Tile	14	Exposure Settings		A	468	G	225	T	225	C	468
17-03-17 23:09:19.848 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36593, sync = True, waitForSettling = True)
17-03-17 23:09:19.848 -07 000000610 INF: Z Motor: Moving to -0.167512 mm, started at -0.174319 mm, distance = 6.81 um
17-03-17 23:09:19.848 -07 000000610 INF: FPGA: Xmit ZDACW 36593\n [Z Motor]
17-03-17 23:09:19.848 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 23:09:19.858 -07 000000610 INF: FPGA: 'ZDACW 36593' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:09:19.858 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:09:19.858 -07 000000501 INF: FPGA: Recv ZDACR 36593
17-03-17 23:09:19.868 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:19.868 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:09:20.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:20.018 -07 000000576 INF: FPGA: Recv ZSGSRD 35371
17-03-17 23:09:20.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:09:20.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:20.028 -07 000000551 INF: FPGA: Recv ZSGSRD 35367
17-03-17 23:09:20.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:20.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:20.038 -07 000000382 INF: FPGA: Recv ZSGSRD 35362
17-03-17 23:09:20.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:20.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:20.048 -07 000000502 INF: FPGA: Recv ZSGSRD 35368
17-03-17 23:09:20.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:20.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:20.058 -07 000000547 INF: FPGA: Recv ZSGSRD 35363
17-03-17 23:09:20.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:20.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:20.068 -07 000000576 INF: FPGA: Recv ZSGSRD 35367
17-03-17 23:09:20.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:20.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:20.078 -07 000000541 INF: FPGA: Recv ZSGSRD 35366
17-03-17 23:09:20.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:20.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:20.088 -07 000000593 INF: FPGA: Recv ZSGSRD 35363
17-03-17 23:09:20.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:20.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:20.098 -07 000000502 INF: FPGA: Recv ZSGSRD 35369
17-03-17 23:09:20.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:20.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:20.108 -07 000000501 INF: FPGA: Recv ZSGSRD 35365
17-03-17 23:09:20.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:20.118 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:09:20.118 -07 000000482 INF: FPGA: Recv ZPIEZORD 31189
17-03-17 23:09:20.128 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:20.128 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.584 V. Piezo Error = -9.2 V.
17-03-17 23:09:20.128 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.5 um, Read 10 ADC samples: Avg = 35366 (-166.7 uncal um), Error = 0.9 uncal um, Median = 35366 (-166.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35362 (-166.6 uncal um), Max = 35371 (-166.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:09:20.128 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35366, posNoise = 5, negNoise = 4
17-03-17 23:09:20.128 -07 000000610 INF: Z Motor: After move to -0.167512, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:09:20.128 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 23:09:20.128 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:09:20.128 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:09:20.128 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:09:20.128 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:09:20.128 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:09:20.128 -07 000000409 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:09:20.128 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:09:20.128 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:09:20.128 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:09:20.128 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:09:20.128 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:09:20.128 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:09:20.138 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:09:20.138 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:09:20.138 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:09:20.138 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:09:20.148 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 23:09:20.148 -07 000000409 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:09:20.148 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 23:09:20.148 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 23:09:20.148 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 468 468 225 225 36770 150\n [Camera]
17-03-17 23:09:20.348 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:09:20.798 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 72, FrontChillerTemperature: 4.030322,
17-03-17 23:09:20.818 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 660
17-03-17 23:09:20.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 660
17-03-17 23:09:20.818 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:09:20.818 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:09:20.818 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1443674384, 0x0, 391868352) start.
17-03-17 23:09:20.818 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 660
17-03-17 23:09:20.828 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 660
17-03-17 23:09:20.828 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:09:20.828 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:09:20.828 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1479096648, 0x0, 418435064) start.
17-03-17 23:09:21.118 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36770 853
17-03-17 23:09:21.158 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1003
17-03-17 23:09:21.198 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1443674384, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 23:09:21.198 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 23:09:21.198 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:09:21.198 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1479096648, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 23:09:21.198 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 23:09:21.198 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:09:21.208 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 23:09:21.208 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 23:09:21.208 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 23:09:21.208 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 23:09:21.388 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1228
17-03-17 23:09:21.388 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1228
17-03-17 23:09:21.388 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:09:21.388 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1228
17-03-17 23:09:21.388 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1228
17-03-17 23:09:21.388 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:09:21.388 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:09:21.398 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 23:09:21.398 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:09:21.398 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 23:09:21.578 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP 1421
17-03-17 23:09:21.578 -07 000000482 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:09:21.578 -07 000000610 INF: FPGA: 'CAMDBLSNAP 468 468 225 225 36770 150' command took 2 ms to send, 1425 ms to get response, and 1431 ms overall
17-03-17 23:09:21.578 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:09:21.578 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68798828125, Z-Position -0.167522038616653. ------
17-03-17 23:09:21.588 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:09:21.588 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17373 mm
17-03-17 23:09:21.588 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:09:21.588 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 23:09:21.588 -07 000000623 INF: Y Motor: Moving to 71.5326 mm, started at 70.6880 mm, delta = 0.8446 mm
17-03-17 23:09:21.588 -07 000000448 INF: Z Motor: Entering MoveAbsStepped (DAC = 37952, sync = True, waitForSettling = False)
17-03-17 23:09:21.588 -07 000000448 INF: Z Motor: Moving to -0.173733 mm, started at -0.167522 mm, distance = -6.21 um
17-03-17 23:09:21.588 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:09:21.598 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:09:21.598 -07 000000448 INF: FPGA: Xmit ZDACW 37952\n [Z Motor]
17-03-17 23:09:21.598 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 23:09:21.608 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:09:21.608 -07 000000448 INF: FPGA: 'ZDACW 37952' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 23:09:21.608 -07 000000478 INF: FPGA: Recv YRDPOS 144769
17-03-17 23:09:21.618 -07 000000547 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:09:21.618 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 23:09:21.618 -07 000000623 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:09:21.618 -07 000000623 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:09:21.618 -07 000000623 INF: Y Motor: Moving 1351 steps-30
17-03-17 23:09:21.628 -07 000000448 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:09:21.628 -07 000000409 INF: FPGA: Recv ZDACR 37952
17-03-17 23:09:21.638 -07 000000448 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:09:21.638 -07 000000448 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-17 23:09:21.638 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:09:21.788 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 23:09:21.788 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 23:09:21.788 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:09:21.788 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 23:09:21.788 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 23:09:21.788 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:09:21.788 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:09:21.788 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 23:09:21.788 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:09:21.798 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 23:09:21.818 -07 000000551 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:09:21.818 -07 000000547 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 23:09:22.008 -07 000000475 INF: FPGA: Recv YMVTILE
17-03-17 23:09:22.008 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 23:09:22.038 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:09:22.038 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 71. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1150, R2=1196, Total=2346. Warn if over 250 bubbles per interval.
17-03-17 23:09:22.048 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:09:22.058 -07 000000551 INF: FPGA: Recv YRDPOS 146470
17-03-17 23:09:22.058 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 3 ms to get response, and 3 ms overall
17-03-17 23:09:22.058 -07 000000623 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:09:22.058 -07 000000623 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 23:09:22.058 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.845 mm, average velocity = 2.122 mm/sec
17-03-17 23:09:23.008 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:09:23.008 -07 000000382 INF: FPGA: Recv YRDPOS 146470
17-03-17 23:09:23.018 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:09:23.018 -07 000000623 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:09:23.038 -07 000000623 INF: Y Motor: After move to 71.532608, error = -0.014053, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:09:23.038 -07 000000623 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:09:23.038 -07 000000623 INF: Y Motor: Moved to 71.5186 after 1449 ms (table move)
17-03-17 23:09:23.038 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173733 mm (DAC = 37952)
17-03-17 23:09:23.038 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:23.048 -07 000000486 INF: FPGA: Recv ZSGSRD 36338
17-03-17 23:09:23.048 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 23:09:23.048 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:23.048 -07 000000415 INF: FPGA: Recv ZSGSRD 36340
17-03-17 23:09:23.058 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:09:23.058 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:23.058 -07 000000448 INF: FPGA: Recv ZSGSRD 36332
17-03-17 23:09:23.068 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:23.068 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:23.068 -07 000000382 INF: FPGA: Recv ZSGSRD 36332
17-03-17 23:09:23.078 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:23.078 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:23.078 -07 000000547 INF: FPGA: Recv ZSGSRD 36342
17-03-17 23:09:23.088 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:23.088 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:23.088 -07 000000501 INF: FPGA: Recv ZSGSRD 36338
17-03-17 23:09:23.098 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:23.098 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:23.098 -07 000000478 INF: FPGA: Recv ZSGSRD 36335
17-03-17 23:09:23.108 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:23.108 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:23.108 -07 000000409 INF: FPGA: Recv ZSGSRD 36329
17-03-17 23:09:23.118 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:23.118 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:23.118 -07 000000382 INF: FPGA: Recv ZSGSRD 36332
17-03-17 23:09:23.128 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:23.128 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:23.128 -07 000000623 INF: FPGA: Recv ZSGSRD 36335
17-03-17 23:09:23.138 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:23.138 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:09:23.138 -07 000000486 INF: FPGA: Recv ZPIEZORD 32472
17-03-17 23:09:23.148 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:23.148 -07 000000576 INF: Z Motor: Piezo is near 49.4 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.791 V. Piezo Error = -8.5 V.
17-03-17 23:09:23.148 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.7 um, Read 10 ADC samples: Avg = 36335 (-172.9 uncal um), Error = 0.9 uncal um, Median = 36335 (-172.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36329 (-172.8 uncal um), Max = 36342 (-172.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:09:23.148 -07 000000576 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36335, posNoise = 7, negNoise = 6
17-03-17 23:09:23.148 -07 000000576 INF: Z Motor: After move to -0.173733, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:09:23.148 -07 000000576 INF: Z Motor: Settle wait time = 1452 ms, measure time = 101 ms (allowed 150 ms), total time = 1553 ms
17-03-17 23:09:23.148 -07 000000576 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 23:09:23.198 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1608 ms
17-03-17 23:09:23.198 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:09:23.198 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:09:23.198 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:09:23.198 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:09:23.198 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:09:23.198 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:09:23.198 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:09:23.198 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:09:23.208 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:09:23.208 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:09:23.208 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:09:23.218 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 23:09:23.218 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 23:09:23.218 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:09:23.258 -07 000000478 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:09:23.458 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:09:23.458 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:09:23.468 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:09:23.468 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424593000, 0x0, 559484976) start.
17-03-17 23:09:23.498 -07 000000382 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:09:23.498 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-17 23:09:23.508 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 23:09:23.578 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1424593000, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 23:09:23.578 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:09:23.588 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 23:09:23.588 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 23:09:23.608 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:09:23.608 -07 000000482 INF: Autofocus start
17-03-17 23:09:23.608 -07 000000482 INF: MeasureProfile start
17-03-17 23:09:23.608 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:09:23.618 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:09:23.618 -07 000000623 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:09:23.618 -07 000000482 INF: MeasureProfile done
17-03-17 23:09:23.618 -07 000000482 INF: X=112  Z correction [um]=0.5011052
17-03-17 23:09:23.618 -07 000000482 INF: Autofocus finished
17-03-17 23:09:23.818 -07 000000415 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:09:23.818 -07 000000623 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:09:23.818 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.5185546875, Z-position -0.173747100182019. ----------
17-03-17 23:09:23.818 -07 000000610 INF: Cycle	72	Tile	15	Exposure Settings		A	468	G	225	T	225	C	468
17-03-17 23:09:23.828 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36574, sync = True, waitForSettling = True)
17-03-17 23:09:23.828 -07 000000610 INF: Z Motor: Moving to -0.167425 mm, started at -0.173747 mm, distance = 6.32 um
17-03-17 23:09:23.828 -07 000000610 INF: FPGA: Xmit ZDACW 36574\n [Z Motor]
17-03-17 23:09:23.828 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 23:09:23.838 -07 000000610 INF: FPGA: 'ZDACW 36574' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:23.838 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:09:23.838 -07 000000547 INF: FPGA: Recv ZDACR 36574
17-03-17 23:09:23.848 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:23.848 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:09:23.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:23.998 -07 000000502 INF: FPGA: Recv ZSGSRD 35354
17-03-17 23:09:24.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:09:24.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:24.008 -07 000000409 INF: FPGA: Recv ZSGSRD 35353
17-03-17 23:09:24.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:24.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:24.018 -07 000000618 INF: FPGA: Recv ZSGSRD 35352
17-03-17 23:09:24.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:24.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:24.028 -07 000000576 INF: FPGA: Recv ZSGSRD 35350
17-03-17 23:09:24.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:24.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:24.038 -07 000000448 INF: FPGA: Recv ZSGSRD 35357
17-03-17 23:09:24.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:24.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:24.048 -07 000000502 INF: FPGA: Recv ZSGSRD 35350
17-03-17 23:09:24.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:24.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:24.058 -07 000000576 INF: FPGA: Recv ZSGSRD 35350
17-03-17 23:09:24.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:24.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:24.068 -07 000000541 INF: FPGA: Recv ZSGSRD 35350
17-03-17 23:09:24.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:24.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:24.078 -07 000000482 INF: FPGA: Recv ZSGSRD 35348
17-03-17 23:09:24.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:24.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:24.088 -07 000000448 INF: FPGA: Recv ZSGSRD 35356
17-03-17 23:09:24.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:24.098 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:09:24.098 -07 000000551 INF: FPGA: Recv ZPIEZORD 31192
17-03-17 23:09:24.108 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:24.108 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.581 V. Piezo Error = -9.2 V.
17-03-17 23:09:24.108 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.4 um, Read 10 ADC samples: Avg = 35352 (-166.6 uncal um), Error = 0.9 uncal um, Median = 35351 (-166.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35348 (-166.5 uncal um), Max = 35357 (-166.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:09:24.108 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35352, posNoise = 5, negNoise = 4
17-03-17 23:09:24.108 -07 000000610 INF: Z Motor: After move to -0.167425, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:09:24.108 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 23:09:24.108 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:09:24.108 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:09:24.108 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:09:24.108 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:09:24.108 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:09:24.108 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:09:24.108 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:09:24.108 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:09:24.108 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:09:24.108 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:09:24.108 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:09:24.108 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:09:24.118 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 23:09:24.118 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:09:24.118 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:09:24.118 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:09:24.118 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 23:09:24.128 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 23:09:24.128 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 23:09:24.128 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 23:09:24.128 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 468 468 225 225 36751 150\n [Camera]
17-03-17 23:09:24.328 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:09:24.798 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 660
17-03-17 23:09:24.798 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 660
17-03-17 23:09:24.798 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:09:24.798 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:09:24.798 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 23:09:24.798 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 660
17-03-17 23:09:24.798 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 660
17-03-17 23:09:24.798 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:09:24.798 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:09:24.798 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-17 23:09:24.988 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36751 853
17-03-17 23:09:25.138 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1003
17-03-17 23:09:25.178 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 23:09:25.178 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 23:09:25.178 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:09:25.178 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 23:09:25.178 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 23:09:25.178 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:09:25.178 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:09:25.178 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:09:25.178 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 23:09:25.188 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 23:09:25.368 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1228
17-03-17 23:09:25.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1228
17-03-17 23:09:25.368 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:09:25.368 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:09:25.368 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-17 23:09:25.368 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1228
17-03-17 23:09:25.368 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1228
17-03-17 23:09:25.368 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:09:25.368 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:09:25.368 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 23:09:25.558 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1423
17-03-17 23:09:25.558 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:09:25.558 -07 000000610 INF: FPGA: 'CAMDBLSNAP 468 468 225 225 36751 150' command took 2 ms to send, 1425 ms to get response, and 1430 ms overall
17-03-17 23:09:25.558 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:09:25.558 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.5185546875, Z-Position -0.167432099646668. ------
17-03-17 23:09:25.568 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:09:25.568 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17389 mm
17-03-17 23:09:25.568 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:09:25.568 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 23:09:25.568 -07 000000462 INF: Y Motor: Moving to 72.3626 mm, started at 71.5186 mm, delta = 0.8441 mm
17-03-17 23:09:25.568 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:09:25.568 -07 000000409 INF: Z Motor: Entering MoveAbsStepped (DAC = 37987, sync = True, waitForSettling = False)
17-03-17 23:09:25.568 -07 000000409 INF: Z Motor: Moving to -0.173893 mm, started at -0.167432 mm, distance = -6.46 um
17-03-17 23:09:25.578 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:09:25.578 -07 000000409 INF: FPGA: Xmit ZDACW 37987\n [Z Motor]
17-03-17 23:09:25.578 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 23:09:25.588 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:09:25.588 -07 000000409 INF: FPGA: 'ZDACW 37987' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 23:09:25.588 -07 000000623 INF: FPGA: Recv YRDPOS 146470
17-03-17 23:09:25.598 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 23:09:25.598 -07 000000462 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:09:25.598 -07 000000462 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:09:25.598 -07 000000462 INF: Y Motor: Moving 1350 steps-29
17-03-17 23:09:25.598 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:09:25.608 -07 000000409 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:09:25.608 -07 000000382 INF: FPGA: Recv ZDACR 37987
17-03-17 23:09:25.618 -07 000000409 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:09:25.618 -07 000000409 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-17 23:09:25.618 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:09:25.768 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 23:09:25.768 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 23:09:25.768 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:09:25.768 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 23:09:25.768 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 23:09:25.768 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:09:25.768 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:09:25.778 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 23:09:25.778 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 23:09:25.778 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 23:09:25.798 -07 000000576 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:09:25.798 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 223 ms overall
17-03-17 23:09:25.988 -07 000000448 INF: FPGA: Recv YMVTILE
17-03-17 23:09:25.988 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-17 23:09:26.028 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:09:26.038 -07 000000478 INF: FPGA: Recv YRDPOS 148171
17-03-17 23:09:26.038 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 23:09:26.038 -07 000000462 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:09:26.038 -07 000000462 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 23:09:26.038 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.844 mm, average velocity = 2.121 mm/sec
17-03-17 23:09:26.168 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 72, FrontChillerTemperature: 4.018051,
17-03-17 23:09:26.988 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:09:26.988 -07 000000482 INF: FPGA: Recv YRDPOS 148171
17-03-17 23:09:26.998 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:09:26.998 -07 000000462 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:09:27.018 -07 000000462 INF: Y Motor: After move to 72.362610, error = -0.013489, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:09:27.018 -07 000000462 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:09:27.018 -07 000000462 INF: Y Motor: Moved to 72.3491 after 1451 ms (table move)
17-03-17 23:09:27.018 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173893 mm (DAC = 37987)
17-03-17 23:09:27.018 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:27.028 -07 000000561 INF: FPGA: Recv ZSGSRD 36364
17-03-17 23:09:27.028 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 23:09:27.028 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:27.028 -07 000000576 INF: FPGA: Recv ZSGSRD 36362
17-03-17 23:09:27.038 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:09:27.038 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:27.038 -07 000000618 INF: FPGA: Recv ZSGSRD 36360
17-03-17 23:09:27.038 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:09:27.038 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 71. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1150, R2=1196, Total=2346. Warn if over 250 bubbles per interval.
17-03-17 23:09:27.048 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:27.048 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:27.048 -07 000000501 INF: FPGA: Recv ZSGSRD 36360
17-03-17 23:09:27.058 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:27.058 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:27.058 -07 000000551 INF: FPGA: Recv ZSGSRD 36361
17-03-17 23:09:27.068 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:27.068 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:27.068 -07 000000409 INF: FPGA: Recv ZSGSRD 36365
17-03-17 23:09:27.078 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:27.078 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:27.078 -07 000000593 INF: FPGA: Recv ZSGSRD 36354
17-03-17 23:09:27.088 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:27.088 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:27.088 -07 000000429 INF: FPGA: Recv ZSGSRD 36357
17-03-17 23:09:27.098 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:27.098 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:27.098 -07 000000547 INF: FPGA: Recv ZSGSRD 36360
17-03-17 23:09:27.108 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:27.108 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:27.108 -07 000000486 INF: FPGA: Recv ZSGSRD 36353
17-03-17 23:09:27.118 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:27.118 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:09:27.118 -07 000000576 INF: FPGA: Recv ZPIEZORD 32529
17-03-17 23:09:27.128 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:27.128 -07 000000502 INF: Z Motor: Piezo is near 49.5 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.796 V. Piezo Error = -8.5 V.
17-03-17 23:09:27.128 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.9 um, Read 10 ADC samples: Avg = 36360 (-173.0 uncal um), Error = 0.9 uncal um, Median = 36360 (-173.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36353 (-173.0 uncal um), Max = 36365 (-173.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 23:09:27.128 -07 000000502 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36360, posNoise = 5, negNoise = 7
17-03-17 23:09:27.128 -07 000000502 INF: Z Motor: After move to -0.173893, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:09:27.128 -07 000000502 INF: Z Motor: Settle wait time = 1453 ms, measure time = 101 ms (allowed 150 ms), total time = 1554 ms
17-03-17 23:09:27.128 -07 000000502 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 23:09:27.178 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-17 23:09:27.178 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:09:27.178 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:09:27.178 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:09:27.178 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:09:27.178 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:09:27.178 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:09:27.178 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:09:27.178 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 23:09:27.178 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:09:27.188 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:09:27.188 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:09:27.198 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 23:09:27.198 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 23:09:27.198 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:09:27.238 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:09:27.438 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:09:27.438 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:09:27.448 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:09:27.448 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) start.
17-03-17 23:09:27.478 -07 000000593 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:09:27.478 -07 000000478 INF: FPGA: Recv CAMSNAP
17-03-17 23:09:27.478 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 23:09:27.568 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) end. Duration was 124 ms.
17-03-17 23:09:27.568 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:09:27.568 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 23:09:27.568 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 126 ms.
17-03-17 23:09:27.588 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:09:27.588 -07 000000486 INF: Autofocus start
17-03-17 23:09:27.588 -07 000000486 INF: MeasureProfile start
17-03-17 23:09:27.588 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:09:27.598 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:09:27.598 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:09:27.598 -07 000000486 INF: MeasureProfile done
17-03-17 23:09:27.598 -07 000000486 INF: X=16  Z correction [um]=0.01042744
17-03-17 23:09:27.598 -07 000000486 INF: Autofocus finished
17-03-17 23:09:27.798 -07 000000482 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:09:27.798 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:09:27.798 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34912109375, Z-position -0.173907705485563. ----------
17-03-17 23:09:27.798 -07 000000610 INF: Cycle	72	Tile	16	Exposure Settings		A	468	G	225	T	225	C	468
17-03-17 23:09:27.808 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36502, sync = True, waitForSettling = True)
17-03-17 23:09:27.808 -07 000000610 INF: Z Motor: Moving to -0.167095 mm, started at -0.173908 mm, distance = 6.81 um
17-03-17 23:09:27.808 -07 000000610 INF: FPGA: Xmit ZDACW 36502\n [Z Motor]
17-03-17 23:09:27.808 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 23:09:27.818 -07 000000610 INF: FPGA: 'ZDACW 36502' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:09:27.818 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:09:27.818 -07 000000551 INF: FPGA: Recv ZDACR 36502
17-03-17 23:09:27.828 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:27.828 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:09:27.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:27.978 -07 000000501 INF: FPGA: Recv ZSGSRD 35296
17-03-17 23:09:27.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:27.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:27.988 -07 000000627 INF: FPGA: Recv ZSGSRD 35300
17-03-17 23:09:27.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:27.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:27.998 -07 000000382 INF: FPGA: Recv ZSGSRD 35298
17-03-17 23:09:28.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:28.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:28.008 -07 000000478 INF: FPGA: Recv ZSGSRD 35300
17-03-17 23:09:28.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:28.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:28.018 -07 000000475 INF: FPGA: Recv ZSGSRD 35305
17-03-17 23:09:28.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:28.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:28.028 -07 000000501 INF: FPGA: Recv ZSGSRD 35301
17-03-17 23:09:28.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:28.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:28.038 -07 000000462 INF: FPGA: Recv ZSGSRD 35303
17-03-17 23:09:28.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:28.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:28.048 -07 000000448 INF: FPGA: Recv ZSGSRD 35302
17-03-17 23:09:28.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:28.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:28.058 -07 000000478 INF: FPGA: Recv ZSGSRD 35299
17-03-17 23:09:28.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:28.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:28.068 -07 000000475 INF: FPGA: Recv ZSGSRD 35301
17-03-17 23:09:28.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:28.078 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:09:28.078 -07 000000618 INF: FPGA: Recv ZPIEZORD 31141
17-03-17 23:09:28.088 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:28.088 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.570 V. Piezo Error = -9.2 V.
17-03-17 23:09:28.088 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.1 um, Read 10 ADC samples: Avg = 35300 (-166.2 uncal um), Error = 0.9 uncal um, Median = 35300 (-166.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35296 (-166.2 uncal um), Max = 35305 (-166.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:09:28.088 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35300, posNoise = 5, negNoise = 4
17-03-17 23:09:28.088 -07 000000610 INF: Z Motor: After move to -0.167095, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:09:28.088 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 23:09:28.088 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:09:28.088 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:09:28.088 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:09:28.088 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:09:28.088 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:09:28.088 -07 000000409 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:09:28.088 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:09:28.088 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:09:28.088 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 23:09:28.088 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:09:28.088 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:09:28.088 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:09:28.098 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:09:28.098 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:09:28.098 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:09:28.098 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:09:28.108 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 23:09:28.108 -07 000000409 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 23:09:28.108 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 23:09:28.108 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 23:09:28.108 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 468 468 225 225 36678 150\n [Camera]
17-03-17 23:09:28.308 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:09:28.778 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 660
17-03-17 23:09:28.778 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 660
17-03-17 23:09:28.778 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:09:28.778 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:09:28.778 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 23:09:28.778 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 660
17-03-17 23:09:28.778 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 660
17-03-17 23:09:28.778 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:09:28.788 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:09:28.788 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 23:09:28.968 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36678 853
17-03-17 23:09:29.118 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1003
17-03-17 23:09:29.168 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 23:09:29.168 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 23:09:29.168 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:09:29.168 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 23:09:29.168 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 23:09:29.168 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:09:29.168 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:09:29.168 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 23:09:29.168 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:09:29.178 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 23:09:29.348 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1228
17-03-17 23:09:29.348 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1228
17-03-17 23:09:29.348 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:09:29.348 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:09:29.348 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 23:09:29.348 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1228
17-03-17 23:09:29.348 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1228
17-03-17 23:09:29.348 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:09:29.348 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:09:29.348 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 23:09:29.538 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1421
17-03-17 23:09:29.538 -07 000000623 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:09:29.538 -07 000000610 INF: FPGA: 'CAMDBLSNAP 468 468 225 225 36678 150' command took 2 ms to send, 1416 ms to get response, and 1427 ms overall
17-03-17 23:09:29.538 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:09:29.538 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.34912109375, Z-Position -0.167098040615297. ------
17-03-17 23:09:29.548 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17355 mm
17-03-17 23:09:29.548 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:09:29.548 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:09:29.548 -07 000000409 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 23:09:29.548 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 37913, sync = True, waitForSettling = False)
17-03-17 23:09:29.548 -07 000000618 INF: Z Motor: Moving to -0.173555 mm, started at -0.167098 mm, distance = -6.46 um
17-03-17 23:09:29.548 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:09:29.548 -07 000000409 INF: Y Motor: Moving to 73.1926 mm, started at 72.3491 mm, delta = 0.8435 mm
17-03-17 23:09:29.558 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:09:29.558 -07 000000618 INF: FPGA: Xmit ZDACW 37913\n [Z Motor]
17-03-17 23:09:29.558 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 23:09:29.568 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:09:29.568 -07 000000618 INF: FPGA: 'ZDACW 37913' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 23:09:29.568 -07 000000448 INF: FPGA: Recv YRDPOS 148171
17-03-17 23:09:29.578 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 23:09:29.578 -07 000000409 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:09:29.578 -07 000000409 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:09:29.578 -07 000000409 INF: Y Motor: Moving 1350 steps-28
17-03-17 23:09:29.578 -07 000000475 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:09:29.588 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:09:29.588 -07 000000541 INF: FPGA: Recv ZDACR 37913
17-03-17 23:09:29.598 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:09:29.598 -07 000000618 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-17 23:09:29.598 -07 000000409 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:09:29.728 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 23:09:29.728 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 23:09:29.728 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:09:29.728 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 23:09:29.728 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 23:09:29.728 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:09:29.728 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:09:29.738 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 23:09:29.738 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 23:09:29.738 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 23:09:29.778 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:09:29.778 -07 000000475 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 223 ms overall
17-03-17 23:09:29.968 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-17 23:09:29.968 -07 000000409 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 23:09:30.008 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:09:30.018 -07 000000462 INF: FPGA: Recv YRDPOS 149863
17-03-17 23:09:30.018 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 23:09:30.018 -07 000000409 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:09:30.018 -07 000000409 INF: Y Motor: Position error before settling (table move) = -35 encoder counts (-0.017 mm)
17-03-17 23:09:30.018 -07 000000409 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.843 mm, average velocity = 2.119 mm/sec
17-03-17 23:09:30.968 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:09:30.968 -07 000000448 INF: FPGA: Recv YRDPOS 149864
17-03-17 23:09:30.978 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:09:30.978 -07 000000409 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:09:30.998 -07 000000409 INF: Y Motor: After move to 73.192604, error = -0.016823, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:09:30.998 -07 000000409 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 23:09:30.998 -07 000000409 INF: Y Motor: Moved to 73.1758 after 1448 ms (table move)
17-03-17 23:09:30.998 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173555 mm (DAC = 37913)
17-03-17 23:09:30.998 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:31.008 -07 000000486 INF: FPGA: Recv ZSGSRD 36314
17-03-17 23:09:31.008 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 23:09:31.008 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:31.008 -07 000000478 INF: FPGA: Recv ZSGSRD 36312
17-03-17 23:09:31.018 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:09:31.018 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:31.018 -07 000000502 INF: FPGA: Recv ZSGSRD 36305
17-03-17 23:09:31.028 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:31.028 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:31.028 -07 000000593 INF: FPGA: Recv ZSGSRD 36308
17-03-17 23:09:31.038 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:31.038 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:31.038 -07 000000409 INF: FPGA: Recv ZSGSRD 36311
17-03-17 23:09:31.048 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:31.048 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:31.048 -07 000000462 INF: FPGA: Recv ZSGSRD 36303
17-03-17 23:09:31.058 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:31.058 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:31.058 -07 000000618 INF: FPGA: Recv ZSGSRD 36305
17-03-17 23:09:31.068 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:31.068 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:31.068 -07 000000486 INF: FPGA: Recv ZSGSRD 36301
17-03-17 23:09:31.078 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:31.078 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:31.078 -07 000000547 INF: FPGA: Recv ZSGSRD 36301
17-03-17 23:09:31.088 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:31.088 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:31.088 -07 000000501 INF: FPGA: Recv ZSGSRD 36307
17-03-17 23:09:31.098 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:31.098 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:09:31.098 -07 000000429 INF: FPGA: Recv ZPIEZORD 32471
17-03-17 23:09:31.108 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:31.108 -07 000000576 INF: Z Motor: Piezo is near 49.4 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.785 V. Piezo Error = -8.5 V.
17-03-17 23:09:31.108 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.6 um, Read 10 ADC samples: Avg = 36307 (-172.7 uncal um), Error = 0.9 uncal um, Median = 36306 (-172.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36301 (-172.6 uncal um), Max = 36314 (-172.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:09:31.108 -07 000000576 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36307, posNoise = 7, negNoise = 6
17-03-17 23:09:31.108 -07 000000576 INF: Z Motor: After move to -0.173555, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:09:31.108 -07 000000576 INF: Z Motor: Settle wait time = 1451 ms, measure time = 102 ms (allowed 150 ms), total time = 1553 ms
17-03-17 23:09:31.108 -07 000000576 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 23:09:31.158 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1606 ms
17-03-17 23:09:31.158 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:09:31.158 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:09:31.158 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:09:31.158 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:09:31.158 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:09:31.158 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:09:31.158 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:09:31.168 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:09:31.168 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:09:31.168 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:09:31.168 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:09:31.178 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 23:09:31.178 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 23:09:31.178 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:09:31.228 -07 000000623 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:09:31.428 -07 000000623 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:09:31.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:09:31.428 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:09:31.428 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2270629648, 0x0, 559484976) start.
17-03-17 23:09:31.468 -07 000000502 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:09:31.468 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 23:09:31.468 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 274 ms to get response, and 285 ms overall
17-03-17 23:09:31.538 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 72, FrontChillerTemperature: 4.026244,
17-03-17 23:09:31.548 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2270629648, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 23:09:31.548 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:09:31.548 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 23:09:31.548 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 23:09:31.568 -07 000000623 INF: Autofocus start
17-03-17 23:09:31.568 -07 000000623 INF: MeasureProfile start
17-03-17 23:09:31.578 -07 000000623 INF: MeasureProfile done
17-03-17 23:09:31.578 -07 000000623 INF: X=32  Z correction [um]=0.09220707
17-03-17 23:09:31.578 -07 000000623 INF: Autofocus finished
17-03-17 23:09:31.588 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:09:31.588 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:09:31.598 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 23:09:31.598 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:09:31.798 -07 000000415 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:09:31.798 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:09:31.798 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17578125, Z-position -0.17356722224205. ----------
17-03-17 23:09:31.798 -07 000000610 INF: Cycle	72	Tile	17	Exposure Settings		A	468	G	225	T	225	C	468
17-03-17 23:09:31.808 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36446, sync = True, waitForSettling = True)
17-03-17 23:09:31.808 -07 000000610 INF: Z Motor: Moving to -0.166839 mm, started at -0.173567 mm, distance = 6.73 um
17-03-17 23:09:31.808 -07 000000610 INF: FPGA: Xmit ZDACW 36446\n [Z Motor]
17-03-17 23:09:31.808 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 23:09:31.818 -07 000000610 INF: FPGA: 'ZDACW 36446' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:31.818 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:09:31.818 -07 000000415 INF: FPGA: Recv ZDACR 36446
17-03-17 23:09:31.828 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:31.828 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:09:31.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:31.978 -07 000000576 INF: FPGA: Recv ZSGSRD 35262
17-03-17 23:09:31.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:31.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:31.988 -07 000000478 INF: FPGA: Recv ZSGSRD 35260
17-03-17 23:09:31.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:31.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:31.998 -07 000000561 INF: FPGA: Recv ZSGSRD 35264
17-03-17 23:09:32.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:32.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:32.008 -07 000000462 INF: FPGA: Recv ZSGSRD 35264
17-03-17 23:09:32.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:32.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:32.018 -07 000000429 INF: FPGA: Recv ZSGSRD 35257
17-03-17 23:09:32.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:32.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:32.028 -07 000000561 INF: FPGA: Recv ZSGSRD 35261
17-03-17 23:09:32.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:32.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:32.038 -07 000000415 INF: FPGA: Recv ZSGSRD 35261
17-03-17 23:09:32.038 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:09:32.038 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 71. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1150, R2=1196, Total=2346. Warn if over 250 bubbles per interval.
17-03-17 23:09:32.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:32.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:32.048 -07 000000415 INF: FPGA: Recv ZSGSRD 35263
17-03-17 23:09:32.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:32.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:32.058 -07 000000618 INF: FPGA: Recv ZSGSRD 35262
17-03-17 23:09:32.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:09:32.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:32.068 -07 000000541 INF: FPGA: Recv ZSGSRD 35256
17-03-17 23:09:32.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:32.078 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:09:32.078 -07 000000482 INF: FPGA: Recv ZPIEZORD 31111
17-03-17 23:09:32.088 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:32.088 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.561 V. Piezo Error = -9.2 V.
17-03-17 23:09:32.088 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.8 um, Read 10 ADC samples: Avg = 35261 (-166.0 uncal um), Error = 0.9 uncal um, Median = 35262 (-166.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35256 (-165.9 uncal um), Max = 35264 (-166.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:09:32.088 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35261, posNoise = 3, negNoise = 5
17-03-17 23:09:32.088 -07 000000610 INF: Z Motor: After move to -0.166839, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:09:32.088 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 23:09:32.088 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:09:32.088 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:09:32.088 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:09:32.088 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:09:32.088 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:09:32.088 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:09:32.088 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:09:32.088 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:09:32.088 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:09:32.088 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:09:32.088 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 23:09:32.088 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:09:32.098 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:09:32.098 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:09:32.098 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:09:32.098 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:09:32.108 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-17 23:09:32.108 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 23:09:32.108 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 23:09:32.108 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:09:32.108 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 468 468 225 225 36622 150\n [Camera]
17-03-17 23:09:32.308 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:09:32.778 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 660
17-03-17 23:09:32.778 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 660
17-03-17 23:09:32.778 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:09:32.778 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:09:32.778 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2361360656, 0x0, 391868352) start.
17-03-17 23:09:32.788 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 660
17-03-17 23:09:32.788 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 660
17-03-17 23:09:32.788 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:09:32.788 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:09:32.788 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 23:09:32.978 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36622 853
17-03-17 23:09:33.128 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1003
17-03-17 23:09:33.158 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2361360656, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 23:09:33.158 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 23:09:33.158 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:09:33.158 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 23:09:33.158 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 23:09:33.158 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:09:33.168 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 23:09:33.168 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 23:09:33.168 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 23:09:33.168 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 23:09:33.348 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1228
17-03-17 23:09:33.348 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1228
17-03-17 23:09:33.348 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:09:33.348 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:09:33.348 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-17 23:09:33.348 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1228
17-03-17 23:09:33.348 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1228
17-03-17 23:09:33.348 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:09:33.348 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:09:33.348 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-17 23:09:33.538 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1421
17-03-17 23:09:33.538 -07 000000593 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:09:33.538 -07 000000610 INF: FPGA: 'CAMDBLSNAP 468 468 225 225 36622 150' command took 2 ms to send, 1417 ms to get response, and 1427 ms overall
17-03-17 23:09:33.548 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:09:33.548 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17578125, Z-Position -0.166847496341768. ------
17-03-17 23:09:33.548 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:09:33.548 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17325 mm
17-03-17 23:09:33.548 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:09:33.548 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 23:09:33.548 -07 000000541 INF: Y Motor: Moving to 74.0226 mm, started at 73.1758 mm, delta = 0.8468 mm
17-03-17 23:09:33.548 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:09:33.548 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 37846, sync = True, waitForSettling = False)
17-03-17 23:09:33.548 -07 000000561 INF: Z Motor: Moving to -0.173248 mm, started at -0.166847 mm, distance = -6.40 um
17-03-17 23:09:33.558 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:09:33.558 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:09:33.558 -07 000000627 INF: FPGA: Recv YRDPOS 149864
17-03-17 23:09:33.568 -07 000000561 INF: FPGA: Xmit ZDACW 37846\n [Z Motor]
17-03-17 23:09:33.568 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 23:09:33.568 -07 000000541 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:09:33.568 -07 000000541 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:09:33.568 -07 000000541 INF: Y Motor: Moving 1355 steps-35
17-03-17 23:09:33.568 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 23:09:33.578 -07 000000482 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:09:33.578 -07 000000561 INF: FPGA: 'ZDACW 37846' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 23:09:33.588 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:09:33.598 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:09:33.598 -07 000000409 INF: FPGA: Recv ZDACR 37846
17-03-17 23:09:33.608 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:09:33.608 -07 000000561 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 23:09:33.738 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 23:09:33.738 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 23:09:33.738 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:09:33.738 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 23:09:33.738 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 23:09:33.738 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:09:33.738 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:09:33.748 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 23:09:33.748 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 23:09:33.748 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 23:09:33.778 -07 000000551 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:09:33.778 -07 000000482 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 23:09:33.958 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-17 23:09:33.958 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 23:09:33.998 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:09:33.998 -07 000000475 INF: FPGA: Recv YRDPOS 151568
17-03-17 23:09:34.008 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:09:34.008 -07 000000541 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:09:34.008 -07 000000541 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 23:09:34.008 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.847 mm, average velocity = 2.128 mm/sec
17-03-17 23:09:34.958 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:09:34.958 -07 000000623 INF: FPGA: Recv YRDPOS 151568
17-03-17 23:09:34.968 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:09:34.968 -07 000000541 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:09:34.978 -07 000000541 INF: Y Motor: After move to 74.022606, error = -0.014793, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:09:34.978 -07 000000541 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:09:34.978 -07 000000541 INF: Y Motor: Moved to 74.0078 after 1432 ms (table move)
17-03-17 23:09:34.988 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173248 mm (DAC = 37846)
17-03-17 23:09:34.988 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:34.988 -07 000000486 INF: FPGA: Recv ZSGSRD 36270
17-03-17 23:09:34.998 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:09:34.998 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:34.998 -07 000000478 INF: FPGA: Recv ZSGSRD 36261
17-03-17 23:09:35.008 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:35.008 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:35.008 -07 000000618 INF: FPGA: Recv ZSGSRD 36263
17-03-17 23:09:35.018 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:35.018 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:35.018 -07 000000502 INF: FPGA: Recv ZSGSRD 36260
17-03-17 23:09:35.028 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:35.028 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:35.028 -07 000000501 INF: FPGA: Recv ZSGSRD 36260
17-03-17 23:09:35.038 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:35.038 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:35.038 -07 000000409 INF: FPGA: Recv ZSGSRD 36255
17-03-17 23:09:35.048 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:35.048 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:35.048 -07 000000561 INF: FPGA: Recv ZSGSRD 36259
17-03-17 23:09:35.058 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:35.058 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:35.058 -07 000000547 INF: FPGA: Recv ZSGSRD 36258
17-03-17 23:09:35.068 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:35.068 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:35.068 -07 000000482 INF: FPGA: Recv ZSGSRD 36253
17-03-17 23:09:35.078 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:35.078 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:35.078 -07 000000462 INF: FPGA: Recv ZSGSRD 36260
17-03-17 23:09:35.088 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:35.088 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:09:35.088 -07 000000409 INF: FPGA: Recv ZPIEZORD 32435
17-03-17 23:09:35.098 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:35.098 -07 000000382 INF: Z Motor: Piezo is near 49.3 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.775 V. Piezo Error = -8.5 V.
17-03-17 23:09:35.098 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.2 um, Read 10 ADC samples: Avg = 36260 (-172.4 uncal um), Error = 0.9 uncal um, Median = 36260 (-172.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36253 (-172.3 uncal um), Max = 36270 (-172.4 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 23:09:35.098 -07 000000382 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36260, posNoise = 10, negNoise = 7
17-03-17 23:09:35.098 -07 000000382 INF: Z Motor: After move to -0.173248, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:09:35.098 -07 000000382 INF: Z Motor: Settle wait time = 1433 ms, measure time = 108 ms (allowed 150 ms), total time = 1541 ms
17-03-17 23:09:35.098 -07 000000382 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 23:09:35.148 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1595 ms
17-03-17 23:09:35.148 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:09:35.148 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:09:35.148 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:09:35.148 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:09:35.148 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:09:35.148 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:09:35.148 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:09:35.148 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:09:35.148 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:09:35.158 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:09:35.158 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:09:35.158 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 23:09:35.158 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 23:09:35.168 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:09:35.208 -07 000000415 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:09:35.408 -07 000000475 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:09:35.408 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:09:35.408 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:09:35.408 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2522190040, 0x0, 559484976) start.
17-03-17 23:09:35.448 -07 000000502 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:09:35.448 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-17 23:09:35.448 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 23:09:35.528 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2522190040, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 23:09:35.528 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:09:35.528 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 23:09:35.528 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 23:09:35.548 -07 000000501 INF: Autofocus start
17-03-17 23:09:35.548 -07 000000501 INF: MeasureProfile start
17-03-17 23:09:35.548 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:09:35.548 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:09:35.558 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:09:35.558 -07 000000486 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:09:35.558 -07 000000501 INF: MeasureProfile done
17-03-17 23:09:35.558 -07 000000501 INF: X=0  Z correction [um]=-0.0713522
17-03-17 23:09:35.558 -07 000000501 INF: Autofocus finished
17-03-17 23:09:35.758 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:09:35.758 -07 000000486 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 205 ms overall
17-03-17 23:09:35.768 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0078125, Z-position -0.173265284271387. ----------
17-03-17 23:09:35.768 -07 000000610 INF: Cycle	72	Tile	18	Exposure Settings		A	468	G	225	T	225	C	468
17-03-17 23:09:35.768 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36343, sync = True, waitForSettling = True)
17-03-17 23:09:35.768 -07 000000610 INF: Z Motor: Moving to -0.166368 mm, started at -0.173265 mm, distance = 6.90 um
17-03-17 23:09:35.768 -07 000000610 INF: FPGA: Xmit ZDACW 36343\n [Z Motor]
17-03-17 23:09:35.768 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 23:09:35.778 -07 000000610 INF: FPGA: 'ZDACW 36343' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:09:35.778 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:09:35.778 -07 000000502 INF: FPGA: Recv ZDACR 36343
17-03-17 23:09:35.788 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:35.788 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:09:35.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:35.938 -07 000000551 INF: FPGA: Recv ZSGSRD 35186
17-03-17 23:09:35.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:09:35.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:35.948 -07 000000502 INF: FPGA: Recv ZSGSRD 35186
17-03-17 23:09:35.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:35.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:35.958 -07 000000551 INF: FPGA: Recv ZSGSRD 35186
17-03-17 23:09:35.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:35.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:35.968 -07 000000475 INF: FPGA: Recv ZSGSRD 35192
17-03-17 23:09:35.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:35.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:35.978 -07 000000502 INF: FPGA: Recv ZSGSRD 35189
17-03-17 23:09:35.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:35.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:35.988 -07 000000547 INF: FPGA: Recv ZSGSRD 35184
17-03-17 23:09:35.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:35.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:35.998 -07 000000475 INF: FPGA: Recv ZSGSRD 35187
17-03-17 23:09:36.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:36.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:36.008 -07 000000501 INF: FPGA: Recv ZSGSRD 35183
17-03-17 23:09:36.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:36.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:36.018 -07 000000415 INF: FPGA: Recv ZSGSRD 35191
17-03-17 23:09:36.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:36.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:36.028 -07 000000429 INF: FPGA: Recv ZSGSRD 35187
17-03-17 23:09:36.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:36.038 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:09:36.038 -07 000000462 INF: FPGA: Recv ZPIEZORD 31034
17-03-17 23:09:36.048 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:36.048 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.546 V. Piezo Error = -9.2 V.
17-03-17 23:09:36.048 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.4 um, Read 10 ADC samples: Avg = 35187 (-165.5 uncal um), Error = 0.9 uncal um, Median = 35186 (-165.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35183 (-165.5 uncal um), Max = 35192 (-165.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:09:36.048 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35187, posNoise = 5, negNoise = 4
17-03-17 23:09:36.048 -07 000000610 INF: Z Motor: After move to -0.166368, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:09:36.048 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 23:09:36.048 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:09:36.048 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:09:36.048 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:09:36.048 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:09:36.048 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:09:36.048 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:09:36.048 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:09:36.048 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:09:36.048 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 23:09:36.048 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:09:36.048 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:09:36.048 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:09:36.058 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:09:36.058 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:09:36.058 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:09:36.058 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:09:36.068 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 23:09:36.068 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 23:09:36.068 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 23:09:36.068 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 23:09:36.068 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 468 468 225 225 36520 150\n [Camera]
17-03-17 23:09:36.268 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:09:36.738 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 660
17-03-17 23:09:36.738 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 660
17-03-17 23:09:36.748 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 660
17-03-17 23:09:36.748 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:09:36.748 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 660
17-03-17 23:09:36.748 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:09:36.748 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 23:09:36.748 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:09:36.748 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:09:36.748 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-17 23:09:36.908 -07 000000593 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 72, FrontChillerTemperature: 3.999021,
17-03-17 23:09:36.938 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36520 853
17-03-17 23:09:37.038 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:09:37.038 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 71. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1150, R2=1196, Total=2346. Warn if over 250 bubbles per interval.
17-03-17 23:09:37.078 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1003
17-03-17 23:09:37.138 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 23:09:37.138 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 23:09:37.138 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:09:37.148 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 23:09:37.148 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 23:09:37.148 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:09:37.148 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:09:37.148 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:09:37.148 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 23:09:37.158 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 23:09:37.308 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1228
17-03-17 23:09:37.308 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1228
17-03-17 23:09:37.308 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1228
17-03-17 23:09:37.308 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1228
17-03-17 23:09:37.308 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:09:37.308 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:09:37.308 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start.
17-03-17 23:09:37.308 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:09:37.458 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:09:37.458 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 23:09:37.498 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP 1420
17-03-17 23:09:37.498 -07 000000551 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:09:37.498 -07 000000610 INF: FPGA: 'CAMDBLSNAP 468 468 225 225 36520 150' command took 2 ms to send, 1417 ms to get response, and 1427 ms overall
17-03-17 23:09:37.498 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:09:37.498 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0078125, Z-Position -0.166372104643278. ------
17-03-17 23:09:37.508 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:09:37.508 -07 000000448 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17280 mm
17-03-17 23:09:37.508 -07 000000448 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:09:37.508 -07 000000627 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 23:09:37.508 -07 000000627 INF: Y Motor: Moving to 74.8526 mm, started at 74.0078 mm, delta = 0.8448 mm
17-03-17 23:09:37.508 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:09:37.508 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 37748, sync = True, waitForSettling = False)
17-03-17 23:09:37.508 -07 000000502 INF: Z Motor: Moving to -0.172799 mm, started at -0.166372 mm, distance = -6.43 um
17-03-17 23:09:37.518 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:09:37.518 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:09:37.518 -07 000000462 INF: FPGA: Recv YRDPOS 151569
17-03-17 23:09:37.528 -07 000000502 INF: FPGA: Xmit ZDACW 37748\n [Z Motor]
17-03-17 23:09:37.528 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 23:09:37.528 -07 000000627 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:09:37.528 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 23:09:37.528 -07 000000627 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:09:37.528 -07 000000627 INF: Y Motor: Moving 1351 steps-30
17-03-17 23:09:37.538 -07 000000415 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:09:37.538 -07 000000502 INF: FPGA: 'ZDACW 37748' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 23:09:37.548 -07 000000627 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:09:37.558 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:09:37.558 -07 000000547 INF: FPGA: Recv ZDACR 37748
17-03-17 23:09:37.568 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:09:37.568 -07 000000502 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 23:09:37.728 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 415 ms.
17-03-17 23:09:37.728 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 416 ms.
17-03-17 23:09:37.728 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:09:37.738 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 23:09:37.738 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 422 ms.
17-03-17 23:09:37.738 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:09:37.738 -07 000000415 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 23:09:37.848 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 23:09:37.848 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 23:09:37.848 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:09:37.848 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 23:09:37.858 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 545 ms.
17-03-17 23:09:37.918 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-17 23:09:37.918 -07 000000627 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-17 23:09:37.948 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:09:37.948 -07 000000482 INF: FPGA: Recv YRDPOS 153255
17-03-17 23:09:37.958 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:09:37.958 -07 000000627 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:09:37.958 -07 000000627 INF: Y Motor: Position error before settling (table move) = -43 encoder counts (-0.021 mm)
17-03-17 23:09:37.958 -07 000000627 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.845 mm, average velocity = 2.144 mm/sec
17-03-17 23:09:38.908 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:09:38.908 -07 000000551 INF: FPGA: Recv YRDPOS 153255
17-03-17 23:09:38.918 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:09:38.918 -07 000000627 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:09:38.928 -07 000000627 INF: Y Motor: After move to 74.852608, error = -0.021065, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:09:38.928 -07 000000627 INF: Y Motor: Position error after settling (table move) = -43 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:09:38.928 -07 000000627 INF: Y Motor: Moved to 74.8315 after 1420 ms (table move)
17-03-17 23:09:38.938 -07 000000448 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172799 mm (DAC = 37748)
17-03-17 23:09:38.938 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:38.938 -07 000000475 INF: FPGA: Recv ZSGSRD 36189
17-03-17 23:09:38.948 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:09:38.948 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:38.948 -07 000000429 INF: FPGA: Recv ZSGSRD 36183
17-03-17 23:09:38.958 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:38.958 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:38.958 -07 000000593 INF: FPGA: Recv ZSGSRD 36193
17-03-17 23:09:38.968 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:38.968 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:38.968 -07 000000551 INF: FPGA: Recv ZSGSRD 36185
17-03-17 23:09:38.978 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:38.978 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:38.978 -07 000000502 INF: FPGA: Recv ZSGSRD 36184
17-03-17 23:09:38.988 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:38.988 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:38.988 -07 000000623 INF: FPGA: Recv ZSGSRD 36193
17-03-17 23:09:38.998 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:38.998 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:38.998 -07 000000561 INF: FPGA: Recv ZSGSRD 36195
17-03-17 23:09:39.008 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:39.008 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:39.008 -07 000000478 INF: FPGA: Recv ZSGSRD 36196
17-03-17 23:09:39.018 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:39.018 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:39.018 -07 000000618 INF: FPGA: Recv ZSGSRD 36185
17-03-17 23:09:39.028 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:39.028 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:39.028 -07 000000486 INF: FPGA: Recv ZSGSRD 36184
17-03-17 23:09:39.038 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:39.038 -07 000000448 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:09:39.038 -07 000000475 INF: FPGA: Recv ZPIEZORD 32338
17-03-17 23:09:39.048 -07 000000448 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:39.048 -07 000000448 INF: Z Motor: Piezo is near 49.1 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.760 V. Piezo Error = -8.5 V.
17-03-17 23:09:39.048 -07 000000448 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.8 um, Read 10 ADC samples: Avg = 36189 (-171.9 uncal um), Error = 0.9 uncal um, Median = 36187 (-171.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36183 (-171.9 uncal um), Max = 36196 (-172.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:09:39.048 -07 000000448 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36189, posNoise = 7, negNoise = 6
17-03-17 23:09:39.048 -07 000000448 INF: Z Motor: After move to -0.172799, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:09:39.048 -07 000000448 INF: Z Motor: Settle wait time = 1424 ms, measure time = 109 ms (allowed 150 ms), total time = 1533 ms
17-03-17 23:09:39.048 -07 000000448 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 23:09:39.098 -07 000000448 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1586 ms
17-03-17 23:09:39.098 -07 000000448 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:09:39.098 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:09:39.098 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:09:39.098 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:09:39.098 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:09:39.098 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:09:39.098 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:09:39.098 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:09:39.098 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:09:39.108 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 23:09:39.108 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:09:39.118 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 23:09:39.118 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 23:09:39.118 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:09:39.168 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:09:39.368 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:09:39.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:09:39.368 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:09:39.368 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-17 23:09:39.408 -07 000000541 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:09:39.408 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-17 23:09:39.408 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 23:09:39.498 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 23:09:39.498 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:09:39.498 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:09:39.498 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 23:09:39.508 -07 000000429 INF: Autofocus start
17-03-17 23:09:39.508 -07 000000429 INF: MeasureProfile start
17-03-17 23:09:39.508 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:09:39.508 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:09:39.518 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:09:39.518 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:09:39.518 -07 000000429 INF: MeasureProfile done
17-03-17 23:09:39.518 -07 000000429 INF: X=-64  Z correction [um]=-0.4038377
17-03-17 23:09:39.518 -07 000000429 INF: Autofocus finished
17-03-17 23:09:39.718 -07 000000547 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:09:39.718 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:09:39.728 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83154296875, Z-position -0.172809165209322. ----------
17-03-17 23:09:39.728 -07 000000610 INF: Cycle	72	Tile	19	Exposure Settings		A	468	G	225	T	225	C	468
17-03-17 23:09:39.728 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36173, sync = True, waitForSettling = True)
17-03-17 23:09:39.728 -07 000000610 INF: Z Motor: Moving to -0.165589 mm, started at -0.172809 mm, distance = 7.22 um
17-03-17 23:09:39.728 -07 000000610 INF: FPGA: Xmit ZDACW 36173\n [Z Motor]
17-03-17 23:09:39.728 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 23:09:39.738 -07 000000610 INF: FPGA: 'ZDACW 36173' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:09:39.738 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:09:39.738 -07 000000541 INF: FPGA: Recv ZDACR 36173
17-03-17 23:09:39.748 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:39.748 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:09:39.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:39.898 -07 000000623 INF: FPGA: Recv ZSGSRD 35068
17-03-17 23:09:39.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:09:39.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:39.908 -07 000000482 INF: FPGA: Recv ZSGSRD 35070
17-03-17 23:09:39.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:39.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:39.918 -07 000000561 INF: FPGA: Recv ZSGSRD 35063
17-03-17 23:09:39.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:39.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:39.928 -07 000000502 INF: FPGA: Recv ZSGSRD 35063
17-03-17 23:09:39.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:39.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:39.938 -07 000000541 INF: FPGA: Recv ZSGSRD 35073
17-03-17 23:09:39.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:39.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:39.948 -07 000000486 INF: FPGA: Recv ZSGSRD 35063
17-03-17 23:09:39.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:39.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:39.958 -07 000000482 INF: FPGA: Recv ZSGSRD 35070
17-03-17 23:09:39.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:39.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:39.968 -07 000000475 INF: FPGA: Recv ZSGSRD 35065
17-03-17 23:09:39.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:39.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:39.978 -07 000000502 INF: FPGA: Recv ZSGSRD 35060
17-03-17 23:09:39.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:39.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:39.988 -07 000000415 INF: FPGA: Recv ZSGSRD 35068
17-03-17 23:09:39.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:39.998 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:09:39.998 -07 000000551 INF: FPGA: Recv ZPIEZORD 30868
17-03-17 23:09:40.008 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:40.008 -07 000000610 INF: Z Motor: Piezo is near 45.9 V (nominally 0 to 100 V), expect near 55.2 V, since DAC is at 5.520 V. Piezo Error = -9.3 V.
17-03-17 23:09:40.008 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.6 um, Read 10 ADC samples: Avg = 35066 (-164.7 uncal um), Error = 0.9 uncal um, Median = 35066 (-164.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35060 (-164.7 uncal um), Max = 35073 (-164.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:09:40.008 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35066, posNoise = 7, negNoise = 6
17-03-17 23:09:40.008 -07 000000610 INF: Z Motor: After move to -0.165589, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:09:40.008 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 23:09:40.008 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:09:40.008 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:09:40.008 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:09:40.008 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:09:40.008 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:09:40.008 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:09:40.008 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:09:40.008 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:09:40.008 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:09:40.008 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:09:40.008 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:09:40.008 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:09:40.018 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:09:40.018 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:09:40.018 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:09:40.018 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:09:40.018 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 23:09:40.018 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 23:09:40.028 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 23:09:40.028 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 23:09:40.028 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 468 468 225 225 36349 150\n [Camera]
17-03-17 23:09:40.228 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:09:40.698 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 663
17-03-17 23:09:40.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 663
17-03-17 23:09:40.698 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:09:40.698 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 663
17-03-17 23:09:40.698 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 663
17-03-17 23:09:40.708 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:09:40.708 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:09:40.718 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 23:09:40.718 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:09:40.718 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-17 23:09:40.888 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36349 853
17-03-17 23:09:41.038 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1003
17-03-17 23:09:41.088 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 23:09:41.088 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 23:09:41.088 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:09:41.088 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 374 ms.
17-03-17 23:09:41.088 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 23:09:41.088 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:09:41.088 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:09:41.098 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:09:41.098 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 23:09:41.098 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 23:09:41.268 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1228
17-03-17 23:09:41.268 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1228
17-03-17 23:09:41.268 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:09:41.388 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1228
17-03-17 23:09:41.388 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1228
17-03-17 23:09:41.388 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:09:41.388 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:09:41.388 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 23:09:41.388 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:09:41.388 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-17 23:09:41.458 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP 1421
17-03-17 23:09:41.458 -07 000000547 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:09:41.458 -07 000000610 INF: FPGA: 'CAMDBLSNAP 468 468 225 225 36349 150' command took 2 ms to send, 1421 ms to get response, and 1427 ms overall
17-03-17 23:09:41.778 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 23:09:41.778 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 23:09:41.778 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:09:41.778 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 23:09:41.778 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 23:09:41.778 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:09:41.778 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:09:41.788 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:09:41.788 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 520 ms.
17-03-17 23:09:41.788 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 23:09:41.788 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 23:09:41.828 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 23:09:41.828 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 23:09:41.868 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-17 23:09:41.868 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-17 23:09:41.868 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 23:09:41.878 -07 000000415 INF: FPGA: Recv EMCUR 
17-03-17 23:09:41.878 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 23:09:41.878 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-17 23:09:42.038 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:09:42.038 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 71. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1150, R2=1196, Total=2346. Warn if over 250 bubbles per interval.
17-03-17 23:09:42.288 -07 000000593 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 72, FrontChillerTemperature: 4.005817,
17-03-17 23:09:42.378 -07 000000429 INF: FPGA: Recv EMIN
17-03-17 23:09:42.378 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 494 ms to get response, and 502 ms overall
17-03-17 23:09:42.378 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-17 23:09:42.378 -07 000000576 INF: FPGA: Recv EMCUR 
17-03-17 23:09:42.388 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:09:42.388 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:09:42.388 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83154296875, Z-Position -0.165594774974125. ------
17-03-17 23:09:42.388 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:09:42.388 -07 000000541 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.14019 mm
17-03-17 23:09:42.388 -07 000000541 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:09:42.388 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:09:42.388 -07 000000448 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 23:09:42.388 -07 000000448 INF: Y Motor: Moving to 59.9126 mm, started at 74.8315 mm, delta = -14.9189 mm
17-03-17 23:09:42.398 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:09:42.398 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 30625, sync = True, waitForSettling = False)
17-03-17 23:09:42.398 -07 000000627 INF: Z Motor: Moving to -0.140192 mm, started at -0.165595 mm, distance = 25.40 um
17-03-17 23:09:42.398 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:09:42.398 -07 000000382 INF: FPGA: Recv YRDPOS 153256
17-03-17 23:09:42.408 -07 000000448 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:42.408 -07 000000448 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:09:42.408 -07 000000593 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:09:42.408 -07 000000448 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-17 23:09:42.408 -07 000000448 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 23:09:42.418 -07 000000627 INF: FPGA: Xmit ZDACW 30625\n [Z Motor]
17-03-17 23:09:42.418 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 23:09:42.428 -07 000000448 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 23:09:42.428 -07 000000627 INF: FPGA: 'ZDACW 30625' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:09:42.438 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:09:42.438 -07 000000618 INF: FPGA: Recv ZDACR 30625
17-03-17 23:09:42.448 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:09:42.448 -07 000000627 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 23:09:42.608 -07 000000547 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:09:42.608 -07 000000593 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 214 ms overall
17-03-17 23:09:44.048 -07 000000576 INF: FPGA: Recv YMVTO 122703 23904
17-03-17 23:09:44.048 -07 000000448 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1619 ms to get response, and 1642 ms overall
17-03-17 23:09:44.048 -07 000000448 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 23:09:44.048 -07 000000448 INF: Y Motor: To move from 74.832 to 59.913 (-14.919 mm) should take 23871 steps, but required 23904 steps (14.940 mm). Slippage = 0.021 mm (0.00%).
17-03-17 23:09:44.048 -07 000000448 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1643 ms, distance = 14.919 mm, average velocity = 9.080 mm/sec
17-03-17 23:09:46.898 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:09:46.898 -07 000000409 INF: FPGA: Recv YRDPOS 122697
17-03-17 23:09:46.908 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:46.908 -07 000000448 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:09:46.938 -07 000000448 INF: Y Motor: After move to 59.912609, error = -0.001965, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:09:46.938 -07 000000448 INF: Y Motor: Position error after settling = -4 encoder counts (-0.002 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-17 23:09:46.938 -07 000000448 INF: Y Motor: Moved to 59.9106 after 4544 ms
17-03-17 23:09:46.938 -07 000000541 INF: Z Motor: EndOfMoveAbsStepped: target = -0.140192 mm (DAC = 30625)
17-03-17 23:09:46.938 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:46.948 -07 000000561 INF: FPGA: Recv ZSGSRD 31114
17-03-17 23:09:46.948 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:09:46.948 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:46.948 -07 000000502 INF: FPGA: Recv ZSGSRD 31117
17-03-17 23:09:46.958 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:46.958 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:46.958 -07 000000501 INF: FPGA: Recv ZSGSRD 31113
17-03-17 23:09:46.968 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:46.968 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:46.968 -07 000000623 INF: FPGA: Recv ZSGSRD 31117
17-03-17 23:09:46.978 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:46.978 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:46.978 -07 000000415 INF: FPGA: Recv ZSGSRD 31114
17-03-17 23:09:46.988 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:46.988 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:46.988 -07 000000561 INF: FPGA: Recv ZSGSRD 31112
17-03-17 23:09:46.998 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:46.998 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:46.998 -07 000000429 INF: FPGA: Recv ZSGSRD 31112
17-03-17 23:09:47.008 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:47.008 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:47.008 -07 000000576 INF: FPGA: Recv ZSGSRD 31115
17-03-17 23:09:47.018 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:47.018 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:47.018 -07 000000547 INF: FPGA: Recv ZSGSRD 31111
17-03-17 23:09:47.028 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:47.028 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:47.028 -07 000000415 INF: FPGA: Recv ZSGSRD 31110
17-03-17 23:09:47.038 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:47.038 -07 000000541 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:09:47.038 -07 000000623 INF: FPGA: Recv ZPIEZORD 26716
17-03-17 23:09:47.038 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:09:47.038 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 71. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1150, R2=1196, Total=2346. Warn if over 250 bubbles per interval.
17-03-17 23:09:47.048 -07 000000541 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:47.048 -07 000000541 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 46.7 V, since DAC is at 4.673 V. Piezo Error = -9.7 V.
17-03-17 23:09:47.048 -07 000000541 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.2 um, Read 10 ADC samples: Avg = 31114 (-139.4 uncal um), Error = 0.8 uncal um, Median = 31114 (-139.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 31110 (-139.4 uncal um), Max = 31117 (-139.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:09:47.048 -07 000000541 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31114, posNoise = 3, negNoise = 4
17-03-17 23:09:47.048 -07 000000541 INF: Z Motor: After move to -0.140192, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:09:47.048 -07 000000541 INF: Z Motor: Settle wait time = 4546 ms, measure time = 103 ms (allowed 150 ms), total time = 4649 ms
17-03-17 23:09:47.048 -07 000000541 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 23:09:47.098 -07 000000541 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4703 ms
17-03-17 23:09:47.098 -07 000000541 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:09:47.098 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:09:47.098 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:09:47.098 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:09:47.098 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:09:47.098 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:09:47.098 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:09:47.098 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:09:47.098 -07 000000593 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 23:09:47.128 -07 000000593 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-17 23:09:47.128 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:09:47.128 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 23:09:47.128 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:09:47.138 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 23:09:47.138 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 42 ms.
17-03-17 23:09:47.148 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:09:47.188 -07 000000486 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:09:47.388 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:09:47.388 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:09:47.388 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:09:47.388 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) start.
17-03-17 23:09:47.428 -07 000000382 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:09:47.428 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-17 23:09:47.428 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 23:09:47.518 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 23:09:47.518 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:09:47.518 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:09:47.518 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 23:09:47.628 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:09:47.628 -07 000000478 INF: Image SNR check: start
17-03-17 23:09:47.628 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:09:47.638 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:09:47.638 -07 000000478 INF: Image SNR check: pass  [peak (Max-Min)=56.23]
17-03-17 23:09:47.638 -07 000000478 INF: Autofocus start
17-03-17 23:09:47.638 -07 000000478 INF: MeasureProfile start
17-03-17 23:09:47.648 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 72, FrontChillerTemperature: 4.011254,
17-03-17 23:09:47.658 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:09:47.658 -07 000000478 INF: MeasureProfile done
17-03-17 23:09:47.658 -07 000000478 INF: X=-8  Z correction [um]=-0.04234553
17-03-17 23:09:47.658 -07 000000478 INF: Autofocus finished
17-03-17 23:09:47.858 -07 000000478 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:09:47.858 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 23:09:47.858 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91064453125, Z-position -0.140206288589885. ----------
17-03-17 23:09:47.858 -07 000000610 INF: Cycle	72	Tile	1	Exposure Settings		A	468	G	225	T	225	C	468
17-03-17 23:09:47.868 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29128, sync = True, waitForSettling = True)
17-03-17 23:09:47.868 -07 000000610 INF: Z Motor: Moving to -0.133339 mm, started at -0.140206 mm, distance = 6.87 um
17-03-17 23:09:47.868 -07 000000610 INF: FPGA: Xmit ZDACW 29128\n [Z Motor]
17-03-17 23:09:47.868 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 23:09:47.878 -07 000000610 INF: FPGA: 'ZDACW 29128' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:47.878 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:09:47.878 -07 000000561 INF: FPGA: Recv ZDACR 29128
17-03-17 23:09:47.888 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:47.888 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:09:48.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:48.038 -07 000000618 INF: FPGA: Recv ZSGSRD 30043
17-03-17 23:09:48.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:09:48.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:48.048 -07 000000502 INF: FPGA: Recv ZSGSRD 30051
17-03-17 23:09:48.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:48.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:48.058 -07 000000551 INF: FPGA: Recv ZSGSRD 30045
17-03-17 23:09:48.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:48.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:48.068 -07 000000462 INF: FPGA: Recv ZSGSRD 30033
17-03-17 23:09:48.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:48.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:48.078 -07 000000576 INF: FPGA: Recv ZSGSRD 30045
17-03-17 23:09:48.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:48.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:48.088 -07 000000482 INF: FPGA: Recv ZSGSRD 30049
17-03-17 23:09:48.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:48.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:48.098 -07 000000502 INF: FPGA: Recv ZSGSRD 30043
17-03-17 23:09:48.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:48.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:48.108 -07 000000475 INF: FPGA: Recv ZSGSRD 30053
17-03-17 23:09:48.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:48.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:48.118 -07 000000462 INF: FPGA: Recv ZSGSRD 30045
17-03-17 23:09:48.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:48.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:48.128 -07 000000576 INF: FPGA: Recv ZSGSRD 30051
17-03-17 23:09:48.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:48.138 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:09:48.138 -07 000000501 INF: FPGA: Recv ZPIEZORD 25567
17-03-17 23:09:48.148 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:48.148 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.445 V. Piezo Error = -9.8 V.
17-03-17 23:09:48.148 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.3 um, Read 10 ADC samples: Avg = 30046 (-132.6 uncal um), Error = 0.8 uncal um, Median = 30045 (-132.6 uncal um), StdDev = 6 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 30033 (-132.5 uncal um), Max = 30053 (-132.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 13 (0.1 uncal um)
17-03-17 23:09:48.148 -07 000000610 INF: Z Motor: ADC noise = 13, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30046, posNoise = 7, negNoise = 13
17-03-17 23:09:48.148 -07 000000610 INF: Z Motor: After move to -0.133339, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:09:48.148 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 23:09:48.148 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:09:48.148 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:09:48.148 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:09:48.148 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:09:48.148 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:09:48.148 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:09:48.148 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:09:48.148 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:09:48.148 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:09:48.148 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 23:09:48.148 -07 000000547 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 23:09:48.148 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:09:48.158 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:09:48.158 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:09:48.168 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 23:09:48.168 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 23:09:48.168 -07 000000547 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 20 ms.
17-03-17 23:09:48.168 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:09:48.178 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 23:09:48.178 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:09:48.178 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 23:09:48.178 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 33 ms.
17-03-17 23:09:48.188 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 468 468 225 225 29305 150\n [Camera]
17-03-17 23:09:48.378 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:09:48.848 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 660
17-03-17 23:09:48.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 660
17-03-17 23:09:48.848 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:09:48.848 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:09:48.858 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-17 23:09:48.858 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 660
17-03-17 23:09:48.858 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 660
17-03-17 23:09:48.858 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:09:48.858 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:09:48.858 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 23:09:49.048 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29305 853
17-03-17 23:09:49.198 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1003
17-03-17 23:09:49.228 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 23:09:49.228 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 23:09:49.228 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:09:49.228 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:09:49.228 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 23:09:49.228 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 23:09:49.228 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:09:49.238 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:09:49.238 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 23:09:49.238 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 23:09:49.418 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1228
17-03-17 23:09:49.418 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1228
17-03-17 23:09:49.418 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:09:49.418 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:09:49.418 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 23:09:49.418 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1228
17-03-17 23:09:49.418 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1228
17-03-17 23:09:49.428 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:09:49.428 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:09:49.428 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 23:09:49.608 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP 1421
17-03-17 23:09:49.608 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:09:49.608 -07 000000610 INF: FPGA: 'CAMDBLSNAP 468 468 225 225 29305 150' command took 2 ms to send, 1418 ms to get response, and 1428 ms overall
17-03-17 23:09:49.618 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:09:49.618 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91064453125, Z-Position -0.133345230022485. ------
17-03-17 23:09:49.618 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:09:49.618 -07 000000448 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13951 mm
17-03-17 23:09:49.618 -07 000000448 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:09:49.618 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:09:49.618 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 23:09:49.618 -07 000000623 INF: Y Motor: Moving to 60.7426 mm, started at 59.9106 mm, delta = 0.8320 mm
17-03-17 23:09:49.618 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 30475, sync = True, waitForSettling = False)
17-03-17 23:09:49.618 -07 000000486 INF: Z Motor: Moving to -0.139506 mm, started at -0.133345 mm, distance = -6.16 um
17-03-17 23:09:49.628 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:09:49.628 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:09:49.628 -07 000000627 INF: FPGA: Recv YRDPOS 122697
17-03-17 23:09:49.638 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:09:49.638 -07 000000623 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:09:49.638 -07 000000623 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:09:49.638 -07 000000623 INF: Y Motor: Moving 1331 steps2
17-03-17 23:09:49.638 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:09:49.648 -07 000000486 INF: FPGA: Xmit ZDACW 30475\n [Z Motor]
17-03-17 23:09:49.648 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 23:09:49.658 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:09:49.658 -07 000000486 INF: FPGA: 'ZDACW 30475' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 23:09:49.668 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:09:49.668 -07 000000576 INF: FPGA: Recv ZDACR 30475
17-03-17 23:09:49.678 -07 000000486 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:09:49.678 -07 000000486 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-17 23:09:49.818 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 23:09:49.818 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 23:09:49.818 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:09:49.818 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 23:09:49.818 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 23:09:49.818 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:09:49.828 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:09:49.828 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 23:09:49.828 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 23:09:49.828 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 23:09:49.838 -07 000000475 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:09:49.838 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 213 ms overall
17-03-17 23:09:50.028 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 23:09:50.028 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 23:09:50.068 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:09:50.068 -07 000000501 INF: FPGA: Recv YRDPOS 124380
17-03-17 23:09:50.078 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:09:50.078 -07 000000623 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:09:50.078 -07 000000623 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-17 23:09:50.078 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.832 mm, average velocity = 2.090 mm/sec
17-03-17 23:09:51.028 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:09:51.028 -07 000000429 INF: FPGA: Recv YRDPOS 124380
17-03-17 23:09:51.038 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:51.038 -07 000000623 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:09:51.058 -07 000000623 INF: Y Motor: After move to 60.742607, error = -0.010185, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:09:51.058 -07 000000623 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:09:51.058 -07 000000623 INF: Y Motor: Moved to 60.7324 after 1437 ms (table move)
17-03-17 23:09:51.068 -07 000000448 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139506 mm (DAC = 30475)
17-03-17 23:09:51.068 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:51.068 -07 000000478 INF: FPGA: Recv ZSGSRD 31006
17-03-17 23:09:51.078 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:51.078 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:51.078 -07 000000593 INF: FPGA: Recv ZSGSRD 31006
17-03-17 23:09:51.088 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:51.088 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:51.088 -07 000000547 INF: FPGA: Recv ZSGSRD 31009
17-03-17 23:09:51.098 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:51.098 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:51.098 -07 000000475 INF: FPGA: Recv ZSGSRD 31005
17-03-17 23:09:51.108 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:51.108 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:51.108 -07 000000623 INF: FPGA: Recv ZSGSRD 31009
17-03-17 23:09:51.118 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:51.118 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:51.118 -07 000000541 INF: FPGA: Recv ZSGSRD 31004
17-03-17 23:09:51.128 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:51.128 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:51.128 -07 000000576 INF: FPGA: Recv ZSGSRD 31000
17-03-17 23:09:51.138 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:51.138 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:51.138 -07 000000547 INF: FPGA: Recv ZSGSRD 31006
17-03-17 23:09:51.148 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:51.148 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:51.148 -07 000000415 INF: FPGA: Recv ZSGSRD 31004
17-03-17 23:09:51.158 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:51.158 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:51.158 -07 000000551 INF: FPGA: Recv ZSGSRD 31011
17-03-17 23:09:51.168 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:51.168 -07 000000448 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:09:51.168 -07 000000478 INF: FPGA: Recv ZPIEZORD 26879
17-03-17 23:09:51.178 -07 000000448 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:51.178 -07 000000448 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.5 V, since DAC is at 4.650 V. Piezo Error = -9.1 V.
17-03-17 23:09:51.178 -07 000000448 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.5 um, Read 10 ADC samples: Avg = 31006 (-138.7 uncal um), Error = 0.8 uncal um, Median = 31006 (-138.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 31000 (-138.7 uncal um), Max = 31011 (-138.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:09:51.178 -07 000000448 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31006, posNoise = 5, negNoise = 6
17-03-17 23:09:51.178 -07 000000448 INF: Z Motor: After move to -0.139506, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:09:51.178 -07 000000448 INF: Z Motor: Settle wait time = 1440 ms, measure time = 111 ms (allowed 150 ms), total time = 1551 ms
17-03-17 23:09:51.178 -07 000000448 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 23:09:51.218 -07 000000448 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms
17-03-17 23:09:51.218 -07 000000448 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:09:51.218 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:09:51.218 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:09:51.218 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:09:51.218 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:09:51.218 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:09:51.218 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:09:51.218 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:09:51.218 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:09:51.228 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:09:51.228 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:09:51.238 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 23:09:51.238 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 23:09:51.238 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:09:51.288 -07 000000415 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:09:51.488 -07 000000482 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:09:51.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:09:51.488 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:09:51.598 -07 000000561 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:09:51.598 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-17 23:09:51.598 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 351 ms to get response, and 355 ms overall
17-03-17 23:09:51.598 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) start.
17-03-17 23:09:51.718 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 23:09:51.718 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:09:51.728 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:09:51.728 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 238 ms.
17-03-17 23:09:51.798 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:09:51.798 -07 000000541 INF: Autofocus start
17-03-17 23:09:51.798 -07 000000541 INF: MeasureProfile start
17-03-17 23:09:51.798 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:09:51.808 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:09:51.808 -07 000000475 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:09:51.808 -07 000000541 INF: MeasureProfile done
17-03-17 23:09:51.808 -07 000000541 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 23:09:51.808 -07 000000541 INF: Autofocus finished
17-03-17 23:09:52.008 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:09:52.008 -07 000000475 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-17 23:09:52.008 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.732421875, Z-position -0.139512473678575. ----------
17-03-17 23:09:52.008 -07 000000610 INF: Cycle	72	Tile	2	Exposure Settings		A	468	G	225	T	225	C	468
17-03-17 23:09:52.018 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28970, sync = True, waitForSettling = True)
17-03-17 23:09:52.018 -07 000000610 INF: Z Motor: Moving to -0.132616 mm, started at -0.139512 mm, distance = 6.90 um
17-03-17 23:09:52.018 -07 000000610 INF: FPGA: Xmit ZDACW 28970\n [Z Motor]
17-03-17 23:09:52.018 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 23:09:52.028 -07 000000610 INF: FPGA: 'ZDACW 28970' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:09:52.028 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:09:52.028 -07 000000501 INF: FPGA: Recv ZDACR 28970
17-03-17 23:09:52.038 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:52.038 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:09:52.038 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:09:52.038 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 71. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1150, R2=1196, Total=2346. Warn if over 250 bubbles per interval.
17-03-17 23:09:52.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:52.188 -07 000000478 INF: FPGA: Recv ZSGSRD 29934
17-03-17 23:09:52.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:09:52.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:52.198 -07 000000501 INF: FPGA: Recv ZSGSRD 29932
17-03-17 23:09:52.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:52.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:52.208 -07 000000576 INF: FPGA: Recv ZSGSRD 29932
17-03-17 23:09:52.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:52.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:52.218 -07 000000561 INF: FPGA: Recv ZSGSRD 29926
17-03-17 23:09:52.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:52.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:52.228 -07 000000462 INF: FPGA: Recv ZSGSRD 29935
17-03-17 23:09:52.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:52.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:52.238 -07 000000482 INF: FPGA: Recv ZSGSRD 29932
17-03-17 23:09:52.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:52.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:52.248 -07 000000593 INF: FPGA: Recv ZSGSRD 29932
17-03-17 23:09:52.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:52.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:52.258 -07 000000486 INF: FPGA: Recv ZSGSRD 29938
17-03-17 23:09:52.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:52.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:52.268 -07 000000429 INF: FPGA: Recv ZSGSRD 29935
17-03-17 23:09:52.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:52.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:52.278 -07 000000593 INF: FPGA: Recv ZSGSRD 29932
17-03-17 23:09:52.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:52.288 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:09:52.288 -07 000000502 INF: FPGA: Recv ZPIEZORD 25478
17-03-17 23:09:52.298 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:52.298 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.421 V. Piezo Error = -9.8 V.
17-03-17 23:09:52.298 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.6 um, Read 10 ADC samples: Avg = 29933 (-131.8 uncal um), Error = 0.8 uncal um, Median = 29932 (-131.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29926 (-131.8 uncal um), Max = 29938 (-131.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 23:09:52.298 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29933, posNoise = 5, negNoise = 7
17-03-17 23:09:52.298 -07 000000610 INF: Z Motor: After move to -0.132616, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:09:52.298 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 23:09:52.298 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:09:52.298 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:09:52.298 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:09:52.298 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:09:52.298 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:09:52.298 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:09:52.298 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:09:52.298 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:09:52.298 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:09:52.298 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:09:52.298 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:09:52.298 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:09:52.298 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 23:09:52.308 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:09:52.308 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:09:52.308 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:09:52.318 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 23:09:52.318 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 23:09:52.318 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 23:09:52.318 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:09:52.318 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 468 468 225 225 29147 150\n [Camera]
17-03-17 23:09:52.518 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:09:52.988 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 660
17-03-17 23:09:52.988 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 660
17-03-17 23:09:52.988 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:09:52.998 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 660
17-03-17 23:09:52.998 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 660
17-03-17 23:09:52.998 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:09:52.998 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:09:52.998 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 23:09:52.998 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:09:52.998 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 23:09:53.028 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 72, FrontChillerTemperature: 3.990831,
17-03-17 23:09:53.188 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29147 853
17-03-17 23:09:53.328 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1003
17-03-17 23:09:53.388 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 23:09:53.388 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 23:09:53.388 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:09:53.388 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:09:53.388 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 23:09:53.398 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 23:09:53.398 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 23:09:53.398 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:09:53.398 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:09:53.408 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 23:09:53.558 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1228
17-03-17 23:09:53.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1228
17-03-17 23:09:53.558 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:09:53.558 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1228
17-03-17 23:09:53.558 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1228
17-03-17 23:09:53.558 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:09:53.678 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:09:53.678 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-17 23:09:53.678 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:09:53.678 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-17 23:09:53.748 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1421
17-03-17 23:09:53.748 -07 000000623 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:09:53.748 -07 000000610 INF: FPGA: 'CAMDBLSNAP 468 468 225 225 29147 150' command took 3 ms to send, 1417 ms to get response, and 1429 ms overall
17-03-17 23:09:53.748 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:09:53.748 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.732421875, Z-Position -0.132619294050466. ------
17-03-17 23:09:53.758 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:09:53.758 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13935 mm
17-03-17 23:09:53.758 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:09:53.758 -07 000000448 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 23:09:53.758 -07 000000448 INF: Y Motor: Moving to 61.5726 mm, started at 60.7324 mm, delta = 0.8402 mm
17-03-17 23:09:53.758 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 30442, sync = True, waitForSettling = False)
17-03-17 23:09:53.758 -07 000000382 INF: Z Motor: Moving to -0.139355 mm, started at -0.132619 mm, distance = -6.74 um
17-03-17 23:09:53.758 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:09:53.768 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:09:53.768 -07 000000382 INF: FPGA: Xmit ZDACW 30442\n [Z Motor]
17-03-17 23:09:53.768 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 23:09:53.778 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:09:53.778 -07 000000382 INF: FPGA: 'ZDACW 30442' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 23:09:53.778 -07 000000478 INF: FPGA: Recv YRDPOS 124381
17-03-17 23:09:53.788 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 23:09:53.788 -07 000000448 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:09:53.788 -07 000000627 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:09:53.788 -07 000000448 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:09:53.788 -07 000000448 INF: Y Motor: Moving 1344 steps-21
17-03-17 23:09:53.798 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:09:53.798 -07 000000547 INF: FPGA: Recv ZDACR 30442
17-03-17 23:09:53.808 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:09:53.808 -07 000000382 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-17 23:09:53.808 -07 000000448 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:09:53.988 -07 000000551 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:09:53.988 -07 000000627 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 23:09:54.078 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 23:09:54.078 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 23:09:54.078 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:09:54.078 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 23:09:54.078 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 23:09:54.078 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:09:54.078 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:09:54.078 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:09:54.078 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 522 ms.
17-03-17 23:09:54.088 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 524 ms.
17-03-17 23:09:54.178 -07 000000482 INF: FPGA: Recv YMVTILE
17-03-17 23:09:54.178 -07 000000448 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 23:09:54.218 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:09:54.228 -07 000000623 INF: FPGA: Recv YRDPOS 126082
17-03-17 23:09:54.228 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 23:09:54.228 -07 000000448 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:09:54.228 -07 000000448 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 23:09:54.228 -07 000000448 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.840 mm, average velocity = 2.138 mm/sec
17-03-17 23:09:55.178 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:09:55.178 -07 000000576 INF: FPGA: Recv YRDPOS 126082
17-03-17 23:09:55.188 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:09:55.188 -07 000000448 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:09:55.208 -07 000000448 INF: Y Motor: After move to 61.572609, error = -0.009132, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:09:55.208 -07 000000448 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:09:55.208 -07 000000448 INF: Y Motor: Moved to 61.5635 after 1450 ms (table move)
17-03-17 23:09:55.218 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139355 mm (DAC = 30442)
17-03-17 23:09:55.218 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:55.218 -07 000000623 INF: FPGA: Recv ZSGSRD 30984
17-03-17 23:09:55.228 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:55.228 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:55.228 -07 000000576 INF: FPGA: Recv ZSGSRD 30980
17-03-17 23:09:55.238 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:09:55.238 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:55.238 -07 000000429 INF: FPGA: Recv ZSGSRD 30987
17-03-17 23:09:55.248 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:55.248 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:55.248 -07 000000623 INF: FPGA: Recv ZSGSRD 30992
17-03-17 23:09:55.258 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:55.258 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:55.258 -07 000000478 INF: FPGA: Recv ZSGSRD 30982
17-03-17 23:09:55.268 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:55.268 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:55.268 -07 000000382 INF: FPGA: Recv ZSGSRD 30983
17-03-17 23:09:55.278 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:55.278 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:55.278 -07 000000547 INF: FPGA: Recv ZSGSRD 30974
17-03-17 23:09:55.288 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:55.288 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:55.288 -07 000000541 INF: FPGA: Recv ZSGSRD 30982
17-03-17 23:09:55.298 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:55.298 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:55.298 -07 000000547 INF: FPGA: Recv ZSGSRD 30984
17-03-17 23:09:55.308 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:55.308 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:55.308 -07 000000475 INF: FPGA: Recv ZSGSRD 30980
17-03-17 23:09:55.318 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:55.318 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:09:55.318 -07 000000501 INF: FPGA: Recv ZPIEZORD 26915
17-03-17 23:09:55.328 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:55.328 -07 000000462 INF: Z Motor: Piezo is near 37.5 V (nominally 0 to 100 V), expect near 46.5 V, since DAC is at 4.645 V. Piezo Error = -9.0 V.
17-03-17 23:09:55.328 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.4 um, Read 10 ADC samples: Avg = 30983 (-138.6 uncal um), Error = 0.8 uncal um, Median = 30982 (-138.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30974 (-138.5 uncal um), Max = 30992 (-138.6 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 23:09:55.328 -07 000000462 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30983, posNoise = 9, negNoise = 9
17-03-17 23:09:55.328 -07 000000462 INF: Z Motor: After move to -0.139355, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:09:55.328 -07 000000462 INF: Z Motor: Settle wait time = 1454 ms, measure time = 110 ms (allowed 150 ms), total time = 1564 ms
17-03-17 23:09:55.328 -07 000000462 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 23:09:55.368 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1606 ms
17-03-17 23:09:55.368 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:09:55.368 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:09:55.368 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:09:55.368 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:09:55.368 -07 000000409 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:09:55.368 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:09:55.368 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:09:55.368 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:09:55.368 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:09:55.378 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:09:55.378 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:09:55.378 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 23:09:55.378 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 23:09:55.388 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:09:55.428 -07 000000482 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:09:55.628 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:09:55.628 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:09:55.628 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:09:55.628 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-17 23:09:55.668 -07 000000561 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:09:55.668 -07 000000482 INF: FPGA: Recv CAMSNAP
17-03-17 23:09:55.668 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 274 ms to get response, and 284 ms overall
17-03-17 23:09:55.748 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 23:09:55.748 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:09:55.748 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:09:55.748 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-17 23:09:55.768 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:09:55.768 -07 000000462 INF: Autofocus start
17-03-17 23:09:55.768 -07 000000462 INF: MeasureProfile start
17-03-17 23:09:55.768 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:09:55.778 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:09:55.778 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:09:55.778 -07 000000462 INF: MeasureProfile done
17-03-17 23:09:55.778 -07 000000462 INF: X=16  Z correction [um]=0.0530179
17-03-17 23:09:55.778 -07 000000462 INF: Autofocus finished
17-03-17 23:09:55.978 -07 000000448 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:09:55.978 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:09:55.978 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.5634765625, Z-position -0.139364716799315. ----------
17-03-17 23:09:55.988 -07 000000610 INF: Cycle	72	Tile	3	Exposure Settings		A	468	G	225	T	225	C	468
17-03-17 23:09:55.988 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28966, sync = True, waitForSettling = True)
17-03-17 23:09:55.988 -07 000000610 INF: Z Motor: Moving to -0.132598 mm, started at -0.139365 mm, distance = 6.77 um
17-03-17 23:09:55.988 -07 000000610 INF: FPGA: Xmit ZDACW 28966\n [Z Motor]
17-03-17 23:09:55.988 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 23:09:55.998 -07 000000610 INF: FPGA: 'ZDACW 28966' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:09:55.998 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:09:55.998 -07 000000429 INF: FPGA: Recv ZDACR 28966
17-03-17 23:09:56.008 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:56.008 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:09:56.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:56.158 -07 000000448 INF: FPGA: Recv ZSGSRD 29924
17-03-17 23:09:56.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:09:56.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:56.168 -07 000000551 INF: FPGA: Recv ZSGSRD 29932
17-03-17 23:09:56.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:56.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:56.178 -07 000000502 INF: FPGA: Recv ZSGSRD 29934
17-03-17 23:09:56.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:56.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:56.188 -07 000000462 INF: FPGA: Recv ZSGSRD 29930
17-03-17 23:09:56.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:56.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:56.198 -07 000000482 INF: FPGA: Recv ZSGSRD 29933
17-03-17 23:09:56.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:56.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:56.208 -07 000000415 INF: FPGA: Recv ZSGSRD 29932
17-03-17 23:09:56.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:56.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:56.218 -07 000000462 INF: FPGA: Recv ZSGSRD 29931
17-03-17 23:09:56.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:56.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:56.228 -07 000000429 INF: FPGA: Recv ZSGSRD 29932
17-03-17 23:09:56.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:56.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:56.238 -07 000000627 INF: FPGA: Recv ZSGSRD 29929
17-03-17 23:09:56.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:56.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:56.248 -07 000000618 INF: FPGA: Recv ZSGSRD 29936
17-03-17 23:09:56.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:56.258 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:09:56.258 -07 000000478 INF: FPGA: Recv ZPIEZORD 25552
17-03-17 23:09:56.268 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:56.268 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.420 V. Piezo Error = -9.6 V.
17-03-17 23:09:56.268 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.6 um, Read 10 ADC samples: Avg = 29931 (-131.8 uncal um), Error = 0.8 uncal um, Median = 29932 (-131.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29924 (-131.8 uncal um), Max = 29936 (-131.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 23:09:56.268 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29931, posNoise = 5, negNoise = 7
17-03-17 23:09:56.268 -07 000000610 INF: Z Motor: After move to -0.132598, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:09:56.268 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 23:09:56.268 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:09:56.268 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:09:56.268 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:09:56.268 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:09:56.268 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:09:56.268 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:09:56.268 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:09:56.268 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:09:56.268 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:09:56.268 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:09:56.268 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:09:56.268 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:09:56.278 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 23:09:56.278 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:09:56.278 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:09:56.278 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:09:56.278 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 23:09:56.288 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 23:09:56.288 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 23:09:56.288 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 23:09:56.288 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 468 468 225 225 29143 150\n [Camera]
17-03-17 23:09:56.488 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:09:56.958 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 660
17-03-17 23:09:56.958 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 660
17-03-17 23:09:56.958 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:09:56.958 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 660
17-03-17 23:09:56.958 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 660
17-03-17 23:09:56.958 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:09:56.958 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:09:56.958 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 23:09:56.958 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:09:56.958 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 23:09:57.038 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:09:57.048 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 71. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1150, R2=1196, Total=2346. Warn if over 250 bubbles per interval.
17-03-17 23:09:57.148 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29143 853
17-03-17 23:09:57.298 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1003
17-03-17 23:09:57.358 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 23:09:57.358 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 23:09:57.358 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:09:57.358 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 23:09:57.358 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 23:09:57.358 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:09:57.358 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:09:57.358 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 23:09:57.358 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:09:57.368 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 23:09:57.518 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1228
17-03-17 23:09:57.518 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1228
17-03-17 23:09:57.518 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:09:57.518 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:09:57.518 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 23:09:57.528 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1228
17-03-17 23:09:57.528 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1228
17-03-17 23:09:57.528 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:09:57.528 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:09:57.528 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 23:09:57.708 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1421
17-03-17 23:09:57.718 -07 000000475 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:09:57.718 -07 000000610 INF: FPGA: 'CAMDBLSNAP 468 468 225 225 29143 150' command took 2 ms to send, 1420 ms to get response, and 1428 ms overall
17-03-17 23:09:57.718 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:09:57.718 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.5634765625, Z-Position -0.132606445626182. ------
17-03-17 23:09:57.718 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:09:57.718 -07 000000415 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13902 mm
17-03-17 23:09:57.718 -07 000000415 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:09:57.718 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:09:57.718 -07 000000482 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 23:09:57.728 -07 000000482 INF: Y Motor: Moving to 62.4026 mm, started at 61.5635 mm, delta = 0.8391 mm
17-03-17 23:09:57.728 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:09:57.728 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 30370, sync = True, waitForSettling = False)
17-03-17 23:09:57.728 -07 000000502 INF: Z Motor: Moving to -0.139025 mm, started at -0.132606 mm, distance = -6.42 um
17-03-17 23:09:57.728 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:09:57.728 -07 000000541 INF: FPGA: Recv YRDPOS 126082
17-03-17 23:09:57.738 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:57.738 -07 000000482 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:09:57.738 -07 000000482 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:09:57.738 -07 000000482 INF: Y Motor: Moving 1343 steps-19
17-03-17 23:09:57.738 -07 000000627 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:09:57.748 -07 000000502 INF: FPGA: Xmit ZDACW 30370\n [Z Motor]
17-03-17 23:09:57.748 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 23:09:57.758 -07 000000482 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:09:57.758 -07 000000502 INF: FPGA: 'ZDACW 30370' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:09:57.768 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:09:57.768 -07 000000593 INF: FPGA: Recv ZDACR 30370
17-03-17 23:09:57.778 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:09:57.778 -07 000000502 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 23:09:57.918 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 23:09:57.918 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 23:09:57.918 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:09:57.918 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 23:09:57.918 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 23:09:57.918 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:09:57.918 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:09:57.928 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 23:09:57.928 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 23:09:57.928 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 23:09:57.938 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:09:57.938 -07 000000627 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 23:09:58.128 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-17 23:09:58.128 -07 000000482 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 23:09:58.168 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:09:58.178 -07 000000475 INF: FPGA: Recv YRDPOS 127785
17-03-17 23:09:58.178 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 23:09:58.178 -07 000000482 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:09:58.178 -07 000000482 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 23:09:58.178 -07 000000482 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.114 mm/sec
17-03-17 23:09:58.388 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 72, FrontChillerTemperature: 4.001704,
17-03-17 23:09:59.128 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:09:59.128 -07 000000448 INF: FPGA: Recv YRDPOS 127785
17-03-17 23:09:59.138 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:59.138 -07 000000482 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:09:59.158 -07 000000482 INF: Y Motor: After move to 62.402607, error = -0.007587, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:09:59.158 -07 000000482 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:09:59.158 -07 000000482 INF: Y Motor: Moved to 62.3950 after 1435 ms (table move)
17-03-17 23:09:59.158 -07 000000415 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139025 mm (DAC = 30370)
17-03-17 23:09:59.158 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:59.168 -07 000000486 INF: FPGA: Recv ZSGSRD 30918
17-03-17 23:09:59.168 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 4 ms to get response, and 5 ms overall
17-03-17 23:09:59.168 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:59.168 -07 000000561 INF: FPGA: Recv ZSGSRD 30946
17-03-17 23:09:59.178 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:09:59.178 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:59.178 -07 000000501 INF: FPGA: Recv ZSGSRD 30928
17-03-17 23:09:59.188 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:59.188 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:59.188 -07 000000475 INF: FPGA: Recv ZSGSRD 30936
17-03-17 23:09:59.198 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:59.198 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:59.198 -07 000000501 INF: FPGA: Recv ZSGSRD 30937
17-03-17 23:09:59.208 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:59.208 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:59.208 -07 000000618 INF: FPGA: Recv ZSGSRD 30939
17-03-17 23:09:59.218 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:59.218 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:59.218 -07 000000475 INF: FPGA: Recv ZSGSRD 30920
17-03-17 23:09:59.228 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:59.228 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:59.228 -07 000000541 INF: FPGA: Recv ZSGSRD 30923
17-03-17 23:09:59.238 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:59.238 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:59.238 -07 000000551 INF: FPGA: Recv ZSGSRD 30940
17-03-17 23:09:59.248 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:59.248 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:09:59.248 -07 000000561 INF: FPGA: Recv ZSGSRD 30932
17-03-17 23:09:59.258 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:59.258 -07 000000415 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:09:59.258 -07 000000486 INF: FPGA: Recv ZPIEZORD 26847
17-03-17 23:09:59.268 -07 000000415 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:59.268 -07 000000415 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.634 V. Piezo Error = -9.0 V.
17-03-17 23:09:59.268 -07 000000415 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.0 um, Read 10 ADC samples: Avg = 30932 (-138.2 uncal um), Error = 0.8 uncal um, Median = 30934 (-138.2 uncal um), StdDev = 9 (0.1 uncal um), Range = 28 (0.2 uncal um), Min = 30918 (-138.1 uncal um), Max = 30946 (-138.3 uncal um), Pos Noise = 14 (0.1 uncal um), Neg Noise = 14 (0.1 uncal um)
17-03-17 23:09:59.268 -07 000000415 INF: Z Motor: ADC noise = 14, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30932, posNoise = 14, negNoise = 14
17-03-17 23:09:59.268 -07 000000415 INF: Z Motor: After move to -0.139025, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:09:59.268 -07 000000415 INF: Z Motor: Settle wait time = 1438 ms, measure time = 104 ms (allowed 150 ms), total time = 1542 ms
17-03-17 23:09:59.268 -07 000000415 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 23:09:59.318 -07 000000415 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1594 ms
17-03-17 23:09:59.318 -07 000000415 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:09:59.318 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:09:59.318 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:09:59.318 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:09:59.318 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:09:59.318 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:09:59.318 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:09:59.318 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:09:59.318 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:09:59.328 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:09:59.328 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:09:59.338 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 23:09:59.338 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 23:09:59.338 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:09:59.388 -07 000000409 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:09:59.588 -07 000000475 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:09:59.588 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:09:59.588 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:09:59.588 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 658880552, 0x0, 559484976) start.
17-03-17 23:09:59.628 -07 000000627 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:09:59.628 -07 000000409 INF: FPGA: Recv CAMSNAP
17-03-17 23:09:59.628 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 23:09:59.708 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 658880552, 0x0, 559484976) end. Duration was 123 ms.
17-03-17 23:09:59.708 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:09:59.708 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:09:59.708 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 126 ms.
17-03-17 23:09:59.728 -07 000000623 INF: Autofocus start
17-03-17 23:09:59.728 -07 000000623 INF: MeasureProfile start
17-03-17 23:09:59.728 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:09:59.728 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:09:59.738 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:09:59.738 -07 000000486 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:09:59.748 -07 000000623 INF: MeasureProfile done
17-03-17 23:09:59.748 -07 000000623 INF: X=0  Z correction [um]=-0.02394831
17-03-17 23:09:59.748 -07 000000623 INF: Autofocus finished
17-03-17 23:09:59.938 -07 000000593 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:09:59.938 -07 000000486 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 202 ms overall
17-03-17 23:09:59.938 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39501953125, Z-position -0.139037081980085. ----------
17-03-17 23:09:59.938 -07 000000610 INF: Cycle	72	Tile	4	Exposure Settings		A	468	G	225	T	225	C	468
17-03-17 23:09:59.948 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28877, sync = True, waitForSettling = True)
17-03-17 23:09:59.948 -07 000000610 INF: Z Motor: Moving to -0.132190 mm, started at -0.139037 mm, distance = 6.85 um
17-03-17 23:09:59.948 -07 000000610 INF: FPGA: Xmit ZDACW 28877\n [Z Motor]
17-03-17 23:09:59.948 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 23:09:59.958 -07 000000610 INF: FPGA: 'ZDACW 28877' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:59.958 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:09:59.958 -07 000000593 INF: FPGA: Recv ZDACR 28877
17-03-17 23:09:59.968 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:09:59.968 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:10:00.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:00.118 -07 000000576 INF: FPGA: Recv ZSGSRD 29869
17-03-17 23:10:00.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:10:00.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:00.128 -07 000000618 INF: FPGA: Recv ZSGSRD 29869
17-03-17 23:10:00.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 2 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:00.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:00.138 -07 000000478 INF: FPGA: Recv ZSGSRD 29867
17-03-17 23:10:00.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:00.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:00.148 -07 000000618 INF: FPGA: Recv ZSGSRD 29861
17-03-17 23:10:00.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:00.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:00.158 -07 000000561 INF: FPGA: Recv ZSGSRD 29867
17-03-17 23:10:00.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:00.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:00.168 -07 000000429 INF: FPGA: Recv ZSGSRD 29865
17-03-17 23:10:00.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:00.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:00.178 -07 000000627 INF: FPGA: Recv ZSGSRD 29869
17-03-17 23:10:00.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:00.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:00.188 -07 000000482 INF: FPGA: Recv ZSGSRD 29866
17-03-17 23:10:00.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:00.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:00.198 -07 000000547 INF: FPGA: Recv ZSGSRD 29866
17-03-17 23:10:00.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:00.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:00.208 -07 000000486 INF: FPGA: Recv ZSGSRD 29867
17-03-17 23:10:00.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:00.218 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:10:00.218 -07 000000429 INF: FPGA: Recv ZPIEZORD 25439
17-03-17 23:10:00.228 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:00.228 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.406 V. Piezo Error = -9.7 V.
17-03-17 23:10:00.228 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.2 um, Read 10 ADC samples: Avg = 29867 (-131.4 uncal um), Error = 0.8 uncal um, Median = 29867 (-131.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29861 (-131.4 uncal um), Max = 29869 (-131.4 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:10:00.228 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29867, posNoise = 2, negNoise = 6
17-03-17 23:10:00.228 -07 000000610 INF: Z Motor: After move to -0.132190, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:10:00.228 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 23:10:00.228 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:10:00.228 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:10:00.228 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:10:00.228 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:10:00.228 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:10:00.228 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:10:00.228 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:10:00.228 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:10:00.228 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:10:00.228 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:10:00.228 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:10:00.228 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:10:00.238 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:10:00.238 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:10:00.238 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:10:00.238 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:10:00.238 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 23:10:00.248 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 23:10:00.248 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 23:10:00.248 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 23:10:00.248 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 468 468 225 225 29054 150\n [Camera]
17-03-17 23:10:00.448 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:10:00.918 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 660
17-03-17 23:10:00.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 660
17-03-17 23:10:00.918 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:10:00.918 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:10:00.918 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 23:10:00.918 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 660
17-03-17 23:10:00.918 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 660
17-03-17 23:10:00.918 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:10:00.918 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:10:00.918 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 23:10:01.108 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29054 853
17-03-17 23:10:01.258 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1003
17-03-17 23:10:01.298 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 23:10:01.298 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 23:10:01.298 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:10:01.298 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 23:10:01.298 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 23:10:01.298 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:10:01.298 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:10:01.298 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:10:01.298 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 23:10:01.308 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 23:10:01.478 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1228
17-03-17 23:10:01.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1228
17-03-17 23:10:01.488 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:10:01.488 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:10:01.488 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 23:10:01.488 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1228
17-03-17 23:10:01.488 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1228
17-03-17 23:10:01.488 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:10:01.488 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:10:01.488 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 23:10:01.678 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1421
17-03-17 23:10:01.678 -07 000000541 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:10:01.678 -07 000000610 INF: FPGA: 'CAMDBLSNAP 468 468 225 225 29054 150' command took 2 ms to send, 1421 ms to get response, and 1428 ms overall
17-03-17 23:10:01.678 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:10:01.678 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39501953125, Z-Position -0.13219529604911. ------
17-03-17 23:10:01.678 -07 000000627 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13895 mm
17-03-17 23:10:01.678 -07 000000627 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:10:01.678 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:10:01.688 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 23:10:01.688 -07 000000502 INF: Y Motor: Moving to 63.2326 mm, started at 62.3950 mm, delta = 0.8376 mm
17-03-17 23:10:01.688 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:10:01.688 -07 000000475 INF: Z Motor: Entering MoveAbsStepped (DAC = 30353, sync = True, waitForSettling = False)
17-03-17 23:10:01.688 -07 000000475 INF: Z Motor: Moving to -0.138947 mm, started at -0.132195 mm, distance = -6.75 um
17-03-17 23:10:01.688 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:10:01.688 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 23:10:01.688 -07 000000501 INF: FPGA: Recv YRDPOS 127785
17-03-17 23:10:01.698 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:01.698 -07 000000502 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:10:01.698 -07 000000502 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:10:01.698 -07 000000502 INF: Y Motor: Moving 1340 steps-16
17-03-17 23:10:01.698 -07 000000551 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:10:01.708 -07 000000475 INF: FPGA: Xmit ZDACW 30353\n [Z Motor]
17-03-17 23:10:01.708 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 23:10:01.718 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:10:01.718 -07 000000475 INF: FPGA: 'ZDACW 30353' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:10:01.728 -07 000000475 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:10:01.728 -07 000000618 INF: FPGA: Recv ZDACR 30353
17-03-17 23:10:01.738 -07 000000475 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:10:01.738 -07 000000475 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 23:10:01.878 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 23:10:01.878 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 23:10:01.878 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:10:01.878 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 390 ms.
17-03-17 23:10:01.878 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 23:10:01.878 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:10:01.878 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:10:01.888 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 23:10:01.888 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 23:10:01.888 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 23:10:01.898 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:10:01.898 -07 000000551 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 211 ms overall
17-03-17 23:10:02.038 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:10:02.038 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 71. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1150, R2=1196, Total=2346. Warn if over 250 bubbles per interval.
17-03-17 23:10:02.088 -07 000000593 INF: FPGA: Recv YMVTILE
17-03-17 23:10:02.088 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-17 23:10:02.128 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:10:02.138 -07 000000415 INF: FPGA: Recv YRDPOS 129481
17-03-17 23:10:02.138 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 23:10:02.138 -07 000000502 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:10:02.138 -07 000000502 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 23:10:02.138 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.838 mm, average velocity = 2.104 mm/sec
17-03-17 23:10:03.088 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:10:03.088 -07 000000561 INF: FPGA: Recv YRDPOS 129482
17-03-17 23:10:03.098 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:10:03.098 -07 000000502 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:10:03.128 -07 000000502 INF: Y Motor: After move to 63.232609, error = -0.008976, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:10:03.128 -07 000000502 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 23:10:03.128 -07 000000502 INF: Y Motor: Moved to 63.2236 after 1441 ms (table move)
17-03-17 23:10:03.128 -07 000000627 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138947 mm (DAC = 30353)
17-03-17 23:10:03.128 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:03.138 -07 000000541 INF: FPGA: Recv ZSGSRD 30921
17-03-17 23:10:03.138 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:10:03.138 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:03.138 -07 000000623 INF: FPGA: Recv ZSGSRD 30917
17-03-17 23:10:03.148 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:03.148 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:03.148 -07 000000541 INF: FPGA: Recv ZSGSRD 30920
17-03-17 23:10:03.158 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:03.158 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:03.158 -07 000000576 INF: FPGA: Recv ZSGSRD 30921
17-03-17 23:10:03.168 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:03.168 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:03.168 -07 000000448 INF: FPGA: Recv ZSGSRD 30922
17-03-17 23:10:03.178 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:03.178 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:03.178 -07 000000541 INF: FPGA: Recv ZSGSRD 30921
17-03-17 23:10:03.188 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:03.188 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:03.188 -07 000000551 INF: FPGA: Recv ZSGSRD 30916
17-03-17 23:10:03.198 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:03.198 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:03.198 -07 000000593 INF: FPGA: Recv ZSGSRD 30910
17-03-17 23:10:03.208 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:03.208 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:03.208 -07 000000478 INF: FPGA: Recv ZSGSRD 30916
17-03-17 23:10:03.218 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:03.218 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:03.218 -07 000000415 INF: FPGA: Recv ZSGSRD 30921
17-03-17 23:10:03.228 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:03.228 -07 000000627 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:10:03.228 -07 000000475 INF: FPGA: Recv ZPIEZORD 26862
17-03-17 23:10:03.238 -07 000000627 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:03.238 -07 000000627 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.632 V. Piezo Error = -8.9 V.
17-03-17 23:10:03.238 -07 000000627 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.9 um, Read 10 ADC samples: Avg = 30918 (-138.1 uncal um), Error = 0.8 uncal um, Median = 30920 (-138.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30910 (-138.1 uncal um), Max = 30922 (-138.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 23:10:03.238 -07 000000627 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30918, posNoise = 4, negNoise = 8
17-03-17 23:10:03.238 -07 000000627 INF: Z Motor: After move to -0.138947, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:10:03.238 -07 000000627 INF: Z Motor: Settle wait time = 1446 ms, measure time = 103 ms (allowed 150 ms), total time = 1549 ms
17-03-17 23:10:03.238 -07 000000627 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 23:10:03.288 -07 000000627 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1602 ms
17-03-17 23:10:03.288 -07 000000627 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:10:03.288 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:10:03.288 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:10:03.288 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:10:03.288 -07 000000409 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:10:03.288 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:10:03.288 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:10:03.288 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:10:03.288 -07 000000409 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:10:03.298 -07 000000409 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 23:10:03.298 -07 000000409 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:10:03.298 -07 000000409 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 23:10:03.298 -07 000000409 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 23:10:03.308 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:10:03.348 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:10:03.548 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:10:03.548 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:10:03.548 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:10:03.548 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) start.
17-03-17 23:10:03.588 -07 000000547 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:10:03.588 -07 000000551 INF: FPGA: Recv CAMSNAP
17-03-17 23:10:03.588 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 23:10:03.668 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 23:10:03.668 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:10:03.668 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 23:10:03.668 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 23:10:03.688 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:10:03.688 -07 000000448 INF: Autofocus start
17-03-17 23:10:03.688 -07 000000448 INF: MeasureProfile start
17-03-17 23:10:03.688 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:10:03.698 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:10:03.698 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:10:03.698 -07 000000448 INF: MeasureProfile done
17-03-17 23:10:03.698 -07 000000448 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 23:10:03.698 -07 000000448 INF: Autofocus finished
17-03-17 23:10:03.768 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 72, FrontChillerTemperature: 3.996267,
17-03-17 23:10:03.898 -07 000000448 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:10:03.898 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:10:03.898 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.2236328125, Z-position -0.1389471430101. ----------
17-03-17 23:10:03.898 -07 000000610 INF: Cycle	72	Tile	5	Exposure Settings		A	468	G	225	T	225	C	468
17-03-17 23:10:03.908 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28847, sync = True, waitForSettling = True)
17-03-17 23:10:03.908 -07 000000610 INF: Z Motor: Moving to -0.132053 mm, started at -0.138947 mm, distance = 6.89 um
17-03-17 23:10:03.908 -07 000000610 INF: FPGA: Xmit ZDACW 28847\n [Z Motor]
17-03-17 23:10:03.908 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 23:10:03.918 -07 000000610 INF: FPGA: 'ZDACW 28847' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:10:03.918 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:10:03.918 -07 000000382 INF: FPGA: Recv ZDACR 28847
17-03-17 23:10:03.928 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:03.928 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:10:04.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:04.078 -07 000000541 INF: FPGA: Recv ZSGSRD 29847
17-03-17 23:10:04.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:10:04.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:04.098 -07 000000551 INF: FPGA: Recv ZSGSRD 29846
17-03-17 23:10:04.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:10:04.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:04.128 -07 000000551 INF: FPGA: Recv ZSGSRD 29846
17-03-17 23:10:04.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:10:04.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:04.138 -07 000000618 INF: FPGA: Recv ZSGSRD 29846
17-03-17 23:10:04.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:04.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:04.158 -07 000000627 INF: FPGA: Recv ZSGSRD 29845
17-03-17 23:10:04.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:10:04.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:04.168 -07 000000478 INF: FPGA: Recv ZSGSRD 29845
17-03-17 23:10:04.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:04.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:04.178 -07 000000502 INF: FPGA: Recv ZSGSRD 29847
17-03-17 23:10:04.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:04.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:04.188 -07 000000409 INF: FPGA: Recv ZSGSRD 29840
17-03-17 23:10:04.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:04.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:04.198 -07 000000382 INF: FPGA: Recv ZSGSRD 29838
17-03-17 23:10:04.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:04.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:04.208 -07 000000576 INF: FPGA: Recv ZSGSRD 29854
17-03-17 23:10:04.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:04.218 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:10:04.218 -07 000000382 INF: FPGA: Recv ZPIEZORD 25467
17-03-17 23:10:04.228 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:04.228 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.402 V. Piezo Error = -9.6 V.
17-03-17 23:10:04.228 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.1 um, Read 10 ADC samples: Avg = 29845 (-131.3 uncal um), Error = 0.8 uncal um, Median = 29846 (-131.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29838 (-131.2 uncal um), Max = 29854 (-131.3 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 23:10:04.228 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29845, posNoise = 9, negNoise = 7
17-03-17 23:10:04.228 -07 000000610 INF: Z Motor: After move to -0.132053, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:10:04.228 -07 000000610 INF: Z Motor: MoveAbsStepped took 319 ms)
17-03-17 23:10:04.228 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:10:04.228 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:10:04.228 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:10:04.228 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:10:04.228 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:10:04.228 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:10:04.228 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:10:04.228 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:10:04.238 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:10:04.238 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:10:04.238 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:10:04.238 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:10:04.238 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 23:10:04.238 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:10:04.238 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:10:04.238 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:10:04.248 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 23:10:04.248 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 23:10:04.248 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-17 23:10:04.248 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 23:10:04.248 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 468 468 225 225 29024 150\n [Camera]
17-03-17 23:10:04.448 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:10:04.918 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 660
17-03-17 23:10:04.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 660
17-03-17 23:10:04.918 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:10:04.918 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:10:04.918 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 23:10:04.918 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 660
17-03-17 23:10:04.918 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 660
17-03-17 23:10:04.928 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:10:04.928 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:10:04.928 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 23:10:05.108 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29024 853
17-03-17 23:10:05.258 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1003
17-03-17 23:10:05.318 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 23:10:05.318 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 23:10:05.318 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:10:05.318 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:10:05.318 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 23:10:05.318 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 23:10:05.318 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:10:05.318 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 23:10:05.328 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:10:05.328 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 23:10:05.488 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1228
17-03-17 23:10:05.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1228
17-03-17 23:10:05.488 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:10:05.488 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:10:05.488 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 23:10:05.488 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1228
17-03-17 23:10:05.488 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1228
17-03-17 23:10:05.488 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:10:05.488 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:10:05.488 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 23:10:05.678 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1421
17-03-17 23:10:05.678 -07 000000547 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:10:05.678 -07 000000610 INF: FPGA: 'CAMDBLSNAP 468 468 225 225 29024 150' command took 2 ms to send, 1416 ms to get response, and 1428 ms overall
17-03-17 23:10:05.678 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:10:05.678 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.2236328125, Z-Position -0.132053963381991. ------
17-03-17 23:10:05.688 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:10:05.688 -07 000000593 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13852 mm
17-03-17 23:10:05.688 -07 000000593 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:10:05.688 -07 000000409 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:10:05.688 -07 000000415 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 23:10:05.688 -07 000000415 INF: Y Motor: Moving to 64.0626 mm, started at 63.2236 mm, delta = 0.8390 mm
17-03-17 23:10:05.688 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 30259, sync = True, waitForSettling = False)
17-03-17 23:10:05.688 -07 000000627 INF: Z Motor: Moving to -0.138517 mm, started at -0.132054 mm, distance = -6.46 um
17-03-17 23:10:05.698 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:10:05.698 -07 000000627 INF: FPGA: Xmit ZDACW 30259\n [Z Motor]
17-03-17 23:10:05.698 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 23:10:05.708 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:10:05.708 -07 000000627 INF: FPGA: 'ZDACW 30259' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 23:10:05.708 -07 000000486 INF: FPGA: Recv YRDPOS 129482
17-03-17 23:10:05.718 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:10:05.718 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 23:10:05.718 -07 000000415 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:10:05.718 -07 000000415 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:10:05.718 -07 000000415 INF: Y Motor: Moving 1342 steps-19
17-03-17 23:10:05.728 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:10:05.728 -07 000000502 INF: FPGA: Recv ZDACR 30259
17-03-17 23:10:05.738 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:10:05.738 -07 000000627 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 23:10:05.738 -07 000000415 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:10:05.888 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 23:10:05.888 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 23:10:05.888 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:10:05.888 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 23:10:05.888 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 23:10:05.888 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:10:05.898 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:10:05.898 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 23:10:05.898 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 23:10:05.898 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 23:10:05.918 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:10:05.918 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 23:10:06.108 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 23:10:06.108 -07 000000415 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-17 23:10:06.158 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:10:06.158 -07 000000462 INF: FPGA: Recv YRDPOS 131187
17-03-17 23:10:06.168 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:10:06.168 -07 000000415 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:10:06.168 -07 000000415 INF: Y Motor: Position error before settling (table move) = -13 encoder counts (-0.006 mm)
17-03-17 23:10:06.168 -07 000000415 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.839 mm, average velocity = 2.108 mm/sec
17-03-17 23:10:07.038 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:10:07.038 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 71. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1150, R2=1196, Total=2346. Warn if over 250 bubbles per interval.
17-03-17 23:10:07.118 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:10:07.118 -07 000000551 INF: FPGA: Recv YRDPOS 131188
17-03-17 23:10:07.128 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:10:07.128 -07 000000415 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:10:07.148 -07 000000415 INF: Y Motor: After move to 64.062607, error = -0.005966, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:10:07.148 -07 000000415 INF: Y Motor: Position error after settling (table move) = -12 encoder counts (-0.006 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 23:10:07.148 -07 000000415 INF: Y Motor: Moved to 64.0566 after 1456 ms (table move)
17-03-17 23:10:07.148 -07 000000593 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138517 mm (DAC = 30259)
17-03-17 23:10:07.148 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:07.158 -07 000000475 INF: FPGA: Recv ZSGSRD 30857
17-03-17 23:10:07.158 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 23:10:07.158 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:07.158 -07 000000429 INF: FPGA: Recv ZSGSRD 30854
17-03-17 23:10:07.168 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:10:07.168 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:07.168 -07 000000478 INF: FPGA: Recv ZSGSRD 30842
17-03-17 23:10:07.178 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:07.178 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:07.178 -07 000000618 INF: FPGA: Recv ZSGSRD 30851
17-03-17 23:10:07.188 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:07.188 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:07.188 -07 000000482 INF: FPGA: Recv ZSGSRD 30855
17-03-17 23:10:07.198 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:07.198 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:07.198 -07 000000561 INF: FPGA: Recv ZSGSRD 30848
17-03-17 23:10:07.208 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:07.208 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:07.208 -07 000000502 INF: FPGA: Recv ZSGSRD 30852
17-03-17 23:10:07.218 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:07.218 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:07.218 -07 000000627 INF: FPGA: Recv ZSGSRD 30853
17-03-17 23:10:07.228 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:07.228 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:07.228 -07 000000551 INF: FPGA: Recv ZSGSRD 30855
17-03-17 23:10:07.238 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:07.238 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:07.238 -07 000000409 INF: FPGA: Recv ZSGSRD 30864
17-03-17 23:10:07.248 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:10:07.248 -07 000000593 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:10:07.248 -07 000000561 INF: FPGA: Recv ZPIEZORD 26759
17-03-17 23:10:07.258 -07 000000593 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:07.258 -07 000000593 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.617 V. Piezo Error = -9.0 V.
17-03-17 23:10:07.258 -07 000000593 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.5 um, Read 10 ADC samples: Avg = 30853 (-137.7 uncal um), Error = 0.8 uncal um, Median = 30854 (-137.7 uncal um), StdDev = 6 (0.0 uncal um), Range = 22 (0.1 uncal um), Min = 30842 (-137.7 uncal um), Max = 30864 (-137.8 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 23:10:07.258 -07 000000593 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30853, posNoise = 11, negNoise = 11
17-03-17 23:10:07.258 -07 000000593 INF: Z Motor: After move to -0.138517, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:10:07.258 -07 000000593 INF: Z Motor: Settle wait time = 1460 ms, measure time = 102 ms (allowed 150 ms), total time = 1562 ms
17-03-17 23:10:07.258 -07 000000593 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 23:10:07.308 -07 000000593 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1617 ms
17-03-17 23:10:07.308 -07 000000593 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:10:07.308 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:10:07.308 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:10:07.308 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:10:07.308 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:10:07.308 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:10:07.308 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:10:07.318 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:10:07.318 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:10:07.318 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 23:10:07.318 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:10:07.328 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 23:10:07.328 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-17 23:10:07.328 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:10:07.378 -07 000000551 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:10:07.578 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:10:07.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:10:07.578 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:10:07.578 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) start.
17-03-17 23:10:07.618 -07 000000462 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:10:07.618 -07 000000551 INF: FPGA: Recv CAMSNAP
17-03-17 23:10:07.618 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 274 ms to get response, and 284 ms overall
17-03-17 23:10:07.708 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 23:10:07.708 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:10:07.708 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 23:10:07.708 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 23:10:07.718 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:10:07.718 -07 000000623 INF: Autofocus start
17-03-17 23:10:07.718 -07 000000623 INF: MeasureProfile start
17-03-17 23:10:07.718 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:10:07.728 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:10:07.728 -07 000000482 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:10:07.728 -07 000000623 INF: MeasureProfile done
17-03-17 23:10:07.728 -07 000000623 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 23:10:07.728 -07 000000623 INF: Autofocus finished
17-03-17 23:10:07.928 -07 000000486 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:10:07.928 -07 000000482 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:10:07.928 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.056640625, Z-position -0.138529569220886. ----------
17-03-17 23:10:07.928 -07 000000610 INF: Cycle	72	Tile	6	Exposure Settings		A	468	G	225	T	225	C	468
17-03-17 23:10:07.938 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28754, sync = True, waitForSettling = True)
17-03-17 23:10:07.938 -07 000000610 INF: Z Motor: Moving to -0.131627 mm, started at -0.138530 mm, distance = 6.90 um
17-03-17 23:10:07.938 -07 000000610 INF: FPGA: Xmit ZDACW 28754\n [Z Motor]
17-03-17 23:10:07.938 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 23:10:07.948 -07 000000610 INF: FPGA: 'ZDACW 28754' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:10:07.948 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:10:07.948 -07 000000627 INF: FPGA: Recv ZDACR 28754
17-03-17 23:10:07.958 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:07.958 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:10:08.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:08.108 -07 000000547 INF: FPGA: Recv ZSGSRD 29784
17-03-17 23:10:08.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:10:08.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:08.118 -07 000000448 INF: FPGA: Recv ZSGSRD 29777
17-03-17 23:10:08.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:08.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:08.128 -07 000000429 INF: FPGA: Recv ZSGSRD 29779
17-03-17 23:10:08.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:08.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:08.138 -07 000000623 INF: FPGA: Recv ZSGSRD 29777
17-03-17 23:10:08.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:08.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:08.148 -07 000000627 INF: FPGA: Recv ZSGSRD 29780
17-03-17 23:10:08.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:08.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:08.158 -07 000000593 INF: FPGA: Recv ZSGSRD 29781
17-03-17 23:10:08.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:08.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:08.168 -07 000000382 INF: FPGA: Recv ZSGSRD 29781
17-03-17 23:10:08.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:08.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:08.178 -07 000000429 INF: FPGA: Recv ZSGSRD 29783
17-03-17 23:10:08.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:08.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:08.188 -07 000000448 INF: FPGA: Recv ZSGSRD 29784
17-03-17 23:10:08.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:08.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:08.198 -07 000000475 INF: FPGA: Recv ZSGSRD 29779
17-03-17 23:10:08.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:08.208 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:10:08.208 -07 000000593 INF: FPGA: Recv ZPIEZORD 25366
17-03-17 23:10:08.218 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:08.218 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.388 V. Piezo Error = -9.7 V.
17-03-17 23:10:08.218 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.6 um, Read 10 ADC samples: Avg = 29780 (-130.9 uncal um), Error = 0.8 uncal um, Median = 29780 (-130.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29777 (-130.8 uncal um), Max = 29784 (-130.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 23:10:08.218 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29780, posNoise = 4, negNoise = 3
17-03-17 23:10:08.218 -07 000000610 INF: Z Motor: After move to -0.131627, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:10:08.218 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 23:10:08.218 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:10:08.218 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:10:08.218 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:10:08.218 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:10:08.218 -07 000000409 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:10:08.218 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:10:08.218 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:10:08.218 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:10:08.218 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:10:08.218 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:10:08.218 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:10:08.218 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:10:08.228 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:10:08.228 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:10:08.228 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:10:08.228 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:10:08.238 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 23:10:08.238 -07 000000409 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:10:08.238 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 23:10:08.238 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:10:08.238 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 468 468 225 225 28931 150\n [Camera]
17-03-17 23:10:08.438 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:10:08.908 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 661
17-03-17 23:10:08.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 661
17-03-17 23:10:08.908 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:10:08.908 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:10:08.908 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 661
17-03-17 23:10:08.908 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 661
17-03-17 23:10:08.908 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-17 23:10:08.908 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:10:08.908 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:10:08.908 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 23:10:09.098 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28931 853
17-03-17 23:10:09.128 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 72, FrontChillerTemperature: 4.014009,
17-03-17 23:10:09.248 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1003
17-03-17 23:10:09.288 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 23:10:09.288 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 23:10:09.288 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:10:09.288 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 23:10:09.288 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 23:10:09.288 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:10:09.298 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 23:10:09.298 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:10:09.298 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 23:10:09.298 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 23:10:09.478 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1228
17-03-17 23:10:09.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1228
17-03-17 23:10:09.478 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:10:09.478 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:10:09.478 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-17 23:10:09.478 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1228
17-03-17 23:10:09.478 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1228
17-03-17 23:10:09.478 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:10:09.478 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:10:09.478 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-17 23:10:09.668 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1420
17-03-17 23:10:09.668 -07 000000623 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:10:09.668 -07 000000610 INF: FPGA: 'CAMDBLSNAP 468 468 225 225 28931 150' command took 2 ms to send, 1421 ms to get response, and 1427 ms overall
17-03-17 23:10:09.668 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:10:09.668 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.056640625, Z-Position -0.131636389592776. ------
17-03-17 23:10:09.668 -07 000000475 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13798 mm
17-03-17 23:10:09.668 -07 000000475 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:10:09.668 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:10:09.678 -07 000000593 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 23:10:09.678 -07 000000593 INF: Y Motor: Moving to 64.8926 mm, started at 64.0566 mm, delta = 0.8360 mm
17-03-17 23:10:09.678 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:10:09.678 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 30142, sync = True, waitForSettling = False)
17-03-17 23:10:09.678 -07 000000382 INF: Z Motor: Moving to -0.137981 mm, started at -0.131636 mm, distance = -6.34 um
17-03-17 23:10:09.678 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:10:09.678 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 23:10:09.678 -07 000000547 INF: FPGA: Recv YRDPOS 131188
17-03-17 23:10:09.688 -07 000000382 INF: FPGA: Xmit ZDACW 30142\n [Z Motor]
17-03-17 23:10:09.688 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:09.688 -07 000000593 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:10:09.688 -07 000000593 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:10:09.688 -07 000000593 INF: Y Motor: Moving 1338 steps-13
17-03-17 23:10:09.688 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 23:10:09.698 -07 000000382 INF: FPGA: 'ZDACW 30142' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 23:10:09.698 -07 000000478 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:10:09.708 -07 000000593 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:10:09.718 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:10:09.718 -07 000000561 INF: FPGA: Recv ZDACR 30142
17-03-17 23:10:09.728 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:10:09.728 -07 000000382 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 23:10:09.858 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 23:10:09.858 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 23:10:09.858 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:10:09.868 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:10:09.868 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 23:10:09.868 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 23:10:09.868 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:10:09.868 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 23:10:09.868 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 23:10:09.868 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 23:10:09.898 -07 000000576 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:10:09.898 -07 000000478 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 220 ms overall
17-03-17 23:10:10.078 -07 000000547 INF: FPGA: Recv YMVTILE
17-03-17 23:10:10.078 -07 000000593 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 23:10:10.118 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:10:10.128 -07 000000382 INF: FPGA: Recv YRDPOS 132871
17-03-17 23:10:10.128 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 23:10:10.128 -07 000000593 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:10:10.128 -07 000000593 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 23:10:10.128 -07 000000593 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.836 mm, average velocity = 2.106 mm/sec
17-03-17 23:10:11.078 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:10:11.078 -07 000000415 INF: FPGA: Recv YRDPOS 132871
17-03-17 23:10:11.088 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:10:11.088 -07 000000593 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:10:11.108 -07 000000593 INF: Y Motor: After move to 64.892609, error = -0.014191, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:10:11.108 -07 000000593 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:10:11.108 -07 000000593 INF: Y Motor: Moved to 64.8784 after 1436 ms (table move)
17-03-17 23:10:11.118 -07 000000475 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137981 mm (DAC = 30142)
17-03-17 23:10:11.118 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:11.118 -07 000000541 INF: FPGA: Recv ZSGSRD 30762
17-03-17 23:10:11.128 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:11.128 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:11.128 -07 000000448 INF: FPGA: Recv ZSGSRD 30766
17-03-17 23:10:11.138 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:11.138 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:11.138 -07 000000547 INF: FPGA: Recv ZSGSRD 30770
17-03-17 23:10:11.148 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:11.148 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:11.148 -07 000000382 INF: FPGA: Recv ZSGSRD 30770
17-03-17 23:10:11.158 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:11.158 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:11.158 -07 000000486 INF: FPGA: Recv ZSGSRD 30773
17-03-17 23:10:11.168 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:11.168 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:11.168 -07 000000576 INF: FPGA: Recv ZSGSRD 30772
17-03-17 23:10:11.178 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:11.178 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:11.178 -07 000000551 INF: FPGA: Recv ZSGSRD 30764
17-03-17 23:10:11.188 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:11.188 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:11.188 -07 000000409 INF: FPGA: Recv ZSGSRD 30764
17-03-17 23:10:11.198 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:11.198 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:11.198 -07 000000382 INF: FPGA: Recv ZSGSRD 30763
17-03-17 23:10:11.208 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:11.208 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:11.208 -07 000000593 INF: FPGA: Recv ZSGSRD 30770
17-03-17 23:10:11.218 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:11.218 -07 000000475 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:10:11.218 -07 000000462 INF: FPGA: Recv ZPIEZORD 26677
17-03-17 23:10:11.228 -07 000000475 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:11.228 -07 000000475 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.599 V. Piezo Error = -9.0 V.
17-03-17 23:10:11.228 -07 000000475 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.0 um, Read 10 ADC samples: Avg = 30767 (-137.2 uncal um), Error = 0.8 uncal um, Median = 30768 (-137.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30762 (-137.1 uncal um), Max = 30773 (-137.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:10:11.228 -07 000000475 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30767, posNoise = 6, negNoise = 5
17-03-17 23:10:11.228 -07 000000475 INF: Z Motor: After move to -0.137981, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:10:11.228 -07 000000475 INF: Z Motor: Settle wait time = 1439 ms, measure time = 110 ms (allowed 150 ms), total time = 1549 ms
17-03-17 23:10:11.228 -07 000000475 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 23:10:11.268 -07 000000475 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-17 23:10:11.268 -07 000000475 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:10:11.268 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:10:11.268 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:10:11.268 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:10:11.268 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:10:11.268 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:10:11.268 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:10:11.278 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:10:11.278 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:10:11.278 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:10:11.278 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:10:11.288 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 23:10:11.288 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 23:10:11.288 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:10:11.328 -07 000000415 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:10:11.528 -07 000000551 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:10:11.528 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:10:11.538 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:10:11.538 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2402648392, 0x0, 559484976) start.
17-03-17 23:10:11.568 -07 000000623 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:10:11.568 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-17 23:10:11.568 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 23:10:11.648 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2402648392, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 23:10:11.648 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:10:11.648 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 23:10:11.648 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 23:10:11.668 -07 000000561 INF: Autofocus start
17-03-17 23:10:11.668 -07 000000561 INF: MeasureProfile start
17-03-17 23:10:11.668 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:10:11.668 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:10:11.678 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:10:11.678 -07 000000547 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:10:11.678 -07 000000561 INF: MeasureProfile done
17-03-17 23:10:11.678 -07 000000561 INF: X=80  Z correction [um]=0.3608828
17-03-17 23:10:11.678 -07 000000561 INF: Autofocus finished
17-03-17 23:10:11.878 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:10:11.878 -07 000000547 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:10:11.878 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87841796875, Z-position -0.137977086976694. ----------
17-03-17 23:10:11.878 -07 000000610 INF: Cycle	72	Tile	7	Exposure Settings		A	468	G	225	T	225	C	468
17-03-17 23:10:11.888 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28734, sync = True, waitForSettling = True)
17-03-17 23:10:11.888 -07 000000610 INF: Z Motor: Moving to -0.131536 mm, started at -0.137977 mm, distance = 6.44 um
17-03-17 23:10:11.888 -07 000000610 INF: FPGA: Xmit ZDACW 28734\n [Z Motor]
17-03-17 23:10:11.888 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 23:10:11.898 -07 000000610 INF: FPGA: 'ZDACW 28734' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:10:11.898 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:10:11.898 -07 000000623 INF: FPGA: Recv ZDACR 28734
17-03-17 23:10:11.908 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:11.908 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:10:12.038 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:10:12.038 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 71. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1150, R2=1196, Total=2346. Warn if over 250 bubbles per interval.
17-03-17 23:10:12.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:12.058 -07 000000618 INF: FPGA: Recv ZSGSRD 29766
17-03-17 23:10:12.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:10:12.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:12.068 -07 000000623 INF: FPGA: Recv ZSGSRD 29762
17-03-17 23:10:12.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:12.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:12.078 -07 000000593 INF: FPGA: Recv ZSGSRD 29766
17-03-17 23:10:12.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:12.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:12.088 -07 000000551 INF: FPGA: Recv ZSGSRD 29765
17-03-17 23:10:12.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:12.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:12.098 -07 000000541 INF: FPGA: Recv ZSGSRD 29760
17-03-17 23:10:12.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:12.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:12.108 -07 000000576 INF: FPGA: Recv ZSGSRD 29771
17-03-17 23:10:12.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:12.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:12.118 -07 000000415 INF: FPGA: Recv ZSGSRD 29760
17-03-17 23:10:12.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:12.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:12.128 -07 000000429 INF: FPGA: Recv ZSGSRD 29766
17-03-17 23:10:12.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:12.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:12.138 -07 000000478 INF: FPGA: Recv ZSGSRD 29767
17-03-17 23:10:12.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:12.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:12.148 -07 000000561 INF: FPGA: Recv ZSGSRD 29762
17-03-17 23:10:12.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:12.158 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:10:12.158 -07 000000429 INF: FPGA: Recv ZPIEZORD 25340
17-03-17 23:10:12.168 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:12.168 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.385 V. Piezo Error = -9.7 V.
17-03-17 23:10:12.168 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.5 um, Read 10 ADC samples: Avg = 29764 (-130.8 uncal um), Error = 0.8 uncal um, Median = 29766 (-130.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29760 (-130.7 uncal um), Max = 29771 (-130.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:10:12.168 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29764, posNoise = 7, negNoise = 4
17-03-17 23:10:12.168 -07 000000610 INF: Z Motor: After move to -0.131536, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:10:12.168 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 23:10:12.168 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:10:12.168 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:10:12.168 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:10:12.168 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:10:12.168 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:10:12.168 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:10:12.168 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:10:12.168 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:10:12.168 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:10:12.168 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:10:12.168 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:10:12.168 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:10:12.178 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 23:10:12.178 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:10:12.178 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:10:12.178 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:10:12.188 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 23:10:12.188 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 23:10:12.188 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 23:10:12.188 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 23:10:12.188 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 468 468 225 225 28910 150\n [Camera]
17-03-17 23:10:12.388 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:10:12.858 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 660
17-03-17 23:10:12.858 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 660
17-03-17 23:10:12.858 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:10:12.858 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:10:12.858 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-17 23:10:12.868 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 660
17-03-17 23:10:12.868 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 660
17-03-17 23:10:12.868 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:10:12.868 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:10:12.868 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) start.
17-03-17 23:10:13.048 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28910 853
17-03-17 23:10:13.208 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1003
17-03-17 23:10:13.258 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 23:10:13.258 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 23:10:13.258 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:10:13.258 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:10:13.258 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 23:10:13.258 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 23:10:13.258 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 23:10:13.258 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:10:13.258 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:10:13.268 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 23:10:13.428 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1228
17-03-17 23:10:13.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1228
17-03-17 23:10:13.428 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:10:13.568 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1228
17-03-17 23:10:13.568 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1228
17-03-17 23:10:13.568 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:10:13.568 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:10:13.568 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) start.
17-03-17 23:10:13.578 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:10:13.578 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 23:10:13.618 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1421
17-03-17 23:10:13.618 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:10:13.618 -07 000000610 INF: FPGA: 'CAMDBLSNAP 468 468 225 225 28910 150' command took 2 ms to send, 1416 ms to get response, and 1428 ms overall
17-03-17 23:10:13.618 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:10:13.618 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87841796875, Z-Position -0.131533602198508. ------
17-03-17 23:10:13.628 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:10:13.628 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13819 mm
17-03-17 23:10:13.628 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:10:13.628 -07 000000475 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 23:10:13.628 -07 000000475 INF: Y Motor: Moving to 65.7226 mm, started at 64.8784 mm, delta = 0.8442 mm
17-03-17 23:10:13.628 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:10:13.628 -07 000000478 INF: Z Motor: Entering MoveAbsStepped (DAC = 30188, sync = True, waitForSettling = False)
17-03-17 23:10:13.628 -07 000000478 INF: Z Motor: Moving to -0.138192 mm, started at -0.131534 mm, distance = -6.66 um
17-03-17 23:10:13.638 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:10:13.638 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:10:13.638 -07 000000462 INF: FPGA: Recv YRDPOS 132872
17-03-17 23:10:13.648 -07 000000478 INF: FPGA: Xmit ZDACW 30188\n [Z Motor]
17-03-17 23:10:13.648 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 23:10:13.648 -07 000000475 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:10:13.648 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 23:10:13.648 -07 000000475 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:10:13.648 -07 000000475 INF: Y Motor: Moving 1350 steps-29
17-03-17 23:10:13.658 -07 000000482 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:10:13.658 -07 000000478 INF: FPGA: 'ZDACW 30188' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 23:10:13.668 -07 000000475 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:10:13.678 -07 000000478 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:10:13.678 -07 000000462 INF: FPGA: Recv ZDACR 30188
17-03-17 23:10:13.688 -07 000000478 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:10:13.688 -07 000000478 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-17 23:10:13.858 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:10:13.858 -07 000000482 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 23:10:13.968 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 23:10:13.968 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 23:10:13.968 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:10:13.968 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 390 ms.
17-03-17 23:10:13.968 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 23:10:13.968 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:10:13.978 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:10:13.978 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 545 ms.
17-03-17 23:10:13.978 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:10:13.978 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 23:10:14.038 -07 000000486 INF: FPGA: Recv YMVTILE
17-03-17 23:10:14.038 -07 000000475 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-17 23:10:14.078 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:10:14.088 -07 000000618 INF: FPGA: Recv YRDPOS 134581
17-03-17 23:10:14.088 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 23:10:14.088 -07 000000475 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:10:14.088 -07 000000475 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 23:10:14.088 -07 000000475 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.844 mm, average velocity = 2.159 mm/sec
17-03-17 23:10:14.498 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 72, FrontChillerTemperature: 4.023489,
17-03-17 23:10:15.038 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:10:15.038 -07 000000478 INF: FPGA: Recv YRDPOS 134582
17-03-17 23:10:15.048 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:10:15.048 -07 000000475 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:10:15.068 -07 000000475 INF: Y Motor: After move to 65.722610, error = -0.008743, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:10:15.068 -07 000000475 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 23:10:15.068 -07 000000475 INF: Y Motor: Moved to 65.7139 after 1442 ms (table move)
17-03-17 23:10:15.078 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138192 mm (DAC = 30188)
17-03-17 23:10:15.078 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:15.078 -07 000000486 INF: FPGA: Recv ZSGSRD 30809
17-03-17 23:10:15.088 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:10:15.088 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:15.088 -07 000000551 INF: FPGA: Recv ZSGSRD 30806
17-03-17 23:10:15.098 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:15.098 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:15.098 -07 000000415 INF: FPGA: Recv ZSGSRD 30807
17-03-17 23:10:15.108 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:15.108 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:15.108 -07 000000478 INF: FPGA: Recv ZSGSRD 30803
17-03-17 23:10:15.118 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:15.118 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:15.118 -07 000000618 INF: FPGA: Recv ZSGSRD 30805
17-03-17 23:10:15.128 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:15.128 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:15.128 -07 000000541 INF: FPGA: Recv ZSGSRD 30798
17-03-17 23:10:15.138 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:15.138 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:15.138 -07 000000448 INF: FPGA: Recv ZSGSRD 30802
17-03-17 23:10:15.148 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:15.148 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:15.148 -07 000000502 INF: FPGA: Recv ZSGSRD 30801
17-03-17 23:10:15.158 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:15.158 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:15.158 -07 000000623 INF: FPGA: Recv ZSGSRD 30795
17-03-17 23:10:15.168 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:15.168 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:15.168 -07 000000382 INF: FPGA: Recv ZSGSRD 30807
17-03-17 23:10:15.178 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:15.178 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:10:15.178 -07 000000627 INF: FPGA: Recv ZPIEZORD 26718
17-03-17 23:10:15.188 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:15.188 -07 000000561 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.606 V. Piezo Error = -9.0 V.
17-03-17 23:10:15.188 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.2 um, Read 10 ADC samples: Avg = 30803 (-137.4 uncal um), Error = 0.8 uncal um, Median = 30804 (-137.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30795 (-137.4 uncal um), Max = 30809 (-137.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 23:10:15.188 -07 000000561 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30803, posNoise = 6, negNoise = 8
17-03-17 23:10:15.188 -07 000000561 INF: Z Motor: After move to -0.138192, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:10:15.188 -07 000000561 INF: Z Motor: Settle wait time = 1444 ms, measure time = 110 ms (allowed 150 ms), total time = 1554 ms
17-03-17 23:10:15.188 -07 000000561 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 23:10:15.228 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms
17-03-17 23:10:15.228 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:10:15.228 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:10:15.228 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:10:15.228 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:10:15.238 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:10:15.238 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:10:15.238 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:10:15.238 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:10:15.238 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:10:15.238 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:10:15.238 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:10:15.248 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 23:10:15.248 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 21 ms.
17-03-17 23:10:15.258 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:10:15.298 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:10:15.498 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:10:15.498 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:10:15.498 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:10:15.498 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2451345512, 0x0, 559484976) start.
17-03-17 23:10:15.538 -07 000000593 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:10:15.538 -07 000000409 INF: FPGA: Recv CAMSNAP
17-03-17 23:10:15.538 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 285 ms overall
17-03-17 23:10:15.628 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2451345512, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 23:10:15.628 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:10:15.628 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:10:15.628 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 23:10:15.738 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:10:15.738 -07 000000382 INF: Autofocus start
17-03-17 23:10:15.738 -07 000000382 INF: MeasureProfile start
17-03-17 23:10:15.738 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:10:15.748 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:10:15.748 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:10:15.748 -07 000000382 INF: MeasureProfile done
17-03-17 23:10:15.748 -07 000000382 INF: X=0  Z correction [um]=-0.02394831
17-03-17 23:10:15.748 -07 000000382 INF: Autofocus finished
17-03-17 23:10:15.948 -07 000000547 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:10:15.948 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:10:15.948 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.7138671875, Z-position -0.138208358613798. ----------
17-03-17 23:10:15.958 -07 000000610 INF: Cycle	72	Tile	8	Exposure Settings		A	468	G	225	T	225	C	468
17-03-17 23:10:15.958 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28695, sync = True, waitForSettling = True)
17-03-17 23:10:15.958 -07 000000610 INF: Z Motor: Moving to -0.131357 mm, started at -0.138208 mm, distance = 6.85 um
17-03-17 23:10:15.958 -07 000000610 INF: FPGA: Xmit ZDACW 28695\n [Z Motor]
17-03-17 23:10:15.958 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 23:10:15.968 -07 000000610 INF: FPGA: 'ZDACW 28695' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:10:15.968 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:10:15.968 -07 000000623 INF: FPGA: Recv ZDACR 28695
17-03-17 23:10:15.978 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:15.978 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:10:16.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:16.128 -07 000000486 INF: FPGA: Recv ZSGSRD 29739
17-03-17 23:10:16.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:10:16.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:16.138 -07 000000618 INF: FPGA: Recv ZSGSRD 29744
17-03-17 23:10:16.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:16.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:16.148 -07 000000576 INF: FPGA: Recv ZSGSRD 29733
17-03-17 23:10:16.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:16.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:16.158 -07 000000462 INF: FPGA: Recv ZSGSRD 29736
17-03-17 23:10:16.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:16.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:16.168 -07 000000502 INF: FPGA: Recv ZSGSRD 29735
17-03-17 23:10:16.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:16.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:16.178 -07 000000486 INF: FPGA: Recv ZSGSRD 29739
17-03-17 23:10:16.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:16.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:16.188 -07 000000618 INF: FPGA: Recv ZSGSRD 29733
17-03-17 23:10:16.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:16.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:16.198 -07 000000576 INF: FPGA: Recv ZSGSRD 29734
17-03-17 23:10:16.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:16.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:16.208 -07 000000501 INF: FPGA: Recv ZSGSRD 29741
17-03-17 23:10:16.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:16.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:16.218 -07 000000627 INF: FPGA: Recv ZSGSRD 29735
17-03-17 23:10:16.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:16.228 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:10:16.228 -07 000000486 INF: FPGA: Recv ZPIEZORD 25337
17-03-17 23:10:16.238 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:16.238 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.379 V. Piezo Error = -9.7 V.
17-03-17 23:10:16.238 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.4 um, Read 10 ADC samples: Avg = 29737 (-130.6 uncal um), Error = 0.8 uncal um, Median = 29736 (-130.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29733 (-130.6 uncal um), Max = 29744 (-130.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:10:16.238 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29737, posNoise = 7, negNoise = 4
17-03-17 23:10:16.238 -07 000000610 INF: Z Motor: After move to -0.131357, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:10:16.238 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 23:10:16.238 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:10:16.238 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:10:16.238 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:10:16.238 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:10:16.238 -07 000000409 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:10:16.238 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:10:16.238 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:10:16.238 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:10:16.238 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:10:16.238 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:10:16.238 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:10:16.238 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:10:16.248 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:10:16.248 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:10:16.248 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:10:16.248 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:10:16.258 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 23:10:16.258 -07 000000409 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 23:10:16.258 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 23:10:16.258 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 23:10:16.258 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 468 468 225 225 28872 150\n [Camera]
17-03-17 23:10:16.458 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:10:16.928 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 660
17-03-17 23:10:16.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 660
17-03-17 23:10:16.928 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:10:16.928 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 660
17-03-17 23:10:16.928 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 660
17-03-17 23:10:16.928 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:10:16.938 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:10:16.938 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2470426896, 0x0, 391868352) start.
17-03-17 23:10:16.938 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:10:16.938 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-17 23:10:17.038 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:10:17.038 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 71. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1150, R2=1196, Total=2346. Warn if over 250 bubbles per interval.
17-03-17 23:10:17.118 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28872 853
17-03-17 23:10:17.268 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1003
17-03-17 23:10:17.308 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 23:10:17.308 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 23:10:17.308 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:10:17.308 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2470426896, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 23:10:17.308 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 23:10:17.308 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:10:17.318 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 23:10:17.318 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 23:10:17.318 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 23:10:17.318 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 23:10:17.488 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1228
17-03-17 23:10:17.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1228
17-03-17 23:10:17.498 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:10:17.618 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1228
17-03-17 23:10:17.618 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1228
17-03-17 23:10:17.618 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:10:17.628 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:10:17.628 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:10:17.628 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 23:10:17.628 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 23:10:17.688 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1420
17-03-17 23:10:17.688 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:10:17.688 -07 000000610 INF: FPGA: 'CAMDBLSNAP 468 468 225 225 28872 150' command took 2 ms to send, 1421 ms to get response, and 1427 ms overall
17-03-17 23:10:17.688 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:10:17.688 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.7138671875, Z-Position -0.131360148470681. ------
17-03-17 23:10:17.688 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:10:17.688 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13770 mm
17-03-17 23:10:17.688 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:10:17.688 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 23:10:17.688 -07 000000501 INF: Y Motor: Moving to 66.5526 mm, started at 65.7139 mm, delta = 0.8387 mm
17-03-17 23:10:17.688 -07 000000429 INF: Z Motor: Entering MoveAbsStepped (DAC = 30081, sync = True, waitForSettling = False)
17-03-17 23:10:17.688 -07 000000429 INF: Z Motor: Moving to -0.137702 mm, started at -0.131360 mm, distance = -6.34 um
17-03-17 23:10:17.688 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:10:17.698 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:10:17.698 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:10:17.698 -07 000000618 INF: FPGA: Recv YRDPOS 134582
17-03-17 23:10:17.708 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 23:10:17.708 -07 000000501 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:10:17.708 -07 000000501 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:10:17.708 -07 000000501 INF: Y Motor: Moving 1342 steps-19
17-03-17 23:10:17.708 -07 000000429 INF: FPGA: Xmit ZDACW 30081\n [Z Motor]
17-03-17 23:10:17.708 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 23:10:17.718 -07 000000415 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:10:17.718 -07 000000429 INF: FPGA: 'ZDACW 30081' command took 1 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 23:10:17.728 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:10:17.738 -07 000000429 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:10:17.738 -07 000000409 INF: FPGA: Recv ZDACR 30081
17-03-17 23:10:17.748 -07 000000429 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:10:17.748 -07 000000429 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 23:10:17.918 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:10:17.918 -07 000000415 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 23:10:18.008 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 23:10:18.008 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 23:10:18.008 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:10:18.018 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 23:10:18.018 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 23:10:18.018 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:10:18.018 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:10:18.018 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:10:18.018 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 524 ms.
17-03-17 23:10:18.018 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 23:10:18.098 -07 000000409 INF: FPGA: Recv YMVTILE
17-03-17 23:10:18.098 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 23:10:18.138 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:10:18.148 -07 000000551 INF: FPGA: Recv YRDPOS 136271
17-03-17 23:10:18.148 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 23:10:18.148 -07 000000501 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:10:18.148 -07 000000501 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 23:10:18.148 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.113 mm/sec
17-03-17 23:10:19.098 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:10:19.098 -07 000000382 INF: FPGA: Recv YRDPOS 136271
17-03-17 23:10:19.108 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:10:19.108 -07 000000501 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:10:19.128 -07 000000501 INF: Y Motor: After move to 66.552605, error = -0.014030, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:10:19.128 -07 000000501 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:10:19.128 -07 000000501 INF: Y Motor: Moved to 66.5386 after 1440 ms (table move)
17-03-17 23:10:19.138 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137702 mm (DAC = 30081)
17-03-17 23:10:19.138 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:19.138 -07 000000627 INF: FPGA: Recv ZSGSRD 30721
17-03-17 23:10:19.148 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:10:19.148 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:19.148 -07 000000551 INF: FPGA: Recv ZSGSRD 30722
17-03-17 23:10:19.158 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:19.158 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:19.158 -07 000000475 INF: FPGA: Recv ZSGSRD 30732
17-03-17 23:10:19.168 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:19.168 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:19.168 -07 000000429 INF: FPGA: Recv ZSGSRD 30731
17-03-17 23:10:19.178 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:19.178 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:19.178 -07 000000618 INF: FPGA: Recv ZSGSRD 30727
17-03-17 23:10:19.188 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:19.188 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:19.188 -07 000000448 INF: FPGA: Recv ZSGSRD 30727
17-03-17 23:10:19.198 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:19.198 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:19.198 -07 000000409 INF: FPGA: Recv ZSGSRD 30721
17-03-17 23:10:19.208 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:19.208 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:19.208 -07 000000482 INF: FPGA: Recv ZSGSRD 30721
17-03-17 23:10:19.218 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:19.218 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:19.218 -07 000000429 INF: FPGA: Recv ZSGSRD 30719
17-03-17 23:10:19.228 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:19.228 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:19.228 -07 000000618 INF: FPGA: Recv ZSGSRD 30728
17-03-17 23:10:19.238 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:19.238 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:10:19.238 -07 000000576 INF: FPGA: Recv ZPIEZORD 26688
17-03-17 23:10:19.248 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:19.248 -07 000000502 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.590 V. Piezo Error = -8.9 V.
17-03-17 23:10:19.248 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.7 um, Read 10 ADC samples: Avg = 30725 (-136.9 uncal um), Error = 0.8 uncal um, Median = 30724 (-136.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30719 (-136.9 uncal um), Max = 30732 (-137.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:10:19.248 -07 000000502 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30725, posNoise = 7, negNoise = 6
17-03-17 23:10:19.248 -07 000000502 INF: Z Motor: After move to -0.137702, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:10:19.248 -07 000000502 INF: Z Motor: Settle wait time = 1442 ms, measure time = 110 ms (allowed 150 ms), total time = 1552 ms
17-03-17 23:10:19.248 -07 000000502 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 23:10:19.288 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1594 ms
17-03-17 23:10:19.288 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:10:19.288 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:10:19.288 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:10:19.288 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:10:19.288 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:10:19.288 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:10:19.288 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:10:19.288 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:10:19.288 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:10:19.298 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:10:19.298 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:10:19.298 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 23:10:19.298 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 23:10:19.308 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:10:19.348 -07 000000415 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:10:19.548 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:10:19.548 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:10:19.548 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:10:19.548 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2451345512, 0x0, 559484976) start.
17-03-17 23:10:19.588 -07 000000475 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:10:19.588 -07 000000547 INF: FPGA: Recv CAMSNAP
17-03-17 23:10:19.588 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 284 ms overall
17-03-17 23:10:19.668 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2451345512, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 23:10:19.668 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:10:19.668 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:10:19.668 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 23:10:19.688 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:10:19.688 -07 000000618 INF: Autofocus start
17-03-17 23:10:19.688 -07 000000618 INF: MeasureProfile start
17-03-17 23:10:19.688 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:10:19.698 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:10:19.698 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:10:19.708 -07 000000618 INF: MeasureProfile done
17-03-17 23:10:19.708 -07 000000618 INF: X=32  Z correction [um]=0.1299841
17-03-17 23:10:19.708 -07 000000618 INF: Autofocus finished
17-03-17 23:10:19.858 -07 000000593 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 72, FrontChillerTemperature: 3.993549,
17-03-17 23:10:19.898 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:10:19.898 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 198 ms to get response, and 208 ms overall
17-03-17 23:10:19.908 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53857421875, Z-position -0.13770727006674. ----------
17-03-17 23:10:19.908 -07 000000610 INF: Cycle	72	Tile	9	Exposure Settings		A	468	G	225	T	225	C	468
17-03-17 23:10:19.908 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28622, sync = True, waitForSettling = True)
17-03-17 23:10:19.908 -07 000000610 INF: Z Motor: Moving to -0.131023 mm, started at -0.137707 mm, distance = 6.68 um
17-03-17 23:10:19.908 -07 000000610 INF: FPGA: Xmit ZDACW 28622\n [Z Motor]
17-03-17 23:10:19.918 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 23:10:19.918 -07 000000610 INF: FPGA: 'ZDACW 28622' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 23:10:19.918 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:10:19.918 -07 000000593 INF: FPGA: Recv ZDACR 28622
17-03-17 23:10:19.928 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:19.928 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:10:20.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:20.078 -07 000000618 INF: FPGA: Recv ZSGSRD 29680
17-03-17 23:10:20.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:10:20.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:20.088 -07 000000462 INF: FPGA: Recv ZSGSRD 29683
17-03-17 23:10:20.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:20.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:20.098 -07 000000501 INF: FPGA: Recv ZSGSRD 29687
17-03-17 23:10:20.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:20.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:20.108 -07 000000486 INF: FPGA: Recv ZSGSRD 29682
17-03-17 23:10:20.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:20.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:20.118 -07 000000429 INF: FPGA: Recv ZSGSRD 29685
17-03-17 23:10:20.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:20.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:20.128 -07 000000478 INF: FPGA: Recv ZSGSRD 29685
17-03-17 23:10:20.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:20.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:20.138 -07 000000415 INF: FPGA: Recv ZSGSRD 29683
17-03-17 23:10:20.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:20.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:20.148 -07 000000482 INF: FPGA: Recv ZSGSRD 29685
17-03-17 23:10:20.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:20.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:20.158 -07 000000623 INF: FPGA: Recv ZSGSRD 29685
17-03-17 23:10:20.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:20.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:20.168 -07 000000501 INF: FPGA: Recv ZSGSRD 29687
17-03-17 23:10:20.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:20.178 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:10:20.178 -07 000000547 INF: FPGA: Recv ZPIEZORD 25299
17-03-17 23:10:20.188 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:20.188 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.367 V. Piezo Error = -9.6 V.
17-03-17 23:10:20.188 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.0 um, Read 10 ADC samples: Avg = 29684 (-130.2 uncal um), Error = 0.8 uncal um, Median = 29685 (-130.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29680 (-130.2 uncal um), Max = 29687 (-130.3 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:10:20.188 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29684, posNoise = 3, negNoise = 4
17-03-17 23:10:20.188 -07 000000610 INF: Z Motor: After move to -0.131023, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:10:20.188 -07 000000610 INF: Z Motor: MoveAbsStepped took 273 ms)
17-03-17 23:10:20.188 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:10:20.188 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:10:20.188 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:10:20.188 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:10:20.188 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:10:20.188 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:10:20.188 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:10:20.188 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:10:20.188 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:10:20.188 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:10:20.188 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:10:20.188 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:10:20.198 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:10:20.198 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:10:20.198 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:10:20.198 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:10:20.208 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 23:10:20.208 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 23:10:20.208 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 23:10:20.208 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 23:10:20.228 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 468 468 225 225 28799 150\n [Camera]
17-03-17 23:10:20.418 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:10:20.888 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 660
17-03-17 23:10:20.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 660
17-03-17 23:10:20.888 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:10:20.888 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:10:20.888 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 2470426896, 0x0, 391868352) start.
17-03-17 23:10:20.898 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 660
17-03-17 23:10:20.898 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 660
17-03-17 23:10:20.898 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:10:20.898 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:10:20.898 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2505849160, 0x0, 418435064) start.
17-03-17 23:10:21.158 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28799 853
17-03-17 23:10:21.238 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1003
17-03-17 23:10:21.268 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2505849160, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 23:10:21.268 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 23:10:21.268 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:10:21.278 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 2470426896, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 23:10:21.278 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 23:10:21.278 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:10:21.278 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:10:21.278 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:10:21.278 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 23:10:21.288 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 23:10:21.458 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1228
17-03-17 23:10:21.458 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1228
17-03-17 23:10:21.458 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:10:21.458 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1228
17-03-17 23:10:21.458 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1228
17-03-17 23:10:21.468 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:10:21.468 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:10:21.468 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 23:10:21.468 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:10:21.468 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 23:10:21.648 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1420
17-03-17 23:10:21.648 -07 000000475 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:10:21.648 -07 000000610 INF: FPGA: 'CAMDBLSNAP 468 468 225 225 28799 150' command took 2 ms to send, 1418 ms to get response, and 1442 ms overall
17-03-17 23:10:21.658 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:10:21.658 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53857421875, Z-Position -0.131019665227167. ------
17-03-17 23:10:21.658 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:10:21.658 -07 000000415 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13778 mm
17-03-17 23:10:21.658 -07 000000415 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:10:21.658 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:10:21.658 -07 000000627 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 23:10:21.658 -07 000000627 INF: Y Motor: Moving to 67.3826 mm, started at 66.5386 mm, delta = 0.8440 mm
17-03-17 23:10:21.658 -07 000000409 INF: Z Motor: Entering MoveAbsStepped (DAC = 30097, sync = True, waitForSettling = False)
17-03-17 23:10:21.658 -07 000000409 INF: Z Motor: Moving to -0.137775 mm, started at -0.131020 mm, distance = -6.76 um
17-03-17 23:10:21.668 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:10:21.668 -07 000000409 INF: FPGA: Xmit ZDACW 30097\n [Z Motor]
17-03-17 23:10:21.668 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 23:10:21.678 -07 000000409 INF: FPGA: 'ZDACW 30097' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:10:21.678 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:10:21.688 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:10:21.688 -07 000000429 INF: FPGA: Recv YRDPOS 136271
17-03-17 23:10:21.698 -07 000000409 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:10:21.698 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 23:10:21.698 -07 000000627 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:10:21.698 -07 000000627 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:10:21.698 -07 000000627 INF: Y Motor: Moving 1350 steps-29
17-03-17 23:10:21.698 -07 000000593 INF: FPGA: Recv ZDACR 30097
17-03-17 23:10:21.708 -07 000000409 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:10:21.708 -07 000000409 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-17 23:10:21.708 -07 000000627 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:10:21.868 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 23:10:21.868 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 23:10:21.868 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:10:21.868 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 23:10:21.868 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 23:10:21.868 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:10:21.868 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:10:21.868 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:10:21.868 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 23:10:21.878 -07 000000623 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:10:21.878 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 23:10:21.878 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 23:10:22.038 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:10:22.038 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 71. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1150, R2=1196, Total=2346. Warn if over 250 bubbles per interval.
17-03-17 23:10:22.078 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 23:10:22.078 -07 000000627 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 388 ms overall
17-03-17 23:10:22.118 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:10:22.128 -07 000000409 INF: FPGA: Recv YRDPOS 137977
17-03-17 23:10:22.128 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 23:10:22.128 -07 000000627 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:10:22.128 -07 000000627 INF: Y Motor: Position error before settling (table move) = -23 encoder counts (-0.011 mm)
17-03-17 23:10:22.128 -07 000000627 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.844 mm, average velocity = 2.175 mm/sec
17-03-17 23:10:23.078 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:10:23.078 -07 000000478 INF: FPGA: Recv YRDPOS 137977
17-03-17 23:10:23.088 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:10:23.088 -07 000000627 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:10:23.108 -07 000000627 INF: Y Motor: After move to 67.382607, error = -0.011024, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:10:23.108 -07 000000627 INF: Y Motor: Position error after settling (table move) = -23 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:10:23.108 -07 000000627 INF: Y Motor: Moved to 67.3716 after 1447 ms (table move)
17-03-17 23:10:23.108 -07 000000415 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137775 mm (DAC = 30097)
17-03-17 23:10:23.108 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:23.118 -07 000000409 INF: FPGA: Recv ZSGSRD 30742
17-03-17 23:10:23.118 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 23:10:23.118 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:23.118 -07 000000478 INF: FPGA: Recv ZSGSRD 30736
17-03-17 23:10:23.128 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:10:23.128 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:23.128 -07 000000448 INF: FPGA: Recv ZSGSRD 30738
17-03-17 23:10:23.138 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:23.138 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:23.138 -07 000000382 INF: FPGA: Recv ZSGSRD 30739
17-03-17 23:10:23.148 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:23.148 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:23.148 -07 000000429 INF: FPGA: Recv ZSGSRD 30738
17-03-17 23:10:23.158 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:23.158 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:23.158 -07 000000501 INF: FPGA: Recv ZSGSRD 30735
17-03-17 23:10:23.168 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:23.168 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:23.168 -07 000000475 INF: FPGA: Recv ZSGSRD 30736
17-03-17 23:10:23.178 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:23.178 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:23.178 -07 000000482 INF: FPGA: Recv ZSGSRD 30733
17-03-17 23:10:23.188 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:23.188 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:23.188 -07 000000541 INF: FPGA: Recv ZSGSRD 30735
17-03-17 23:10:23.198 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:23.198 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:23.198 -07 000000627 INF: FPGA: Recv ZSGSRD 30738
17-03-17 23:10:23.208 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:23.208 -07 000000415 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:10:23.208 -07 000000618 INF: FPGA: Recv ZPIEZORD 26679
17-03-17 23:10:23.218 -07 000000415 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:23.218 -07 000000415 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.593 V. Piezo Error = -8.9 V.
17-03-17 23:10:23.218 -07 000000415 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.8 um, Read 10 ADC samples: Avg = 30737 (-137.0 uncal um), Error = 0.8 uncal um, Median = 30737 (-137.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30733 (-137.0 uncal um), Max = 30742 (-137.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:10:23.218 -07 000000415 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30737, posNoise = 5, negNoise = 4
17-03-17 23:10:23.218 -07 000000415 INF: Z Motor: After move to -0.137775, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:10:23.218 -07 000000415 INF: Z Motor: Settle wait time = 1449 ms, measure time = 102 ms (allowed 150 ms), total time = 1551 ms
17-03-17 23:10:23.218 -07 000000415 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 23:10:23.268 -07 000000415 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-17 23:10:23.268 -07 000000415 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:10:23.268 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:10:23.268 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:10:23.268 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:10:23.268 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:10:23.268 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:10:23.268 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:10:23.268 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:10:23.268 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:10:23.278 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:10:23.278 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:10:23.288 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 23:10:23.288 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 23:10:23.288 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:10:23.338 -07 000000551 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:10:23.538 -07 000000409 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:10:23.538 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:10:23.538 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:10:23.538 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-17 23:10:23.568 -07 000000429 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:10:23.578 -07 000000486 INF: FPGA: Recv CAMSNAP
17-03-17 23:10:23.578 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 285 ms overall
17-03-17 23:10:23.658 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 23:10:23.658 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:10:23.668 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:10:23.668 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 23:10:23.678 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:10:23.678 -07 000000547 INF: Autofocus start
17-03-17 23:10:23.678 -07 000000547 INF: MeasureProfile start
17-03-17 23:10:23.678 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:10:23.688 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:10:23.688 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:10:23.688 -07 000000547 INF: MeasureProfile done
17-03-17 23:10:23.688 -07 000000547 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 23:10:23.688 -07 000000547 INF: Autofocus finished
17-03-17 23:10:23.888 -07 000000593 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:10:23.888 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:10:23.888 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37158203125, Z-position -0.137784360612442. ----------
17-03-17 23:10:23.888 -07 000000610 INF: Cycle	72	Tile	10	Exposure Settings		A	468	G	225	T	225	C	468
17-03-17 23:10:23.898 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28592, sync = True, waitForSettling = True)
17-03-17 23:10:23.898 -07 000000610 INF: Z Motor: Moving to -0.130886 mm, started at -0.137784 mm, distance = 6.90 um
17-03-17 23:10:23.898 -07 000000610 INF: FPGA: Xmit ZDACW 28592\n [Z Motor]
17-03-17 23:10:23.898 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 23:10:23.908 -07 000000610 INF: FPGA: 'ZDACW 28592' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:10:23.908 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:10:23.908 -07 000000618 INF: FPGA: Recv ZDACR 28592
17-03-17 23:10:23.918 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:23.918 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:10:24.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:24.068 -07 000000502 INF: FPGA: Recv ZSGSRD 29663
17-03-17 23:10:24.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:10:24.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:24.078 -07 000000429 INF: FPGA: Recv ZSGSRD 29664
17-03-17 23:10:24.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:24.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:24.088 -07 000000486 INF: FPGA: Recv ZSGSRD 29669
17-03-17 23:10:24.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:24.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:24.098 -07 000000551 INF: FPGA: Recv ZSGSRD 29662
17-03-17 23:10:24.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:24.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:24.108 -07 000000478 INF: FPGA: Recv ZSGSRD 29667
17-03-17 23:10:24.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:24.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:24.118 -07 000000448 INF: FPGA: Recv ZSGSRD 29664
17-03-17 23:10:24.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:24.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:24.128 -07 000000382 INF: FPGA: Recv ZSGSRD 29659
17-03-17 23:10:24.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:24.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:24.138 -07 000000475 INF: FPGA: Recv ZSGSRD 29668
17-03-17 23:10:24.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:24.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:24.148 -07 000000576 INF: FPGA: Recv ZSGSRD 29664
17-03-17 23:10:24.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:24.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:24.158 -07 000000593 INF: FPGA: Recv ZSGSRD 29667
17-03-17 23:10:24.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:24.168 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:10:24.168 -07 000000561 INF: FPGA: Recv ZPIEZORD 25305
17-03-17 23:10:24.178 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:24.178 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.363 V. Piezo Error = -9.6 V.
17-03-17 23:10:24.178 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.9 um, Read 10 ADC samples: Avg = 29665 (-130.1 uncal um), Error = 0.8 uncal um, Median = 29664 (-130.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29659 (-130.1 uncal um), Max = 29669 (-130.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:10:24.178 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29665, posNoise = 4, negNoise = 6
17-03-17 23:10:24.178 -07 000000610 INF: Z Motor: After move to -0.130886, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:10:24.178 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 23:10:24.178 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:10:24.178 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:10:24.178 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:10:24.178 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:10:24.178 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:10:24.178 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:10:24.178 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:10:24.178 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:10:24.178 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:10:24.178 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:10:24.178 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:10:24.178 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:10:24.188 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:10:24.188 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:10:24.188 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:10:24.188 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:10:24.188 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 23:10:24.188 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 23:10:24.198 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 23:10:24.198 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:10:24.198 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 468 468 225 225 28769 150\n [Camera]
17-03-17 23:10:24.398 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:10:24.868 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 660
17-03-17 23:10:24.868 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 660
17-03-17 23:10:24.868 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:10:24.868 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:10:24.868 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 23:10:24.868 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 660
17-03-17 23:10:24.868 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 660
17-03-17 23:10:24.868 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:10:24.868 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:10:24.868 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-17 23:10:25.058 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28769 853
17-03-17 23:10:25.208 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1008
17-03-17 23:10:25.218 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 72, FrontChillerTemperature: 4.014009,
17-03-17 23:10:25.248 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 23:10:25.248 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 23:10:25.248 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:10:25.248 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 23:10:25.248 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 23:10:25.248 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:10:25.258 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:10:25.258 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 23:10:25.258 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:10:25.258 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 23:10:25.428 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1228
17-03-17 23:10:25.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1228
17-03-17 23:10:25.428 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:10:25.428 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:10:25.428 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-17 23:10:25.438 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1228
17-03-17 23:10:25.438 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1228
17-03-17 23:10:25.438 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:10:25.438 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:10:25.438 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 23:10:25.618 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP 1421
17-03-17 23:10:25.628 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:10:25.628 -07 000000610 INF: FPGA: 'CAMDBLSNAP 468 468 225 225 28769 150' command took 2 ms to send, 1420 ms to get response, and 1427 ms overall
17-03-17 23:10:25.628 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:10:25.628 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37158203125, Z-Position -0.130897605196474. ------
17-03-17 23:10:25.628 -07 000000475 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13734 mm
17-03-17 23:10:25.628 -07 000000475 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:10:25.628 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:10:25.638 -07 000000547 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 23:10:25.638 -07 000000547 INF: Y Motor: Moving to 68.2126 mm, started at 67.3716 mm, delta = 0.8410 mm
17-03-17 23:10:25.638 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:10:25.638 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:10:25.638 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 23:10:25.638 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 30002, sync = True, waitForSettling = False)
17-03-17 23:10:25.638 -07 000000551 INF: Z Motor: Moving to -0.137340 mm, started at -0.130898 mm, distance = -6.44 um
17-03-17 23:10:25.638 -07 000000478 INF: FPGA: Recv YRDPOS 137978
17-03-17 23:10:25.648 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:25.648 -07 000000547 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:10:25.648 -07 000000551 INF: FPGA: Xmit ZDACW 30002\n [Z Motor]
17-03-17 23:10:25.648 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 23:10:25.648 -07 000000547 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:10:25.648 -07 000000547 INF: Y Motor: Moving 1345 steps-23
17-03-17 23:10:25.658 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:10:25.658 -07 000000551 INF: FPGA: 'ZDACW 30002' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 23:10:25.668 -07 000000547 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:10:25.678 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:10:25.678 -07 000000382 INF: FPGA: Recv ZDACR 30002
17-03-17 23:10:25.688 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:10:25.688 -07 000000551 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 23:10:25.818 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 23:10:25.818 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 23:10:25.818 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:10:25.818 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 23:10:25.818 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 23:10:25.818 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:10:25.828 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:10:25.828 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 23:10:25.828 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 23:10:25.828 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 23:10:25.858 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:10:25.858 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-17 23:10:26.038 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 23:10:26.038 -07 000000547 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 23:10:26.078 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:10:26.088 -07 000000593 INF: FPGA: Recv YRDPOS 139683
17-03-17 23:10:26.088 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 23:10:26.088 -07 000000547 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:10:26.088 -07 000000547 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 23:10:26.088 -07 000000547 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.841 mm, average velocity = 2.135 mm/sec
17-03-17 23:10:27.038 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:10:27.038 -07 000000415 INF: FPGA: Recv YRDPOS 139683
17-03-17 23:10:27.038 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:10:27.038 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 71. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1150, R2=1196, Total=2346. Warn if over 250 bubbles per interval.
17-03-17 23:10:27.048 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:27.048 -07 000000547 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:10:27.068 -07 000000547 INF: Y Motor: After move to 68.212608, error = -0.008018, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:10:27.068 -07 000000547 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:10:27.068 -07 000000547 INF: Y Motor: Moved to 68.2046 after 1434 ms (table move)
17-03-17 23:10:27.068 -07 000000475 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137340 mm (DAC = 30002)
17-03-17 23:10:27.068 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:27.078 -07 000000501 INF: FPGA: Recv ZSGSRD 30677
17-03-17 23:10:27.078 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 23:10:27.078 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:27.078 -07 000000502 INF: FPGA: Recv ZSGSRD 30673
17-03-17 23:10:27.088 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:10:27.088 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:27.088 -07 000000482 INF: FPGA: Recv ZSGSRD 30672
17-03-17 23:10:27.098 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:27.098 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:27.098 -07 000000627 INF: FPGA: Recv ZSGSRD 30674
17-03-17 23:10:27.108 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:27.108 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:27.108 -07 000000547 INF: FPGA: Recv ZSGSRD 30664
17-03-17 23:10:27.118 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:27.118 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:27.118 -07 000000576 INF: FPGA: Recv ZSGSRD 30668
17-03-17 23:10:27.128 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:27.128 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:27.128 -07 000000561 INF: FPGA: Recv ZSGSRD 30668
17-03-17 23:10:27.138 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:27.138 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:27.138 -07 000000409 INF: FPGA: Recv ZSGSRD 30663
17-03-17 23:10:27.148 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:27.148 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:27.148 -07 000000382 INF: FPGA: Recv ZSGSRD 30666
17-03-17 23:10:27.158 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:27.158 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:27.158 -07 000000618 INF: FPGA: Recv ZSGSRD 30671
17-03-17 23:10:27.168 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:27.168 -07 000000475 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:10:27.168 -07 000000501 INF: FPGA: Recv ZPIEZORD 26610
17-03-17 23:10:27.178 -07 000000475 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:27.178 -07 000000475 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.578 V. Piezo Error = -8.9 V.
17-03-17 23:10:27.178 -07 000000475 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.3 um, Read 10 ADC samples: Avg = 30670 (-136.6 uncal um), Error = 0.8 uncal um, Median = 30670 (-136.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30663 (-136.5 uncal um), Max = 30677 (-136.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 23:10:27.178 -07 000000475 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30670, posNoise = 7, negNoise = 7
17-03-17 23:10:27.178 -07 000000475 INF: Z Motor: After move to -0.137340, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:10:27.178 -07 000000475 INF: Z Motor: Settle wait time = 1436 ms, measure time = 104 ms (allowed 150 ms), total time = 1540 ms
17-03-17 23:10:27.178 -07 000000475 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 23:10:27.228 -07 000000475 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1592 ms
17-03-17 23:10:27.228 -07 000000475 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:10:27.228 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:10:27.228 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:10:27.228 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:10:27.228 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:10:27.228 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:10:27.228 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:10:27.228 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:10:27.228 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:10:27.238 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:10:27.238 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:10:27.238 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 23:10:27.238 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 23:10:27.248 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:10:27.288 -07 000000415 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:10:27.488 -07 000000409 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:10:27.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:10:27.488 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:10:27.488 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) start.
17-03-17 23:10:27.528 -07 000000501 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:10:27.528 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-17 23:10:27.528 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 23:10:27.608 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 23:10:27.608 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:10:27.608 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 23:10:27.608 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 23:10:27.628 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:10:27.628 -07 000000618 INF: Autofocus start
17-03-17 23:10:27.628 -07 000000618 INF: MeasureProfile start
17-03-17 23:10:27.628 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:10:27.638 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:10:27.638 -07 000000541 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:10:27.638 -07 000000618 INF: MeasureProfile done
17-03-17 23:10:27.638 -07 000000618 INF: X=-80  Z correction [um]=-0.3928285
17-03-17 23:10:27.638 -07 000000618 INF: Autofocus finished
17-03-17 23:10:27.838 -07 000000409 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:10:27.838 -07 000000541 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:10:27.838 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20458984375, Z-position -0.137353938398944. ----------
17-03-17 23:10:27.838 -07 000000610 INF: Cycle	72	Tile	11	Exposure Settings		A	468	G	225	T	225	C	468
17-03-17 23:10:27.848 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28428, sync = True, waitForSettling = True)
17-03-17 23:10:27.848 -07 000000610 INF: Z Motor: Moving to -0.130135 mm, started at -0.137354 mm, distance = 7.22 um
17-03-17 23:10:27.848 -07 000000610 INF: FPGA: Xmit ZDACW 28428\n [Z Motor]
17-03-17 23:10:27.848 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 23:10:27.858 -07 000000610 INF: FPGA: 'ZDACW 28428' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:27.858 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:10:27.858 -07 000000448 INF: FPGA: Recv ZDACR 28428
17-03-17 23:10:27.868 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:27.868 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:10:28.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:28.018 -07 000000478 INF: FPGA: Recv ZSGSRD 29550
17-03-17 23:10:28.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:10:28.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:28.028 -07 000000462 INF: FPGA: Recv ZSGSRD 29551
17-03-17 23:10:28.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:28.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:28.038 -07 000000482 INF: FPGA: Recv ZSGSRD 29546
17-03-17 23:10:28.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:28.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:28.048 -07 000000618 INF: FPGA: Recv ZSGSRD 29547
17-03-17 23:10:28.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:28.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:28.058 -07 000000501 INF: FPGA: Recv ZSGSRD 29554
17-03-17 23:10:28.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:28.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:28.068 -07 000000429 INF: FPGA: Recv ZSGSRD 29550
17-03-17 23:10:28.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:28.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:28.078 -07 000000551 INF: FPGA: Recv ZSGSRD 29545
17-03-17 23:10:28.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:28.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:28.088 -07 000000409 INF: FPGA: Recv ZSGSRD 29546
17-03-17 23:10:28.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:28.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:28.098 -07 000000541 INF: FPGA: Recv ZSGSRD 29553
17-03-17 23:10:28.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:28.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:28.108 -07 000000482 INF: FPGA: Recv ZSGSRD 29541
17-03-17 23:10:28.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:28.118 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:10:28.118 -07 000000448 INF: FPGA: Recv ZPIEZORD 25160
17-03-17 23:10:28.128 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:28.128 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.338 V. Piezo Error = -9.6 V.
17-03-17 23:10:28.128 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.1 um, Read 10 ADC samples: Avg = 29548 (-129.4 uncal um), Error = 0.8 uncal um, Median = 29548 (-129.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29541 (-129.3 uncal um), Max = 29554 (-129.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 23:10:28.128 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29548, posNoise = 6, negNoise = 7
17-03-17 23:10:28.128 -07 000000610 INF: Z Motor: After move to -0.130135, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:10:28.128 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 23:10:28.128 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:10:28.128 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:10:28.128 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:10:28.128 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:10:28.128 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:10:28.128 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:10:28.128 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:10:28.128 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:10:28.128 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:10:28.128 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:10:28.128 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:10:28.128 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:10:28.128 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:10:28.128 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:10:28.128 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:10:28.128 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:10:28.138 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 23:10:28.138 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 23:10:28.138 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 23:10:28.148 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:10:28.148 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 468 468 225 225 28605 150\n [Camera]
17-03-17 23:10:28.348 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:10:28.808 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 660
17-03-17 23:10:28.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 660
17-03-17 23:10:28.818 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:10:28.818 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:10:28.818 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1428998304, 0x0, 391868352) start.
17-03-17 23:10:28.818 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 660
17-03-17 23:10:28.818 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 660
17-03-17 23:10:28.818 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:10:28.818 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:10:28.818 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1464420568, 0x0, 418435064) start.
17-03-17 23:10:29.008 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28605 853
17-03-17 23:10:29.158 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1003
17-03-17 23:10:29.198 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1464420568, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 23:10:29.198 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 23:10:29.198 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:10:29.198 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:10:29.198 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1428998304, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 23:10:29.198 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 23:10:29.198 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:10:29.198 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:10:29.198 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 23:10:29.208 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 23:10:29.378 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1228
17-03-17 23:10:29.378 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1228
17-03-17 23:10:29.388 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:10:29.388 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1228
17-03-17 23:10:29.388 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:10:29.388 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 23:10:29.388 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1228
17-03-17 23:10:29.388 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:10:29.388 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:10:29.388 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 23:10:29.578 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1424
17-03-17 23:10:29.578 -07 000000409 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:10:29.578 -07 000000610 INF: FPGA: 'CAMDBLSNAP 468 468 225 225 28605 150' command took 2 ms to send, 1423 ms to get response, and 1431 ms overall
17-03-17 23:10:29.578 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:10:29.578 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20458984375, Z-Position -0.130145972375888. ------
17-03-17 23:10:29.578 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:10:29.578 -07 000000415 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13679 mm
17-03-17 23:10:29.578 -07 000000415 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:10:29.588 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:10:29.588 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 23:10:29.588 -07 000000561 INF: Y Motor: Moving to 69.0426 mm, started at 68.2046 mm, delta = 0.8380 mm
17-03-17 23:10:29.588 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:10:29.588 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 23:10:29.588 -07 000000541 INF: Z Motor: Entering MoveAbsStepped (DAC = 29881, sync = True, waitForSettling = False)
17-03-17 23:10:29.588 -07 000000541 INF: Z Motor: Moving to -0.136786 mm, started at -0.130146 mm, distance = -6.64 um
17-03-17 23:10:29.588 -07 000000551 INF: FPGA: Recv YRDPOS 139683
17-03-17 23:10:29.598 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:10:29.598 -07 000000561 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:10:29.598 -07 000000561 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:10:29.598 -07 000000561 INF: Y Motor: Moving 1341 steps-16
17-03-17 23:10:29.598 -07 000000541 INF: FPGA: Xmit ZDACW 29881\n [Z Motor]
17-03-17 23:10:29.598 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 23:10:29.608 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:10:29.608 -07 000000541 INF: FPGA: 'ZDACW 29881' command took 2 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 23:10:29.618 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:10:29.628 -07 000000541 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:10:29.628 -07 000000618 INF: FPGA: Recv ZDACR 29881
17-03-17 23:10:29.638 -07 000000541 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:10:29.638 -07 000000541 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-17 23:10:29.788 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 407 ms.
17-03-17 23:10:29.788 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 23:10:29.788 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:10:29.788 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 406 ms.
17-03-17 23:10:29.788 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 23:10:29.788 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:10:29.798 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:10:29.798 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 23:10:29.798 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 415 ms.
17-03-17 23:10:29.798 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-17 23:10:29.808 -07 000000576 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:10:29.808 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 223 ms overall
17-03-17 23:10:29.988 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 23:10:29.988 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 23:10:30.028 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:10:30.038 -07 000000482 INF: FPGA: Recv YRDPOS 141366
17-03-17 23:10:30.038 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 23:10:30.038 -07 000000561 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:10:30.038 -07 000000561 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-17 23:10:30.038 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.838 mm, average velocity = 2.106 mm/sec
17-03-17 23:10:30.578 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 72, FrontChillerTemperature: 3.994908,
17-03-17 23:10:30.988 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:10:30.988 -07 000000576 INF: FPGA: Recv YRDPOS 141366
17-03-17 23:10:30.998 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:10:30.998 -07 000000561 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:10:31.018 -07 000000561 INF: Y Motor: After move to 69.042610, error = -0.016243, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:10:31.018 -07 000000561 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:10:31.018 -07 000000561 INF: Y Motor: Moved to 69.0264 after 1435 ms (table move)
17-03-17 23:10:31.018 -07 000000415 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136786 mm (DAC = 29881)
17-03-17 23:10:31.028 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:31.028 -07 000000623 INF: FPGA: Recv ZSGSRD 30578
17-03-17 23:10:31.038 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:10:31.038 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:31.038 -07 000000541 INF: FPGA: Recv ZSGSRD 30585
17-03-17 23:10:31.048 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:31.048 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:31.048 -07 000000561 INF: FPGA: Recv ZSGSRD 30588
17-03-17 23:10:31.058 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:31.058 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:31.058 -07 000000502 INF: FPGA: Recv ZSGSRD 30585
17-03-17 23:10:31.068 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:31.068 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:31.068 -07 000000627 INF: FPGA: Recv ZSGSRD 30580
17-03-17 23:10:31.078 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:31.078 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:31.078 -07 000000551 INF: FPGA: Recv ZSGSRD 30583
17-03-17 23:10:31.088 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:31.088 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:31.088 -07 000000576 INF: FPGA: Recv ZSGSRD 30582
17-03-17 23:10:31.098 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:31.098 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:31.098 -07 000000429 INF: FPGA: Recv ZSGSRD 30580
17-03-17 23:10:31.108 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:31.108 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:31.108 -07 000000478 INF: FPGA: Recv ZSGSRD 30579
17-03-17 23:10:31.118 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:31.118 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:31.118 -07 000000482 INF: FPGA: Recv ZSGSRD 30582
17-03-17 23:10:31.128 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:31.128 -07 000000415 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:10:31.128 -07 000000593 INF: FPGA: Recv ZPIEZORD 26531
17-03-17 23:10:31.138 -07 000000415 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:31.138 -07 000000415 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.560 V. Piezo Error = -8.9 V.
17-03-17 23:10:31.138 -07 000000415 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.8 um, Read 10 ADC samples: Avg = 30582 (-136.0 uncal um), Error = 0.8 uncal um, Median = 30582 (-136.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30578 (-136.0 uncal um), Max = 30588 (-136.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:10:31.138 -07 000000415 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30582, posNoise = 6, negNoise = 4
17-03-17 23:10:31.138 -07 000000415 INF: Z Motor: After move to -0.136786, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:10:31.138 -07 000000415 INF: Z Motor: Settle wait time = 1438 ms, measure time = 110 ms (allowed 150 ms), total time = 1548 ms
17-03-17 23:10:31.138 -07 000000415 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 23:10:31.178 -07 000000415 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-17 23:10:31.178 -07 000000415 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:10:31.178 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:10:31.178 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:10:31.178 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:10:31.178 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:10:31.178 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:10:31.178 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:10:31.178 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:10:31.178 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:10:31.188 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:10:31.188 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:10:31.198 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 23:10:31.198 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 23:10:31.198 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:10:31.248 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:10:31.438 -07 000000486 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:10:31.438 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:10:31.448 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:10:31.448 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2218332320, 0x0, 559484976) start.
17-03-17 23:10:31.478 -07 000000409 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:10:31.478 -07 000000551 INF: FPGA: Recv CAMSNAP
17-03-17 23:10:31.488 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 23:10:31.568 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2218332320, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 23:10:31.568 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:10:31.578 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 23:10:31.578 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 23:10:31.588 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:10:31.588 -07 000000501 INF: Autofocus start
17-03-17 23:10:31.588 -07 000000501 INF: MeasureProfile start
17-03-17 23:10:31.588 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:10:31.598 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:10:31.598 -07 000000541 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:10:31.598 -07 000000501 INF: MeasureProfile done
17-03-17 23:10:31.598 -07 000000501 INF: X=-2  Z correction [um]=-0.01313862
17-03-17 23:10:31.598 -07 000000501 INF: Autofocus finished
17-03-17 23:10:31.798 -07 000000478 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:10:31.798 -07 000000541 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:10:31.808 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.0263671875, Z-position -0.136788607730469. ----------
17-03-17 23:10:31.808 -07 000000610 INF: Cycle	72	Tile	12	Exposure Settings		A	468	G	225	T	225	C	468
17-03-17 23:10:31.808 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28390, sync = True, waitForSettling = True)
17-03-17 23:10:31.808 -07 000000610 INF: Z Motor: Moving to -0.129961 mm, started at -0.136789 mm, distance = 6.83 um
17-03-17 23:10:31.808 -07 000000610 INF: FPGA: Xmit ZDACW 28390\n [Z Motor]
17-03-17 23:10:31.808 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 23:10:31.818 -07 000000610 INF: FPGA: 'ZDACW 28390' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:10:31.818 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:10:31.818 -07 000000618 INF: FPGA: Recv ZDACR 28390
17-03-17 23:10:31.828 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:31.828 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:10:31.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:31.978 -07 000000478 INF: FPGA: Recv ZSGSRD 29521
17-03-17 23:10:31.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:31.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:31.988 -07 000000462 INF: FPGA: Recv ZSGSRD 29516
17-03-17 23:10:31.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:31.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:31.998 -07 000000502 INF: FPGA: Recv ZSGSRD 29519
17-03-17 23:10:32.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:32.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:32.008 -07 000000501 INF: FPGA: Recv ZSGSRD 29523
17-03-17 23:10:32.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:32.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:32.018 -07 000000482 INF: FPGA: Recv ZSGSRD 29521
17-03-17 23:10:32.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:32.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:32.028 -07 000000478 INF: FPGA: Recv ZSGSRD 29523
17-03-17 23:10:32.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:32.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:32.038 -07 000000409 INF: FPGA: Recv ZSGSRD 29519
17-03-17 23:10:32.038 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:10:32.038 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 71. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1150, R2=1196, Total=2346. Warn if over 250 bubbles per interval.
17-03-17 23:10:32.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:32.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:32.048 -07 000000501 INF: FPGA: Recv ZSGSRD 29521
17-03-17 23:10:32.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:32.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:32.058 -07 000000415 INF: FPGA: Recv ZSGSRD 29514
17-03-17 23:10:32.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:32.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:32.068 -07 000000382 INF: FPGA: Recv ZSGSRD 29520
17-03-17 23:10:32.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:32.078 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:10:32.078 -07 000000429 INF: FPGA: Recv ZPIEZORD 25146
17-03-17 23:10:32.088 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:32.088 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.332 V. Piezo Error = -9.6 V.
17-03-17 23:10:32.088 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.0 um, Read 10 ADC samples: Avg = 29520 (-129.2 uncal um), Error = 0.8 uncal um, Median = 29520 (-129.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29514 (-129.1 uncal um), Max = 29523 (-129.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:10:32.088 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29520, posNoise = 3, negNoise = 6
17-03-17 23:10:32.088 -07 000000610 INF: Z Motor: After move to -0.129961, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:10:32.088 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 23:10:32.088 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:10:32.088 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:10:32.088 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:10:32.088 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:10:32.088 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:10:32.088 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:10:32.088 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:10:32.088 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:10:32.088 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:10:32.088 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:10:32.088 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:10:32.088 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:10:32.098 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 23:10:32.098 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:10:32.098 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:10:32.098 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:10:32.108 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 23:10:32.108 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 23:10:32.108 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 23:10:32.108 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:10:32.108 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 468 468 225 225 28567 150\n [Camera]
17-03-17 23:10:32.308 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:10:32.778 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 664
17-03-17 23:10:32.778 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 664
17-03-17 23:10:32.778 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:10:32.778 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:10:32.778 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2233008400, 0x0, 391868352) start.
17-03-17 23:10:32.778 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 664
17-03-17 23:10:32.778 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 664
17-03-17 23:10:32.778 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:10:32.778 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:10:32.778 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 23:10:32.968 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28567 853
17-03-17 23:10:33.118 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1003
17-03-17 23:10:33.158 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2233008400, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 23:10:33.158 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 23:10:33.158 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:10:33.168 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 23:10:33.168 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 23:10:33.168 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:10:33.168 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:10:33.168 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 23:10:33.168 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:10:33.178 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 23:10:33.338 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1228
17-03-17 23:10:33.338 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1228
17-03-17 23:10:33.338 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:10:33.338 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:10:33.338 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 23:10:33.348 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1228
17-03-17 23:10:33.348 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1228
17-03-17 23:10:33.348 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:10:33.348 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:10:33.348 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 2369425112, 0x0, 418435064) start.
17-03-17 23:10:33.528 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP 1420
17-03-17 23:10:33.538 -07 000000475 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:10:33.538 -07 000000610 INF: FPGA: 'CAMDBLSNAP 468 468 225 225 28567 150' command took 2 ms to send, 1420 ms to get response, and 1427 ms overall
17-03-17 23:10:33.538 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:10:33.538 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.0263671875, Z-Position -0.129966094435918. ------
17-03-17 23:10:33.538 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:10:33.538 -07 000000448 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13634 mm
17-03-17 23:10:33.538 -07 000000448 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:10:33.538 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:10:33.548 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:10:33.548 -07 000000415 INF: Z Motor: Entering MoveAbsStepped (DAC = 29784, sync = True, waitForSettling = False)
17-03-17 23:10:33.548 -07 000000415 INF: Z Motor: Moving to -0.136342 mm, started at -0.129966 mm, distance = -6.38 um
17-03-17 23:10:33.548 -07 000000551 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:10:33.548 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 23:10:33.548 -07 000000541 INF: Y Motor: Moving to 69.8726 mm, started at 69.0264 mm, delta = 0.8462 mm
17-03-17 23:10:33.558 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:10:33.558 -07 000000486 INF: FPGA: Recv YRDPOS 141367
17-03-17 23:10:33.568 -07 000000415 INF: FPGA: Xmit ZDACW 29784\n [Z Motor]
17-03-17 23:10:33.568 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 23:10:33.568 -07 000000541 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:10:33.568 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 23:10:33.568 -07 000000541 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:10:33.568 -07 000000541 INF: Y Motor: Moving 1353 steps-33
17-03-17 23:10:33.578 -07 000000415 INF: FPGA: 'ZDACW 29784' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:10:33.578 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:10:33.588 -07 000000415 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:10:33.588 -07 000000475 INF: FPGA: Recv ZDACR 29784
17-03-17 23:10:33.598 -07 000000415 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:10:33.598 -07 000000415 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 23:10:33.738 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 23:10:33.738 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 2369425112, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 23:10:33.738 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 23:10:33.738 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:10:33.738 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 23:10:33.738 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:10:33.738 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:10:33.748 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 23:10:33.748 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 23:10:33.748 -07 000000486 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:10:33.748 -07 000000551 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-17 23:10:33.748 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 23:10:33.948 -07 000000486 INF: FPGA: Recv YMVTILE
17-03-17 23:10:33.948 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-17 23:10:33.998 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:10:33.998 -07 000000501 INF: FPGA: Recv YRDPOS 143079
17-03-17 23:10:34.008 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:10:34.008 -07 000000541 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:10:34.008 -07 000000541 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 23:10:34.008 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.846 mm, average velocity = 2.198 mm/sec
17-03-17 23:10:34.958 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:10:34.958 -07 000000462 INF: FPGA: Recv YRDPOS 143079
17-03-17 23:10:34.968 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:10:34.968 -07 000000541 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:10:34.988 -07 000000541 INF: Y Motor: After move to 69.872612, error = -0.009819, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:10:34.988 -07 000000541 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:10:34.988 -07 000000541 INF: Y Motor: Moved to 69.8628 after 1443 ms (table move)
17-03-17 23:10:34.988 -07 000000448 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136342 mm (DAC = 29784)
17-03-17 23:10:34.988 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:34.998 -07 000000618 INF: FPGA: Recv ZSGSRD 30518
17-03-17 23:10:35.008 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:10:35.008 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:35.008 -07 000000501 INF: FPGA: Recv ZSGSRD 30520
17-03-17 23:10:35.018 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:35.018 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:35.018 -07 000000409 INF: FPGA: Recv ZSGSRD 30518
17-03-17 23:10:35.028 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:35.028 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:35.028 -07 000000462 INF: FPGA: Recv ZSGSRD 30511
17-03-17 23:10:35.038 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:35.038 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:35.038 -07 000000576 INF: FPGA: Recv ZSGSRD 30512
17-03-17 23:10:35.048 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:35.048 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:35.048 -07 000000502 INF: FPGA: Recv ZSGSRD 30511
17-03-17 23:10:35.058 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:35.058 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:35.058 -07 000000478 INF: FPGA: Recv ZSGSRD 30510
17-03-17 23:10:35.068 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:35.068 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:35.068 -07 000000486 INF: FPGA: Recv ZSGSRD 30508
17-03-17 23:10:35.078 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:35.078 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:35.078 -07 000000593 INF: FPGA: Recv ZSGSRD 30517
17-03-17 23:10:35.088 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:35.088 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:35.088 -07 000000576 INF: FPGA: Recv ZSGSRD 30515
17-03-17 23:10:35.098 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:35.098 -07 000000448 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:10:35.098 -07 000000502 INF: FPGA: Recv ZPIEZORD 26447
17-03-17 23:10:35.108 -07 000000448 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:35.108 -07 000000448 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.4 V, since DAC is at 4.545 V. Piezo Error = -8.9 V.
17-03-17 23:10:35.108 -07 000000448 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.3 um, Read 10 ADC samples: Avg = 30514 (-135.6 uncal um), Error = 0.8 uncal um, Median = 30514 (-135.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30508 (-135.5 uncal um), Max = 30520 (-135.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:10:35.108 -07 000000448 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30514, posNoise = 6, negNoise = 6
17-03-17 23:10:35.108 -07 000000448 INF: Z Motor: After move to -0.136342, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:10:35.108 -07 000000448 INF: Z Motor: Settle wait time = 1449 ms, measure time = 111 ms (allowed 150 ms), total time = 1560 ms
17-03-17 23:10:35.108 -07 000000448 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 23:10:35.148 -07 000000448 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1604 ms
17-03-17 23:10:35.148 -07 000000448 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:10:35.148 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:10:35.148 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:10:35.148 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:10:35.148 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:10:35.148 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:10:35.148 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:10:35.148 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:10:35.148 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:10:35.158 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 23:10:35.158 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:10:35.168 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 23:10:35.168 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 23:10:35.168 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:10:35.218 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:10:35.418 -07 000000623 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:10:35.418 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:10:35.418 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:10:35.418 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2268430664, 0x0, 559484976) start.
17-03-17 23:10:35.458 -07 000000501 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:10:35.458 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 23:10:35.458 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 284 ms to get response, and 287 ms overall
17-03-17 23:10:35.538 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2268430664, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 23:10:35.538 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:10:35.538 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 23:10:35.538 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 23:10:35.558 -07 000000618 INF: Autofocus start
17-03-17 23:10:35.558 -07 000000618 INF: MeasureProfile start
17-03-17 23:10:35.558 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:10:35.558 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:10:35.568 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:10:35.568 -07 000000551 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:10:35.568 -07 000000618 INF: MeasureProfile done
17-03-17 23:10:35.568 -07 000000618 INF: X=0  Z correction [um]=-0.02394831
17-03-17 23:10:35.568 -07 000000618 INF: Autofocus finished
17-03-17 23:10:35.768 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:10:35.768 -07 000000551 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:10:35.768 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86279296875, Z-position -0.136351761304829. ----------
17-03-17 23:10:35.778 -07 000000610 INF: Cycle	72	Tile	13	Exposure Settings		A	468	G	225	T	225	C	468
17-03-17 23:10:35.778 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28291, sync = True, waitForSettling = True)
17-03-17 23:10:35.778 -07 000000610 INF: Z Motor: Moving to -0.129508 mm, started at -0.136352 mm, distance = 6.84 um
17-03-17 23:10:35.778 -07 000000610 INF: FPGA: Xmit ZDACW 28291\n [Z Motor]
17-03-17 23:10:35.778 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 23:10:35.788 -07 000000610 INF: FPGA: 'ZDACW 28291' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:10:35.788 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:10:35.788 -07 000000429 INF: FPGA: Recv ZDACR 28291
17-03-17 23:10:35.798 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:35.798 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:10:35.938 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 72, FrontChillerTemperature: 4.003063,
17-03-17 23:10:35.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:35.948 -07 000000415 INF: FPGA: Recv ZSGSRD 29451
17-03-17 23:10:35.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:35.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:35.968 -07 000000547 INF: FPGA: Recv ZSGSRD 29450
17-03-17 23:10:35.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:10:35.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:35.998 -07 000000502 INF: FPGA: Recv ZSGSRD 29445
17-03-17 23:10:36.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:10:36.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:36.018 -07 000000593 INF: FPGA: Recv ZSGSRD 29456
17-03-17 23:10:36.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:10:36.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:36.028 -07 000000502 INF: FPGA: Recv ZSGSRD 29443
17-03-17 23:10:36.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:36.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:36.038 -07 000000448 INF: FPGA: Recv ZSGSRD 29451
17-03-17 23:10:36.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:36.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:36.048 -07 000000627 INF: FPGA: Recv ZSGSRD 29445
17-03-17 23:10:36.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:36.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:36.058 -07 000000593 INF: FPGA: Recv ZSGSRD 29455
17-03-17 23:10:36.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:36.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:36.068 -07 000000448 INF: FPGA: Recv ZSGSRD 29452
17-03-17 23:10:36.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:36.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:36.078 -07 000000541 INF: FPGA: Recv ZSGSRD 29441
17-03-17 23:10:36.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:36.088 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:10:36.088 -07 000000593 INF: FPGA: Recv ZPIEZORD 25035
17-03-17 23:10:36.098 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:36.098 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.317 V. Piezo Error = -9.7 V.
17-03-17 23:10:36.098 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.5 um, Read 10 ADC samples: Avg = 29449 (-128.7 uncal um), Error = 0.8 uncal um, Median = 29450 (-128.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29441 (-128.7 uncal um), Max = 29456 (-128.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 23:10:36.098 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29449, posNoise = 7, negNoise = 8
17-03-17 23:10:36.098 -07 000000610 INF: Z Motor: After move to -0.129508, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:10:36.098 -07 000000610 INF: Z Motor: MoveAbsStepped took 317 ms)
17-03-17 23:10:36.098 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:10:36.098 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:10:36.098 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:10:36.098 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:10:36.098 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:10:36.098 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:10:36.098 -07 000000409 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:10:36.098 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:10:36.098 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 23:10:36.098 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:10:36.098 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:10:36.098 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:10:36.098 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:10:36.098 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:10:36.098 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:10:36.098 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:10:36.108 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 23:10:36.108 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:10:36.108 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 23:10:36.108 -07 000000409 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:10:36.118 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 468 468 225 225 28468 150\n [Camera]
17-03-17 23:10:36.318 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:10:36.788 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 660
17-03-17 23:10:36.788 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 660
17-03-17 23:10:36.788 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:10:36.788 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:10:36.788 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 23:10:36.788 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 660
17-03-17 23:10:36.788 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 660
17-03-17 23:10:36.788 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:10:36.788 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:10:36.788 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-17 23:10:36.978 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28468 853
17-03-17 23:10:37.038 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:10:37.038 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 71. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1150, R2=1196, Total=2346. Warn if over 250 bubbles per interval.
17-03-17 23:10:37.128 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1003
17-03-17 23:10:37.168 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 23:10:37.168 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 23:10:37.168 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 23:10:37.168 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:10:37.168 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 23:10:37.168 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:10:37.168 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:10:37.168 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 23:10:37.168 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 23:10:37.178 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 23:10:37.358 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1228
17-03-17 23:10:37.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1228
17-03-17 23:10:37.358 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:10:37.358 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:10:37.358 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start.
17-03-17 23:10:37.358 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1228
17-03-17 23:10:37.358 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1228
17-03-17 23:10:37.358 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:10:37.508 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:10:37.508 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 23:10:37.548 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP 1421
17-03-17 23:10:37.548 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:10:37.548 -07 000000610 INF: FPGA: 'CAMDBLSNAP 468 468 225 225 28468 150' command took 2 ms to send, 1422 ms to get response, and 1428 ms overall
17-03-17 23:10:37.548 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:10:37.548 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86279296875, Z-Position -0.129509975373853. ------
17-03-17 23:10:37.548 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:10:37.548 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13588 mm
17-03-17 23:10:37.548 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:10:37.558 -07 000000475 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 23:10:37.558 -07 000000475 INF: Y Motor: Moving to 70.7026 mm, started at 69.8628 mm, delta = 0.8398 mm
17-03-17 23:10:37.558 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:10:37.558 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:10:37.558 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 23:10:37.558 -07 000000541 INF: Z Motor: Entering MoveAbsStepped (DAC = 29683, sync = True, waitForSettling = False)
17-03-17 23:10:37.558 -07 000000541 INF: Z Motor: Moving to -0.135880 mm, started at -0.129510 mm, distance = -6.37 um
17-03-17 23:10:37.558 -07 000000593 INF: FPGA: Recv YRDPOS 143079
17-03-17 23:10:37.568 -07 000000448 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:10:37.568 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:10:37.568 -07 000000475 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:10:37.568 -07 000000475 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:10:37.568 -07 000000475 INF: Y Motor: Moving 1344 steps-20
17-03-17 23:10:37.578 -07 000000541 INF: FPGA: Xmit ZDACW 29683\n [Z Motor]
17-03-17 23:10:37.578 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 23:10:37.588 -07 000000475 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:10:37.588 -07 000000541 INF: FPGA: 'ZDACW 29683' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 23:10:37.598 -07 000000541 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:10:37.598 -07 000000593 INF: FPGA: Recv ZDACR 29683
17-03-17 23:10:37.608 -07 000000541 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:10:37.608 -07 000000541 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-17 23:10:37.758 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 405 ms.
17-03-17 23:10:37.758 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 23:10:37.758 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:10:37.768 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:10:37.768 -07 000000448 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 210 ms overall
17-03-17 23:10:37.768 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 23:10:37.768 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 23:10:37.888 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 23:10:37.888 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 23:10:37.888 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:10:37.888 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:10:37.898 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 540 ms.
17-03-17 23:10:37.958 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-17 23:10:37.958 -07 000000475 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 23:10:37.998 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:10:38.008 -07 000000551 INF: FPGA: Recv YRDPOS 144769
17-03-17 23:10:38.008 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 23:10:38.008 -07 000000475 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:10:38.008 -07 000000475 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 23:10:38.008 -07 000000475 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.840 mm, average velocity = 2.110 mm/sec
17-03-17 23:10:38.958 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:10:38.958 -07 000000501 INF: FPGA: Recv YRDPOS 144769
17-03-17 23:10:38.968 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:38.968 -07 000000475 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:10:38.988 -07 000000475 INF: Y Motor: After move to 70.702606, error = -0.014618, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:10:38.988 -07 000000475 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:10:38.988 -07 000000475 INF: Y Motor: Moved to 70.6880 after 1435 ms (table move)
17-03-17 23:10:38.988 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135880 mm (DAC = 29683)
17-03-17 23:10:38.988 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:38.998 -07 000000478 INF: FPGA: Recv ZSGSRD 30446
17-03-17 23:10:39.008 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:10:39.008 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:39.008 -07 000000618 INF: FPGA: Recv ZSGSRD 30442
17-03-17 23:10:39.018 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:39.018 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:39.018 -07 000000623 INF: FPGA: Recv ZSGSRD 30440
17-03-17 23:10:39.028 -07 000000576 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:39.028 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:39.028 -07 000000502 INF: FPGA: Recv ZSGSRD 30446
17-03-17 23:10:39.038 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:39.038 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:39.038 -07 000000501 INF: FPGA: Recv ZSGSRD 30445
17-03-17 23:10:39.048 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:39.048 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:39.048 -07 000000462 INF: FPGA: Recv ZSGSRD 30444
17-03-17 23:10:39.058 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:39.058 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:39.058 -07 000000382 INF: FPGA: Recv ZSGSRD 30432
17-03-17 23:10:39.068 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:39.068 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:39.068 -07 000000541 INF: FPGA: Recv ZSGSRD 30437
17-03-17 23:10:39.078 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:39.078 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:39.078 -07 000000478 INF: FPGA: Recv ZSGSRD 30435
17-03-17 23:10:39.088 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:39.088 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:39.088 -07 000000618 INF: FPGA: Recv ZSGSRD 30447
17-03-17 23:10:39.098 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:39.098 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:10:39.098 -07 000000593 INF: FPGA: Recv ZPIEZORD 26374
17-03-17 23:10:39.108 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:39.108 -07 000000576 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.3 V, since DAC is at 4.529 V. Piezo Error = -9.0 V.
17-03-17 23:10:39.108 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.9 um, Read 10 ADC samples: Avg = 30441 (-135.1 uncal um), Error = 0.8 uncal um, Median = 30443 (-135.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30432 (-135.0 uncal um), Max = 30447 (-135.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 23:10:39.108 -07 000000576 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30441, posNoise = 6, negNoise = 9
17-03-17 23:10:39.108 -07 000000576 INF: Z Motor: After move to -0.135880, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:10:39.108 -07 000000576 INF: Z Motor: Settle wait time = 1437 ms, measure time = 110 ms (allowed 150 ms), total time = 1547 ms
17-03-17 23:10:39.108 -07 000000576 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 23:10:39.148 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-17 23:10:39.148 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:10:39.148 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:10:39.148 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:10:39.148 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:10:39.148 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:10:39.148 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:10:39.148 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:10:39.148 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:10:39.148 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:10:39.158 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:10:39.158 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:10:39.158 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 23:10:39.158 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 23:10:39.168 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:10:39.208 -07 000000551 INF: FPGA: Recv @CAMSNAP turning led on 42
17-03-17 23:10:39.408 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 242
17-03-17 23:10:39.408 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 242
17-03-17 23:10:39.418 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:10:39.418 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-17 23:10:39.448 -07 000000561 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:10:39.448 -07 000000478 INF: FPGA: Recv CAMSNAP
17-03-17 23:10:39.448 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 23:10:39.528 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 23:10:39.528 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:10:39.528 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:10:39.528 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 23:10:39.548 -07 000000627 INF: Autofocus start
17-03-17 23:10:39.548 -07 000000627 INF: MeasureProfile start
17-03-17 23:10:39.548 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:10:39.548 -07 000000409 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:10:39.558 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 3 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:10:39.558 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:10:39.568 -07 000000627 INF: MeasureProfile done
17-03-17 23:10:39.568 -07 000000627 INF: X=16  Z correction [um]=0.0530179
17-03-17 23:10:39.568 -07 000000627 INF: Autofocus finished
17-03-17 23:10:39.758 -07 000000551 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:10:39.758 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:10:39.758 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68798828125, Z-position -0.13588279381848. ----------
17-03-17 23:10:39.758 -07 000000610 INF: Cycle	72	Tile	14	Exposure Settings		A	468	G	225	T	225	C	468
17-03-17 23:10:39.768 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28207, sync = True, waitForSettling = True)
17-03-17 23:10:39.768 -07 000000610 INF: Z Motor: Moving to -0.129123 mm, started at -0.135883 mm, distance = 6.76 um
17-03-17 23:10:39.768 -07 000000610 INF: FPGA: Xmit ZDACW 28207\n [Z Motor]
17-03-17 23:10:39.768 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 23:10:39.778 -07 000000610 INF: FPGA: 'ZDACW 28207' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:10:39.778 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:10:39.778 -07 000000561 INF: FPGA: Recv ZDACR 28207
17-03-17 23:10:39.788 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:39.788 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:10:39.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:39.938 -07 000000501 INF: FPGA: Recv ZSGSRD 29395
17-03-17 23:10:39.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:10:39.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:39.948 -07 000000478 INF: FPGA: Recv ZSGSRD 29392
17-03-17 23:10:39.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:39.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:39.958 -07 000000501 INF: FPGA: Recv ZSGSRD 29389
17-03-17 23:10:39.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:39.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:39.968 -07 000000561 INF: FPGA: Recv ZSGSRD 29393
17-03-17 23:10:39.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:39.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:39.978 -07 000000486 INF: FPGA: Recv ZSGSRD 29389
17-03-17 23:10:39.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:39.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:39.988 -07 000000551 INF: FPGA: Recv ZSGSRD 29391
17-03-17 23:10:39.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:39.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:39.998 -07 000000502 INF: FPGA: Recv ZSGSRD 29388
17-03-17 23:10:40.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:40.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:40.008 -07 000000429 INF: FPGA: Recv ZSGSRD 29388
17-03-17 23:10:40.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:40.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:40.018 -07 000000448 INF: FPGA: Recv ZSGSRD 29399
17-03-17 23:10:40.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:40.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:40.028 -07 000000618 INF: FPGA: Recv ZSGSRD 29387
17-03-17 23:10:40.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:40.038 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:10:40.038 -07 000000623 INF: FPGA: Recv ZPIEZORD 24976
17-03-17 23:10:40.048 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:40.048 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.304 V. Piezo Error = -9.7 V.
17-03-17 23:10:40.048 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.1 um, Read 10 ADC samples: Avg = 29391 (-128.4 uncal um), Error = 0.8 uncal um, Median = 29390 (-128.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29387 (-128.3 uncal um), Max = 29399 (-128.4 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:10:40.048 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29391, posNoise = 8, negNoise = 4
17-03-17 23:10:40.048 -07 000000610 INF: Z Motor: After move to -0.129123, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:10:40.048 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 23:10:40.048 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:10:40.048 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:10:40.048 -07 000000409 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:10:40.048 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:10:40.048 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:10:40.048 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:10:40.048 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:10:40.048 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:10:40.048 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 23:10:40.048 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:10:40.048 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 23:10:40.048 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:10:40.058 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:10:40.058 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:10:40.058 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:10:40.058 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:10:40.068 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 23:10:40.068 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 23:10:40.068 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 23:10:40.068 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 23:10:40.068 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 468 468 225 225 28384 150\n [Camera]
17-03-17 23:10:40.268 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:10:40.738 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 660
17-03-17 23:10:40.738 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 660
17-03-17 23:10:40.738 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:10:40.738 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 660
17-03-17 23:10:40.738 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 660
17-03-17 23:10:40.738 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:10:40.748 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:10:40.748 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 23:10:40.748 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:10:40.748 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-17 23:10:40.928 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28384 853
17-03-17 23:10:41.078 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1005
17-03-17 23:10:41.138 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 23:10:41.138 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 23:10:41.138 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:10:41.138 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 23:10:41.138 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 23:10:41.138 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:10:41.138 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:10:41.138 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:10:41.138 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 23:10:41.148 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 23:10:41.298 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1228
17-03-17 23:10:41.298 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1228
17-03-17 23:10:41.308 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:10:41.418 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1228
17-03-17 23:10:41.418 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1228
17-03-17 23:10:41.418 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:10:41.418 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:10:41.418 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 23:10:41.418 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:10:41.418 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-17 23:10:41.438 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 72, FrontChillerTemperature: 4.018051,
17-03-17 23:10:41.498 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1421
17-03-17 23:10:41.498 -07 000000486 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:10:41.498 -07 000000610 INF: FPGA: 'CAMDBLSNAP 468 468 225 225 28384 150' command took 2 ms to send, 1421 ms to get response, and 1428 ms overall
17-03-17 23:10:41.498 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:10:41.498 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68798828125, Z-Position -0.129137371069631. ------
17-03-17 23:10:41.498 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:10:41.498 -07 000000482 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13586 mm
17-03-17 23:10:41.498 -07 000000482 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:10:41.498 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 23:10:41.498 -07 000000561 INF: Y Motor: Moving to 71.5326 mm, started at 70.6880 mm, delta = 0.8446 mm
17-03-17 23:10:41.498 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:10:41.498 -07 000000547 INF: Z Motor: Entering MoveAbsStepped (DAC = 29678, sync = True, waitForSettling = False)
17-03-17 23:10:41.498 -07 000000547 INF: Z Motor: Moving to -0.135857 mm, started at -0.129137 mm, distance = -6.72 um
17-03-17 23:10:41.508 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:10:41.508 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:10:41.508 -07 000000478 INF: FPGA: Recv YRDPOS 144769
17-03-17 23:10:41.518 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 23:10:41.518 -07 000000547 INF: FPGA: Xmit ZDACW 29678\n [Z Motor]
17-03-17 23:10:41.518 -07 000000561 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:10:41.518 -07 000000561 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:10:41.518 -07 000000561 INF: Y Motor: Moving 1351 steps-30
17-03-17 23:10:41.518 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 23:10:41.528 -07 000000593 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:10:41.528 -07 000000547 INF: FPGA: 'ZDACW 29678' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 23:10:41.538 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:10:41.548 -07 000000547 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:10:41.548 -07 000000478 INF: FPGA: Recv ZDACR 29678
17-03-17 23:10:41.558 -07 000000547 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:10:41.558 -07 000000547 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-17 23:10:41.728 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:10:41.728 -07 000000593 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 23:10:41.818 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 23:10:41.818 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 23:10:41.818 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:10:41.818 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 23:10:41.818 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 23:10:41.818 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:10:41.818 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:10:41.828 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:10:41.828 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 520 ms.
17-03-17 23:10:41.828 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 23:10:41.908 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 23:10:41.908 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 23:10:41.948 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:10:41.958 -07 000000462 INF: FPGA: Recv YRDPOS 146470
17-03-17 23:10:41.958 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 23:10:41.958 -07 000000561 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:10:41.958 -07 000000561 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 23:10:41.958 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.128 mm/sec
17-03-17 23:10:42.038 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:10:42.038 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 71. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1150, R2=1196, Total=2346. Warn if over 250 bubbles per interval.
17-03-17 23:10:42.908 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:10:42.908 -07 000000501 INF: FPGA: Recv YRDPOS 146470
17-03-17 23:10:42.918 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:10:42.918 -07 000000561 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:10:42.938 -07 000000561 INF: Y Motor: After move to 71.532608, error = -0.014053, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:10:42.938 -07 000000561 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:10:42.938 -07 000000561 INF: Y Motor: Moved to 71.5186 after 1437 ms (table move)
17-03-17 23:10:42.948 -07 000000482 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135857 mm (DAC = 29678)
17-03-17 23:10:42.948 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:42.948 -07 000000475 INF: FPGA: Recv ZSGSRD 30438
17-03-17 23:10:42.958 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:42.958 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:42.958 -07 000000382 INF: FPGA: Recv ZSGSRD 30434
17-03-17 23:10:42.968 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:42.968 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:42.968 -07 000000593 INF: FPGA: Recv ZSGSRD 30437
17-03-17 23:10:42.978 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:42.978 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:42.978 -07 000000541 INF: FPGA: Recv ZSGSRD 30435
17-03-17 23:10:42.988 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:42.988 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:42.988 -07 000000448 INF: FPGA: Recv ZSGSRD 30443
17-03-17 23:10:42.998 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:42.998 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:42.998 -07 000000462 INF: FPGA: Recv ZSGSRD 30441
17-03-17 23:10:43.008 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:43.008 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:43.008 -07 000000409 INF: FPGA: Recv ZSGSRD 30443
17-03-17 23:10:43.018 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:43.018 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:43.018 -07 000000561 INF: FPGA: Recv ZSGSRD 30437
17-03-17 23:10:43.028 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:43.028 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:43.028 -07 000000576 INF: FPGA: Recv ZSGSRD 30433
17-03-17 23:10:43.038 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:43.038 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:43.038 -07 000000547 INF: FPGA: Recv ZSGSRD 30439
17-03-17 23:10:43.048 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:43.048 -07 000000482 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:10:43.048 -07 000000618 INF: FPGA: Recv ZPIEZORD 26339
17-03-17 23:10:43.058 -07 000000482 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:43.058 -07 000000482 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.3 V, since DAC is at 4.529 V. Piezo Error = -9.0 V.
17-03-17 23:10:43.058 -07 000000482 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.9 um, Read 10 ADC samples: Avg = 30438 (-135.1 uncal um), Error = 0.8 uncal um, Median = 30438 (-135.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30433 (-135.0 uncal um), Max = 30443 (-135.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:10:43.058 -07 000000482 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30438, posNoise = 5, negNoise = 5
17-03-17 23:10:43.058 -07 000000482 INF: Z Motor: After move to -0.135857, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:10:43.058 -07 000000482 INF: Z Motor: Settle wait time = 1440 ms, measure time = 110 ms (allowed 150 ms), total time = 1550 ms
17-03-17 23:10:43.058 -07 000000482 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 23:10:43.098 -07 000000482 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1593 ms
17-03-17 23:10:43.098 -07 000000482 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:10:43.098 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:10:43.098 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:10:43.098 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:10:43.098 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:10:43.098 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:10:43.098 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:10:43.098 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:10:43.098 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:10:43.108 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 23:10:43.108 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:10:43.118 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 23:10:43.118 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 23:10:43.118 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:10:43.168 -07 000000551 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:10:43.368 -07 000000623 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:10:43.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:10:43.368 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:10:43.368 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) start.
17-03-17 23:10:43.408 -07 000000593 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:10:43.408 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-17 23:10:43.408 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 23:10:43.488 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 23:10:43.488 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:10:43.488 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:10:43.488 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 23:10:43.508 -07 000000501 INF: Autofocus start
17-03-17 23:10:43.508 -07 000000501 INF: MeasureProfile start
17-03-17 23:10:43.508 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:10:43.508 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:10:43.518 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:10:43.518 -07 000000623 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:10:43.518 -07 000000501 INF: MeasureProfile done
17-03-17 23:10:43.518 -07 000000501 INF: X=-32  Z correction [um]=-0.1591732
17-03-17 23:10:43.518 -07 000000501 INF: Autofocus finished
17-03-17 23:10:43.718 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:10:43.718 -07 000000623 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:10:43.718 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.5185546875, Z-position -0.135863521182055. ----------
17-03-17 23:10:43.718 -07 000000610 INF: Cycle	72	Tile	15	Exposure Settings		A	468	G	225	T	225	C	468
17-03-17 23:10:43.728 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28156, sync = True, waitForSettling = True)
17-03-17 23:10:43.728 -07 000000610 INF: Z Motor: Moving to -0.128890 mm, started at -0.135864 mm, distance = 6.97 um
17-03-17 23:10:43.728 -07 000000610 INF: FPGA: Xmit ZDACW 28156\n [Z Motor]
17-03-17 23:10:43.728 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 23:10:43.738 -07 000000610 INF: FPGA: 'ZDACW 28156' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:10:43.738 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:10:43.738 -07 000000593 INF: FPGA: Recv ZDACR 28156
17-03-17 23:10:43.748 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:43.748 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:10:43.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:43.898 -07 000000429 INF: FPGA: Recv ZSGSRD 29355
17-03-17 23:10:43.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:43.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:43.908 -07 000000478 INF: FPGA: Recv ZSGSRD 29352
17-03-17 23:10:43.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:43.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:43.918 -07 000000475 INF: FPGA: Recv ZSGSRD 29351
17-03-17 23:10:43.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:43.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:43.928 -07 000000382 INF: FPGA: Recv ZSGSRD 29353
17-03-17 23:10:43.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:43.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:43.938 -07 000000593 INF: FPGA: Recv ZSGSRD 29353
17-03-17 23:10:43.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:43.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:43.948 -07 000000618 INF: FPGA: Recv ZSGSRD 29358
17-03-17 23:10:43.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:43.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:43.958 -07 000000593 INF: FPGA: Recv ZSGSRD 29351
17-03-17 23:10:43.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:43.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:43.968 -07 000000415 INF: FPGA: Recv ZSGSRD 29358
17-03-17 23:10:43.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:43.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:43.978 -07 000000482 INF: FPGA: Recv ZSGSRD 29344
17-03-17 23:10:43.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:43.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:43.988 -07 000000429 INF: FPGA: Recv ZSGSRD 29352
17-03-17 23:10:43.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:43.998 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:10:43.998 -07 000000623 INF: FPGA: Recv ZPIEZORD 24945
17-03-17 23:10:44.008 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:44.008 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.296 V. Piezo Error = -9.7 V.
17-03-17 23:10:44.008 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.9 um, Read 10 ADC samples: Avg = 29353 (-128.1 uncal um), Error = 0.8 uncal um, Median = 29352 (-128.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29344 (-128.1 uncal um), Max = 29358 (-128.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 23:10:44.008 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29353, posNoise = 5, negNoise = 9
17-03-17 23:10:44.008 -07 000000610 INF: Z Motor: After move to -0.128890, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:10:44.008 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 23:10:44.008 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:10:44.008 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:10:44.008 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:10:44.008 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:10:44.008 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:10:44.008 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:10:44.008 -07 000000409 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:10:44.008 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:10:44.008 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:10:44.008 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:10:44.008 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:10:44.008 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:10:44.018 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:10:44.018 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:10:44.018 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:10:44.018 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:10:44.028 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 23:10:44.028 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 23:10:44.028 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 23:10:44.028 -07 000000409 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:10:44.028 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 468 468 225 225 28333 150\n [Camera]
17-03-17 23:10:44.228 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:10:44.698 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 660
17-03-17 23:10:44.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 660
17-03-17 23:10:44.698 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:10:44.698 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:10:44.698 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-17 23:10:44.698 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 660
17-03-17 23:10:44.698 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 660
17-03-17 23:10:44.698 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:10:44.698 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:10:44.698 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 23:10:44.888 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28333 853
17-03-17 23:10:45.038 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1003
17-03-17 23:10:45.068 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 23:10:45.068 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 23:10:45.068 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:10:45.078 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 23:10:45.078 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 23:10:45.078 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:10:45.078 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 23:10:45.078 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 23:10:45.078 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:10:45.088 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 23:10:45.258 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1228
17-03-17 23:10:45.258 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1228
17-03-17 23:10:45.268 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:10:45.268 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:10:45.268 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 23:10:45.268 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1228
17-03-17 23:10:45.268 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1228
17-03-17 23:10:45.268 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:10:45.268 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:10:45.268 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 23:10:45.458 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP 1421
17-03-17 23:10:45.458 -07 000000486 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:10:45.458 -07 000000610 INF: FPGA: 'CAMDBLSNAP 468 468 225 225 28333 150' command took 2 ms to send, 1421 ms to get response, and 1428 ms overall
17-03-17 23:10:45.458 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:10:45.458 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.5185546875, Z-Position -0.128893251008244. ------
17-03-17 23:10:45.458 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13525 mm
17-03-17 23:10:45.458 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:10:45.458 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:10:45.458 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 23:10:45.458 -07 000000623 INF: Y Motor: Moving to 72.3626 mm, started at 71.5186 mm, delta = 0.8441 mm
17-03-17 23:10:45.458 -07 000000547 INF: Z Motor: Entering MoveAbsStepped (DAC = 29545, sync = True, waitForSettling = False)
17-03-17 23:10:45.458 -07 000000547 INF: Z Motor: Moving to -0.135248 mm, started at -0.128893 mm, distance = -6.36 um
17-03-17 23:10:45.458 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:10:45.468 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:10:45.468 -07 000000547 INF: FPGA: Xmit ZDACW 29545\n [Z Motor]
17-03-17 23:10:45.468 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 23:10:45.478 -07 000000547 INF: FPGA: 'ZDACW 29545' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 23:10:45.478 -07 000000547 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:10:45.478 -07 000000551 INF: FPGA: Recv ZDACR 29545
17-03-17 23:10:45.488 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:10:45.488 -07 000000547 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:45.488 -07 000000547 INF: Z Motor: MoveAbsStepped took 21 ms (did NOT wait for settling yet))
17-03-17 23:10:45.488 -07 000000627 INF: FPGA: Recv YRDPOS 146470
17-03-17 23:10:45.498 -07 000000541 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:10:45.498 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-17 23:10:45.498 -07 000000623 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:10:45.498 -07 000000623 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:10:45.498 -07 000000623 INF: Y Motor: Moving 1350 steps-29
17-03-17 23:10:45.508 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:10:45.668 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 23:10:45.668 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 23:10:45.668 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:10:45.668 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 23:10:45.668 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 23:10:45.668 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:10:45.668 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:10:45.668 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 23:10:45.668 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 23:10:45.678 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 23:10:45.698 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:10:45.698 -07 000000541 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 230 ms overall
17-03-17 23:10:45.878 -07 000000409 INF: FPGA: Recv YMVTILE
17-03-17 23:10:45.878 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 23:10:45.918 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:10:45.928 -07 000000547 INF: FPGA: Recv YRDPOS 148171
17-03-17 23:10:45.928 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 23:10:45.928 -07 000000623 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:10:45.928 -07 000000623 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 23:10:45.928 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.844 mm, average velocity = 2.181 mm/sec
17-03-17 23:10:46.798 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 72, FrontChillerTemperature: 4.026244,
17-03-17 23:10:46.878 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:10:46.878 -07 000000547 INF: FPGA: Recv YRDPOS 148171
17-03-17 23:10:46.888 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:10:46.888 -07 000000623 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:10:46.908 -07 000000623 INF: Y Motor: After move to 72.362610, error = -0.013489, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:10:46.908 -07 000000623 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:10:46.908 -07 000000623 INF: Y Motor: Moved to 72.3491 after 1447 ms (table move)
17-03-17 23:10:46.918 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135248 mm (DAC = 29545)
17-03-17 23:10:46.918 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:46.918 -07 000000409 INF: FPGA: Recv ZSGSRD 30348
17-03-17 23:10:46.928 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:46.928 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:46.928 -07 000000501 INF: FPGA: Recv ZSGSRD 30344
17-03-17 23:10:46.938 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:46.938 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:46.938 -07 000000478 INF: FPGA: Recv ZSGSRD 30342
17-03-17 23:10:46.948 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:46.948 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:46.948 -07 000000486 INF: FPGA: Recv ZSGSRD 30344
17-03-17 23:10:46.958 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:46.958 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:46.958 -07 000000627 INF: FPGA: Recv ZSGSRD 30343
17-03-17 23:10:46.968 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:46.968 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:46.968 -07 000000561 INF: FPGA: Recv ZSGSRD 30352
17-03-17 23:10:46.978 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:46.978 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:46.978 -07 000000462 INF: FPGA: Recv ZSGSRD 30342
17-03-17 23:10:46.988 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:46.988 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:46.988 -07 000000502 INF: FPGA: Recv ZSGSRD 30340
17-03-17 23:10:46.998 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:46.998 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:46.998 -07 000000482 INF: FPGA: Recv ZSGSRD 30343
17-03-17 23:10:47.008 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:47.008 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:47.008 -07 000000429 INF: FPGA: Recv ZSGSRD 30345
17-03-17 23:10:47.018 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:47.018 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:10:47.018 -07 000000409 INF: FPGA: Recv ZPIEZORD 26274
17-03-17 23:10:47.028 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:47.028 -07 000000382 INF: Z Motor: Piezo is near 36.1 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.508 V. Piezo Error = -9.0 V.
17-03-17 23:10:47.028 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.2 um, Read 10 ADC samples: Avg = 30344 (-134.5 uncal um), Error = 0.8 uncal um, Median = 30344 (-134.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30340 (-134.4 uncal um), Max = 30352 (-134.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:10:47.028 -07 000000382 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30344, posNoise = 8, negNoise = 4
17-03-17 23:10:47.028 -07 000000382 INF: Z Motor: After move to -0.135248, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:10:47.028 -07 000000382 INF: Z Motor: Settle wait time = 1451 ms, measure time = 111 ms (allowed 150 ms), total time = 1562 ms
17-03-17 23:10:47.028 -07 000000382 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 23:10:47.038 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:10:47.038 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 71. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1150, R2=1196, Total=2346. Warn if over 250 bubbles per interval.
17-03-17 23:10:47.068 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-17 23:10:47.068 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:10:47.068 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:10:47.068 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:10:47.068 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:10:47.068 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:10:47.068 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:10:47.068 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:10:47.068 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:10:47.068 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:10:47.078 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:10:47.078 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:10:47.078 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 23:10:47.078 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 23:10:47.088 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:10:47.128 -07 000000623 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:10:47.328 -07 000000551 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:10:47.328 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:10:47.328 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:10:47.438 -07 000000429 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:10:47.438 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 23:10:47.438 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) start.
17-03-17 23:10:47.438 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 349 ms to get response, and 357 ms overall
17-03-17 23:10:47.558 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 23:10:47.558 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:10:47.558 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:10:47.558 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 229 ms.
17-03-17 23:10:47.638 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:10:47.638 -07 000000478 INF: Autofocus start
17-03-17 23:10:47.638 -07 000000478 INF: MeasureProfile start
17-03-17 23:10:47.638 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:10:47.648 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:10:47.648 -07 000000547 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:10:47.648 -07 000000478 INF: MeasureProfile done
17-03-17 23:10:47.648 -07 000000478 INF: X=-32  Z correction [um]=-0.1591732
17-03-17 23:10:47.648 -07 000000478 INF: Autofocus finished
17-03-17 23:10:47.848 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:10:47.848 -07 000000547 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:10:47.848 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34912109375, Z-position -0.13525964524073. ----------
17-03-17 23:10:47.858 -07 000000610 INF: Cycle	72	Tile	16	Exposure Settings		A	468	G	225	T	225	C	468
17-03-17 23:10:47.858 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28023, sync = True, waitForSettling = True)
17-03-17 23:10:47.858 -07 000000610 INF: Z Motor: Moving to -0.128281 mm, started at -0.135260 mm, distance = 6.98 um
17-03-17 23:10:47.858 -07 000000610 INF: FPGA: Xmit ZDACW 28023\n [Z Motor]
17-03-17 23:10:47.858 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 23:10:47.868 -07 000000610 INF: FPGA: 'ZDACW 28023' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:10:47.868 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:10:47.868 -07 000000415 INF: FPGA: Recv ZDACR 28023
17-03-17 23:10:47.878 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:47.878 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:10:48.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:48.028 -07 000000478 INF: FPGA: Recv ZSGSRD 29264
17-03-17 23:10:48.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:10:48.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:48.038 -07 000000502 INF: FPGA: Recv ZSGSRD 29261
17-03-17 23:10:48.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:48.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:48.048 -07 000000576 INF: FPGA: Recv ZSGSRD 29260
17-03-17 23:10:48.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:48.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:48.058 -07 000000623 INF: FPGA: Recv ZSGSRD 29259
17-03-17 23:10:48.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:48.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:48.068 -07 000000593 INF: FPGA: Recv ZSGSRD 29259
17-03-17 23:10:48.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:48.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:48.078 -07 000000478 INF: FPGA: Recv ZSGSRD 29255
17-03-17 23:10:48.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:48.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:48.088 -07 000000502 INF: FPGA: Recv ZSGSRD 29256
17-03-17 23:10:48.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:48.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:48.098 -07 000000576 INF: FPGA: Recv ZSGSRD 29258
17-03-17 23:10:48.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:48.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:48.108 -07 000000482 INF: FPGA: Recv ZSGSRD 29261
17-03-17 23:10:48.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:48.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:48.118 -07 000000475 INF: FPGA: Recv ZSGSRD 29260
17-03-17 23:10:48.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:48.128 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:10:48.128 -07 000000429 INF: FPGA: Recv ZPIEZORD 24861
17-03-17 23:10:48.138 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 2 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:48.138 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.276 V. Piezo Error = -9.7 V.
17-03-17 23:10:48.138 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.3 um, Read 10 ADC samples: Avg = 29259 (-127.5 uncal um), Error = 0.8 uncal um, Median = 29260 (-127.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29255 (-127.5 uncal um), Max = 29264 (-127.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:10:48.138 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29259, posNoise = 5, negNoise = 4
17-03-17 23:10:48.138 -07 000000610 INF: Z Motor: After move to -0.128281, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:10:48.138 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 23:10:48.138 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:10:48.138 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:10:48.138 -07 000000409 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:10:48.138 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:10:48.138 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:10:48.138 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:10:48.138 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:10:48.138 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:10:48.138 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:10:48.138 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:10:48.138 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:10:48.138 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:10:48.148 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:10:48.148 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:10:48.148 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:10:48.148 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:10:48.158 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 23:10:48.158 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:10:48.158 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 23:10:48.158 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:10:48.158 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 468 468 225 225 28200 150\n [Camera]
17-03-17 23:10:48.358 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:10:48.828 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 660
17-03-17 23:10:48.828 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 660
17-03-17 23:10:48.828 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:10:48.838 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 660
17-03-17 23:10:48.838 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 660
17-03-17 23:10:48.838 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:10:48.838 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:10:48.838 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 23:10:48.838 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:10:48.838 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 23:10:49.028 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28200 853
17-03-17 23:10:49.168 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1003
17-03-17 23:10:49.228 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 23:10:49.228 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 23:10:49.228 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:10:49.238 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:10:49.238 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 23:10:49.238 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 23:10:49.238 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 23:10:49.238 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:10:49.238 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:10:49.248 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 23:10:49.398 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1228
17-03-17 23:10:49.398 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1228
17-03-17 23:10:49.398 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:10:49.398 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1228
17-03-17 23:10:49.398 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1228
17-03-17 23:10:49.398 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:10:49.518 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:10:49.518 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-17 23:10:49.518 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:10:49.518 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-17 23:10:49.588 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1421
17-03-17 23:10:49.588 -07 000000623 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:10:49.588 -07 000000610 INF: FPGA: 'CAMDBLSNAP 468 468 225 225 28200 150' command took 2 ms to send, 1417 ms to get response, and 1428 ms overall
17-03-17 23:10:49.588 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:10:49.588 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.34912109375, Z-Position -0.128289375066919. ------
17-03-17 23:10:49.598 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:10:49.598 -07 000000547 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13485 mm
17-03-17 23:10:49.598 -07 000000547 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:10:49.598 -07 000000627 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 23:10:49.598 -07 000000627 INF: Y Motor: Moving to 73.1926 mm, started at 72.3491 mm, delta = 0.8435 mm
17-03-17 23:10:49.598 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 29459, sync = True, waitForSettling = False)
17-03-17 23:10:49.598 -07 000000551 INF: Z Motor: Moving to -0.134855 mm, started at -0.128289 mm, distance = -6.57 um
17-03-17 23:10:49.598 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:10:49.608 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:10:49.608 -07 000000551 INF: FPGA: Xmit ZDACW 29459\n [Z Motor]
17-03-17 23:10:49.608 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 23:10:49.618 -07 000000551 INF: FPGA: 'ZDACW 29459' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 23:10:49.618 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:10:49.628 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:10:49.628 -07 000000448 INF: FPGA: Recv YRDPOS 148171
17-03-17 23:10:49.638 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:10:49.638 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 33 ms overall
17-03-17 23:10:49.638 -07 000000627 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:10:49.638 -07 000000627 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:10:49.638 -07 000000627 INF: Y Motor: Moving 1350 steps-28
17-03-17 23:10:49.638 -07 000000618 INF: FPGA: Recv ZDACR 29459
17-03-17 23:10:49.648 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:10:49.648 -07 000000551 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-17 23:10:49.648 -07 000000627 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:10:49.818 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:10:49.818 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 23:10:49.918 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 23:10:49.918 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 23:10:49.918 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:10:49.918 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 23:10:49.918 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 23:10:49.918 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:10:49.918 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:10:49.928 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:10:49.928 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 524 ms.
17-03-17 23:10:49.928 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 527 ms.
17-03-17 23:10:50.018 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-17 23:10:50.018 -07 000000627 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-17 23:10:50.058 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:10:50.068 -07 000000561 INF: FPGA: Recv YRDPOS 149863
17-03-17 23:10:50.068 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 23:10:50.068 -07 000000627 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:10:50.068 -07 000000627 INF: Y Motor: Position error before settling (table move) = -35 encoder counts (-0.017 mm)
17-03-17 23:10:50.068 -07 000000627 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.843 mm, average velocity = 2.191 mm/sec
17-03-17 23:10:51.018 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:10:51.018 -07 000000448 INF: FPGA: Recv YRDPOS 149864
17-03-17 23:10:51.028 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:51.028 -07 000000627 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:10:51.048 -07 000000627 INF: Y Motor: After move to 73.192604, error = -0.016823, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:10:51.048 -07 000000627 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 23:10:51.048 -07 000000627 INF: Y Motor: Moved to 73.1758 after 1449 ms (table move)
17-03-17 23:10:51.048 -07 000000547 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134855 mm (DAC = 29459)
17-03-17 23:10:51.048 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:51.058 -07 000000478 INF: FPGA: Recv ZSGSRD 30284
17-03-17 23:10:51.058 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 23:10:51.058 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:51.058 -07 000000576 INF: FPGA: Recv ZSGSRD 30283
17-03-17 23:10:51.068 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:10:51.068 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:51.068 -07 000000429 INF: FPGA: Recv ZSGSRD 30273
17-03-17 23:10:51.078 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:10:51.078 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:51.078 -07 000000623 INF: FPGA: Recv ZSGSRD 30284
17-03-17 23:10:51.088 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:51.088 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:51.088 -07 000000501 INF: FPGA: Recv ZSGSRD 30282
17-03-17 23:10:51.098 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:51.098 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:51.098 -07 000000462 INF: FPGA: Recv ZSGSRD 30286
17-03-17 23:10:51.108 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:51.108 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:51.108 -07 000000541 INF: FPGA: Recv ZSGSRD 30285
17-03-17 23:10:51.118 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:51.118 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:51.118 -07 000000593 INF: FPGA: Recv ZSGSRD 30282
17-03-17 23:10:51.128 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:51.128 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:51.128 -07 000000623 INF: FPGA: Recv ZSGSRD 30279
17-03-17 23:10:51.138 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:51.138 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:51.138 -07 000000448 INF: FPGA: Recv ZSGSRD 30274
17-03-17 23:10:51.148 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:51.148 -07 000000547 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:10:51.148 -07 000000382 INF: FPGA: Recv ZPIEZORD 26194
17-03-17 23:10:51.158 -07 000000547 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:51.158 -07 000000547 INF: Z Motor: Piezo is near 36.0 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.495 V. Piezo Error = -9.0 V.
17-03-17 23:10:51.158 -07 000000547 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.9 um, Read 10 ADC samples: Avg = 30281 (-134.1 uncal um), Error = 0.8 uncal um, Median = 30282 (-134.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30273 (-134.0 uncal um), Max = 30286 (-134.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 23:10:51.158 -07 000000547 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30281, posNoise = 5, negNoise = 8
17-03-17 23:10:51.158 -07 000000547 INF: Z Motor: After move to -0.134855, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:10:51.158 -07 000000547 INF: Z Motor: Settle wait time = 1451 ms, measure time = 102 ms (allowed 150 ms), total time = 1553 ms
17-03-17 23:10:51.158 -07 000000547 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 23:10:51.208 -07 000000547 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1606 ms
17-03-17 23:10:51.208 -07 000000547 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:10:51.208 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:10:51.208 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:10:51.208 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:10:51.208 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:10:51.208 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:10:51.208 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:10:51.208 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:10:51.208 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:10:51.218 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:10:51.218 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:10:51.228 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 23:10:51.228 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 23:10:51.228 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:10:51.268 -07 000000593 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:10:51.468 -07 000000547 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:10:51.468 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:10:51.468 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:10:51.478 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-17 23:10:51.518 -07 000000541 INF: FPGA: Recv @CAMSNAP 284
17-03-17 23:10:51.518 -07 000000478 INF: FPGA: Recv CAMSNAP
17-03-17 23:10:51.518 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 288 ms overall
17-03-17 23:10:51.588 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 23:10:51.588 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:10:51.588 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:10:51.588 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 23:10:51.618 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:10:51.618 -07 000000475 INF: Autofocus start
17-03-17 23:10:51.618 -07 000000475 INF: MeasureProfile start
17-03-17 23:10:51.618 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:10:51.628 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:10:51.628 -07 000000551 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:10:51.628 -07 000000475 INF: MeasureProfile done
17-03-17 23:10:51.628 -07 000000475 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 23:10:51.628 -07 000000475 INF: Autofocus finished
17-03-17 23:10:51.828 -07 000000448 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:10:51.828 -07 000000551 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:10:51.828 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17578125, Z-position -0.134854919875799. ----------
17-03-17 23:10:51.838 -07 000000610 INF: Cycle	72	Tile	17	Exposure Settings		A	468	G	225	T	225	C	468
17-03-17 23:10:51.838 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27954, sync = True, waitForSettling = True)
17-03-17 23:10:51.838 -07 000000610 INF: Z Motor: Moving to -0.127965 mm, started at -0.134855 mm, distance = 6.89 um
17-03-17 23:10:51.838 -07 000000610 INF: FPGA: Xmit ZDACW 27954\n [Z Motor]
17-03-17 23:10:51.838 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 23:10:51.848 -07 000000610 INF: FPGA: 'ZDACW 27954' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:10:51.858 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:10:51.858 -07 000000486 INF: FPGA: Recv ZDACR 27954
17-03-17 23:10:51.868 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:10:51.868 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:10:52.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:52.018 -07 000000482 INF: FPGA: Recv ZSGSRD 29211
17-03-17 23:10:52.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:10:52.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:52.028 -07 000000462 INF: FPGA: Recv ZSGSRD 29213
17-03-17 23:10:52.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:52.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:52.038 -07 000000551 INF: FPGA: Recv ZSGSRD 29203
17-03-17 23:10:52.038 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:10:52.038 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 71. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1150, R2=1196, Total=2346. Warn if over 250 bubbles per interval.
17-03-17 23:10:52.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:52.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:52.048 -07 000000627 INF: FPGA: Recv ZSGSRD 29208
17-03-17 23:10:52.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:52.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:52.058 -07 000000576 INF: FPGA: Recv ZSGSRD 29218
17-03-17 23:10:52.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:52.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:52.068 -07 000000382 INF: FPGA: Recv ZSGSRD 29208
17-03-17 23:10:52.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:52.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:52.078 -07 000000541 INF: FPGA: Recv ZSGSRD 29211
17-03-17 23:10:52.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:52.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:52.088 -07 000000409 INF: FPGA: Recv ZSGSRD 29209
17-03-17 23:10:52.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:52.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:52.098 -07 000000547 INF: FPGA: Recv ZSGSRD 29210
17-03-17 23:10:52.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:52.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:52.108 -07 000000576 INF: FPGA: Recv ZSGSRD 29214
17-03-17 23:10:52.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:52.118 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:10:52.118 -07 000000486 INF: FPGA: Recv ZPIEZORD 24784
17-03-17 23:10:52.128 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:52.128 -07 000000610 INF: Z Motor: Piezo is near 32.9 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.266 V. Piezo Error = -9.7 V.
17-03-17 23:10:52.128 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.0 um, Read 10 ADC samples: Avg = 29210 (-127.2 uncal um), Error = 0.8 uncal um, Median = 29210 (-127.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29203 (-127.2 uncal um), Max = 29218 (-127.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 23:10:52.128 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29210, posNoise = 8, negNoise = 7
17-03-17 23:10:52.128 -07 000000610 INF: Z Motor: After move to -0.127965, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:10:52.128 -07 000000610 INF: Z Motor: MoveAbsStepped took 291 ms)
17-03-17 23:10:52.128 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:10:52.138 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:10:52.138 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:10:52.138 -07 000000409 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:10:52.138 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:10:52.138 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:10:52.148 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:10:52.148 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:10:52.148 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:10:52.148 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:10:52.148 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:10:52.148 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:10:52.148 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 23:10:52.148 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:10:52.158 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 23:10:52.158 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:10:52.168 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 72, FrontChillerTemperature: 4.008536,
17-03-17 23:10:52.168 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 23:10:52.168 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 24 ms.
17-03-17 23:10:52.168 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 23:10:52.168 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 23:10:52.188 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 468 468 225 225 28131 150\n [Camera]
17-03-17 23:10:52.388 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-17 23:10:52.848 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 660
17-03-17 23:10:52.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 660
17-03-17 23:10:52.858 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 660
17-03-17 23:10:52.858 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 660
17-03-17 23:10:52.858 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:10:52.858 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:10:52.858 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:10:52.858 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 23:10:52.858 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:10:52.858 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 23:10:53.048 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28131 853
17-03-17 23:10:53.198 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1003
17-03-17 23:10:53.238 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 23:10:53.238 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 23:10:53.238 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:10:53.238 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 374 ms.
17-03-17 23:10:53.238 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 23:10:53.238 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:10:53.238 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 23:10:53.238 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:10:53.238 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 23:10:53.248 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 23:10:53.418 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1228
17-03-17 23:10:53.418 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1228
17-03-17 23:10:53.418 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:10:53.418 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:10:53.418 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 23:10:53.418 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1228
17-03-17 23:10:53.418 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1228
17-03-17 23:10:53.418 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:10:53.418 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:10:53.418 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 23:10:53.608 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP 1421
17-03-17 23:10:53.608 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:10:53.608 -07 000000610 INF: FPGA: 'CAMDBLSNAP 468 468 225 225 28131 150' command took 2 ms to send, 1418 ms to get response, and 1436 ms overall
17-03-17 23:10:53.618 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:10:53.618 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17578125, Z-Position -0.127974588671973. ------
17-03-17 23:10:53.618 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:10:53.618 -07 000000475 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13435 mm
17-03-17 23:10:53.618 -07 000000475 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:10:53.618 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 23:10:53.618 -07 000000541 INF: Y Motor: Moving to 74.0226 mm, started at 73.1758 mm, delta = 0.8468 mm
17-03-17 23:10:53.618 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:10:53.618 -07 000000429 INF: Z Motor: Entering MoveAbsStepped (DAC = 29350, sync = True, waitForSettling = False)
17-03-17 23:10:53.618 -07 000000429 INF: Z Motor: Moving to -0.134356 mm, started at -0.127975 mm, distance = -6.38 um
17-03-17 23:10:53.628 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:10:53.628 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:10:53.628 -07 000000547 INF: FPGA: Recv YRDPOS 149864
17-03-17 23:10:53.638 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 23:10:53.638 -07 000000541 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:10:53.638 -07 000000541 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:10:53.638 -07 000000541 INF: Y Motor: Moving 1355 steps-35
17-03-17 23:10:53.638 -07 000000429 INF: FPGA: Xmit ZDACW 29350\n [Z Motor]
17-03-17 23:10:53.638 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 23:10:53.648 -07 000000429 INF: FPGA: 'ZDACW 29350' command took 1 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 23:10:53.648 -07 000000623 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:10:53.658 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:10:53.668 -07 000000429 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:10:53.668 -07 000000462 INF: FPGA: Recv ZDACR 29350
17-03-17 23:10:53.678 -07 000000429 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:10:53.678 -07 000000429 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 23:10:53.818 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 23:10:53.818 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 23:10:53.818 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:10:53.818 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 23:10:53.818 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 23:10:53.818 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:10:53.818 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:10:53.818 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 23:10:53.818 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 23:10:53.828 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 23:10:53.848 -07 000000576 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:10:53.848 -07 000000623 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 23:10:54.028 -07 000000478 INF: FPGA: Recv YMVTILE
17-03-17 23:10:54.028 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 23:10:54.068 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:10:54.068 -07 000000551 INF: FPGA: Recv YRDPOS 151567
17-03-17 23:10:54.078 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:10:54.078 -07 000000541 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:10:54.078 -07 000000541 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 23:10:54.078 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.847 mm, average velocity = 2.133 mm/sec
17-03-17 23:10:55.028 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:10:55.028 -07 000000486 INF: FPGA: Recv YRDPOS 151568
17-03-17 23:10:55.038 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:10:55.038 -07 000000541 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:10:55.048 -07 000000541 INF: Y Motor: After move to 74.022606, error = -0.014793, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:10:55.058 -07 000000541 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 23:10:55.058 -07 000000541 INF: Y Motor: Moved to 74.0078 after 1432 ms (table move)
17-03-17 23:10:55.058 -07 000000475 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134356 mm (DAC = 29350)
17-03-17 23:10:55.058 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:55.058 -07 000000482 INF: FPGA: Recv ZSGSRD 30209
17-03-17 23:10:55.068 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:10:55.068 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:55.068 -07 000000415 INF: FPGA: Recv ZSGSRD 30205
17-03-17 23:10:55.078 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:55.078 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:55.078 -07 000000448 INF: FPGA: Recv ZSGSRD 30205
17-03-17 23:10:55.088 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:55.088 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:55.088 -07 000000561 INF: FPGA: Recv ZSGSRD 30207
17-03-17 23:10:55.098 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:55.098 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:55.098 -07 000000627 INF: FPGA: Recv ZSGSRD 30204
17-03-17 23:10:55.108 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:55.108 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:55.108 -07 000000618 INF: FPGA: Recv ZSGSRD 30204
17-03-17 23:10:55.118 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:55.118 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:55.118 -07 000000623 INF: FPGA: Recv ZSGSRD 30203
17-03-17 23:10:55.128 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:55.128 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:55.128 -07 000000618 INF: FPGA: Recv ZSGSRD 30205
17-03-17 23:10:55.138 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:55.138 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:55.138 -07 000000627 INF: FPGA: Recv ZSGSRD 30200
17-03-17 23:10:55.148 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:55.148 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:55.148 -07 000000593 INF: FPGA: Recv ZSGSRD 30205
17-03-17 23:10:55.158 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:55.158 -07 000000475 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:10:55.158 -07 000000551 INF: FPGA: Recv ZPIEZORD 26116
17-03-17 23:10:55.168 -07 000000475 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:55.168 -07 000000475 INF: Z Motor: Piezo is near 35.8 V (nominally 0 to 100 V), expect near 44.8 V, since DAC is at 4.479 V. Piezo Error = -9.0 V.
17-03-17 23:10:55.168 -07 000000475 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.4 um, Read 10 ADC samples: Avg = 30205 (-133.6 uncal um), Error = 0.8 uncal um, Median = 30205 (-133.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30200 (-133.5 uncal um), Max = 30209 (-133.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:10:55.168 -07 000000475 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30205, posNoise = 4, negNoise = 5
17-03-17 23:10:55.168 -07 000000475 INF: Z Motor: After move to -0.134356, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:10:55.168 -07 000000475 INF: Z Motor: Settle wait time = 1434 ms, measure time = 107 ms (allowed 150 ms), total time = 1541 ms
17-03-17 23:10:55.168 -07 000000475 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 23:10:55.218 -07 000000475 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1594 ms
17-03-17 23:10:55.218 -07 000000475 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:10:55.218 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:10:55.218 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:10:55.218 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:10:55.218 -07 000000409 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:10:55.218 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:10:55.218 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:10:55.228 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:10:55.228 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:10:55.228 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:10:55.228 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:10:55.238 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 23:10:55.238 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 23:10:55.238 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:10:55.288 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:10:55.488 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:10:55.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:10:55.488 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:10:55.488 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 658880552, 0x0, 559484976) start.
17-03-17 23:10:55.528 -07 000000541 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:10:55.528 -07 000000482 INF: FPGA: Recv CAMSNAP
17-03-17 23:10:55.528 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 285 ms to get response, and 287 ms overall
17-03-17 23:10:55.618 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 658880552, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 23:10:55.618 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:10:55.618 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:10:55.618 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 23:10:55.628 -07 000000475 INF: Autofocus start
17-03-17 23:10:55.628 -07 000000475 INF: MeasureProfile start
17-03-17 23:10:55.628 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:10:55.628 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:10:55.638 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:10:55.638 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:10:55.638 -07 000000475 INF: MeasureProfile done
17-03-17 23:10:55.638 -07 000000475 INF: X=0  Z correction [um]=-0.02394831
17-03-17 23:10:55.638 -07 000000475 INF: Autofocus finished
17-03-17 23:10:55.838 -07 000000409 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:10:55.838 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:10:55.838 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0078125, Z-position -0.134366679753025. ----------
17-03-17 23:10:55.838 -07 000000610 INF: Cycle	72	Tile	18	Exposure Settings		A	468	G	225	T	225	C	468
17-03-17 23:10:55.848 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27857, sync = True, waitForSettling = True)
17-03-17 23:10:55.848 -07 000000610 INF: Z Motor: Moving to -0.127521 mm, started at -0.134367 mm, distance = 6.85 um
17-03-17 23:10:55.848 -07 000000610 INF: FPGA: Xmit ZDACW 27857\n [Z Motor]
17-03-17 23:10:55.848 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 23:10:55.858 -07 000000610 INF: FPGA: 'ZDACW 27857' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:10:55.858 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:10:55.858 -07 000000623 INF: FPGA: Recv ZDACR 27857
17-03-17 23:10:55.868 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:55.868 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:10:56.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:56.018 -07 000000593 INF: FPGA: Recv ZSGSRD 29142
17-03-17 23:10:56.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:10:56.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:56.028 -07 000000576 INF: FPGA: Recv ZSGSRD 29139
17-03-17 23:10:56.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:56.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:56.038 -07 000000561 INF: FPGA: Recv ZSGSRD 29140
17-03-17 23:10:56.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:56.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:56.048 -07 000000627 INF: FPGA: Recv ZSGSRD 29133
17-03-17 23:10:56.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:56.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:56.058 -07 000000541 INF: FPGA: Recv ZSGSRD 29144
17-03-17 23:10:56.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:56.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:56.068 -07 000000551 INF: FPGA: Recv ZSGSRD 29139
17-03-17 23:10:56.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:56.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:56.078 -07 000000415 INF: FPGA: Recv ZSGSRD 29141
17-03-17 23:10:56.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:56.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:56.088 -07 000000486 INF: FPGA: Recv ZSGSRD 29142
17-03-17 23:10:56.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:56.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:56.098 -07 000000627 INF: FPGA: Recv ZSGSRD 29138
17-03-17 23:10:56.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:56.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:56.108 -07 000000541 INF: FPGA: Recv ZSGSRD 29142
17-03-17 23:10:56.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:56.118 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:10:56.118 -07 000000551 INF: FPGA: Recv ZPIEZORD 24712
17-03-17 23:10:56.128 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:56.128 -07 000000610 INF: Z Motor: Piezo is near 32.8 V (nominally 0 to 100 V), expect near 42.5 V, since DAC is at 4.251 V. Piezo Error = -9.7 V.
17-03-17 23:10:56.128 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.5 um, Read 10 ADC samples: Avg = 29140 (-126.8 uncal um), Error = 0.8 uncal um, Median = 29140 (-126.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29133 (-126.7 uncal um), Max = 29144 (-126.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 23:10:56.128 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29140, posNoise = 4, negNoise = 7
17-03-17 23:10:56.128 -07 000000610 INF: Z Motor: After move to -0.127521, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:10:56.128 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 23:10:56.128 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:10:56.128 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:10:56.128 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:10:56.128 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:10:56.128 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:10:56.128 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:10:56.128 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:10:56.128 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:10:56.128 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:10:56.128 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:10:56.128 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:10:56.128 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:10:56.138 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:10:56.138 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:10:56.138 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 23:10:56.138 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:10:56.148 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 23:10:56.148 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:10:56.148 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 23:10:56.148 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 23:10:56.148 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 468 468 225 225 28034 150\n [Camera]
17-03-17 23:10:56.348 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:10:56.818 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 662
17-03-17 23:10:56.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 662
17-03-17 23:10:56.818 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:10:56.818 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:10:56.818 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 23:10:56.818 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 662
17-03-17 23:10:56.818 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 662
17-03-17 23:10:56.818 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:10:56.818 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:10:56.818 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 23:10:57.008 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28034 853
17-03-17 23:10:57.038 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:10:57.048 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 71. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1150, R2=1196, Total=2346. Warn if over 250 bubbles per interval.
17-03-17 23:10:57.158 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1003
17-03-17 23:10:57.198 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 23:10:57.198 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 23:10:57.198 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:10:57.198 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 23:10:57.198 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 23:10:57.198 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:10:57.198 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:10:57.208 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:10:57.208 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 23:10:57.208 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 23:10:57.388 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1230
17-03-17 23:10:57.388 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1230
17-03-17 23:10:57.388 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:10:57.388 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:10:57.388 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 23:10:57.388 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1230
17-03-17 23:10:57.388 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1230
17-03-17 23:10:57.388 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:10:57.388 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:10:57.388 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 23:10:57.548 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 72, FrontChillerTemperature: 4.015368,
17-03-17 23:10:57.578 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP 1421
17-03-17 23:10:57.578 -07 000000482 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:10:57.578 -07 000000610 INF: FPGA: 'CAMDBLSNAP 468 468 225 225 28034 150' command took 5 ms to send, 1412 ms to get response, and 1427 ms overall
17-03-17 23:10:57.578 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:10:57.578 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0078125, Z-Position -0.127524893822049. ------
17-03-17 23:10:57.588 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13399 mm
17-03-17 23:10:57.588 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:10:57.588 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 23:10:57.588 -07 000000561 INF: Y Motor: Moving to 74.8526 mm, started at 74.0078 mm, delta = 0.8448 mm
17-03-17 23:10:57.588 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 29271, sync = True, waitForSettling = False)
17-03-17 23:10:57.588 -07 000000486 INF: Z Motor: Moving to -0.133994 mm, started at -0.127525 mm, distance = -6.47 um
17-03-17 23:10:57.598 -07 000000486 INF: FPGA: Xmit ZDACW 29271\n [Z Motor]
17-03-17 23:10:57.598 -07 000000409 INF: FPGA: Recv ZDACW
17-03-17 23:10:57.608 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:10:57.608 -07 000000486 INF: FPGA: 'ZDACW 29271' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 23:10:57.608 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:10:57.618 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:10:57.618 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:10:57.618 -07 000000502 INF: FPGA: Recv YRDPOS 151568
17-03-17 23:10:57.628 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:10:57.628 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 35 ms overall
17-03-17 23:10:57.628 -07 000000561 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:10:57.628 -07 000000561 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:10:57.628 -07 000000561 INF: Y Motor: Moving 1352 steps-31
17-03-17 23:10:57.628 -07 000000409 INF: FPGA: Recv ZDACR 29271
17-03-17 23:10:57.638 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:10:57.638 -07 000000486 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:10:57.638 -07 000000486 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-17 23:10:57.648 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:10:57.768 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 23:10:57.768 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 23:10:57.768 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:10:57.768 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 23:10:57.768 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 23:10:57.768 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:10:57.768 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:10:57.778 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 23:10:57.778 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 23:10:57.778 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 23:10:57.838 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:10:57.838 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-17 23:10:58.018 -07 000000551 INF: FPGA: Recv YMVTILE
17-03-17 23:10:58.018 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 2 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 23:10:58.048 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:10:58.048 -07 000000593 INF: FPGA: Recv YRDPOS 153255
17-03-17 23:10:58.058 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:10:58.058 -07 000000561 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:10:58.058 -07 000000561 INF: Y Motor: Position error before settling (table move) = -43 encoder counts (-0.021 mm)
17-03-17 23:10:58.058 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.128 mm/sec
17-03-17 23:10:59.008 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:10:59.008 -07 000000429 INF: FPGA: Recv YRDPOS 153255
17-03-17 23:10:59.018 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:10:59.018 -07 000000561 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:10:59.028 -07 000000561 INF: Y Motor: After move to 74.852608, error = -0.021065, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:10:59.028 -07 000000561 INF: Y Motor: Position error after settling (table move) = -43 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:10:59.028 -07 000000561 INF: Y Motor: Moved to 74.8315 after 1444 ms (table move)
17-03-17 23:10:59.038 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133994 mm (DAC = 29271)
17-03-17 23:10:59.038 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:59.038 -07 000000618 INF: FPGA: Recv ZSGSRD 30145
17-03-17 23:10:59.048 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:10:59.048 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:59.048 -07 000000502 INF: FPGA: Recv ZSGSRD 30144
17-03-17 23:10:59.058 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:59.058 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:59.058 -07 000000409 INF: FPGA: Recv ZSGSRD 30142
17-03-17 23:10:59.068 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:59.068 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:59.068 -07 000000462 INF: FPGA: Recv ZSGSRD 30147
17-03-17 23:10:59.078 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:59.078 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:59.078 -07 000000475 INF: FPGA: Recv ZSGSRD 30149
17-03-17 23:10:59.088 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:59.088 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:59.088 -07 000000429 INF: FPGA: Recv ZSGSRD 30150
17-03-17 23:10:59.098 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:59.098 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:59.098 -07 000000627 INF: FPGA: Recv ZSGSRD 30153
17-03-17 23:10:59.108 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:59.108 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:59.108 -07 000000561 INF: FPGA: Recv ZSGSRD 30147
17-03-17 23:10:59.118 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:59.118 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:59.118 -07 000000547 INF: FPGA: Recv ZSGSRD 30149
17-03-17 23:10:59.128 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:59.128 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:59.128 -07 000000482 INF: FPGA: Recv ZSGSRD 30151
17-03-17 23:10:59.138 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:59.138 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:10:59.138 -07 000000429 INF: FPGA: Recv ZPIEZORD 26054
17-03-17 23:10:59.148 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:59.148 -07 000000501 INF: Z Motor: Piezo is near 35.7 V (nominally 0 to 100 V), expect near 44.7 V, since DAC is at 4.466 V. Piezo Error = -9.0 V.
17-03-17 23:10:59.148 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.0 um, Read 10 ADC samples: Avg = 30148 (-133.2 uncal um), Error = 0.8 uncal um, Median = 30148 (-133.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30142 (-133.2 uncal um), Max = 30153 (-133.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:10:59.148 -07 000000501 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30148, posNoise = 5, negNoise = 6
17-03-17 23:10:59.148 -07 000000501 INF: Z Motor: After move to -0.133994, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:10:59.148 -07 000000501 INF: Z Motor: Settle wait time = 1447 ms, measure time = 109 ms (allowed 150 ms), total time = 1556 ms
17-03-17 23:10:59.148 -07 000000501 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 23:10:59.198 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1609 ms
17-03-17 23:10:59.198 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:10:59.198 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:10:59.198 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:10:59.198 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:10:59.198 -07 000000409 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:10:59.198 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:10:59.198 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:10:59.198 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:10:59.198 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:10:59.208 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 23:10:59.208 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:10:59.218 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 14 ms.
17-03-17 23:10:59.218 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-17 23:10:59.228 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:10:59.268 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:10:59.468 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:10:59.468 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:10:59.468 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:10:59.468 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) start.
17-03-17 23:10:59.508 -07 000000478 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:10:59.508 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-17 23:10:59.508 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 285 ms overall
17-03-17 23:10:59.588 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) end. Duration was 123 ms.
17-03-17 23:10:59.588 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:10:59.598 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 23:10:59.598 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 125 ms.
17-03-17 23:10:59.608 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:10:59.608 -07 000000482 INF: Autofocus start
17-03-17 23:10:59.608 -07 000000482 INF: MeasureProfile start
17-03-17 23:10:59.608 -07 000000409 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:10:59.618 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:10:59.618 -07 000000486 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:10:59.618 -07 000000482 INF: MeasureProfile done
17-03-17 23:10:59.618 -07 000000482 INF: X=16  Z correction [um]=0.0530179
17-03-17 23:10:59.618 -07 000000482 INF: Autofocus finished
17-03-17 23:10:59.818 -07 000000627 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:10:59.818 -07 000000486 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-17 23:10:59.818 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83154296875, Z-position -0.134000499660944. ----------
17-03-17 23:10:59.828 -07 000000610 INF: Cycle	72	Tile	19	Exposure Settings		A	468	G	225	T	225	C	468
17-03-17 23:10:59.828 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27795, sync = True, waitForSettling = True)
17-03-17 23:10:59.828 -07 000000610 INF: Z Motor: Moving to -0.127237 mm, started at -0.134000 mm, distance = 6.76 um
17-03-17 23:10:59.828 -07 000000610 INF: FPGA: Xmit ZDACW 27795\n [Z Motor]
17-03-17 23:10:59.828 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 23:10:59.838 -07 000000610 INF: FPGA: 'ZDACW 27795' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:10:59.838 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:10:59.838 -07 000000618 INF: FPGA: Recv ZDACR 27795
17-03-17 23:10:59.848 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:10:59.848 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:10:59.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:10:59.998 -07 000000475 INF: FPGA: Recv ZSGSRD 29091
17-03-17 23:11:00.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:11:00.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:11:00.008 -07 000000502 INF: FPGA: Recv ZSGSRD 29093
17-03-17 23:11:00.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:11:00.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:11:00.018 -07 000000561 INF: FPGA: Recv ZSGSRD 29099
17-03-17 23:11:00.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:11:00.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:11:00.028 -07 000000478 INF: FPGA: Recv ZSGSRD 29094
17-03-17 23:11:00.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:11:00.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:11:00.038 -07 000000618 INF: FPGA: Recv ZSGSRD 29095
17-03-17 23:11:00.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:11:00.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:11:00.048 -07 000000561 INF: FPGA: Recv ZSGSRD 29094
17-03-17 23:11:00.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:11:00.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:11:00.058 -07 000000551 INF: FPGA: Recv ZSGSRD 29101
17-03-17 23:11:00.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:11:00.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:11:00.068 -07 000000547 INF: FPGA: Recv ZSGSRD 29098
17-03-17 23:11:00.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:11:00.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:11:00.078 -07 000000429 INF: FPGA: Recv ZSGSRD 29090
17-03-17 23:11:00.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:11:00.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:11:00.088 -07 000000486 INF: FPGA: Recv ZSGSRD 29102
17-03-17 23:11:00.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:11:00.098 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:11:00.098 -07 000000478 INF: FPGA: Recv ZPIEZORD 24689
17-03-17 23:11:00.108 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:11:00.108 -07 000000610 INF: Z Motor: Piezo is near 32.7 V (nominally 0 to 100 V), expect near 42.4 V, since DAC is at 4.241 V. Piezo Error = -9.7 V.
17-03-17 23:11:00.108 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.2 um, Read 10 ADC samples: Avg = 29096 (-126.5 uncal um), Error = 0.8 uncal um, Median = 29094 (-126.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29090 (-126.4 uncal um), Max = 29102 (-126.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:11:00.108 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29096, posNoise = 6, negNoise = 6
17-03-17 23:11:00.108 -07 000000610 INF: Z Motor: After move to -0.127237, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:11:00.108 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 23:11:00.108 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:11:00.108 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:11:00.108 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:11:00.108 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:11:00.108 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:11:00.108 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:11:00.108 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:11:00.108 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:11:00.108 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:11:00.108 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:11:00.108 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:11:00.108 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:11:00.118 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 23:11:00.118 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:11:00.118 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:11:00.118 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:11:00.118 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 23:11:00.128 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 23:11:00.128 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 23:11:00.128 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:11:00.128 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 468 468 225 225 27972 150\n [Camera]
17-03-17 23:11:00.328 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:11:00.798 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 660
17-03-17 23:11:00.798 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 660
17-03-17 23:11:00.798 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:11:00.798 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:11:00.798 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 23:11:00.798 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 660
17-03-17 23:11:00.798 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 660
17-03-17 23:11:00.798 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:11:00.798 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:11:00.798 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 23:11:00.988 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27972 853
17-03-17 23:11:01.138 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1003
17-03-17 23:11:01.168 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 23:11:01.168 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 23:11:01.168 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:11:01.178 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 23:11:01.178 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 23:11:01.178 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:11:01.178 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:11:01.178 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 23:11:01.178 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:11:01.188 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 23:11:01.358 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1228
17-03-17 23:11:01.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1228
17-03-17 23:11:01.358 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:11:01.358 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:11:01.358 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 23:11:01.368 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1228
17-03-17 23:11:01.368 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1228
17-03-17 23:11:01.368 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:11:01.368 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:11:01.368 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 23:11:01.548 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP 1421
17-03-17 23:11:01.558 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:11:01.558 -07 000000610 INF: FPGA: 'CAMDBLSNAP 468 468 225 225 27972 150' command took 2 ms to send, 1420 ms to get response, and 1427 ms overall
17-03-17 23:11:01.758 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 23:11:01.758 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 23:11:01.758 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:11:01.768 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 23:11:01.768 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 23:11:01.768 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:11:01.768 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:11:01.768 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 23:11:01.768 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 23:11:01.768 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 23:11:01.778 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 23:11:01.818 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 23:11:01.818 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 23:11:01.858 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-17 23:11:01.868 -07 000000610 INF: Enabling Skipping AutoFocus in the next 3 cycles.
17-03-17 23:11:01.868 -07 000000610 INF: Imaging Cycle 72: ScanTilesCommand Cycle 72 time end. Duration was 160474 ms.
17-03-17 23:11:01.868 -07 000000610 INF: =================== Cycle #72 ===================
17-03-17 23:11:01.868 -07 000000610 INF: ===================  ===================
17-03-17 23:11:01.868 -07 000000623 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 23:11:01.868 -07 000000475 INF: FPGA: Recv EXLED1ADCR 26
17-03-17 23:11:01.878 -07 000000623 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:11:01.878 -07 000000623 INF: GreenLED: Using Green data: Photodiode ADC 26 --> 0.0 mW (old method), or 1.9 mW (new method). Difference = 1.9 mW
17-03-17 23:11:01.878 -07 000000623 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 72, FrontChillerTemperature: 4.015368, FrontChillerHeatSinkTemperature: 0.286646, AmbientTemperature: 18.78304, FlowCellCompartmentTemperature: 22.00126, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.483, GreenLEDSensorTemperature: 26.60251, PhotodiodePowerAdcGreen: 26, PhotodiodePowerMwGreen: 1.927049
17-03-17 23:11:01.928 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.