17-03-17 23:11:01.978 -07 000000610 INF: =================== Cycle #73 ===================
17-03-17 23:11:01.978 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-17 23:11:01.978 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8315 mm, delta = 0.5490 mm
17-03-17 23:11:01.978 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:11:01.988 -07 000000382 INF: FPGA: Recv YRDPOS 153255
17-03-17 23:11:01.988 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 23:11:01.988 -07 000000610 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:11:01.988 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-17 23:11:01.988 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-17 23:11:01.988 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-17 23:11:02.038 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:11:02.048 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 72. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1150, R2=1196, Total=2346. Warn if over 250 bubbles per interval.
17-03-17 23:11:02.098 -07 000000551 INF: FPGA: Recv YMVTO 154377 874
17-03-17 23:11:02.098 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 109 ms to get response, and 116 ms overall
17-03-17 23:11:02.098 -07 000000610 INF: Y Motor: Position error before settling = -2 encoder counts (-0.001 mm)
17-03-17 23:11:02.098 -07 000000610 INF: Y Motor: To move from 74.832 to 75.381 (0.549 mm) should take 878 steps, but required 874 steps (0.546 mm). Slippage = -0.003 mm (0.00%).
17-03-17 23:11:02.098 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 116 ms, distance = 0.549 mm, average velocity = 4.733 mm/sec
17-03-17 23:11:02.918 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 73, FrontChillerTemperature: 3.999021,
17-03-17 23:11:05.098 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:11:05.098 -07 000000475 INF: FPGA: Recv YRDPOS 154382
17-03-17 23:11:05.108 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:11:05.108 -07 000000610 INF: Y Motor: Encoder = 154382 = motor step 120610.9 = 75.3818 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:11:05.118 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.001256, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:11:05.118 -07 000000610 INF: Y Motor: Position error after settling = 3 encoder counts (0.001 mm), Delta during settling = 5 counts (0.002 mm)
17-03-17 23:11:05.118 -07 000000610 INF: Y Motor: Moved to 75.3818 after 3140 ms
17-03-17 23:11:05.128 -07 000000610 INF: =================== Cycle #73, Flow Cell Temp 60° ===================
17-03-17 23:11:05.128 -07 000000610 INF: =================== Cycle #73, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-17 23:11:05.128 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-17 23:11:05.128 -07 000000415 INF: FPGA: Recv TEC2TEMP 
17-03-17 23:11:05.138 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:11:05.138 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 23:11:05.138 -07 000000462 INF: FPGA: Recv TEC2EN 
17-03-17 23:11:05.148 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:11:05.148 -07 000000610 INF: =================== Cycle #73, Flow Cell Temp 60° ===================
17-03-17 23:11:05.148 -07 000000610 INF: =================== Cycle #73 ===================
17-03-17 23:11:05.148 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 23:11:05.148 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:11:05.168 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 23:11:05.168 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-17 23:11:05.168 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 23:11:05.468 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 23:11:05.488 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 23:11:05.488 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 23:11:05.538 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:11:05.558 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 23:11:05.558 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 23:11:05.658 -07 000000610 INF: =================== Cycle #73, Pumping Reagent PR2 (3) ===================
17-03-17 23:11:05.658 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 23:11:05.658 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:11:05.688 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 23:11:05.688 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 23:11:05.688 -07 000000610 INF: =================== Cycle #73, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 23:11:05.818 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 23:11:05.858 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:11:07.038 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:11:07.048 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 72. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1150, R2=1196, Total=2346. Warn if over 250 bubbles per interval.
17-03-17 23:11:08.298 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 73, FrontChillerTemperature: 3.978563,
17-03-17 23:11:08.988 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:11:09.018 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:11:09.438 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:11:09.468 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:11:09.888 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:11:09.918 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:11:09.918 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 23:11:09.918 -07 000000610 INF: =================== Cycle #73, Pumping Reagent PR2 (3) ===================
17-03-17 23:11:10.048 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:11:10.078 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 23:11:10.078 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 23:11:10.208 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:11:10.238 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 23:11:10.238 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 23:11:10.238 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 23:11:10.368 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 23:11:10.398 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:11:10.828 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:11:10.858 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:11:10.858 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 23:11:10.858 -07 000000610 INF: =================== Cycle #73 ===================
17-03-17 23:11:12.048 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:11:12.048 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 72. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1150, R2=1196, Total=2346. Warn if over 250 bubbles per interval.
17-03-17 23:11:12.078 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 23:11:12.078 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-17 23:11:12.078 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:11:12.098 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 23:11:12.098 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-17 23:11:12.098 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-17 23:11:12.228 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 23:11:12.248 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-17 23:11:12.248 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-17 23:11:12.298 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:11:12.318 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 23:11:12.318 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 23:11:12.418 -07 000000610 INF: =================== Cycle #73, Pumping Reagent CMS (4) ===================
17-03-17 23:11:12.418 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 23:11:12.418 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:11:12.448 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 23:11:12.448 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 23:11:12.448 -07 000000610 INF: =================== Cycle #73, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-17 23:11:12.578 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 23:11:12.618 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:11:13.658 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 73, FrontChillerTemperature: 3.994908,
17-03-17 23:11:14.058 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:11:14.088 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:11:14.508 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:11:14.538 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:11:14.538 -07 000000610 INF: LanePump: Waited 1920 ms for pump motion to complete
17-03-17 23:11:14.538 -07 000000610 INF: =================== Cycle #73, Pumping Reagent CMS (4) ===================
17-03-17 23:11:14.668 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:11:14.698 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 23:11:14.698 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 23:11:14.828 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:11:14.858 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 23:11:14.858 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 23:11:14.858 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 23:11:14.988 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 23:11:15.018 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:11:15.448 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:11:15.478 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:11:15.478 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 23:11:15.478 -07 000000610 INF: =================== Cycle #73 ===================
17-03-17 23:11:16.698 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 23:11:16.698 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 23:11:16.698 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:11:16.718 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 23:11:16.718 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-17 23:11:16.718 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-17 23:11:16.868 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 23:11:16.888 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-17 23:11:16.888 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-17 23:11:16.938 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:11:16.958 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 23:11:16.958 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 23:11:17.048 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-17 23:11:17.048 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 72. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1151, R2=1197, Total=2348. Warn if over 250 bubbles per interval.
17-03-17 23:11:17.058 -07 000000610 INF: =================== Cycle #73, Pumping Reagent PR2 (3) ===================
17-03-17 23:11:17.058 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 23:11:17.058 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:11:17.088 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 23:11:17.088 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 23:11:17.088 -07 000000610 INF: =================== Cycle #73, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 23:11:17.218 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 23:11:17.258 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:11:18.128 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:11:18.158 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:11:18.158 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 23:11:18.158 -07 000000610 INF: =================== Cycle #73, Pumping Reagent PR2 (3) ===================
17-03-17 23:11:18.288 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:11:18.318 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 23:11:18.318 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 23:11:18.448 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:11:18.478 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 23:11:18.478 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 23:11:18.478 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 23:11:18.608 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 23:11:18.638 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:11:19.028 -07 000000593 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 73, FrontChillerTemperature: 3.988112,
17-03-17 23:11:19.068 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:11:19.098 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:11:19.098 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 23:11:19.098 -07 000000610 INF: =================== Cycle #73 ===================
17-03-17 23:11:19.098 -07 000000627 INF: WaitCommand(10000) start
17-03-17 23:11:19.098 -07 000000415 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 23:11:19.098 -07 000000415 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 23:11:20.318 -07 000000415 INF: AsyncDelayTimer waited 1216ms
17-03-17 23:11:20.318 -07 000000415 INF: LanePump: Xmit /1?\r
17-03-17 23:11:20.348 -07 000000415 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 23:11:20.348 -07 000000415 INF: LanePump: Current Position of Pump is: 1110
17-03-17 23:11:20.478 -07 000000415 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 23:11:20.518 -07 000000415 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:11:22.048 -07 000000415 INF: LanePump: Xmit /1Q\r
17-03-17 23:11:22.048 -07 000000409 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:11:22.048 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 72. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1151, R2=1197, Total=2348. Warn if over 250 bubbles per interval.
17-03-17 23:11:22.078 -07 000000415 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:11:22.498 -07 000000415 INF: LanePump: Xmit /1Q\r
17-03-17 23:11:22.528 -07 000000415 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:11:22.528 -07 000000415 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 23:11:22.528 -07 000000415 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 23:11:22.528 -07 000000415 INF: ===================  ===================
17-03-17 23:11:24.398 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 73, FrontChillerTemperature: 3.981281,
17-03-17 23:11:27.048 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:11:27.048 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 72. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1151, R2=1197, Total=2348. Warn if over 250 bubbles per interval.
17-03-17 23:11:29.108 -07 000000627 INF: WaitCommand(10000) end
17-03-17 23:11:29.108 -07 000000610 INF: =================== Cycle #73, Pumping Reagent PR2 (3) ===================
17-03-17 23:11:29.108 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-17 23:11:29.108 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:11:29.138 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 23:11:29.138 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 23:11:29.138 -07 000000610 INF: =================== Cycle #73, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 23:11:29.268 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-17 23:11:29.308 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:11:29.778 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 73, FrontChillerTemperature: 3.986717,
17-03-17 23:11:32.048 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:11:32.048 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 72. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1151, R2=1197, Total=2348. Warn if over 250 bubbles per interval.
17-03-17 23:11:35.138 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 73, FrontChillerTemperature: 4.008536,
17-03-17 23:11:35.438 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:11:35.468 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:11:35.888 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:11:35.918 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:11:36.338 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:11:36.368 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:11:36.788 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:11:36.818 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:11:37.048 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 2
17-03-17 23:11:37.048 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 72. Bubbles during last 5000 ms interval: R1=2, R2=2, Total=4. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1153, R2=1199, Total=2352. Warn if over 250 bubbles per interval.
17-03-17 23:11:37.238 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:11:37.268 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:11:37.268 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-17 23:11:37.268 -07 000000610 INF: =================== Cycle #73, Pumping Reagent PR2 (3) ===================
17-03-17 23:11:37.398 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:11:37.428 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 23:11:37.428 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 23:11:37.558 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:11:37.588 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 23:11:37.588 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 23:11:37.588 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 23:11:37.718 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 23:11:37.748 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:11:38.178 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:11:38.208 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:11:38.208 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 23:11:38.208 -07 000000610 INF: =================== Cycle #73 ===================
17-03-17 23:11:39.428 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 23:11:39.428 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-17 23:11:39.428 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:11:39.448 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 23:11:39.448 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-17 23:11:39.448 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-17 23:11:39.658 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 23:11:39.678 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-17 23:11:39.678 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-17 23:11:39.728 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:11:39.748 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 23:11:39.748 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 23:11:39.848 -07 000000610 INF: =================== Cycle #73, Pumping Reagent IMT (1) ===================
17-03-17 23:11:39.848 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 23:11:39.848 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:11:39.878 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 23:11:39.878 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 23:11:39.878 -07 000000610 INF: =================== Cycle #73, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-17 23:11:40.008 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 23:11:40.048 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:11:40.508 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 73, FrontChillerTemperature: 4.007176,
17-03-17 23:11:41.488 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:11:41.518 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:11:41.938 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:11:41.968 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:11:41.968 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 23:11:41.968 -07 000000610 INF: =================== Cycle #73, Pumping Reagent IMT (1) ===================
17-03-17 23:11:42.048 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-17 23:11:42.048 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 72. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1154, R2=1200, Total=2354. Warn if over 250 bubbles per interval.
17-03-17 23:11:42.098 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:11:42.128 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 23:11:42.128 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 23:11:42.258 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:11:42.288 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 23:11:42.288 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 23:11:42.288 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 23:11:42.418 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 23:11:42.448 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:11:42.878 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:11:42.908 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:11:42.908 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 23:11:42.908 -07 000000610 INF: =================== Cycle #73 ===================
17-03-17 23:11:44.128 -07 000000610 INF: AsyncDelayTimer waited 1216ms
17-03-17 23:11:44.128 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 23:11:44.128 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:11:44.148 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 23:11:44.148 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-17 23:11:44.148 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 23:11:44.378 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 23:11:44.398 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-17 23:11:44.398 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-17 23:11:44.448 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:11:44.468 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 23:11:44.468 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 23:11:44.568 -07 000000610 INF: =================== Cycle #73, Pumping Reagent PR2 (3) ===================
17-03-17 23:11:44.568 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 23:11:44.568 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:11:44.598 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 23:11:44.598 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 23:11:44.598 -07 000000610 INF: =================== Cycle #73, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 23:11:44.728 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 23:11:44.768 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:11:45.638 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:11:45.668 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:11:45.668 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 23:11:45.668 -07 000000610 INF: =================== Cycle #73, Pumping Reagent PR2 (3) ===================
17-03-17 23:11:45.798 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:11:45.828 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 23:11:45.828 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 23:11:45.878 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 73, FrontChillerTemperature: 4.000345,
17-03-17 23:11:45.958 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:11:45.988 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 23:11:45.988 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 23:11:45.988 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 23:11:46.118 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 23:11:46.148 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:11:46.578 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:11:46.608 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:11:46.608 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 23:11:46.608 -07 000000610 INF: =================== Cycle #73 ===================
17-03-17 23:11:46.608 -07 000000610 INF: =================== Cycle #73, Flow Cell Temp 65° ===================
17-03-17 23:11:46.608 -07 000000610 INF: =================== Cycle #73, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-17 23:11:46.608 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-17 23:11:46.608 -07 000000502 INF: FPGA: Recv TEC2TEMP 
17-03-17 23:11:46.618 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:11:46.618 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 23:11:46.618 -07 000000482 INF: FPGA: Recv TEC2EN 
17-03-17 23:11:46.628 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:11:46.628 -07 000000610 INF: =================== Cycle #73, Flow Cell Temp 65° ===================
17-03-17 23:11:46.628 -07 000000610 INF: =================== Cycle #73 ===================
17-03-17 23:11:46.628 -07 000000610 INF: WaitCommand(30000) start
17-03-17 23:11:47.048 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 23:11:47.048 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 72. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1154, R2=1201, Total=2355. Warn if over 250 bubbles per interval.
17-03-17 23:11:51.248 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 73, FrontChillerTemperature: 3.959467,
17-03-17 23:11:52.048 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:11:52.048 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 72. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1154, R2=1201, Total=2355. Warn if over 250 bubbles per interval.
17-03-17 23:11:56.628 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 73, FrontChillerTemperature: 3.996267,
17-03-17 23:11:57.048 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:11:57.048 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 72. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1154, R2=1201, Total=2355. Warn if over 250 bubbles per interval.
17-03-17 23:12:01.988 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 73, FrontChillerTemperature: 4.001704,
17-03-17 23:12:02.048 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:12:02.048 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 72. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1154, R2=1201, Total=2355. Warn if over 250 bubbles per interval.
17-03-17 23:12:07.048 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:12:07.048 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 72. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1154, R2=1201, Total=2355. Warn if over 250 bubbles per interval.
17-03-17 23:12:07.358 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 73, FrontChillerTemperature: 4.003063,
17-03-17 23:12:12.048 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:12:12.048 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 72. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1154, R2=1201, Total=2355. Warn if over 250 bubbles per interval.
17-03-17 23:12:12.728 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 73, FrontChillerTemperature: 4.005817,
17-03-17 23:12:16.638 -07 000000610 INF: WaitCommand(30000) end
17-03-17 23:12:16.638 -07 000000610 INF: =================== Cycle #73, Pumping Reagent PR2 (3) ===================
17-03-17 23:12:16.638 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-17 23:12:16.738 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:12:16.768 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 23:12:16.768 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 23:12:16.768 -07 000000610 INF: =================== Cycle #73, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 23:12:16.898 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-17 23:12:16.938 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:12:17.048 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:12:17.048 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 72. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1154, R2=1201, Total=2355. Warn if over 250 bubbles per interval.
17-03-17 23:12:17.478 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:12:17.508 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:12:17.508 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-17 23:12:17.508 -07 000000610 INF: =================== Cycle #73, Pumping Reagent PR2 (3) ===================
17-03-17 23:12:17.638 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:12:17.668 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 23:12:17.668 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 23:12:17.798 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:12:17.828 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 23:12:17.828 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 23:12:17.828 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 23:12:17.958 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 23:12:17.988 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:12:18.098 -07 000000409 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 73, FrontChillerTemperature: 4.000345,
17-03-17 23:12:18.418 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:12:18.448 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:12:18.448 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 23:12:18.448 -07 000000610 INF: =================== Cycle #73 ===================
17-03-17 23:12:18.448 -07 000000576 INF: WaitCommand(30000) start
17-03-17 23:12:18.448 -07 000000475 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 23:12:18.448 -07 000000475 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 23:12:19.668 -07 000000475 INF: AsyncDelayTimer waited 1215ms
17-03-17 23:12:19.668 -07 000000475 INF: LanePump: Xmit /1?\r
17-03-17 23:12:19.698 -07 000000475 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 23:12:19.698 -07 000000475 INF: LanePump: Current Position of Pump is: 1920
17-03-17 23:12:19.828 -07 000000475 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 23:12:19.868 -07 000000475 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:12:22.048 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:12:22.048 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 72. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1154, R2=1201, Total=2355. Warn if over 250 bubbles per interval.
17-03-17 23:12:22.208 -07 000000475 INF: LanePump: Xmit /1Q\r
17-03-17 23:12:22.238 -07 000000475 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:12:22.658 -07 000000475 INF: LanePump: Xmit /1Q\r
17-03-17 23:12:22.688 -07 000000475 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:12:22.688 -07 000000475 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-17 23:12:22.688 -07 000000475 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 23:12:22.688 -07 000000475 INF: ===================  ===================
17-03-17 23:12:23.468 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 73, FrontChillerTemperature: 4.008536,
17-03-17 23:12:27.048 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:12:27.048 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 72. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1154, R2=1201, Total=2355. Warn if over 250 bubbles per interval.
17-03-17 23:12:28.848 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 73, FrontChillerTemperature: 4.030322,
17-03-17 23:12:32.048 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:12:32.048 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 72. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1154, R2=1201, Total=2355. Warn if over 250 bubbles per interval.
17-03-17 23:12:34.208 -07 000000593 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 73, FrontChillerTemperature: 4.012614,
17-03-17 23:12:37.048 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:12:37.048 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 72. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1154, R2=1201, Total=2355. Warn if over 250 bubbles per interval.
17-03-17 23:12:39.578 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 73, FrontChillerTemperature: 4.003063,
17-03-17 23:12:42.048 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:12:42.048 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 72. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1154, R2=1201, Total=2355. Warn if over 250 bubbles per interval.
17-03-17 23:12:44.948 -07 000000593 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 73, FrontChillerTemperature: 4.02213,
17-03-17 23:12:47.048 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:12:47.048 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 72. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1154, R2=1201, Total=2355. Warn if over 250 bubbles per interval.
17-03-17 23:12:48.458 -07 000000576 INF: WaitCommand(30000) end
17-03-17 23:12:48.458 -07 000000610 INF: =================== Cycle #73, Flow Cell Temp 22° ===================
17-03-17 23:12:48.458 -07 000000610 INF: =================== Cycle #73, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-17 23:12:48.458 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-17 23:12:48.468 -07 000000462 INF: FPGA: Recv TEC2TEMP 
17-03-17 23:12:48.468 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 23:12:48.468 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 23:12:48.468 -07 000000429 INF: FPGA: Recv TEC2EN 
17-03-17 23:12:48.478 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:12:48.478 -07 000000610 INF: =================== Cycle #73, Flow Cell Temp 22° ===================
17-03-17 23:12:48.478 -07 000000610 INF: =================== Cycle #73 ===================
17-03-17 23:12:48.478 -07 000000610 INF: =================== Cycle #73, Pumping Reagent PR2 (3) ===================
17-03-17 23:12:48.478 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 23:12:48.478 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:12:48.518 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 23:12:48.518 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 23:12:48.518 -07 000000610 INF: =================== Cycle #73, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 23:12:48.648 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 23:12:48.688 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:12:50.318 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 73, FrontChillerTemperature: 4.012614,
17-03-17 23:12:51.818 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:12:51.848 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:12:52.048 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 23:12:52.048 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 72. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1154, R2=1202, Total=2356. Warn if over 250 bubbles per interval.
17-03-17 23:12:52.268 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:12:52.298 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:12:52.718 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:12:52.748 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:12:52.748 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 23:12:52.748 -07 000000610 INF: =================== Cycle #73, Pumping Reagent PR2 (3) ===================
17-03-17 23:12:52.878 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:12:52.908 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 23:12:52.908 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 23:12:53.038 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:12:53.068 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 23:12:53.068 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 23:12:53.068 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 23:12:53.198 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 23:12:53.228 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:12:53.658 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:12:53.688 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:12:53.688 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 23:12:53.688 -07 000000610 INF: =================== Cycle #73 ===================
17-03-17 23:12:54.908 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 23:12:54.908 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-17 23:12:54.908 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:12:54.928 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 23:12:54.928 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-17 23:12:54.928 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-17 23:12:55.078 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 23:12:55.098 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 23:12:55.098 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 23:12:55.148 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:12:55.168 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 23:12:55.168 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 23:12:55.268 -07 000000610 INF: =================== Cycle #73, Pumping Reagent USM (2) ===================
17-03-17 23:12:55.268 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 23:12:55.268 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:12:55.298 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 23:12:55.298 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 23:12:55.298 -07 000000610 INF: =================== Cycle #73, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-17 23:12:55.428 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 23:12:55.468 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:12:55.688 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 73, FrontChillerTemperature: 4.004458,
17-03-17 23:12:56.908 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:12:56.938 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:12:57.048 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:12:57.048 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 72. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1154, R2=1202, Total=2356. Warn if over 250 bubbles per interval.
17-03-17 23:12:57.358 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:12:57.388 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:12:57.388 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 23:12:57.388 -07 000000610 INF: =================== Cycle #73, Pumping Reagent USM (2) ===================
17-03-17 23:12:57.518 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:12:57.548 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 23:12:57.548 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 23:12:57.678 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:12:57.708 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 23:12:57.708 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 23:12:57.708 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 23:12:57.838 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 23:12:57.868 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:12:58.298 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:12:58.328 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:12:58.328 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 23:12:58.328 -07 000000610 INF: =================== Cycle #73 ===================
17-03-17 23:12:59.548 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-17 23:12:59.548 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 23:12:59.548 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:12:59.568 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 23:12:59.568 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-17 23:12:59.568 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 23:12:59.718 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 23:12:59.738 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 23:12:59.738 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 23:12:59.788 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:12:59.808 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 23:12:59.808 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 23:12:59.908 -07 000000610 INF: =================== Cycle #73, Pumping Reagent PR2 (3) ===================
17-03-17 23:12:59.908 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 23:12:59.908 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:12:59.938 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 23:12:59.938 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 23:12:59.938 -07 000000610 INF: =================== Cycle #73, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 23:13:00.068 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 23:13:00.108 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:13:00.978 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:13:01.008 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:13:01.008 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 23:13:01.008 -07 000000610 INF: =================== Cycle #73, Pumping Reagent PR2 (3) ===================
17-03-17 23:13:01.058 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 73, FrontChillerTemperature: 4.003063,
17-03-17 23:13:01.138 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:13:01.168 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 23:13:01.168 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 23:13:01.298 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:13:01.328 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 23:13:01.328 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 23:13:01.328 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 23:13:01.458 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 23:13:01.488 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:13:01.918 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:13:01.948 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:13:01.948 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 23:13:01.948 -07 000000610 INF: =================== Cycle #73 ===================
17-03-17 23:13:01.948 -07 000000478 INF: WaitCommand(10000) start
17-03-17 23:13:01.948 -07 000000448 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 23:13:01.948 -07 000000448 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 23:13:02.048 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:13:02.048 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 72. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1154, R2=1202, Total=2356. Warn if over 250 bubbles per interval.
17-03-17 23:13:03.168 -07 000000448 INF: AsyncDelayTimer waited 1216ms
17-03-17 23:13:03.168 -07 000000448 INF: LanePump: Xmit /1?\r
17-03-17 23:13:03.198 -07 000000448 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 23:13:03.198 -07 000000448 INF: LanePump: Current Position of Pump is: 1110
17-03-17 23:13:03.328 -07 000000448 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 23:13:03.368 -07 000000448 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:13:04.898 -07 000000448 INF: LanePump: Xmit /1Q\r
17-03-17 23:13:04.928 -07 000000448 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:13:05.348 -07 000000448 INF: LanePump: Xmit /1Q\r
17-03-17 23:13:05.378 -07 000000448 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:13:05.378 -07 000000448 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 23:13:05.378 -07 000000448 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 23:13:05.378 -07 000000448 INF: ===================  ===================
17-03-17 23:13:06.428 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 73, FrontChillerTemperature: 3.997626,
17-03-17 23:13:07.048 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:13:07.048 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 72. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1154, R2=1202, Total=2356. Warn if over 250 bubbles per interval.
17-03-17 23:13:11.798 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 73, FrontChillerTemperature: 3.996267,
17-03-17 23:13:11.958 -07 000000478 INF: WaitCommand(10000) end
17-03-17 23:13:11.958 -07 000000610 INF: =================== Cycle #73, Imaging ===================
17-03-17 23:13:11.958 -07 000000610 INF: Imaging Cycle 73: ScanTilesCommand Cycle 73 time start.
17-03-17 23:13:11.968 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-17 23:13:11.968 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:13:11.988 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 23:13:11.988 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-17 23:13:11.988 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-17 23:13:12.048 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:13:12.048 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 72. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1154, R2=1202, Total=2356. Warn if over 250 bubbles per interval.
17-03-17 23:13:12.288 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 23:13:12.308 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 23:13:12.308 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 23:13:12.358 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:13:12.378 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 23:13:12.378 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:13:12.378 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:13:12.378 -07 000000541 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-17 23:13:12.378 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:13:12.378 -07 000000541 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-17 23:13:12.378 -07 000000576 INF: FPGA: Recv EXLED1ON 
17-03-17 23:13:12.388 -07 000000541 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 23:13:12.388 -07 000000541 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-17 23:13:12.388 -07 000000502 INF: FPGA: Recv EXLED1ADCR 23136
17-03-17 23:13:12.398 -07 000000541 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:12.398 -07 000000541 INF: RedLED: Using Red data: Photodiode ADC 23136 --> 7.4 mW (old method), or 205.1 mW (new method). Difference = 197.6 mW
17-03-17 23:13:12.398 -07 000000541 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-17 23:13:12.398 -07 000000561 INF: FPGA: Recv EXLED1OFF 
17-03-17 23:13:12.408 -07 000000541 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:12.408 -07 000000541 INF: RedLED: LED was on for 20 ms
17-03-17 23:13:12.408 -07 000000541 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 23 ms.
17-03-17 23:13:12.408 -07 000000541 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-17 23:13:12.408 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:13:12.408 -07 000000541 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-17 23:13:12.408 -07 000000576 INF: FPGA: Recv EXLED2ON 
17-03-17 23:13:12.418 -07 000000541 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:13:12.418 -07 000000541 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 23:13:12.418 -07 000000482 INF: FPGA: Recv EXLED1ADCR 2098
17-03-17 23:13:12.428 -07 000000541 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:12.428 -07 000000541 INF: GreenLED: Using Green data: Photodiode ADC 2098 --> 0.9 mW (old method), or 182.3 mW (new method). Difference = 181.4 mW
17-03-17 23:13:12.428 -07 000000541 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-17 23:13:12.428 -07 000000448 INF: FPGA: Recv EXLED2OFF 
17-03-17 23:13:12.438 -07 000000541 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:12.438 -07 000000541 INF: GreenLED: LED was on for 19 ms
17-03-17 23:13:12.438 -07 000000541 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-17 23:13:12.438 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 23:13:12.438 -07 000000618 INF: FPGA: Recv EMCUR 
17-03-17 23:13:12.448 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:13:12.448 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-17 23:13:12.948 -07 000000429 INF: FPGA: Recv EMOUT
17-03-17 23:13:12.948 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 23:13:12.948 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-17 23:13:12.948 -07 000000547 INF: FPGA: Recv EMCUR 
17-03-17 23:13:12.958 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:13:12.958 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:13:12.958 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.3818359375, Z-Position -0.127242228487812. ------
17-03-17 23:13:12.958 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:13:12.958 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17931 mm
17-03-17 23:13:12.958 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:13:12.958 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:13:12.958 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 39170, sync = True, waitForSettling = False)
17-03-17 23:13:12.958 -07 000000551 INF: Z Motor: Moving to -0.179309 mm, started at -0.127242 mm, distance = -52.07 um
17-03-17 23:13:12.958 -07 000000627 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 23:13:12.958 -07 000000627 INF: Y Motor: Moving to 59.9126 mm, started at 75.3818 mm, delta = -15.4692 mm
17-03-17 23:13:12.968 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:13:12.968 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:13:12.968 -07 000000541 INF: FPGA: Recv YRDPOS 154382
17-03-17 23:13:12.978 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:13:12.978 -07 000000551 INF: FPGA: Xmit ZDACW 39170\n [Z Motor]
17-03-17 23:13:12.978 -07 000000627 INF: Y Motor: Encoder = 154382 = motor step 120610.9 = 75.3818 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:13:12.978 -07 000000627 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-17 23:13:12.978 -07 000000627 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 23:13:12.978 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 23:13:12.988 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:13:12.988 -07 000000551 INF: FPGA: 'ZDACW 39170' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 23:13:12.998 -07 000000627 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 23:13:13.008 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:13:13.008 -07 000000541 INF: FPGA: Recv ZDACR 39170
17-03-17 23:13:13.018 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:13:13.018 -07 000000551 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 23:13:13.188 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:13:13.188 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 23:13:14.678 -07 000000593 INF: FPGA: Recv YMVTO 122703 24779
17-03-17 23:13:14.678 -07 000000627 INF: FPGA: 'YMVTO 122701' command took 1 ms to send, 1676 ms to get response, and 1705 ms overall
17-03-17 23:13:14.678 -07 000000627 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 23:13:14.678 -07 000000627 INF: Y Motor: To move from 75.382 to 59.913 (-15.469 mm) should take 24751 steps, but required 24779 steps (15.487 mm). Slippage = 0.018 mm (0.00%).
17-03-17 23:13:14.678 -07 000000627 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1706 ms, distance = 15.469 mm, average velocity = 9.068 mm/sec
17-03-17 23:13:17.048 -07 000000409 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:13:17.048 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 72. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1154, R2=1202, Total=2356. Warn if over 250 bubbles per interval.
17-03-17 23:13:17.178 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 73, FrontChillerTemperature: 4.004458,
17-03-17 23:13:17.528 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:13:17.528 -07 000000482 INF: FPGA: Recv YRDPOS 122696
17-03-17 23:13:17.538 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:13:17.538 -07 000000627 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:13:17.558 -07 000000627 INF: Y Motor: After move to 59.912609, error = -0.002453, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:13:17.558 -07 000000627 INF: Y Motor: Position error after settling = -5 encoder counts (-0.002 mm), Delta during settling = -7 counts (-0.003 mm)
17-03-17 23:13:17.558 -07 000000627 INF: Y Motor: Moved to 59.9102 after 4597 ms
17-03-17 23:13:17.558 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.179309 mm (DAC = 39170)
17-03-17 23:13:17.568 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:17.568 -07 000000561 INF: FPGA: Recv ZSGSRD 37205
17-03-17 23:13:17.578 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:13:17.578 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:17.578 -07 000000482 INF: FPGA: Recv ZSGSRD 37202
17-03-17 23:13:17.588 -07 000000618 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:17.588 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:17.588 -07 000000547 INF: FPGA: Recv ZSGSRD 37198
17-03-17 23:13:17.598 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:17.598 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:17.598 -07 000000623 INF: FPGA: Recv ZSGSRD 37200
17-03-17 23:13:17.608 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:17.608 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:17.608 -07 000000593 INF: FPGA: Recv ZSGSRD 37199
17-03-17 23:13:17.618 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:17.618 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:17.618 -07 000000462 INF: FPGA: Recv ZSGSRD 37202
17-03-17 23:13:17.628 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:17.628 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:17.628 -07 000000486 INF: FPGA: Recv ZSGSRD 37198
17-03-17 23:13:17.638 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:17.638 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:17.638 -07 000000502 INF: FPGA: Recv ZSGSRD 37208
17-03-17 23:13:17.648 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:17.648 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:17.648 -07 000000623 INF: FPGA: Recv ZSGSRD 37203
17-03-17 23:13:17.658 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:17.658 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:17.658 -07 000000576 INF: FPGA: Recv ZSGSRD 37201
17-03-17 23:13:17.668 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:17.668 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:13:17.668 -07 000000627 INF: FPGA: Recv ZPIEZORD 33575
17-03-17 23:13:17.678 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:17.678 -07 000000618 INF: Z Motor: Piezo is near 51.7 V (nominally 0 to 100 V), expect near 59.8 V, since DAC is at 5.977 V. Piezo Error = -8.0 V.
17-03-17 23:13:17.678 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.3 um, Read 10 ADC samples: Avg = 37202 (-178.4 uncal um), Error = 0.9 uncal um, Median = 37202 (-178.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 37198 (-178.4 uncal um), Max = 37208 (-178.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:13:17.678 -07 000000618 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37202, posNoise = 6, negNoise = 4
17-03-17 23:13:17.678 -07 000000618 INF: Z Motor: After move to -0.179309, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:13:17.678 -07 000000618 INF: Z Motor: Settle wait time = 4601 ms, measure time = 111 ms (allowed 150 ms), total time = 4712 ms
17-03-17 23:13:17.678 -07 000000618 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 23:13:17.718 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4754 ms
17-03-17 23:13:17.718 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:13:17.718 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:13:17.718 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:13:17.718 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:13:17.718 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:13:17.718 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:13:17.718 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:13:17.718 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:13:17.718 -07 000000429 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 23:13:17.748 -07 000000429 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-17 23:13:17.748 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:13:17.748 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 23:13:17.748 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:13:17.758 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 23:13:17.758 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 43 ms.
17-03-17 23:13:17.768 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:13:17.808 -07 000000547 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:13:18.008 -07 000000409 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:13:18.008 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:13:18.008 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:13:18.008 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) start.
17-03-17 23:13:18.048 -07 000000561 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:13:18.048 -07 000000448 INF: FPGA: Recv CAMSNAP
17-03-17 23:13:18.048 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 285 ms overall
17-03-17 23:13:18.138 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 23:13:18.138 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:13:18.138 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 23:13:18.138 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 23:13:18.148 -07 000000627 INF: Image SNR check: start
17-03-17 23:13:18.148 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:13:18.148 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:13:18.158 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:13:18.158 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:13:18.158 -07 000000627 INF: Image SNR check: pass  [peak (Max-Min)=56.59]
17-03-17 23:13:18.158 -07 000000627 INF: Autofocus start
17-03-17 23:13:18.158 -07 000000627 INF: MeasureProfile start
17-03-17 23:13:18.168 -07 000000627 INF: MeasureProfile done
17-03-17 23:13:18.178 -07 000000627 INF: X=0  Z correction [um]=-0.0713522
17-03-17 23:13:18.178 -07 000000627 INF: Autofocus finished
17-03-17 23:13:18.358 -07 000000593 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:13:18.358 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:13:18.358 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91015625, Z-position -0.179316892108926. ----------
17-03-17 23:13:18.358 -07 000000610 INF: Cycle	73	Tile	1	Exposure Settings		A	470	G	226	T	226	C	470
17-03-17 23:13:18.368 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37667, sync = True, waitForSettling = True)
17-03-17 23:13:18.368 -07 000000610 INF: Z Motor: Moving to -0.172428 mm, started at -0.179317 mm, distance = 6.89 um
17-03-17 23:13:18.368 -07 000000610 INF: FPGA: Xmit ZDACW 37667\n [Z Motor]
17-03-17 23:13:18.368 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 23:13:18.378 -07 000000610 INF: FPGA: 'ZDACW 37667' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:13:18.378 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:13:18.378 -07 000000502 INF: FPGA: Recv ZDACR 37667
17-03-17 23:13:18.388 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:18.388 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:13:18.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:18.538 -07 000000627 INF: FPGA: Recv ZSGSRD 36131
17-03-17 23:13:18.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:13:18.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:18.548 -07 000000429 INF: FPGA: Recv ZSGSRD 36131
17-03-17 23:13:18.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:18.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:18.558 -07 000000593 INF: FPGA: Recv ZSGSRD 36135
17-03-17 23:13:18.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:18.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:18.568 -07 000000502 INF: FPGA: Recv ZSGSRD 36131
17-03-17 23:13:18.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:18.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:18.578 -07 000000482 INF: FPGA: Recv ZSGSRD 36132
17-03-17 23:13:18.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:18.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:18.588 -07 000000627 INF: FPGA: Recv ZSGSRD 36131
17-03-17 23:13:18.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:18.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:18.598 -07 000000501 INF: FPGA: Recv ZSGSRD 36131
17-03-17 23:13:18.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:18.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:18.608 -07 000000415 INF: FPGA: Recv ZSGSRD 36133
17-03-17 23:13:18.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:18.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:18.618 -07 000000501 INF: FPGA: Recv ZSGSRD 36128
17-03-17 23:13:18.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:18.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:18.628 -07 000000561 INF: FPGA: Recv ZSGSRD 36129
17-03-17 23:13:18.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:18.638 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:13:18.638 -07 000000382 INF: FPGA: Recv ZPIEZORD 32133
17-03-17 23:13:18.648 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:18.648 -07 000000610 INF: Z Motor: Piezo is near 48.6 V (nominally 0 to 100 V), expect near 57.5 V, since DAC is at 5.748 V. Piezo Error = -8.8 V.
17-03-17 23:13:18.648 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.4 um, Read 10 ADC samples: Avg = 36131 (-171.6 uncal um), Error = 0.9 uncal um, Median = 36131 (-171.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 36128 (-171.5 uncal um), Max = 36135 (-171.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 23:13:18.648 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36131, posNoise = 4, negNoise = 3
17-03-17 23:13:18.648 -07 000000610 INF: Z Motor: After move to -0.172428, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:13:18.648 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 23:13:18.648 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:13:18.648 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:13:18.648 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:13:18.648 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:13:18.648 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:13:18.648 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:13:18.648 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:13:18.648 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:13:18.648 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:13:18.648 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:13:18.658 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:13:18.658 -07 000000475 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 23:13:18.658 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:13:18.658 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:13:18.668 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 23:13:18.668 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 23:13:18.678 -07 000000475 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-17 23:13:18.678 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:13:18.678 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 23:13:18.678 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:13:18.688 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 23:13:18.688 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 39 ms.
17-03-17 23:13:18.688 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 470 470 226 226 37844 150\n [Camera]
17-03-17 23:13:18.888 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:13:19.368 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 664
17-03-17 23:13:19.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 664
17-03-17 23:13:19.368 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:13:19.368 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:13:19.368 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-17 23:13:19.368 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 664
17-03-17 23:13:19.368 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 664
17-03-17 23:13:19.368 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:13:19.368 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:13:19.368 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 23:13:19.558 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37844 855
17-03-17 23:13:19.708 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1005
17-03-17 23:13:19.768 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 23:13:19.768 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 23:13:19.768 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:13:19.768 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 23:13:19.768 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 23:13:19.768 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:13:19.778 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 23:13:19.778 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 23:13:19.778 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 23:13:19.788 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 23:13:19.938 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1233
17-03-17 23:13:19.938 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1233
17-03-17 23:13:19.938 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:13:19.938 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:13:19.938 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2602438304, 0x0, 391868352) start.
17-03-17 23:13:19.938 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1233
17-03-17 23:13:19.938 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1233
17-03-17 23:13:19.938 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:13:19.938 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:13:19.938 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-17 23:13:20.118 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1424
17-03-17 23:13:20.128 -07 000000623 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:13:20.128 -07 000000610 INF: FPGA: 'CAMDBLSNAP 470 470 226 226 37844 150' command took 2 ms to send, 1420 ms to get response, and 1430 ms overall
17-03-17 23:13:20.128 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:13:20.128 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91015625, Z-Position -0.1724365609051. ------
17-03-17 23:13:20.128 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:13:20.128 -07 000000415 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17840 mm
17-03-17 23:13:20.128 -07 000000415 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:13:20.138 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:13:20.138 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 2 ms to send, 2 ms to get response, and 5 ms overall
17-03-17 23:13:20.138 -07 000000478 INF: Z Motor: Entering MoveAbsStepped (DAC = 38971, sync = True, waitForSettling = False)
17-03-17 23:13:20.138 -07 000000478 INF: Z Motor: Moving to -0.178398 mm, started at -0.172437 mm, distance = -5.96 um
17-03-17 23:13:20.138 -07 000000478 INF: FPGA: Xmit ZDACW 38971\n [Z Motor]
17-03-17 23:13:20.138 -07 000000551 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 23:13:20.138 -07 000000551 INF: Y Motor: Moving to 60.7426 mm, started at 59.9102 mm, delta = 0.8325 mm
17-03-17 23:13:20.138 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 23:13:20.148 -07 000000478 INF: FPGA: 'ZDACW 38971' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:13:20.148 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:13:20.158 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:13:20.158 -07 000000482 INF: FPGA: Recv YRDPOS 122696
17-03-17 23:13:20.168 -07 000000478 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:13:20.168 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 23:13:20.168 -07 000000551 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:13:20.168 -07 000000551 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:13:20.168 -07 000000551 INF: Y Motor: Moving 1332 steps2
17-03-17 23:13:20.168 -07 000000448 INF: FPGA: Recv ZDACR 38971
17-03-17 23:13:20.178 -07 000000478 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:13:20.178 -07 000000478 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-17 23:13:20.178 -07 000000551 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:13:20.338 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2602438304, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 23:13:20.338 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 23:13:20.338 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:13:20.338 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 23:13:20.338 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 23:13:20.338 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:13:20.348 -07 000000409 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:13:20.348 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 210 ms overall
17-03-17 23:13:20.348 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-17 23:13:20.348 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 23:13:20.348 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 23:13:20.358 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-17 23:13:20.548 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-17 23:13:20.548 -07 000000551 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 23:13:20.588 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:13:20.588 -07 000000618 INF: FPGA: Recv YRDPOS 124379
17-03-17 23:13:20.598 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:13:20.598 -07 000000551 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:13:20.598 -07 000000551 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-17 23:13:20.598 -07 000000551 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.832 mm, average velocity = 2.151 mm/sec
17-03-17 23:13:21.548 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:13:21.548 -07 000000576 INF: FPGA: Recv YRDPOS 124379
17-03-17 23:13:21.558 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:13:21.558 -07 000000551 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:13:21.578 -07 000000551 INF: Y Motor: After move to 60.742607, error = -0.010674, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:13:21.578 -07 000000551 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:13:21.578 -07 000000551 INF: Y Motor: Moved to 60.7319 after 1444 ms (table move)
17-03-17 23:13:21.588 -07 000000415 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178398 mm (DAC = 38971)
17-03-17 23:13:21.588 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:21.588 -07 000000618 INF: FPGA: Recv ZSGSRD 37066
17-03-17 23:13:21.598 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:13:21.598 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:21.598 -07 000000547 INF: FPGA: Recv ZSGSRD 37063
17-03-17 23:13:21.608 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:21.608 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:21.608 -07 000000627 INF: FPGA: Recv ZSGSRD 37059
17-03-17 23:13:21.618 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:21.618 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:21.618 -07 000000618 INF: FPGA: Recv ZSGSRD 37065
17-03-17 23:13:21.628 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:21.628 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:21.628 -07 000000547 INF: FPGA: Recv ZSGSRD 37063
17-03-17 23:13:21.638 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:21.638 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:21.638 -07 000000627 INF: FPGA: Recv ZSGSRD 37058
17-03-17 23:13:21.648 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:21.648 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:21.648 -07 000000623 INF: FPGA: Recv ZSGSRD 37057
17-03-17 23:13:21.658 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:21.658 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:21.658 -07 000000409 INF: FPGA: Recv ZSGSRD 37054
17-03-17 23:13:21.668 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:21.668 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:21.668 -07 000000448 INF: FPGA: Recv ZSGSRD 37065
17-03-17 23:13:21.678 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:21.678 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:21.678 -07 000000482 INF: FPGA: Recv ZSGSRD 37065
17-03-17 23:13:21.688 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:21.688 -07 000000415 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:13:21.688 -07 000000551 INF: FPGA: Recv ZPIEZORD 33361
17-03-17 23:13:21.698 -07 000000415 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:21.698 -07 000000415 INF: Z Motor: Piezo is near 51.3 V (nominally 0 to 100 V), expect near 59.5 V, since DAC is at 5.947 V. Piezo Error = -8.2 V.
17-03-17 23:13:21.698 -07 000000415 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.4 um, Read 10 ADC samples: Avg = 37062 (-177.5 uncal um), Error = 0.9 uncal um, Median = 37063 (-177.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 37054 (-177.5 uncal um), Max = 37066 (-177.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 23:13:21.698 -07 000000415 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37062, posNoise = 4, negNoise = 8
17-03-17 23:13:21.698 -07 000000415 INF: Z Motor: After move to -0.178398, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:13:21.698 -07 000000415 INF: Z Motor: Settle wait time = 1448 ms, measure time = 110 ms (allowed 150 ms), total time = 1558 ms
17-03-17 23:13:21.698 -07 000000415 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 23:13:21.738 -07 000000415 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1601 ms
17-03-17 23:13:21.738 -07 000000415 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:13:21.738 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:13:21.738 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:13:21.738 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:13:21.738 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:13:21.738 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:13:21.738 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:13:21.738 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 23:13:21.738 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:13:21.748 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:13:21.748 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:13:21.758 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 23:13:21.758 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 23:13:21.758 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:13:21.808 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:13:22.008 -07 000000475 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:13:22.008 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:13:22.008 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:13:22.008 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2402648392, 0x0, 559484976) start.
17-03-17 23:13:22.048 -07 000000623 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:13:22.048 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-17 23:13:22.048 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 23:13:22.048 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:13:22.138 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2402648392, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 23:13:22.138 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:13:22.138 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 23:13:22.138 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 23:13:22.138 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 72. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1154, R2=1202, Total=2356. Warn if over 250 bubbles per interval.
17-03-17 23:13:22.148 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:13:22.148 -07 000000429 INF: Autofocus start
17-03-17 23:13:22.148 -07 000000429 INF: MeasureProfile start
17-03-17 23:13:22.148 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:13:22.158 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:13:22.158 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:13:22.158 -07 000000429 INF: MeasureProfile done
17-03-17 23:13:22.158 -07 000000429 INF: X=16  Z correction [um]=0.01042744
17-03-17 23:13:22.158 -07 000000429 INF: Autofocus finished
17-03-17 23:13:22.358 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:13:22.358 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:13:22.358 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73193359375, Z-position -0.17841750240908. ----------
17-03-17 23:13:22.358 -07 000000610 INF: Cycle	73	Tile	2	Exposure Settings		A	470	G	226	T	226	C	470
17-03-17 23:13:22.368 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37486, sync = True, waitForSettling = True)
17-03-17 23:13:22.368 -07 000000610 INF: Z Motor: Moving to -0.171600 mm, started at -0.178418 mm, distance = 6.82 um
17-03-17 23:13:22.368 -07 000000610 INF: FPGA: Xmit ZDACW 37486\n [Z Motor]
17-03-17 23:13:22.368 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 23:13:22.378 -07 000000610 INF: FPGA: 'ZDACW 37486' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:13:22.378 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:13:22.378 -07 000000448 INF: FPGA: Recv ZDACR 37486
17-03-17 23:13:22.388 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:22.388 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:13:22.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:22.538 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 73, FrontChillerTemperature: 3.997626,
17-03-17 23:13:22.538 -07 000000409 INF: FPGA: Recv ZSGSRD 36002
17-03-17 23:13:22.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:13:22.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:22.568 -07 000000478 INF: FPGA: Recv ZSGSRD 36003
17-03-17 23:13:22.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:13:22.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:22.578 -07 000000409 INF: FPGA: Recv ZSGSRD 36003
17-03-17 23:13:22.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:22.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:22.598 -07 000000561 INF: FPGA: Recv ZSGSRD 35999
17-03-17 23:13:22.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:13:22.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:22.608 -07 000000486 INF: FPGA: Recv ZSGSRD 36006
17-03-17 23:13:22.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:13:22.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:22.628 -07 000000415 INF: FPGA: Recv ZSGSRD 36000
17-03-17 23:13:22.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:13:22.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:22.638 -07 000000486 INF: FPGA: Recv ZSGSRD 36008
17-03-17 23:13:22.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:22.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:22.658 -07 000000415 INF: FPGA: Recv ZSGSRD 36004
17-03-17 23:13:22.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:13:22.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:22.668 -07 000000576 INF: FPGA: Recv ZSGSRD 36002
17-03-17 23:13:22.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:22.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:22.678 -07 000000501 INF: FPGA: Recv ZSGSRD 35997
17-03-17 23:13:22.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:22.688 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:13:22.688 -07 000000478 INF: FPGA: Recv ZPIEZORD 31977
17-03-17 23:13:22.698 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:22.698 -07 000000610 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.720 V. Piezo Error = -8.9 V.
17-03-17 23:13:22.698 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.6 um, Read 10 ADC samples: Avg = 36002 (-170.7 uncal um), Error = 0.9 uncal um, Median = 36002 (-170.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35997 (-170.7 uncal um), Max = 36008 (-170.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:13:22.698 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36002, posNoise = 6, negNoise = 5
17-03-17 23:13:22.698 -07 000000610 INF: Z Motor: After move to -0.171600, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:13:22.698 -07 000000610 INF: Z Motor: MoveAbsStepped took 329 ms)
17-03-17 23:13:22.698 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:13:22.698 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:13:22.698 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:13:22.698 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:13:22.698 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:13:22.698 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:13:22.698 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:13:22.698 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:13:22.698 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:13:22.698 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:13:22.698 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:13:22.698 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:13:22.708 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:13:22.708 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:13:22.708 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:13:22.708 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:13:22.718 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 17 ms.
17-03-17 23:13:22.718 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 23:13:22.718 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 17 ms.
17-03-17 23:13:22.728 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 23:13:22.728 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 470 470 226 226 37663 150\n [Camera]
17-03-17 23:13:22.928 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:13:23.398 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 662
17-03-17 23:13:23.398 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 662
17-03-17 23:13:23.398 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:13:23.398 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:13:23.398 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start.
17-03-17 23:13:23.398 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 662
17-03-17 23:13:23.398 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 662
17-03-17 23:13:23.408 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:13:23.408 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:13:23.408 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) start.
17-03-17 23:13:23.588 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37663 855
17-03-17 23:13:23.738 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1005
17-03-17 23:13:23.798 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 23:13:23.798 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 23:13:23.798 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:13:23.798 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:13:23.798 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 23:13:23.808 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 23:13:23.808 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 23:13:23.808 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:13:23.808 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:13:23.818 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 23:13:23.968 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1231
17-03-17 23:13:23.968 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1231
17-03-17 23:13:23.968 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:13:24.108 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1231
17-03-17 23:13:24.108 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1231
17-03-17 23:13:24.108 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:13:24.118 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:13:24.118 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 23:13:24.118 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:13:24.118 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 23:13:24.158 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1423
17-03-17 23:13:24.158 -07 000000486 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:13:24.158 -07 000000610 INF: FPGA: 'CAMDBLSNAP 470 470 226 226 37663 150' command took 2 ms to send, 1425 ms to get response, and 1433 ms overall
17-03-17 23:13:24.158 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:13:24.158 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73193359375, Z-Position -0.171607837538813. ------
17-03-17 23:13:24.168 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:13:24.168 -07 000000478 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17827 mm
17-03-17 23:13:24.168 -07 000000478 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:13:24.168 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:13:24.168 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 23:13:24.168 -07 000000541 INF: Y Motor: Moving to 61.5726 mm, started at 60.7319 mm, delta = 0.8407 mm
17-03-17 23:13:24.168 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 38943, sync = True, waitForSettling = False)
17-03-17 23:13:24.168 -07 000000623 INF: Z Motor: Moving to -0.178270 mm, started at -0.171608 mm, distance = -6.66 um
17-03-17 23:13:24.178 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:13:24.178 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:13:24.178 -07 000000501 INF: FPGA: Recv YRDPOS 124379
17-03-17 23:13:24.188 -07 000000623 INF: FPGA: Xmit ZDACW 38943\n [Z Motor]
17-03-17 23:13:24.188 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 23:13:24.188 -07 000000541 INF: Y Motor: Encoder = 124379 = motor step 97171.1 = 60.7319 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:13:24.188 -07 000000541 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:13:24.188 -07 000000541 INF: Y Motor: Moving 1345 steps-22
17-03-17 23:13:24.188 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 23:13:24.198 -07 000000551 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:13:24.198 -07 000000623 INF: FPGA: 'ZDACW 38943' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 23:13:24.208 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:13:24.218 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:13:24.218 -07 000000462 INF: FPGA: Recv ZDACR 38943
17-03-17 23:13:24.228 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:13:24.228 -07 000000623 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-17 23:13:24.398 -07 000000486 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:13:24.398 -07 000000551 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 23:13:24.508 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 23:13:24.508 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 23:13:24.508 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:13:24.518 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 23:13:24.518 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 23:13:24.518 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:13:24.518 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:13:24.518 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 548 ms.
17-03-17 23:13:24.518 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:13:24.528 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 23:13:24.578 -07 000000593 INF: FPGA: Recv YMVTILE
17-03-17 23:13:24.578 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 23:13:24.618 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:13:24.628 -07 000000551 INF: FPGA: Recv YRDPOS 126080
17-03-17 23:13:24.628 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 23:13:24.628 -07 000000541 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:13:24.628 -07 000000541 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-17 23:13:24.628 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.841 mm, average velocity = 2.118 mm/sec
17-03-17 23:13:25.578 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:13:25.578 -07 000000547 INF: FPGA: Recv YRDPOS 126080
17-03-17 23:13:25.588 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:13:25.588 -07 000000541 INF: Y Motor: Encoder = 126080 = motor step 98500.0 = 61.5625 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:13:25.608 -07 000000541 INF: Y Motor: After move to 61.572609, error = -0.010109, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:13:25.608 -07 000000541 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:13:25.608 -07 000000541 INF: Y Motor: Moved to 61.5625 after 1442 ms (table move)
17-03-17 23:13:25.608 -07 000000478 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178270 mm (DAC = 38943)
17-03-17 23:13:25.608 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:25.618 -07 000000501 INF: FPGA: Recv ZSGSRD 37041
17-03-17 23:13:25.618 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 23:13:25.618 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:25.618 -07 000000486 INF: FPGA: Recv ZSGSRD 37046
17-03-17 23:13:25.628 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:13:25.628 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:25.628 -07 000000627 INF: FPGA: Recv ZSGSRD 37041
17-03-17 23:13:25.638 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:13:25.638 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:25.638 -07 000000576 INF: FPGA: Recv ZSGSRD 37039
17-03-17 23:13:25.648 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:25.648 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:25.648 -07 000000593 INF: FPGA: Recv ZSGSRD 37037
17-03-17 23:13:25.658 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:25.658 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:25.658 -07 000000429 INF: FPGA: Recv ZSGSRD 37049
17-03-17 23:13:25.668 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:25.668 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:25.668 -07 000000475 INF: FPGA: Recv ZSGSRD 37044
17-03-17 23:13:25.678 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:25.678 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:25.678 -07 000000502 INF: FPGA: Recv ZSGSRD 37040
17-03-17 23:13:25.688 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:25.688 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:25.688 -07 000000462 INF: FPGA: Recv ZSGSRD 37030
17-03-17 23:13:25.698 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:25.698 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:25.698 -07 000000486 INF: FPGA: Recv ZSGSRD 37038
17-03-17 23:13:25.708 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:25.708 -07 000000478 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:13:25.708 -07 000000541 INF: FPGA: Recv ZPIEZORD 33370
17-03-17 23:13:25.718 -07 000000478 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:25.718 -07 000000478 INF: Z Motor: Piezo is near 51.3 V (nominally 0 to 100 V), expect near 59.4 V, since DAC is at 5.942 V. Piezo Error = -8.1 V.
17-03-17 23:13:25.718 -07 000000478 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.3 um, Read 10 ADC samples: Avg = 37040 (-177.4 uncal um), Error = 0.9 uncal um, Median = 37040 (-177.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 37030 (-177.3 uncal um), Max = 37049 (-177.4 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 23:13:25.718 -07 000000478 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37040, posNoise = 9, negNoise = 10
17-03-17 23:13:25.718 -07 000000478 INF: Z Motor: After move to -0.178270, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:13:25.718 -07 000000478 INF: Z Motor: Settle wait time = 1445 ms, measure time = 101 ms (allowed 150 ms), total time = 1546 ms
17-03-17 23:13:25.718 -07 000000478 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 23:13:25.768 -07 000000478 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-17 23:13:25.768 -07 000000478 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:13:25.768 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:13:25.768 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:13:25.768 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:13:25.768 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:13:25.768 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:13:25.768 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:13:25.768 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:13:25.768 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:13:25.778 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:13:25.778 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:13:25.788 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 23:13:25.788 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 23:13:25.788 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:13:25.838 -07 000000475 INF: FPGA: Recv @CAMSNAP turning led on 43
17-03-17 23:13:26.038 -07 000000448 INF: FPGA: Recv @CAMSNAP img rdy 243
17-03-17 23:13:26.038 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 243
17-03-17 23:13:26.038 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:13:26.038 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2468220576, 0x0, 559484976) start.
17-03-17 23:13:26.068 -07 000000547 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:13:26.068 -07 000000482 INF: FPGA: Recv CAMSNAP
17-03-17 23:13:26.068 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 23:13:26.168 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2468220576, 0x0, 559484976) end. Duration was 124 ms.
17-03-17 23:13:26.168 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:13:26.168 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 23:13:26.168 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 23:13:26.268 -07 000000409 INF: Autofocus start
17-03-17 23:13:26.268 -07 000000409 INF: MeasureProfile start
17-03-17 23:13:26.268 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:13:26.268 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:13:26.278 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:13:26.278 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:13:26.278 -07 000000409 INF: MeasureProfile done
17-03-17 23:13:26.278 -07 000000409 INF: X=16  Z correction [um]=0.01042744
17-03-17 23:13:26.278 -07 000000409 INF: Autofocus finished
17-03-17 23:13:26.478 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:13:26.478 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:13:26.478 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.5625, Z-position -0.178276169741961. ----------
17-03-17 23:13:26.488 -07 000000610 INF: Cycle	73	Tile	3	Exposure Settings		A	470	G	226	T	226	C	470
17-03-17 23:13:26.488 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37458, sync = True, waitForSettling = True)
17-03-17 23:13:26.488 -07 000000610 INF: Z Motor: Moving to -0.171472 mm, started at -0.178276 mm, distance = 6.80 um
17-03-17 23:13:26.488 -07 000000610 INF: FPGA: Xmit ZDACW 37458\n [Z Motor]
17-03-17 23:13:26.498 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 23:13:26.498 -07 000000610 INF: FPGA: 'ZDACW 37458' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 23:13:26.498 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:13:26.498 -07 000000541 INF: FPGA: Recv ZDACR 37458
17-03-17 23:13:26.508 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:13:26.508 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:13:26.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:26.658 -07 000000382 INF: FPGA: Recv ZSGSRD 35985
17-03-17 23:13:26.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:13:26.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:26.668 -07 000000448 INF: FPGA: Recv ZSGSRD 35983
17-03-17 23:13:26.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:26.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:26.678 -07 000000593 INF: FPGA: Recv ZSGSRD 35982
17-03-17 23:13:26.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:26.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:26.688 -07 000000415 INF: FPGA: Recv ZSGSRD 35986
17-03-17 23:13:26.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:26.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:26.698 -07 000000502 INF: FPGA: Recv ZSGSRD 35982
17-03-17 23:13:26.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:26.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:26.708 -07 000000478 INF: FPGA: Recv ZSGSRD 35977
17-03-17 23:13:26.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:26.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:26.718 -07 000000627 INF: FPGA: Recv ZSGSRD 35988
17-03-17 23:13:26.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:26.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:26.728 -07 000000618 INF: FPGA: Recv ZSGSRD 35982
17-03-17 23:13:26.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:26.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:26.738 -07 000000415 INF: FPGA: Recv ZSGSRD 35983
17-03-17 23:13:26.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:26.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:26.748 -07 000000551 INF: FPGA: Recv ZSGSRD 35981
17-03-17 23:13:26.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:26.758 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:13:26.758 -07 000000382 INF: FPGA: Recv ZPIEZORD 31936
17-03-17 23:13:26.768 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:26.768 -07 000000610 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.716 V. Piezo Error = -8.9 V.
17-03-17 23:13:26.768 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.5 um, Read 10 ADC samples: Avg = 35983 (-170.6 uncal um), Error = 0.9 uncal um, Median = 35982 (-170.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35977 (-170.6 uncal um), Max = 35988 (-170.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:13:26.768 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35983, posNoise = 5, negNoise = 6
17-03-17 23:13:26.768 -07 000000610 INF: Z Motor: After move to -0.171472, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:13:26.768 -07 000000610 INF: Z Motor: MoveAbsStepped took 272 ms)
17-03-17 23:13:26.768 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:13:26.768 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:13:26.768 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:13:26.768 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:13:26.768 -07 000000409 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:13:26.768 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:13:26.768 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:13:26.768 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:13:26.778 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:13:26.778 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:13:26.778 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:13:26.778 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:13:26.778 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 23:13:26.778 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 23:13:26.778 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:13:26.778 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:13:26.788 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 23:13:26.788 -07 000000409 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:13:26.788 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 23:13:26.788 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 23:13:26.788 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 470 470 226 226 37634 150\n [Camera]
17-03-17 23:13:26.988 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:13:27.048 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:13:27.048 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 72. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1154, R2=1202, Total=2356. Warn if over 250 bubbles per interval.
17-03-17 23:13:27.468 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 662
17-03-17 23:13:27.468 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 662
17-03-17 23:13:27.468 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:13:27.468 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 662
17-03-17 23:13:27.468 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 662
17-03-17 23:13:27.468 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:13:27.588 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:13:27.588 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 23:13:27.588 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:13:27.588 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 23:13:27.658 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37634 855
17-03-17 23:13:27.808 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1005
17-03-17 23:13:27.958 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 23:13:27.958 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 23:13:27.958 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:13:27.958 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 369 ms.
17-03-17 23:13:27.958 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-17 23:13:27.958 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:13:27.968 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:13:27.968 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 499 ms.
17-03-17 23:13:27.968 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:13:27.978 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 505 ms.
17-03-17 23:13:27.978 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 73, FrontChillerTemperature: 3.981281,
17-03-17 23:13:28.028 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1231
17-03-17 23:13:28.028 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1231
17-03-17 23:13:28.028 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:13:28.038 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1231
17-03-17 23:13:28.038 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1231
17-03-17 23:13:28.038 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:13:28.038 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:13:28.038 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 23:13:28.048 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:13:28.048 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2482896656, 0x0, 418435064) start.
17-03-17 23:13:28.218 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1424
17-03-17 23:13:28.218 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:13:28.218 -07 000000610 INF: FPGA: 'CAMDBLSNAP 470 470 226 226 37634 150' command took 2 ms to send, 1419 ms to get response, and 1430 ms overall
17-03-17 23:13:28.228 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:13:28.228 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.5625, Z-Position -0.171485777508119. ------
17-03-17 23:13:28.228 -07 000000593 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17776 mm
17-03-17 23:13:28.228 -07 000000593 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:13:28.228 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:13:28.228 -07 000000409 INF: Z Motor: Entering MoveAbsStepped (DAC = 38832, sync = True, waitForSettling = False)
17-03-17 23:13:28.228 -07 000000409 INF: Z Motor: Moving to -0.177762 mm, started at -0.171486 mm, distance = -6.28 um
17-03-17 23:13:28.228 -07 000000627 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 23:13:28.228 -07 000000627 INF: Y Motor: Moving to 62.4026 mm, started at 61.5625 mm, delta = 0.8401 mm
17-03-17 23:13:28.238 -07 000000409 INF: FPGA: Xmit ZDACW 38832\n [Z Motor]
17-03-17 23:13:28.238 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:13:28.238 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 4 ms overall
17-03-17 23:13:28.238 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 23:13:28.248 -07 000000409 INF: FPGA: 'ZDACW 38832' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:13:28.248 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:13:28.248 -07 000000576 INF: FPGA: Recv YRDPOS 126081
17-03-17 23:13:28.258 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 23:13:28.258 -07 000000475 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:13:28.258 -07 000000627 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:13:28.258 -07 000000627 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:13:28.258 -07 000000627 INF: Y Motor: Moving 1343 steps-21
17-03-17 23:13:28.268 -07 000000409 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:13:28.268 -07 000000541 INF: FPGA: Recv ZDACR 38832
17-03-17 23:13:28.278 -07 000000627 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:13:28.278 -07 000000409 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:13:28.278 -07 000000409 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-17 23:13:28.428 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 23:13:28.428 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 23:13:28.428 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:13:28.428 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2482896656, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 23:13:28.428 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 23:13:28.428 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:13:28.428 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 23:13:28.438 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 23:13:28.438 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:13:28.438 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 23:13:28.458 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:13:28.458 -07 000000475 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-17 23:13:28.648 -07 000000623 INF: FPGA: Recv YMVTILE
17-03-17 23:13:28.648 -07 000000627 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 23:13:28.688 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:13:28.698 -07 000000382 INF: FPGA: Recv YRDPOS 127783
17-03-17 23:13:28.698 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 23:13:28.698 -07 000000627 INF: Y Motor: Encoder = 127783 = motor step 99830.5 = 62.3940 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:13:28.698 -07 000000627 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 23:13:28.698 -07 000000627 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.840 mm, average velocity = 2.138 mm/sec
17-03-17 23:13:29.648 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:13:29.648 -07 000000482 INF: FPGA: Recv YRDPOS 127784
17-03-17 23:13:29.658 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:13:29.658 -07 000000627 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:13:29.678 -07 000000627 INF: Y Motor: After move to 62.402607, error = -0.008076, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:13:29.678 -07 000000627 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 23:13:29.678 -07 000000627 INF: Y Motor: Moved to 62.3945 after 1447 ms (table move)
17-03-17 23:13:29.688 -07 000000593 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177762 mm (DAC = 38832)
17-03-17 23:13:29.688 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:29.688 -07 000000475 INF: FPGA: Recv ZSGSRD 36960
17-03-17 23:13:29.698 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:29.698 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:29.698 -07 000000618 INF: FPGA: Recv ZSGSRD 36960
17-03-17 23:13:29.708 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:29.708 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:29.708 -07 000000486 INF: FPGA: Recv ZSGSRD 36964
17-03-17 23:13:29.718 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:29.718 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:29.718 -07 000000551 INF: FPGA: Recv ZSGSRD 36971
17-03-17 23:13:29.728 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:29.728 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:29.728 -07 000000576 INF: FPGA: Recv ZSGSRD 36960
17-03-17 23:13:29.738 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:29.738 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:29.738 -07 000000462 INF: FPGA: Recv ZSGSRD 36955
17-03-17 23:13:29.748 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:29.748 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:29.748 -07 000000382 INF: FPGA: Recv ZSGSRD 36971
17-03-17 23:13:29.758 -07 000000593 INF: FPGA: 'ZSGSRD' command took 3 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:29.758 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:29.758 -07 000000561 INF: FPGA: Recv ZSGSRD 36962
17-03-17 23:13:29.768 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:29.768 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:29.768 -07 000000502 INF: FPGA: Recv ZSGSRD 36961
17-03-17 23:13:29.778 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:29.778 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:29.778 -07 000000561 INF: FPGA: Recv ZSGSRD 36959
17-03-17 23:13:29.788 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:29.788 -07 000000593 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:13:29.788 -07 000000475 INF: FPGA: Recv ZPIEZORD 33296
17-03-17 23:13:29.798 -07 000000593 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:29.798 -07 000000593 INF: Z Motor: Piezo is near 51.1 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.925 V. Piezo Error = -8.1 V.
17-03-17 23:13:29.798 -07 000000593 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.8 um, Read 10 ADC samples: Avg = 36962 (-176.9 uncal um), Error = 0.9 uncal um, Median = 36960 (-176.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36955 (-176.8 uncal um), Max = 36971 (-176.9 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 23:13:29.798 -07 000000593 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36962, posNoise = 9, negNoise = 7
17-03-17 23:13:29.798 -07 000000593 INF: Z Motor: After move to -0.177762, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:13:29.798 -07 000000593 INF: Z Motor: Settle wait time = 1450 ms, measure time = 111 ms (allowed 150 ms), total time = 1561 ms
17-03-17 23:13:29.798 -07 000000593 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 23:13:29.838 -07 000000593 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-17 23:13:29.838 -07 000000593 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:13:29.838 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:13:29.838 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:13:29.838 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:13:29.838 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:13:29.838 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:13:29.838 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:13:29.838 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:13:29.838 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:13:29.848 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 23:13:29.848 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:13:29.848 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 23:13:29.848 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 23:13:29.858 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:13:29.898 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:13:30.098 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:13:30.098 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:13:30.098 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:13:30.098 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2468220576, 0x0, 559484976) start.
17-03-17 23:13:30.138 -07 000000547 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:13:30.138 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 23:13:30.138 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 284 ms overall
17-03-17 23:13:30.218 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2468220576, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 23:13:30.218 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:13:30.218 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:13:30.218 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-17 23:13:30.238 -07 000000462 INF: Autofocus start
17-03-17 23:13:30.238 -07 000000462 INF: MeasureProfile start
17-03-17 23:13:30.238 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:13:30.238 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:13:30.248 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 2 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:13:30.248 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:13:30.248 -07 000000462 INF: MeasureProfile done
17-03-17 23:13:30.248 -07 000000462 INF: X=16  Z correction [um]=0.01042744
17-03-17 23:13:30.248 -07 000000462 INF: Autofocus finished
17-03-17 23:13:30.448 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:13:30.448 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:13:30.448 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39453125, Z-position -0.177775081194903. ----------
17-03-17 23:13:30.448 -07 000000610 INF: Cycle	73	Tile	4	Exposure Settings		A	470	G	226	T	226	C	470
17-03-17 23:13:30.458 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37347, sync = True, waitForSettling = True)
17-03-17 23:13:30.458 -07 000000610 INF: Z Motor: Moving to -0.170964 mm, started at -0.177775 mm, distance = 6.81 um
17-03-17 23:13:30.458 -07 000000610 INF: FPGA: Xmit ZDACW 37347\n [Z Motor]
17-03-17 23:13:30.458 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 23:13:30.468 -07 000000610 INF: FPGA: 'ZDACW 37347' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:13:30.468 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:13:30.468 -07 000000486 INF: FPGA: Recv ZDACR 37347
17-03-17 23:13:30.478 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:30.478 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:13:30.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:30.628 -07 000000482 INF: FPGA: Recv ZSGSRD 35901
17-03-17 23:13:30.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:13:30.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:30.638 -07 000000478 INF: FPGA: Recv ZSGSRD 35910
17-03-17 23:13:30.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:30.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:30.648 -07 000000429 INF: FPGA: Recv ZSGSRD 35900
17-03-17 23:13:30.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:30.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:30.658 -07 000000448 INF: FPGA: Recv ZSGSRD 35900
17-03-17 23:13:30.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:30.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:30.668 -07 000000486 INF: FPGA: Recv ZSGSRD 35899
17-03-17 23:13:30.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:30.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:30.678 -07 000000482 INF: FPGA: Recv ZSGSRD 35904
17-03-17 23:13:30.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:30.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:30.688 -07 000000478 INF: FPGA: Recv ZSGSRD 35909
17-03-17 23:13:30.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:30.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:30.698 -07 000000429 INF: FPGA: Recv ZSGSRD 35901
17-03-17 23:13:30.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:30.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:30.708 -07 000000448 INF: FPGA: Recv ZSGSRD 35901
17-03-17 23:13:30.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:30.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:30.718 -07 000000486 INF: FPGA: Recv ZSGSRD 35905
17-03-17 23:13:30.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:30.728 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:13:30.728 -07 000000618 INF: FPGA: Recv ZPIEZORD 31860
17-03-17 23:13:30.738 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:30.738 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.699 V. Piezo Error = -8.9 V.
17-03-17 23:13:30.738 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.0 um, Read 10 ADC samples: Avg = 35903 (-170.1 uncal um), Error = 0.9 uncal um, Median = 35901 (-170.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35899 (-170.1 uncal um), Max = 35910 (-170.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:13:30.738 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35903, posNoise = 7, negNoise = 4
17-03-17 23:13:30.738 -07 000000610 INF: Z Motor: After move to -0.170964, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:13:30.738 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 23:13:30.738 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:13:30.738 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:13:30.738 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:13:30.738 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:13:30.738 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:13:30.738 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:13:30.738 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:13:30.738 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:13:30.738 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 3 ms.
17-03-17 23:13:30.738 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:13:30.738 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:13:30.738 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:13:30.748 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:13:30.748 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:13:30.748 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 23:13:30.748 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:13:30.758 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 23:13:30.758 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 23:13:30.758 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 23:13:30.758 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 23:13:30.758 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 470 470 226 226 37524 150\n [Camera]
17-03-17 23:13:30.958 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:13:31.428 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 662
17-03-17 23:13:31.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 662
17-03-17 23:13:31.428 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:13:31.438 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 662
17-03-17 23:13:31.438 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 662
17-03-17 23:13:31.438 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:13:31.438 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:13:31.438 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 23:13:31.438 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:13:31.438 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2602438304, 0x0, 391868352) start.
17-03-17 23:13:31.628 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37524 855
17-03-17 23:13:31.778 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1005
17-03-17 23:13:31.818 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2602438304, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 23:13:31.818 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 23:13:31.818 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:13:31.818 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 23:13:31.818 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 23:13:31.818 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:13:31.828 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:13:31.828 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 23:13:31.828 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:13:31.828 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 23:13:31.998 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1231
17-03-17 23:13:31.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1231
17-03-17 23:13:31.998 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:13:31.998 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1231
17-03-17 23:13:31.998 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1231
17-03-17 23:13:31.998 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:13:32.008 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-17 23:13:32.008 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:13:32.008 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:13:32.008 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-17 23:13:32.048 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:13:32.048 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 72. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1154, R2=1202, Total=2356. Warn if over 250 bubbles per interval.
17-03-17 23:13:32.188 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP 1423
17-03-17 23:13:32.188 -07 000000551 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:13:32.188 -07 000000610 INF: FPGA: 'CAMDBLSNAP 470 470 226 226 37524 150' command took 2 ms to send, 1428 ms to get response, and 1432 ms overall
17-03-17 23:13:32.198 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:13:32.198 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39453125, Z-Position -0.170971840536779. ------
17-03-17 23:13:32.198 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:13:32.198 -07 000000623 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17751 mm
17-03-17 23:13:32.198 -07 000000623 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:13:32.198 -07 000000593 INF: Z Motor: Entering MoveAbsStepped (DAC = 38777, sync = True, waitForSettling = False)
17-03-17 23:13:32.198 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:13:32.198 -07 000000593 INF: Z Motor: Moving to -0.177510 mm, started at -0.170972 mm, distance = -6.54 um
17-03-17 23:13:32.198 -07 000000409 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 23:13:32.208 -07 000000409 INF: Y Motor: Moving to 63.2326 mm, started at 62.3945 mm, delta = 0.8381 mm
17-03-17 23:13:32.208 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:13:32.208 -07 000000593 INF: FPGA: Xmit ZDACW 38777\n [Z Motor]
17-03-17 23:13:32.208 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 23:13:32.218 -07 000000593 INF: FPGA: 'ZDACW 38777' command took 1 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 23:13:32.218 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:13:32.228 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:13:32.228 -07 000000482 INF: FPGA: Recv YRDPOS 127784
17-03-17 23:13:32.238 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:13:32.238 -07 000000409 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:13:32.238 -07 000000409 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:13:32.238 -07 000000409 INF: Y Motor: Moving 1341 steps-18
17-03-17 23:13:32.238 -07 000000593 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:13:32.238 -07 000000448 INF: FPGA: Recv ZDACR 38777
17-03-17 23:13:32.248 -07 000000409 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:13:32.248 -07 000000593 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:13:32.248 -07 000000593 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-17 23:13:32.408 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 23:13:32.408 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 23:13:32.408 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:13:32.408 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 23:13:32.408 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 23:13:32.408 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:13:32.408 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:13:32.408 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:13:32.408 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 23:13:32.418 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 23:13:32.418 -07 000000415 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:13:32.418 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 211 ms overall
17-03-17 23:13:32.618 -07 000000551 INF: FPGA: Recv YMVTILE
17-03-17 23:13:32.618 -07 000000409 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 23:13:32.658 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:13:32.668 -07 000000486 INF: FPGA: Recv YRDPOS 129480
17-03-17 23:13:32.668 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 3 ms to get response, and 4 ms overall
17-03-17 23:13:32.668 -07 000000409 INF: Y Motor: Encoder = 129480 = motor step 101156.3 = 63.2227 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:13:32.668 -07 000000409 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 23:13:32.668 -07 000000409 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.838 mm, average velocity = 2.166 mm/sec
17-03-17 23:13:33.338 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 73, FrontChillerTemperature: 4.001704,
17-03-17 23:13:33.618 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:13:33.618 -07 000000415 INF: FPGA: Recv YRDPOS 129481
17-03-17 23:13:33.628 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:13:33.628 -07 000000409 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:13:33.648 -07 000000409 INF: Y Motor: After move to 63.232609, error = -0.009464, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:13:33.648 -07 000000409 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 23:13:33.648 -07 000000409 INF: Y Motor: Moved to 63.2231 after 1446 ms (table move)
17-03-17 23:13:33.658 -07 000000623 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177510 mm (DAC = 38777)
17-03-17 23:13:33.678 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:33.678 -07 000000475 INF: FPGA: Recv ZSGSRD 36923
17-03-17 23:13:33.688 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:13:33.688 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:33.688 -07 000000502 INF: FPGA: Recv ZSGSRD 36928
17-03-17 23:13:33.698 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:33.718 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:33.718 -07 000000486 INF: FPGA: Recv ZSGSRD 36922
17-03-17 23:13:33.728 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:13:33.728 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:33.728 -07 000000576 INF: FPGA: Recv ZSGSRD 36913
17-03-17 23:13:33.738 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:33.738 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:33.738 -07 000000475 INF: FPGA: Recv ZSGSRD 36921
17-03-17 23:13:33.748 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:33.748 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:33.748 -07 000000415 INF: FPGA: Recv ZSGSRD 36925
17-03-17 23:13:33.758 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:33.758 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:33.758 -07 000000429 INF: FPGA: Recv ZSGSRD 36922
17-03-17 23:13:33.768 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:33.768 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:33.768 -07 000000409 INF: FPGA: Recv ZSGSRD 36919
17-03-17 23:13:33.778 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:33.778 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:33.778 -07 000000448 INF: FPGA: Recv ZSGSRD 36923
17-03-17 23:13:33.788 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:33.788 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:33.788 -07 000000627 INF: FPGA: Recv ZSGSRD 36927
17-03-17 23:13:33.798 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:33.798 -07 000000623 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:13:33.798 -07 000000618 INF: FPGA: Recv ZPIEZORD 33218
17-03-17 23:13:33.808 -07 000000623 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:33.808 -07 000000623 INF: Z Motor: Piezo is near 51.0 V (nominally 0 to 100 V), expect near 59.2 V, since DAC is at 5.917 V. Piezo Error = -8.2 V.
17-03-17 23:13:33.808 -07 000000623 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.5 um, Read 10 ADC samples: Avg = 36922 (-176.6 uncal um), Error = 0.9 uncal um, Median = 36922 (-176.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36913 (-176.6 uncal um), Max = 36928 (-176.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 23:13:33.808 -07 000000623 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36922, posNoise = 6, negNoise = 9
17-03-17 23:13:33.808 -07 000000623 INF: Z Motor: After move to -0.177510, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:13:33.808 -07 000000623 INF: Z Motor: Settle wait time = 1453 ms, measure time = 150 ms (allowed 150 ms), total time = 1603 ms
17-03-17 23:13:33.808 -07 000000623 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1606 ms
17-03-17 23:13:33.808 -07 000000623 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:13:33.808 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:13:33.808 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:13:33.808 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:13:33.808 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:13:33.808 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:13:33.808 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:13:33.808 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:13:33.808 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:13:33.818 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:13:33.818 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:13:33.828 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 23:13:33.828 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 23:13:33.828 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:13:33.878 -07 000000551 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:13:34.078 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:13:34.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:13:34.078 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:13:34.078 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 619151688, 0x0, 559484976) start.
17-03-17 23:13:34.118 -07 000000561 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:13:34.118 -07 000000551 INF: FPGA: Recv CAMSNAP
17-03-17 23:13:34.118 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 284 ms to get response, and 286 ms overall
17-03-17 23:13:34.208 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 619151688, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 23:13:34.208 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:13:34.208 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:13:34.208 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 23:13:34.218 -07 000000623 INF: Autofocus start
17-03-17 23:13:34.218 -07 000000623 INF: MeasureProfile start
17-03-17 23:13:34.218 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:13:34.218 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:13:34.228 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:13:34.228 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:13:34.228 -07 000000623 INF: MeasureProfile done
17-03-17 23:13:34.228 -07 000000623 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 23:13:34.228 -07 000000623 INF: Autofocus finished
17-03-17 23:13:34.428 -07 000000627 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:13:34.428 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:13:34.428 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22314453125, Z-position -0.177518112709233. ----------
17-03-17 23:13:34.438 -07 000000610 INF: Cycle	73	Tile	5	Exposure Settings		A	470	G	226	T	226	C	470
17-03-17 23:13:34.438 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37257, sync = True, waitForSettling = True)
17-03-17 23:13:34.438 -07 000000610 INF: Z Motor: Moving to -0.170552 mm, started at -0.177518 mm, distance = 6.97 um
17-03-17 23:13:34.438 -07 000000610 INF: FPGA: Xmit ZDACW 37257\n [Z Motor]
17-03-17 23:13:34.438 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 23:13:34.448 -07 000000610 INF: FPGA: 'ZDACW 37257' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:13:34.448 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:13:34.448 -07 000000409 INF: FPGA: Recv ZDACR 37257
17-03-17 23:13:34.458 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:34.458 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:13:34.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:34.608 -07 000000627 INF: FPGA: Recv ZSGSRD 35844
17-03-17 23:13:34.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:13:34.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:34.618 -07 000000541 INF: FPGA: Recv ZSGSRD 35839
17-03-17 23:13:34.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:34.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:34.628 -07 000000547 INF: FPGA: Recv ZSGSRD 35840
17-03-17 23:13:34.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:34.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:34.638 -07 000000618 INF: FPGA: Recv ZSGSRD 35837
17-03-17 23:13:34.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:34.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:34.648 -07 000000462 INF: FPGA: Recv ZSGSRD 35843
17-03-17 23:13:34.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:34.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:34.658 -07 000000551 INF: FPGA: Recv ZSGSRD 35843
17-03-17 23:13:34.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:34.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:34.668 -07 000000576 INF: FPGA: Recv ZSGSRD 35835
17-03-17 23:13:34.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:34.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:34.678 -07 000000478 INF: FPGA: Recv ZSGSRD 35838
17-03-17 23:13:34.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:34.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:34.688 -07 000000576 INF: FPGA: Recv ZSGSRD 35838
17-03-17 23:13:34.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:34.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:34.698 -07 000000478 INF: FPGA: Recv ZSGSRD 35835
17-03-17 23:13:34.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:34.708 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:13:34.708 -07 000000541 INF: FPGA: Recv ZPIEZORD 31756
17-03-17 23:13:34.718 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:34.718 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.685 V. Piezo Error = -9.0 V.
17-03-17 23:13:34.718 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.6 um, Read 10 ADC samples: Avg = 35839 (-169.7 uncal um), Error = 0.9 uncal um, Median = 35838 (-169.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35835 (-169.7 uncal um), Max = 35844 (-169.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:13:34.718 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35839, posNoise = 5, negNoise = 4
17-03-17 23:13:34.728 -07 000000610 INF: Z Motor: After move to -0.170552, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:13:34.728 -07 000000610 INF: Z Motor: MoveAbsStepped took 288 ms)
17-03-17 23:13:34.728 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:13:34.728 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:13:34.738 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:13:34.738 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:13:34.738 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:13:34.738 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:13:34.738 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:13:34.738 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:13:34.738 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:13:34.738 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:13:34.738 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:13:34.738 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:13:34.738 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 23:13:34.738 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:13:34.738 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 23:13:34.738 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:13:34.758 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 23:13:34.758 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 23:13:34.758 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 23:13:34.758 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 23:13:34.758 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 470 470 226 226 37434 150\n [Camera]
17-03-17 23:13:34.958 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:13:35.428 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 662
17-03-17 23:13:35.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 662
17-03-17 23:13:35.428 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:13:35.438 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:13:35.438 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 23:13:35.438 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 662
17-03-17 23:13:35.438 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 662
17-03-17 23:13:35.438 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:13:35.438 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:13:35.438 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 23:13:35.628 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37434 855
17-03-17 23:13:35.778 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1005
17-03-17 23:13:35.818 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 23:13:35.818 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 23:13:35.818 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:13:35.818 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 23:13:35.818 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 23:13:35.818 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:13:35.828 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 23:13:35.828 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 23:13:35.828 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 23:13:35.828 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 23:13:35.998 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1231
17-03-17 23:13:35.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1231
17-03-17 23:13:35.998 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:13:36.008 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:13:36.008 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 23:13:36.008 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1231
17-03-17 23:13:36.008 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1231
17-03-17 23:13:36.008 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:13:36.008 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:13:36.008 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 23:13:36.188 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP 1424
17-03-17 23:13:36.188 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:13:36.188 -07 000000610 INF: FPGA: 'CAMDBLSNAP 470 470 226 226 37434 150' command took 2 ms to send, 1419 ms to get response, and 1431 ms overall
17-03-17 23:13:36.198 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:13:36.198 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22314453125, Z-Position -0.170560690959706. ------
17-03-17 23:13:36.308 -07 000000547 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17698 mm
17-03-17 23:13:36.308 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:13:36.308 -07 000000547 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:13:36.318 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:13:36.318 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 23:13:36.318 -07 000000448 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 23:13:36.318 -07 000000448 INF: Y Motor: Moving to 64.0626 mm, started at 63.2231 mm, delta = 0.8395 mm
17-03-17 23:13:36.318 -07 000000475 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:13:36.318 -07 000000429 INF: Z Motor: Entering MoveAbsStepped (DAC = 38662, sync = True, waitForSettling = False)
17-03-17 23:13:36.318 -07 000000429 INF: Z Motor: Moving to -0.176983 mm, started at -0.170561 mm, distance = -6.42 um
17-03-17 23:13:36.328 -07 000000429 INF: FPGA: Xmit ZDACW 38662\n [Z Motor]
17-03-17 23:13:36.328 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 23:13:36.338 -07 000000429 INF: FPGA: 'ZDACW 38662' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 23:13:36.338 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:13:36.338 -07 000000593 INF: FPGA: Recv YRDPOS 129481
17-03-17 23:13:36.348 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 23:13:36.348 -07 000000429 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:13:36.348 -07 000000448 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:13:36.348 -07 000000448 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:13:36.348 -07 000000448 INF: Y Motor: Moving 1343 steps-20
17-03-17 23:13:36.348 -07 000000409 INF: FPGA: Recv ZDACR 38662
17-03-17 23:13:36.358 -07 000000429 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:13:36.358 -07 000000429 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-17 23:13:36.358 -07 000000448 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:13:36.388 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 23:13:36.388 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 23:13:36.388 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:13:36.388 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 23:13:36.388 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 23:13:36.388 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:13:36.388 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:13:36.398 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:13:36.398 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 23:13:36.398 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 23:13:36.518 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:13:36.518 -07 000000475 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 202 ms overall
17-03-17 23:13:36.728 -07 000000415 INF: FPGA: Recv YMVTILE
17-03-17 23:13:36.728 -07 000000448 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 23:13:36.768 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:13:36.778 -07 000000576 INF: FPGA: Recv YRDPOS 131186
17-03-17 23:13:36.778 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 23:13:36.778 -07 000000448 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:13:36.778 -07 000000448 INF: Y Motor: Position error before settling (table move) = -14 encoder counts (-0.007 mm)
17-03-17 23:13:36.778 -07 000000448 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.839 mm, average velocity = 2.164 mm/sec
17-03-17 23:13:37.048 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:13:37.048 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 72. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1154, R2=1202, Total=2356. Warn if over 250 bubbles per interval.
17-03-17 23:13:37.728 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:13:37.728 -07 000000415 INF: FPGA: Recv YRDPOS 131186
17-03-17 23:13:37.738 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:13:37.738 -07 000000448 INF: Y Motor: Encoder = 131186 = motor step 102489.1 = 64.0557 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:13:37.758 -07 000000448 INF: Y Motor: After move to 64.062607, error = -0.006943, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:13:37.758 -07 000000448 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:13:37.758 -07 000000448 INF: Y Motor: Moved to 64.0557 after 1442 ms (table move)
17-03-17 23:13:37.758 -07 000000547 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176983 mm (DAC = 38662)
17-03-17 23:13:37.758 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:37.768 -07 000000409 INF: FPGA: Recv ZSGSRD 36837
17-03-17 23:13:37.768 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 5 ms to get response, and 6 ms overall
17-03-17 23:13:37.768 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:37.768 -07 000000502 INF: FPGA: Recv ZSGSRD 36846
17-03-17 23:13:37.778 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:13:37.778 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:37.778 -07 000000576 INF: FPGA: Recv ZSGSRD 36845
17-03-17 23:13:37.788 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:37.788 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:37.788 -07 000000382 INF: FPGA: Recv ZSGSRD 36838
17-03-17 23:13:37.798 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:37.798 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:37.798 -07 000000475 INF: FPGA: Recv ZSGSRD 36841
17-03-17 23:13:37.808 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:37.808 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:37.808 -07 000000623 INF: FPGA: Recv ZSGSRD 36841
17-03-17 23:13:37.818 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:37.818 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:37.818 -07 000000627 INF: FPGA: Recv ZSGSRD 36835
17-03-17 23:13:37.828 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:37.828 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:37.828 -07 000000576 INF: FPGA: Recv ZSGSRD 36839
17-03-17 23:13:37.838 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:37.838 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:37.838 -07 000000593 INF: FPGA: Recv ZSGSRD 36835
17-03-17 23:13:37.848 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:37.848 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:37.848 -07 000000448 INF: FPGA: Recv ZSGSRD 36841
17-03-17 23:13:37.858 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:37.858 -07 000000547 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:13:37.858 -07 000000541 INF: FPGA: Recv ZPIEZORD 33103
17-03-17 23:13:37.868 -07 000000547 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:37.868 -07 000000547 INF: Z Motor: Piezo is near 50.7 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.899 V. Piezo Error = -8.3 V.
17-03-17 23:13:37.868 -07 000000547 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.0 um, Read 10 ADC samples: Avg = 36840 (-176.1 uncal um), Error = 0.9 uncal um, Median = 36840 (-176.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36835 (-176.1 uncal um), Max = 36846 (-176.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:13:37.868 -07 000000547 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36840, posNoise = 6, negNoise = 5
17-03-17 23:13:37.868 -07 000000547 INF: Z Motor: After move to -0.176983, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:13:37.868 -07 000000547 INF: Z Motor: Settle wait time = 1444 ms, measure time = 102 ms (allowed 150 ms), total time = 1546 ms
17-03-17 23:13:37.868 -07 000000547 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 23:13:37.918 -07 000000547 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-17 23:13:37.918 -07 000000547 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:13:37.918 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:13:37.918 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:13:37.918 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:13:37.918 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:13:37.918 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:13:37.918 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:13:37.918 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:13:37.918 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:13:37.928 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:13:37.928 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:13:37.938 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 23:13:37.938 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 23:13:37.938 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:13:37.988 -07 000000593 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:13:38.188 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:13:38.188 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:13:38.188 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:13:38.188 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 23:13:38.228 -07 000000551 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:13:38.228 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-17 23:13:38.228 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 23:13:38.298 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 23:13:38.298 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:13:38.308 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:13:38.308 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 23:13:38.328 -07 000000475 INF: Autofocus start
17-03-17 23:13:38.328 -07 000000475 INF: MeasureProfile start
17-03-17 23:13:38.328 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:13:38.328 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:13:38.338 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:13:38.338 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:13:38.338 -07 000000475 INF: MeasureProfile done
17-03-17 23:13:38.338 -07 000000475 INF: X=32  Z correction [um]=0.09220707
17-03-17 23:13:38.338 -07 000000475 INF: Autofocus finished
17-03-17 23:13:38.538 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:13:38.538 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-17 23:13:38.538 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.0556640625, Z-position -0.176991327313609. ----------
17-03-17 23:13:38.538 -07 000000610 INF: Cycle	73	Tile	6	Exposure Settings		A	470	G	226	T	226	C	470
17-03-17 23:13:38.548 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37195, sync = True, waitForSettling = True)
17-03-17 23:13:38.548 -07 000000610 INF: Z Motor: Moving to -0.170268 mm, started at -0.176991 mm, distance = 6.72 um
17-03-17 23:13:38.548 -07 000000610 INF: FPGA: Xmit ZDACW 37195\n [Z Motor]
17-03-17 23:13:38.548 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 23:13:38.558 -07 000000610 INF: FPGA: 'ZDACW 37195' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:13:38.558 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:13:38.558 -07 000000576 INF: FPGA: Recv ZDACR 37195
17-03-17 23:13:38.568 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:38.568 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:13:38.708 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 73, FrontChillerTemperature: 3.973092,
17-03-17 23:13:38.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:38.728 -07 000000415 INF: FPGA: Recv ZSGSRD 35797
17-03-17 23:13:38.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:13:38.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:38.748 -07 000000551 INF: FPGA: Recv ZSGSRD 35788
17-03-17 23:13:38.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:13:38.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:38.768 -07 000000382 INF: FPGA: Recv ZSGSRD 35796
17-03-17 23:13:38.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:13:38.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:38.778 -07 000000593 INF: FPGA: Recv ZSGSRD 35794
17-03-17 23:13:38.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:38.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:38.798 -07 000000627 INF: FPGA: Recv ZSGSRD 35799
17-03-17 23:13:38.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:13:38.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:38.808 -07 000000551 INF: FPGA: Recv ZSGSRD 35796
17-03-17 23:13:38.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:38.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:38.818 -07 000000502 INF: FPGA: Recv ZSGSRD 35795
17-03-17 23:13:38.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:38.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:38.828 -07 000000576 INF: FPGA: Recv ZSGSRD 35791
17-03-17 23:13:38.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:38.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:38.838 -07 000000541 INF: FPGA: Recv ZSGSRD 35799
17-03-17 23:13:38.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:38.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:38.848 -07 000000482 INF: FPGA: Recv ZSGSRD 35795
17-03-17 23:13:38.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:38.858 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:13:38.858 -07 000000551 INF: FPGA: Recv ZPIEZORD 31723
17-03-17 23:13:38.868 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:38.868 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.676 V. Piezo Error = -9.0 V.
17-03-17 23:13:38.868 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.3 um, Read 10 ADC samples: Avg = 35795 (-169.4 uncal um), Error = 0.9 uncal um, Median = 35796 (-169.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35788 (-169.4 uncal um), Max = 35799 (-169.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 23:13:38.868 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35795, posNoise = 4, negNoise = 7
17-03-17 23:13:38.868 -07 000000610 INF: Z Motor: After move to -0.170268, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:13:38.868 -07 000000610 INF: Z Motor: MoveAbsStepped took 320 ms)
17-03-17 23:13:38.868 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:13:38.868 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:13:38.868 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:13:38.868 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:13:38.868 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:13:38.868 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:13:38.868 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:13:38.868 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:13:38.868 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:13:38.868 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:13:38.868 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 23:13:38.868 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:13:38.878 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:13:38.878 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:13:38.878 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:13:38.878 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:13:38.888 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 23:13:38.888 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 23:13:38.888 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 23:13:38.888 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 23:13:38.888 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 470 470 226 226 37372 150\n [Camera]
17-03-17 23:13:39.088 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:13:39.558 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 662
17-03-17 23:13:39.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 662
17-03-17 23:13:39.558 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:13:39.558 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 662
17-03-17 23:13:39.558 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 662
17-03-17 23:13:39.558 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:13:39.558 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:13:39.558 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 23:13:39.568 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:13:39.568 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 23:13:39.748 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37372 855
17-03-17 23:13:39.898 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1005
17-03-17 23:13:39.938 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 23:13:39.938 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 23:13:39.938 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:13:39.938 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 23:13:39.938 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 23:13:39.938 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:13:39.948 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:13:39.948 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:13:39.948 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 23:13:39.948 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 23:13:40.128 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1231
17-03-17 23:13:40.128 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1231
17-03-17 23:13:40.128 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:13:40.128 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1231
17-03-17 23:13:40.128 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1231
17-03-17 23:13:40.128 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:13:40.248 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:13:40.248 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-17 23:13:40.248 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:13:40.248 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-17 23:13:40.318 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP 1424
17-03-17 23:13:40.318 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:13:40.318 -07 000000610 INF: FPGA: 'CAMDBLSNAP 470 470 226 226 37372 150' command took 2 ms to send, 1424 ms to get response, and 1431 ms overall
17-03-17 23:13:40.318 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:13:40.318 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.0556640625, Z-Position -0.170278025625468. ------
17-03-17 23:13:40.318 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:13:40.318 -07 000000415 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17646 mm
17-03-17 23:13:40.328 -07 000000415 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:13:40.328 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:13:40.328 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 38547, sync = True, waitForSettling = False)
17-03-17 23:13:40.328 -07 000000618 INF: Z Motor: Moving to -0.176457 mm, started at -0.170278 mm, distance = -6.18 um
17-03-17 23:13:40.328 -07 000000618 INF: FPGA: Xmit ZDACW 38547\n [Z Motor]
17-03-17 23:13:40.328 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 23:13:40.328 -07 000000462 INF: Y Motor: Moving to 64.8926 mm, started at 64.0557 mm, delta = 0.8369 mm
17-03-17 23:13:40.328 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 23:13:40.328 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 23:13:40.338 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:13:40.338 -07 000000618 INF: FPGA: 'ZDACW 38547' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:13:40.338 -07 000000382 INF: FPGA: Recv YRDPOS 131187
17-03-17 23:13:40.348 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 23:13:40.348 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:13:40.348 -07 000000462 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:13:40.348 -07 000000462 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:13:40.348 -07 000000462 INF: Y Motor: Moving 1338 steps-14
17-03-17 23:13:40.358 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:13:40.358 -07 000000475 INF: FPGA: Recv ZDACR 38547
17-03-17 23:13:40.368 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:13:40.368 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:13:40.368 -07 000000618 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-17 23:13:40.548 -07 000000448 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:13:40.548 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 218 ms overall
17-03-17 23:13:40.648 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 23:13:40.648 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 23:13:40.648 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:13:40.648 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 23:13:40.648 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 23:13:40.648 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:13:40.648 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:13:40.648 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:13:40.648 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 524 ms.
17-03-17 23:13:40.658 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 528 ms.
17-03-17 23:13:40.748 -07 000000486 INF: FPGA: Recv YMVTILE
17-03-17 23:13:40.748 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 395 ms overall
17-03-17 23:13:40.788 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:13:40.788 -07 000000475 INF: FPGA: Recv YRDPOS 132870
17-03-17 23:13:40.798 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:40.798 -07 000000462 INF: Y Motor: Encoder = 132870 = motor step 103804.7 = 64.8779 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:13:40.798 -07 000000462 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 23:13:40.798 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.837 mm, average velocity = 2.119 mm/sec
17-03-17 23:13:41.748 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:13:41.748 -07 000000547 INF: FPGA: Recv YRDPOS 132870
17-03-17 23:13:41.758 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:41.758 -07 000000462 INF: Y Motor: Encoder = 132870 = motor step 103804.7 = 64.8779 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:13:41.778 -07 000000462 INF: Y Motor: After move to 64.892609, error = -0.014679, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:13:41.778 -07 000000462 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:13:41.778 -07 000000462 INF: Y Motor: Moved to 64.8779 after 1451 ms (table move)
17-03-17 23:13:41.778 -07 000000415 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176457 mm (DAC = 38547)
17-03-17 23:13:41.778 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:41.788 -07 000000475 INF: FPGA: Recv ZSGSRD 36758
17-03-17 23:13:41.788 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 23:13:41.788 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:41.788 -07 000000482 INF: FPGA: Recv ZSGSRD 36758
17-03-17 23:13:41.798 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:13:41.798 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:41.798 -07 000000502 INF: FPGA: Recv ZSGSRD 36766
17-03-17 23:13:41.808 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:13:41.808 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:41.808 -07 000000382 INF: FPGA: Recv ZSGSRD 36753
17-03-17 23:13:41.818 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:41.818 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:41.818 -07 000000475 INF: FPGA: Recv ZSGSRD 36748
17-03-17 23:13:41.828 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:41.828 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:41.828 -07 000000429 INF: FPGA: Recv ZSGSRD 36756
17-03-17 23:13:41.838 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:41.838 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:41.838 -07 000000478 INF: FPGA: Recv ZSGSRD 36753
17-03-17 23:13:41.848 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:41.848 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:41.848 -07 000000627 INF: FPGA: Recv ZSGSRD 36759
17-03-17 23:13:41.858 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:41.858 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:41.858 -07 000000382 INF: FPGA: Recv ZSGSRD 36764
17-03-17 23:13:41.868 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:41.868 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:41.868 -07 000000593 INF: FPGA: Recv ZSGSRD 36754
17-03-17 23:13:41.878 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:41.878 -07 000000415 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:13:41.878 -07 000000561 INF: FPGA: Recv ZPIEZORD 33022
17-03-17 23:13:41.888 -07 000000415 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:41.888 -07 000000415 INF: Z Motor: Piezo is near 50.5 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.882 V. Piezo Error = -8.3 V.
17-03-17 23:13:41.888 -07 000000415 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.5 um, Read 10 ADC samples: Avg = 36757 (-175.6 uncal um), Error = 0.9 uncal um, Median = 36757 (-175.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36748 (-175.5 uncal um), Max = 36766 (-175.6 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 23:13:41.888 -07 000000415 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36757, posNoise = 9, negNoise = 9
17-03-17 23:13:41.888 -07 000000415 INF: Z Motor: After move to -0.176457, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:13:41.888 -07 000000415 INF: Z Motor: Settle wait time = 1455 ms, measure time = 102 ms (allowed 150 ms), total time = 1557 ms
17-03-17 23:13:41.888 -07 000000415 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 23:13:41.938 -07 000000415 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1610 ms
17-03-17 23:13:41.938 -07 000000415 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:13:41.938 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:13:41.938 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:13:41.938 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:13:41.938 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:13:41.938 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:13:41.938 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:13:41.938 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:13:41.938 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:13:41.948 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 23:13:41.948 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:13:41.958 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 23:13:41.958 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 23:13:41.958 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:13:42.008 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:13:42.048 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:13:42.048 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 72. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1154, R2=1202, Total=2356. Warn if over 250 bubbles per interval.
17-03-17 23:13:42.208 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:13:42.208 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:13:42.208 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:13:42.208 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 606469960, 0x0, 559484976) start.
17-03-17 23:13:42.248 -07 000000627 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:13:42.248 -07 000000623 INF: FPGA: Recv CAMSNAP
17-03-17 23:13:42.248 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 23:13:42.328 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 606469960, 0x0, 559484976) end. Duration was 124 ms.
17-03-17 23:13:42.328 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:13:42.328 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 23:13:42.328 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-17 23:13:42.348 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:13:42.348 -07 000000482 INF: Autofocus start
17-03-17 23:13:42.348 -07 000000482 INF: MeasureProfile start
17-03-17 23:13:42.348 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:13:42.358 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:13:42.358 -07 000000448 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:13:42.368 -07 000000482 INF: MeasureProfile done
17-03-17 23:13:42.368 -07 000000482 INF: X=80  Z correction [um]=0.337546
17-03-17 23:13:42.368 -07 000000482 INF: Autofocus finished
17-03-17 23:13:42.558 -07 000000409 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:13:42.558 -07 000000448 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:13:42.558 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.8779296875, Z-position -0.176458117705842. ----------
17-03-17 23:13:42.558 -07 000000610 INF: Cycle	73	Tile	7	Exposure Settings		A	470	G	226	T	226	C	470
17-03-17 23:13:42.568 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37133, sync = True, waitForSettling = True)
17-03-17 23:13:42.568 -07 000000610 INF: Z Motor: Moving to -0.169984 mm, started at -0.176458 mm, distance = 6.47 um
17-03-17 23:13:42.568 -07 000000610 INF: FPGA: Xmit ZDACW 37133\n [Z Motor]
17-03-17 23:13:42.568 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 23:13:42.578 -07 000000610 INF: FPGA: 'ZDACW 37133' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:13:42.578 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:13:42.578 -07 000000462 INF: FPGA: Recv ZDACR 37133
17-03-17 23:13:42.588 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:42.588 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:13:42.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:42.738 -07 000000429 INF: FPGA: Recv ZSGSRD 35745
17-03-17 23:13:42.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:42.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:42.748 -07 000000541 INF: FPGA: Recv ZSGSRD 35751
17-03-17 23:13:42.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:42.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:42.758 -07 000000448 INF: FPGA: Recv ZSGSRD 35752
17-03-17 23:13:42.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:42.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:42.768 -07 000000478 INF: FPGA: Recv ZSGSRD 35744
17-03-17 23:13:42.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:42.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:42.778 -07 000000551 INF: FPGA: Recv ZSGSRD 35750
17-03-17 23:13:42.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:42.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:42.788 -07 000000623 INF: FPGA: Recv ZSGSRD 35754
17-03-17 23:13:42.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:42.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:42.798 -07 000000627 INF: FPGA: Recv ZSGSRD 35755
17-03-17 23:13:42.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:42.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:42.808 -07 000000448 INF: FPGA: Recv ZSGSRD 35749
17-03-17 23:13:42.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:42.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:42.818 -07 000000618 INF: FPGA: Recv ZSGSRD 35752
17-03-17 23:13:42.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:42.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:42.828 -07 000000475 INF: FPGA: Recv ZSGSRD 35752
17-03-17 23:13:42.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:42.838 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:13:42.838 -07 000000429 INF: FPGA: Recv ZPIEZORD 31651
17-03-17 23:13:42.848 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:42.848 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.666 V. Piezo Error = -9.0 V.
17-03-17 23:13:42.848 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.0 um, Read 10 ADC samples: Avg = 35750 (-169.1 uncal um), Error = 0.9 uncal um, Median = 35752 (-169.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35744 (-169.1 uncal um), Max = 35755 (-169.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:13:42.848 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35750, posNoise = 5, negNoise = 6
17-03-17 23:13:42.848 -07 000000610 INF: Z Motor: After move to -0.169984, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:13:42.848 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 23:13:42.848 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:13:42.848 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:13:42.848 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:13:42.848 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:13:42.848 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:13:42.848 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:13:42.848 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:13:42.848 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:13:42.848 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:13:42.848 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:13:42.858 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:13:42.858 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:13:42.858 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 23:13:42.858 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:13:42.858 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 23:13:42.858 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:13:42.868 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 23:13:42.868 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 23:13:42.868 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 23:13:42.868 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:13:42.868 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 470 470 226 226 37310 150\n [Camera]
17-03-17 23:13:43.068 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning red on 194
17-03-17 23:13:43.538 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 664
17-03-17 23:13:43.538 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 664
17-03-17 23:13:43.538 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:13:43.548 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 664
17-03-17 23:13:43.548 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 664
17-03-17 23:13:43.548 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:13:43.548 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:13:43.548 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 23:13:43.548 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:13:43.548 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 23:13:43.728 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37310 855
17-03-17 23:13:43.878 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1005
17-03-17 23:13:43.918 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 374 ms.
17-03-17 23:13:43.918 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-17 23:13:43.918 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:13:43.918 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 23:13:43.918 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 23:13:43.918 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:13:43.928 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:13:43.928 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 23:13:43.928 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:13:43.938 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 23:13:44.108 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1231
17-03-17 23:13:44.108 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1231
17-03-17 23:13:44.108 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:13:44.108 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1231
17-03-17 23:13:44.108 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1231
17-03-17 23:13:44.108 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:13:44.108 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:13:44.108 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 23:13:44.118 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 73, FrontChillerTemperature: 3.986717,
17-03-17 23:13:44.118 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:13:44.118 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2602438304, 0x0, 391868352) start.
17-03-17 23:13:44.298 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP 1424
17-03-17 23:13:44.298 -07 000000409 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:13:44.298 -07 000000610 INF: FPGA: 'CAMDBLSNAP 470 470 226 226 37310 150' command took 2 ms to send, 1426 ms to get response, and 1430 ms overall
17-03-17 23:13:44.298 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:13:44.298 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.8779296875, Z-Position -0.169988936079089. ------
17-03-17 23:13:44.308 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17655 mm
17-03-17 23:13:44.308 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:13:44.308 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:13:44.308 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 23:13:44.308 -07 000000382 INF: Y Motor: Moving to 65.7226 mm, started at 64.8779 mm, delta = 0.8447 mm
17-03-17 23:13:44.308 -07 000000448 INF: Z Motor: Entering MoveAbsStepped (DAC = 38567, sync = True, waitForSettling = False)
17-03-17 23:13:44.308 -07 000000448 INF: Z Motor: Moving to -0.176548 mm, started at -0.169989 mm, distance = -6.56 um
17-03-17 23:13:44.308 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:13:44.318 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 2 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:13:44.318 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:13:44.318 -07 000000475 INF: FPGA: Recv YRDPOS 132870
17-03-17 23:13:44.328 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 23:13:44.328 -07 000000382 INF: Y Motor: Encoder = 132870 = motor step 103804.7 = 64.8779 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:13:44.328 -07 000000382 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:13:44.328 -07 000000382 INF: Y Motor: Moving 1351 steps-30
17-03-17 23:13:44.328 -07 000000448 INF: FPGA: Xmit ZDACW 38567\n [Z Motor]
17-03-17 23:13:44.328 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 23:13:44.338 -07 000000486 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:13:44.338 -07 000000448 INF: FPGA: 'ZDACW 38567' command took 1 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 23:13:44.348 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:13:44.358 -07 000000448 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:13:44.358 -07 000000409 INF: FPGA: Recv ZDACR 38567
17-03-17 23:13:44.368 -07 000000448 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:13:44.368 -07 000000448 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 23:13:44.498 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 23:13:44.498 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 23:13:44.498 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:13:44.498 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2602438304, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 23:13:44.498 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 23:13:44.498 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:13:44.498 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:13:44.508 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:13:44.508 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 23:13:44.508 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 23:13:44.538 -07 000000429 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:13:44.538 -07 000000486 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 225 ms overall
17-03-17 23:13:44.718 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-17 23:13:44.718 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 23:13:44.758 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:13:44.768 -07 000000415 INF: FPGA: Recv YRDPOS 134580
17-03-17 23:13:44.768 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 23:13:44.768 -07 000000382 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:13:44.768 -07 000000382 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 23:13:44.768 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.128 mm/sec
17-03-17 23:13:45.718 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:13:45.718 -07 000000482 INF: FPGA: Recv YRDPOS 134580
17-03-17 23:13:45.728 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:13:45.728 -07 000000382 INF: Y Motor: Encoder = 134580 = motor step 105140.6 = 65.7129 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:13:45.758 -07 000000382 INF: Y Motor: After move to 65.722610, error = -0.009720, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:13:45.758 -07 000000382 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:13:45.758 -07 000000382 INF: Y Motor: Moved to 65.7129 after 1444 ms (table move)
17-03-17 23:13:45.758 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176548 mm (DAC = 38567)
17-03-17 23:13:45.758 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:45.758 -07 000000627 INF: FPGA: Recv ZSGSRD 36782
17-03-17 23:13:45.768 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:13:45.768 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:45.768 -07 000000415 INF: FPGA: Recv ZSGSRD 36772
17-03-17 23:13:45.778 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:45.778 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:45.778 -07 000000462 INF: FPGA: Recv ZSGSRD 36774
17-03-17 23:13:45.788 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:45.788 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:45.788 -07 000000429 INF: FPGA: Recv ZSGSRD 36772
17-03-17 23:13:45.798 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:45.798 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:45.798 -07 000000561 INF: FPGA: Recv ZSGSRD 36774
17-03-17 23:13:45.808 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:45.808 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:45.808 -07 000000502 INF: FPGA: Recv ZSGSRD 36765
17-03-17 23:13:45.818 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:45.818 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:45.818 -07 000000482 INF: FPGA: Recv ZSGSRD 36768
17-03-17 23:13:45.828 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:45.828 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:45.828 -07 000000478 INF: FPGA: Recv ZSGSRD 36772
17-03-17 23:13:45.838 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:45.838 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:45.838 -07 000000627 INF: FPGA: Recv ZSGSRD 36773
17-03-17 23:13:45.848 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:45.848 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:45.848 -07 000000561 INF: FPGA: Recv ZSGSRD 36779
17-03-17 23:13:45.858 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:45.858 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:13:45.858 -07 000000593 INF: FPGA: Recv ZPIEZORD 33028
17-03-17 23:13:45.868 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:45.868 -07 000000576 INF: Z Motor: Piezo is near 50.6 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.885 V. Piezo Error = -8.3 V.
17-03-17 23:13:45.868 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.5 um, Read 10 ADC samples: Avg = 36773 (-175.7 uncal um), Error = 0.9 uncal um, Median = 36772 (-175.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36765 (-175.6 uncal um), Max = 36782 (-175.7 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 23:13:45.868 -07 000000576 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36773, posNoise = 9, negNoise = 8
17-03-17 23:13:45.868 -07 000000576 INF: Z Motor: After move to -0.176548, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:13:45.868 -07 000000576 INF: Z Motor: Settle wait time = 1447 ms, measure time = 106 ms (allowed 150 ms), total time = 1553 ms
17-03-17 23:13:45.868 -07 000000576 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 23:13:45.918 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-17 23:13:45.918 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:13:45.918 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:13:45.918 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:13:45.918 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:13:45.918 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:13:45.918 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:13:45.918 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:13:45.918 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 23:13:45.918 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:13:45.928 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:13:45.928 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:13:45.938 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 23:13:45.938 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 23:13:45.938 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:13:45.988 -07 000000478 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:13:46.188 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:13:46.188 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:13:46.188 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:13:46.188 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 23:13:46.218 -07 000000482 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:13:46.228 -07 000000551 INF: FPGA: Recv CAMSNAP
17-03-17 23:13:46.228 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 23:13:46.298 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 23:13:46.298 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:13:46.308 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 23:13:46.308 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 23:13:46.328 -07 000000593 INF: Autofocus start
17-03-17 23:13:46.328 -07 000000593 INF: MeasureProfile start
17-03-17 23:13:46.328 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:13:46.328 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:13:46.338 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:13:46.338 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:13:46.338 -07 000000593 INF: MeasureProfile done
17-03-17 23:13:46.338 -07 000000593 INF: X=16  Z correction [um]=0.01042744
17-03-17 23:13:46.338 -07 000000593 INF: Autofocus finished
17-03-17 23:13:46.538 -07 000000623 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:13:46.538 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 199 ms to get response, and 202 ms overall
17-03-17 23:13:46.548 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.712890625, Z-position -0.176560905100111. ----------
17-03-17 23:13:46.548 -07 000000610 INF: Cycle	73	Tile	8	Exposure Settings		A	470	G	226	T	226	C	470
17-03-17 23:13:46.548 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37082, sync = True, waitForSettling = True)
17-03-17 23:13:46.548 -07 000000610 INF: Z Motor: Moving to -0.169751 mm, started at -0.176561 mm, distance = 6.81 um
17-03-17 23:13:46.548 -07 000000610 INF: FPGA: Xmit ZDACW 37082\n [Z Motor]
17-03-17 23:13:46.558 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 23:13:46.558 -07 000000610 INF: FPGA: 'ZDACW 37082' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 23:13:46.558 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:13:46.558 -07 000000478 INF: FPGA: Recv ZDACR 37082
17-03-17 23:13:46.568 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:46.568 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:13:46.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:46.718 -07 000000576 INF: FPGA: Recv ZSGSRD 35721
17-03-17 23:13:46.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:13:46.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:46.728 -07 000000551 INF: FPGA: Recv ZSGSRD 35717
17-03-17 23:13:46.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:46.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:46.738 -07 000000623 INF: FPGA: Recv ZSGSRD 35709
17-03-17 23:13:46.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:46.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:46.748 -07 000000409 INF: FPGA: Recv ZSGSRD 35716
17-03-17 23:13:46.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:46.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:46.758 -07 000000415 INF: FPGA: Recv ZSGSRD 35713
17-03-17 23:13:46.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:46.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:46.768 -07 000000576 INF: FPGA: Recv ZSGSRD 35716
17-03-17 23:13:46.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:46.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:46.778 -07 000000448 INF: FPGA: Recv ZSGSRD 35720
17-03-17 23:13:46.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:46.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:46.788 -07 000000541 INF: FPGA: Recv ZSGSRD 35710
17-03-17 23:13:46.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:46.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:46.798 -07 000000561 INF: FPGA: Recv ZSGSRD 35715
17-03-17 23:13:46.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:46.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:46.808 -07 000000478 INF: FPGA: Recv ZSGSRD 35717
17-03-17 23:13:46.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:46.818 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:13:46.818 -07 000000547 INF: FPGA: Recv ZPIEZORD 31607
17-03-17 23:13:46.828 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:46.828 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 56.6 V, since DAC is at 5.658 V. Piezo Error = -9.1 V.
17-03-17 23:13:46.828 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.8 um, Read 10 ADC samples: Avg = 35715 (-168.9 uncal um), Error = 0.9 uncal um, Median = 35716 (-168.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35709 (-168.9 uncal um), Max = 35721 (-168.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:13:46.828 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35715, posNoise = 6, negNoise = 6
17-03-17 23:13:46.828 -07 000000610 INF: Z Motor: After move to -0.169751, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:13:46.828 -07 000000610 INF: Z Motor: MoveAbsStepped took 273 ms)
17-03-17 23:13:46.828 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:13:46.828 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:13:46.828 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:13:46.828 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:13:46.828 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:13:46.828 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:13:46.828 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:13:46.828 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:13:46.828 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 23:13:46.828 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:13:46.828 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:13:46.828 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:13:46.838 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:13:46.838 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:13:46.838 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:13:46.838 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:13:46.848 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 23:13:46.848 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 23:13:46.848 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 23:13:46.848 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:13:46.848 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 470 470 226 226 37259 150\n [Camera]
17-03-17 23:13:47.048 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:13:47.048 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:13:47.048 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 72. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1154, R2=1202, Total=2356. Warn if over 250 bubbles per interval.
17-03-17 23:13:47.518 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 662
17-03-17 23:13:47.518 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 662
17-03-17 23:13:47.518 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:13:47.518 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:13:47.518 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-17 23:13:47.518 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 662
17-03-17 23:13:47.518 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 662
17-03-17 23:13:47.518 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:13:47.518 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:13:47.518 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-17 23:13:47.708 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37259 855
17-03-17 23:13:47.858 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1005
17-03-17 23:13:47.898 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 23:13:47.898 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 23:13:47.898 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:13:47.898 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 23:13:47.898 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 23:13:47.898 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:13:47.898 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:13:47.908 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:13:47.908 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 23:13:47.908 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 23:13:48.088 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1231
17-03-17 23:13:48.088 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1231
17-03-17 23:13:48.088 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:13:48.198 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1231
17-03-17 23:13:48.198 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1231
17-03-17 23:13:48.198 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:13:48.198 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:13:48.198 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 23:13:48.198 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:13:48.198 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 23:13:48.278 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1424
17-03-17 23:13:48.278 -07 000000486 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:13:48.278 -07 000000610 INF: FPGA: 'CAMDBLSNAP 470 470 226 226 37259 150' command took 2 ms to send, 1424 ms to get response, and 1431 ms overall
17-03-17 23:13:48.278 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:13:48.278 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.712890625, Z-Position -0.169764088654128. ------
17-03-17 23:13:48.278 -07 000000409 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:13:48.278 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17619 mm
17-03-17 23:13:48.278 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:13:48.288 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:13:48.288 -07 000000409 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 23:13:48.288 -07 000000547 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 23:13:48.288 -07 000000547 INF: Y Motor: Moving to 66.5526 mm, started at 65.7129 mm, delta = 0.8397 mm
17-03-17 23:13:48.288 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:13:48.288 -07 000000482 INF: Z Motor: Entering MoveAbsStepped (DAC = 38488, sync = True, waitForSettling = False)
17-03-17 23:13:48.288 -07 000000482 INF: Z Motor: Moving to -0.176187 mm, started at -0.169764 mm, distance = -6.42 um
17-03-17 23:13:48.288 -07 000000561 INF: FPGA: Recv YRDPOS 134581
17-03-17 23:13:48.298 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:13:48.298 -07 000000547 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:13:48.298 -07 000000482 INF: FPGA: Xmit ZDACW 38488\n [Z Motor]
17-03-17 23:13:48.298 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 23:13:48.298 -07 000000547 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:13:48.298 -07 000000547 INF: Y Motor: Moving 1343 steps-20
17-03-17 23:13:48.308 -07 000000409 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:13:48.308 -07 000000482 INF: FPGA: 'ZDACW 38488' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 23:13:48.318 -07 000000547 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:13:48.328 -07 000000482 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:13:48.328 -07 000000478 INF: FPGA: Recv ZDACR 38488
17-03-17 23:13:48.338 -07 000000482 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:13:48.338 -07 000000482 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-17 23:13:48.508 -07 000000475 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:13:48.508 -07 000000409 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 219 ms overall
17-03-17 23:13:48.598 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 23:13:48.598 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 23:13:48.598 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:13:48.598 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:13:48.598 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 23:13:48.598 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 23:13:48.598 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:13:48.608 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:13:48.608 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 518 ms.
17-03-17 23:13:48.608 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 23:13:48.688 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-17 23:13:48.688 -07 000000547 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 390 ms overall
17-03-17 23:13:48.738 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:13:48.738 -07 000000382 INF: FPGA: Recv YRDPOS 136269
17-03-17 23:13:48.748 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:48.748 -07 000000547 INF: Y Motor: Encoder = 136269 = motor step 106460.2 = 66.5376 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:13:48.748 -07 000000547 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 23:13:48.748 -07 000000547 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.840 mm, average velocity = 2.153 mm/sec
17-03-17 23:13:49.488 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 73, FrontChillerTemperature: 4.012614,
17-03-17 23:13:49.698 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:13:49.698 -07 000000618 INF: FPGA: Recv YRDPOS 136270
17-03-17 23:13:49.708 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:49.708 -07 000000547 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:13:49.728 -07 000000547 INF: Y Motor: After move to 66.552605, error = -0.014519, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:13:49.728 -07 000000547 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 23:13:49.728 -07 000000547 INF: Y Motor: Moved to 66.5381 after 1443 ms (table move)
17-03-17 23:13:49.738 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176187 mm (DAC = 38488)
17-03-17 23:13:49.738 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:49.738 -07 000000462 INF: FPGA: Recv ZSGSRD 36719
17-03-17 23:13:49.748 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:49.748 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:49.748 -07 000000593 INF: FPGA: Recv ZSGSRD 36718
17-03-17 23:13:49.758 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:49.758 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:49.758 -07 000000478 INF: FPGA: Recv ZSGSRD 36717
17-03-17 23:13:49.768 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:49.768 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:49.768 -07 000000618 INF: FPGA: Recv ZSGSRD 36716
17-03-17 23:13:49.778 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:49.778 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:49.778 -07 000000415 INF: FPGA: Recv ZSGSRD 36710
17-03-17 23:13:49.788 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:49.798 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:49.798 -07 000000618 INF: FPGA: Recv ZSGSRD 36714
17-03-17 23:13:49.808 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:13:49.808 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:49.808 -07 000000415 INF: FPGA: Recv ZSGSRD 36719
17-03-17 23:13:49.818 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:49.838 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:49.838 -07 000000623 INF: FPGA: Recv ZSGSRD 36719
17-03-17 23:13:49.848 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:13:49.848 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:49.848 -07 000000618 INF: FPGA: Recv ZSGSRD 36718
17-03-17 23:13:49.858 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:49.878 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:49.878 -07 000000478 INF: FPGA: Recv ZSGSRD 36709
17-03-17 23:13:49.888 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:13:49.888 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:13:49.888 -07 000000501 INF: FPGA: Recv ZPIEZORD 32919
17-03-17 23:13:49.898 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:49.898 -07 000000576 INF: Z Motor: Piezo is near 50.3 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.873 V. Piezo Error = -8.4 V.
17-03-17 23:13:49.898 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.2 um, Read 10 ADC samples: Avg = 36716 (-175.3 uncal um), Error = 0.9 uncal um, Median = 36718 (-175.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36709 (-175.3 uncal um), Max = 36719 (-175.3 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 23:13:49.898 -07 000000576 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36716, posNoise = 3, negNoise = 7
17-03-17 23:13:49.898 -07 000000576 INF: Z Motor: After move to -0.176187, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:13:49.898 -07 000000576 INF: Z Motor: Settle wait time = 1445 ms, measure time = 161 ms (allowed 150 ms), total time = 1606 ms
17-03-17 23:13:49.898 -07 000000576 INF: Z Motor: Warning: Actual position measuring time = 161 ms, longer than max expected time of 150 ms
17-03-17 23:13:49.898 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1611 ms
17-03-17 23:13:49.898 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:13:49.898 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:13:49.898 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:13:49.898 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:13:49.898 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:13:49.898 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:13:49.898 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:13:49.898 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:13:49.898 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:13:49.908 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 23:13:49.908 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:13:49.918 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 23:13:49.918 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 23:13:49.918 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:13:49.968 -07 000000482 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:13:50.168 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:13:50.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:13:50.168 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:13:50.168 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2451345512, 0x0, 559484976) start.
17-03-17 23:13:50.208 -07 000000627 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:13:50.208 -07 000000475 INF: FPGA: Recv CAMSNAP
17-03-17 23:13:50.208 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 285 ms overall
17-03-17 23:13:50.298 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2451345512, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 23:13:50.298 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:13:50.298 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:13:50.298 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 23:13:50.308 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:13:50.308 -07 000000501 INF: Autofocus start
17-03-17 23:13:50.308 -07 000000501 INF: MeasureProfile start
17-03-17 23:13:50.308 -07 000000409 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:13:50.318 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:13:50.318 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:13:50.318 -07 000000501 INF: MeasureProfile done
17-03-17 23:13:50.318 -07 000000501 INF: X=0  Z correction [um]=-0.0713522
17-03-17 23:13:50.318 -07 000000501 INF: Autofocus finished
17-03-17 23:13:50.518 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:13:50.518 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-17 23:13:50.528 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5380859375, Z-position -0.17619472500803. ----------
17-03-17 23:13:50.528 -07 000000610 INF: Cycle	73	Tile	9	Exposure Settings		A	470	G	226	T	226	C	470
17-03-17 23:13:50.528 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36985, sync = True, waitForSettling = True)
17-03-17 23:13:50.528 -07 000000610 INF: Z Motor: Moving to -0.169306 mm, started at -0.176195 mm, distance = 6.89 um
17-03-17 23:13:50.528 -07 000000610 INF: FPGA: Xmit ZDACW 36985\n [Z Motor]
17-03-17 23:13:50.528 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 23:13:50.538 -07 000000610 INF: FPGA: 'ZDACW 36985' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:13:50.538 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:13:50.538 -07 000000551 INF: FPGA: Recv ZDACR 36985
17-03-17 23:13:50.548 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:50.548 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:13:50.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:50.698 -07 000000448 INF: FPGA: Recv ZSGSRD 35645
17-03-17 23:13:50.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:13:50.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:50.708 -07 000000462 INF: FPGA: Recv ZSGSRD 35645
17-03-17 23:13:50.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:50.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:50.718 -07 000000576 INF: FPGA: Recv ZSGSRD 35645
17-03-17 23:13:50.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:50.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:50.728 -07 000000501 INF: FPGA: Recv ZSGSRD 35644
17-03-17 23:13:50.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:50.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:50.738 -07 000000627 INF: FPGA: Recv ZSGSRD 35647
17-03-17 23:13:50.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:50.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:50.748 -07 000000482 INF: FPGA: Recv ZSGSRD 35642
17-03-17 23:13:50.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:50.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:50.758 -07 000000415 INF: FPGA: Recv ZSGSRD 35643
17-03-17 23:13:50.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:50.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:50.768 -07 000000576 INF: FPGA: Recv ZSGSRD 35644
17-03-17 23:13:50.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:50.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:50.778 -07 000000501 INF: FPGA: Recv ZSGSRD 35646
17-03-17 23:13:50.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:50.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:50.788 -07 000000462 INF: FPGA: Recv ZSGSRD 35644
17-03-17 23:13:50.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:50.798 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:13:50.798 -07 000000593 INF: FPGA: Recv ZPIEZORD 31520
17-03-17 23:13:50.808 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:50.808 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.644 V. Piezo Error = -9.1 V.
17-03-17 23:13:50.808 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.3 um, Read 10 ADC samples: Avg = 35644 (-168.4 uncal um), Error = 0.9 uncal um, Median = 35644 (-168.4 uncal um), StdDev = 1 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 35642 (-168.4 uncal um), Max = 35647 (-168.5 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 23:13:50.808 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35644, posNoise = 3, negNoise = 2
17-03-17 23:13:50.808 -07 000000610 INF: Z Motor: After move to -0.169306, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:13:50.808 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 23:13:50.808 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:13:50.808 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:13:50.808 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:13:50.808 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:13:50.808 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:13:50.808 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:13:50.808 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:13:50.808 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:13:50.808 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:13:50.808 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:13:50.808 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:13:50.808 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:13:50.818 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:13:50.818 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:13:50.818 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:13:50.818 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:13:50.818 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 23:13:50.818 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:13:50.828 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 23:13:50.828 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 23:13:50.828 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 470 470 226 226 37162 150\n [Camera]
17-03-17 23:13:51.028 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:13:51.498 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 662
17-03-17 23:13:51.498 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 662
17-03-17 23:13:51.498 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:13:51.498 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 662
17-03-17 23:13:51.498 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 662
17-03-17 23:13:51.498 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:13:51.508 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:13:51.508 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2470426896, 0x0, 391868352) start.
17-03-17 23:13:51.508 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:13:51.508 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 23:13:51.688 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37162 855
17-03-17 23:13:51.838 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1008
17-03-17 23:13:51.888 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2470426896, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 23:13:51.888 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 23:13:51.888 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:13:51.888 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 23:13:51.888 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 23:13:51.888 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:13:51.888 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:13:51.888 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 23:13:51.898 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:13:51.898 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 23:13:52.048 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:13:52.048 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 72. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1154, R2=1202, Total=2356. Warn if over 250 bubbles per interval.
17-03-17 23:13:52.068 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1231
17-03-17 23:13:52.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1231
17-03-17 23:13:52.068 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:13:52.178 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1231
17-03-17 23:13:52.178 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1231
17-03-17 23:13:52.178 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:13:52.188 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:13:52.188 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 23:13:52.188 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:13:52.188 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 23:13:52.258 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP 1424
17-03-17 23:13:52.258 -07 000000448 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:13:52.258 -07 000000610 INF: FPGA: 'CAMDBLSNAP 470 470 226 226 37162 150' command took 4 ms to send, 1424 ms to get response, and 1432 ms overall
17-03-17 23:13:52.258 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:13:52.258 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5380859375, Z-Position -0.169307969592063. ------
17-03-17 23:13:52.258 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17608 mm
17-03-17 23:13:52.258 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:13:52.258 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:13:52.268 -07 000000478 INF: Z Motor: Entering MoveAbsStepped (DAC = 38466, sync = True, waitForSettling = False)
17-03-17 23:13:52.268 -07 000000478 INF: Z Motor: Moving to -0.176086 mm, started at -0.169308 mm, distance = -6.78 um
17-03-17 23:13:52.268 -07 000000478 INF: FPGA: Xmit ZDACW 38466\n [Z Motor]
17-03-17 23:13:52.268 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:13:52.268 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 23:13:52.268 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 23:13:52.268 -07 000000623 INF: Y Motor: Moving to 67.3826 mm, started at 66.5381 mm, delta = 0.8445 mm
17-03-17 23:13:52.268 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 23:13:52.278 -07 000000478 INF: FPGA: 'ZDACW 38466' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:13:52.278 -07 000000551 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:13:52.288 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:13:52.288 -07 000000415 INF: FPGA: Recv YRDPOS 136270
17-03-17 23:13:52.298 -07 000000478 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:13:52.298 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 23:13:52.298 -07 000000623 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:13:52.298 -07 000000623 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:13:52.298 -07 000000623 INF: Y Motor: Moving 1351 steps-31
17-03-17 23:13:52.298 -07 000000576 INF: FPGA: Recv ZDACR 38466
17-03-17 23:13:52.308 -07 000000478 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:13:52.308 -07 000000478 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-17 23:13:52.308 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:13:52.478 -07 000000429 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:13:52.478 -07 000000551 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 209 ms overall
17-03-17 23:13:52.568 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 23:13:52.568 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 23:13:52.568 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:13:52.568 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 23:13:52.568 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 23:13:52.568 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:13:52.568 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:13:52.568 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:13:52.568 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 506 ms.
17-03-17 23:13:52.578 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 23:13:52.678 -07 000000478 INF: FPGA: Recv YMVTILE
17-03-17 23:13:52.678 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-17 23:13:52.718 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:13:52.728 -07 000000409 INF: FPGA: Recv YRDPOS 137976
17-03-17 23:13:52.728 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 23:13:52.728 -07 000000623 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:13:52.728 -07 000000623 INF: Y Motor: Position error before settling (table move) = -24 encoder counts (-0.012 mm)
17-03-17 23:13:52.728 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.845 mm, average velocity = 2.194 mm/sec
17-03-17 23:13:53.678 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:13:53.678 -07 000000486 INF: FPGA: Recv YRDPOS 137976
17-03-17 23:13:53.688 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:13:53.688 -07 000000623 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:13:53.708 -07 000000623 INF: Y Motor: After move to 67.382607, error = -0.011513, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:13:53.708 -07 000000623 INF: Y Motor: Position error after settling (table move) = -24 encoder counts (-0.012 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:13:53.708 -07 000000623 INF: Y Motor: Moved to 67.3711 after 1442 ms (table move)
17-03-17 23:13:53.708 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176086 mm (DAC = 38466)
17-03-17 23:13:53.708 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:53.718 -07 000000593 INF: FPGA: Recv ZSGSRD 36707
17-03-17 23:13:53.718 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 23:13:53.718 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:53.718 -07 000000618 INF: FPGA: Recv ZSGSRD 36702
17-03-17 23:13:53.728 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:13:53.728 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:53.728 -07 000000482 INF: FPGA: Recv ZSGSRD 36698
17-03-17 23:13:53.738 -07 000000501 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:53.738 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:53.738 -07 000000593 INF: FPGA: Recv ZSGSRD 36698
17-03-17 23:13:53.748 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:53.748 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:53.748 -07 000000448 INF: FPGA: Recv ZSGSRD 36702
17-03-17 23:13:53.758 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:53.758 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:53.758 -07 000000541 INF: FPGA: Recv ZSGSRD 36702
17-03-17 23:13:53.768 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:53.768 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:53.768 -07 000000415 INF: FPGA: Recv ZSGSRD 36697
17-03-17 23:13:53.778 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:53.778 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:53.778 -07 000000478 INF: FPGA: Recv ZSGSRD 36695
17-03-17 23:13:53.788 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:53.788 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:53.788 -07 000000593 INF: FPGA: Recv ZSGSRD 36695
17-03-17 23:13:53.798 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:53.798 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:53.798 -07 000000429 INF: FPGA: Recv ZSGSRD 36707
17-03-17 23:13:53.808 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:53.808 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:13:53.808 -07 000000475 INF: FPGA: Recv ZPIEZORD 32941
17-03-17 23:13:53.818 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:53.818 -07 000000501 INF: Z Motor: Piezo is near 50.4 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.870 V. Piezo Error = -8.3 V.
17-03-17 23:13:53.818 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.1 um, Read 10 ADC samples: Avg = 36700 (-175.2 uncal um), Error = 0.9 uncal um, Median = 36700 (-175.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36695 (-175.2 uncal um), Max = 36707 (-175.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:13:53.818 -07 000000501 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36700, posNoise = 7, negNoise = 5
17-03-17 23:13:53.818 -07 000000501 INF: Z Motor: After move to -0.176086, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:13:53.818 -07 000000501 INF: Z Motor: Settle wait time = 1446 ms, measure time = 102 ms (allowed 150 ms), total time = 1548 ms
17-03-17 23:13:53.818 -07 000000501 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 23:13:53.868 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-17 23:13:53.868 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:13:53.868 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:13:53.868 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:13:53.868 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:13:53.868 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:13:53.868 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:13:53.868 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:13:53.868 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 23:13:53.868 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:13:53.878 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 23:13:53.878 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:13:53.888 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 23:13:53.888 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 23:13:53.888 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:13:53.928 -07 000000409 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:13:54.128 -07 000000547 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:13:54.128 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:13:54.138 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:13:54.138 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2451345512, 0x0, 559484976) start.
17-03-17 23:13:54.178 -07 000000618 INF: FPGA: Recv @CAMSNAP 282
17-03-17 23:13:54.178 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-17 23:13:54.178 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 286 ms overall
17-03-17 23:13:54.248 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2451345512, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 23:13:54.248 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:13:54.248 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:13:54.248 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 23:13:54.278 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:13:54.278 -07 000000475 INF: Autofocus start
17-03-17 23:13:54.278 -07 000000475 INF: MeasureProfile start
17-03-17 23:13:54.278 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:13:54.288 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:13:54.288 -07 000000486 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:13:54.288 -07 000000475 INF: MeasureProfile done
17-03-17 23:13:54.288 -07 000000475 INF: X=32  Z correction [um]=0.09220707
17-03-17 23:13:54.288 -07 000000475 INF: Autofocus finished
17-03-17 23:13:54.488 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:13:54.488 -07 000000486 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:13:54.488 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37109375, Z-position -0.176091937613762. ----------
17-03-17 23:13:54.488 -07 000000610 INF: Cycle	73	Tile	10	Exposure Settings		A	470	G	226	T	226	C	470
17-03-17 23:13:54.498 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36998, sync = True, waitForSettling = True)
17-03-17 23:13:54.498 -07 000000610 INF: Z Motor: Moving to -0.169366 mm, started at -0.176092 mm, distance = 6.73 um
17-03-17 23:13:54.498 -07 000000610 INF: FPGA: Xmit ZDACW 36998\n [Z Motor]
17-03-17 23:13:54.498 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 23:13:54.508 -07 000000610 INF: FPGA: 'ZDACW 36998' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:13:54.508 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:13:54.508 -07 000000415 INF: FPGA: Recv ZDACR 36998
17-03-17 23:13:54.518 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:54.518 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:13:54.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:54.668 -07 000000478 INF: FPGA: Recv ZSGSRD 35648
17-03-17 23:13:54.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:13:54.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:54.678 -07 000000475 INF: FPGA: Recv ZSGSRD 35659
17-03-17 23:13:54.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:54.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:54.688 -07 000000415 INF: FPGA: Recv ZSGSRD 35655
17-03-17 23:13:54.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:54.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:54.698 -07 000000448 INF: FPGA: Recv ZSGSRD 35647
17-03-17 23:13:54.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:54.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:54.708 -07 000000576 INF: FPGA: Recv ZSGSRD 35653
17-03-17 23:13:54.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:54.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:54.718 -07 000000501 INF: FPGA: Recv ZSGSRD 35657
17-03-17 23:13:54.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:54.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:54.728 -07 000000475 INF: FPGA: Recv ZSGSRD 35653
17-03-17 23:13:54.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:54.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:54.738 -07 000000415 INF: FPGA: Recv ZSGSRD 35656
17-03-17 23:13:54.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:54.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:54.748 -07 000000593 INF: FPGA: Recv ZSGSRD 35649
17-03-17 23:13:54.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:54.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:54.758 -07 000000478 INF: FPGA: Recv ZSGSRD 35659
17-03-17 23:13:54.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:54.768 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:13:54.768 -07 000000501 INF: FPGA: Recv ZPIEZORD 31550
17-03-17 23:13:54.778 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:54.778 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.646 V. Piezo Error = -9.1 V.
17-03-17 23:13:54.778 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.4 um, Read 10 ADC samples: Avg = 35654 (-168.5 uncal um), Error = 0.9 uncal um, Median = 35654 (-168.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35647 (-168.5 uncal um), Max = 35659 (-168.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 23:13:54.778 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35654, posNoise = 5, negNoise = 7
17-03-17 23:13:54.778 -07 000000610 INF: Z Motor: After move to -0.169366, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:13:54.778 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 23:13:54.778 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:13:54.778 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:13:54.778 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:13:54.778 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:13:54.778 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:13:54.778 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:13:54.778 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:13:54.778 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:13:54.778 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:13:54.778 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:13:54.778 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:13:54.778 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:13:54.788 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:13:54.788 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:13:54.788 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:13:54.788 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:13:54.798 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 23:13:54.798 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 23:13:54.798 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 23:13:54.798 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 23:13:54.798 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 470 470 226 226 37175 150\n [Camera]
17-03-17 23:13:54.848 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 73, FrontChillerTemperature: 4.027603,
17-03-17 23:13:54.998 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:13:55.468 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 662
17-03-17 23:13:55.468 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 662
17-03-17 23:13:55.468 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:13:55.478 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:13:55.478 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2466021592, 0x0, 391868352) start.
17-03-17 23:13:55.478 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 662
17-03-17 23:13:55.478 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 662
17-03-17 23:13:55.478 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:13:55.478 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:13:55.478 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 23:13:55.658 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37175 855
17-03-17 23:13:55.808 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1005
17-03-17 23:13:55.848 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2466021592, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 23:13:55.848 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 23:13:55.848 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:13:55.848 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:13:55.848 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 23:13:55.848 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 23:13:55.848 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-17 23:13:55.848 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:13:55.858 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:13:55.868 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 23:13:56.038 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1231
17-03-17 23:13:56.038 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1231
17-03-17 23:13:56.038 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:13:56.168 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1231
17-03-17 23:13:56.168 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1231
17-03-17 23:13:56.168 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:13:56.178 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:13:56.178 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:13:56.178 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 23:13:56.178 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 23:13:56.228 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1424
17-03-17 23:13:56.228 -07 000000551 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:13:56.228 -07 000000610 INF: FPGA: 'CAMDBLSNAP 470 470 226 226 37175 150' command took 2 ms to send, 1426 ms to get response, and 1431 ms overall
17-03-17 23:13:56.228 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:13:56.228 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37109375, Z-Position -0.16937221171348. ------
17-03-17 23:13:56.238 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:13:56.238 -07 000000409 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17570 mm
17-03-17 23:13:56.238 -07 000000409 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:13:56.238 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 23:13:56.238 -07 000000541 INF: Y Motor: Moving to 68.2126 mm, started at 67.3711 mm, delta = 0.8415 mm
17-03-17 23:13:56.238 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:13:56.238 -07 000000547 INF: Z Motor: Entering MoveAbsStepped (DAC = 38382, sync = True, waitForSettling = False)
17-03-17 23:13:56.238 -07 000000547 INF: Z Motor: Moving to -0.175702 mm, started at -0.169372 mm, distance = -6.33 um
17-03-17 23:13:56.248 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:56.248 -07 000000547 INF: FPGA: Xmit ZDACW 38382\n [Z Motor]
17-03-17 23:13:56.248 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 23:13:56.258 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:13:56.258 -07 000000547 INF: FPGA: 'ZDACW 38382' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 23:13:56.258 -07 000000561 INF: FPGA: Recv YRDPOS 137976
17-03-17 23:13:56.268 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:13:56.268 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 23:13:56.268 -07 000000541 INF: Y Motor: Encoder = 137976 = motor step 107793.8 = 67.3711 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:13:56.268 -07 000000541 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:13:56.268 -07 000000541 INF: Y Motor: Moving 1346 steps-24
17-03-17 23:13:56.278 -07 000000547 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:13:56.278 -07 000000475 INF: FPGA: Recv ZDACR 38382
17-03-17 23:13:56.288 -07 000000547 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:13:56.288 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:13:56.288 -07 000000547 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-17 23:13:56.468 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:13:56.468 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 3 ms to send, 195 ms to get response, and 225 ms overall
17-03-17 23:13:56.578 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 23:13:56.578 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 23:13:56.578 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:13:56.578 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 23:13:56.578 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 23:13:56.578 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:13:56.578 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:13:56.578 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 540 ms.
17-03-17 23:13:56.578 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:13:56.588 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-17 23:13:56.658 -07 000000551 INF: FPGA: Recv YMVTILE
17-03-17 23:13:56.658 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 23:13:56.698 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:13:56.708 -07 000000486 INF: FPGA: Recv YRDPOS 139682
17-03-17 23:13:56.708 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 23:13:56.708 -07 000000541 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:13:56.708 -07 000000541 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 23:13:56.708 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.842 mm, average velocity = 2.136 mm/sec
17-03-17 23:13:57.048 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:13:57.048 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 72. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1154, R2=1202, Total=2356. Warn if over 250 bubbles per interval.
17-03-17 23:13:57.658 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:13:57.658 -07 000000547 INF: FPGA: Recv YRDPOS 139682
17-03-17 23:13:57.668 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:57.668 -07 000000541 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:13:57.688 -07 000000541 INF: Y Motor: After move to 68.212608, error = -0.008507, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:13:57.688 -07 000000541 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:13:57.688 -07 000000541 INF: Y Motor: Moved to 68.2041 after 1452 ms (table move)
17-03-17 23:13:57.688 -07 000000409 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175702 mm (DAC = 38382)
17-03-17 23:13:57.688 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:57.698 -07 000000415 INF: FPGA: Recv ZSGSRD 36647
17-03-17 23:13:57.708 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:13:57.708 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:57.708 -07 000000547 INF: FPGA: Recv ZSGSRD 36643
17-03-17 23:13:57.718 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:57.718 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:57.718 -07 000000478 INF: FPGA: Recv ZSGSRD 36644
17-03-17 23:13:57.728 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:57.728 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:57.728 -07 000000475 INF: FPGA: Recv ZSGSRD 36642
17-03-17 23:13:57.738 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:57.738 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:57.738 -07 000000618 INF: FPGA: Recv ZSGSRD 36639
17-03-17 23:13:57.748 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:57.748 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:57.748 -07 000000551 INF: FPGA: Recv ZSGSRD 36640
17-03-17 23:13:57.758 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:57.758 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:57.758 -07 000000382 INF: FPGA: Recv ZSGSRD 36634
17-03-17 23:13:57.768 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:57.768 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:57.768 -07 000000482 INF: FPGA: Recv ZSGSRD 36640
17-03-17 23:13:57.778 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:57.778 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:57.778 -07 000000475 INF: FPGA: Recv ZSGSRD 36643
17-03-17 23:13:57.788 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:57.788 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:57.788 -07 000000502 INF: FPGA: Recv ZSGSRD 36645
17-03-17 23:13:57.798 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:57.798 -07 000000409 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:13:57.798 -07 000000415 INF: FPGA: Recv ZPIEZORD 32861
17-03-17 23:13:57.808 -07 000000409 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:57.808 -07 000000409 INF: Z Motor: Piezo is near 50.2 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.857 V. Piezo Error = -8.4 V.
17-03-17 23:13:57.808 -07 000000409 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.7 um, Read 10 ADC samples: Avg = 36642 (-174.8 uncal um), Error = 0.9 uncal um, Median = 36642 (-174.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36634 (-174.8 uncal um), Max = 36647 (-174.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 23:13:57.808 -07 000000409 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36642, posNoise = 5, negNoise = 8
17-03-17 23:13:57.808 -07 000000409 INF: Z Motor: After move to -0.175702, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:13:57.808 -07 000000409 INF: Z Motor: Settle wait time = 1454 ms, measure time = 111 ms (allowed 150 ms), total time = 1565 ms
17-03-17 23:13:57.808 -07 000000409 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 23:13:57.848 -07 000000409 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1608 ms
17-03-17 23:13:57.848 -07 000000409 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:13:57.848 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:13:57.848 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:13:57.848 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:13:57.848 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:13:57.848 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:13:57.848 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:13:57.848 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:13:57.858 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:13:57.858 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:13:57.858 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:13:57.858 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 23:13:57.858 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 23:13:57.868 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:13:57.908 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:13:58.108 -07 000000475 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:13:58.108 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:13:58.108 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:13:58.108 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2468220576, 0x0, 559484976) start.
17-03-17 23:13:58.148 -07 000000576 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:13:58.148 -07 000000623 INF: FPGA: Recv CAMSNAP
17-03-17 23:13:58.148 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 23:13:58.228 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2468220576, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 23:13:58.228 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:13:58.228 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:13:58.228 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 23:13:58.248 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:13:58.248 -07 000000593 INF: Autofocus start
17-03-17 23:13:58.248 -07 000000593 INF: MeasureProfile start
17-03-17 23:13:58.248 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:13:58.258 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:13:58.258 -07 000000475 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:13:58.268 -07 000000593 INF: MeasureProfile done
17-03-17 23:13:58.268 -07 000000593 INF: X=0  Z correction [um]=-0.0713522
17-03-17 23:13:58.268 -07 000000593 INF: Autofocus finished
17-03-17 23:13:58.458 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:13:58.458 -07 000000475 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:13:58.458 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.2041015625, Z-position -0.17571933330954. ----------
17-03-17 23:13:58.468 -07 000000610 INF: Cycle	73	Tile	11	Exposure Settings		A	470	G	226	T	226	C	470
17-03-17 23:13:58.468 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36878, sync = True, waitForSettling = True)
17-03-17 23:13:58.468 -07 000000610 INF: Z Motor: Moving to -0.168817 mm, started at -0.175719 mm, distance = 6.90 um
17-03-17 23:13:58.468 -07 000000610 INF: FPGA: Xmit ZDACW 36878\n [Z Motor]
17-03-17 23:13:58.468 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 23:13:58.478 -07 000000610 INF: FPGA: 'ZDACW 36878' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:13:58.478 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:13:58.478 -07 000000409 INF: FPGA: Recv ZDACR 36878
17-03-17 23:13:58.488 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:58.488 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:13:58.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:58.638 -07 000000627 INF: FPGA: Recv ZSGSRD 35572
17-03-17 23:13:58.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:13:58.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:58.648 -07 000000547 INF: FPGA: Recv ZSGSRD 35572
17-03-17 23:13:58.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:58.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:58.658 -07 000000475 INF: FPGA: Recv ZSGSRD 35568
17-03-17 23:13:58.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:58.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:58.668 -07 000000448 INF: FPGA: Recv ZSGSRD 35569
17-03-17 23:13:58.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:58.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:58.678 -07 000000576 INF: FPGA: Recv ZSGSRD 35572
17-03-17 23:13:58.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:58.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:58.688 -07 000000501 INF: FPGA: Recv ZSGSRD 35573
17-03-17 23:13:58.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:58.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:58.698 -07 000000547 INF: FPGA: Recv ZSGSRD 35570
17-03-17 23:13:58.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:58.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:58.708 -07 000000482 INF: FPGA: Recv ZSGSRD 35570
17-03-17 23:13:58.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:58.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:58.718 -07 000000448 INF: FPGA: Recv ZSGSRD 35572
17-03-17 23:13:58.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:13:58.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:13:58.728 -07 000000576 INF: FPGA: Recv ZSGSRD 35576
17-03-17 23:13:58.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:58.738 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:13:58.738 -07 000000501 INF: FPGA: Recv ZPIEZORD 31395
17-03-17 23:13:58.748 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:13:58.748 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.627 V. Piezo Error = -9.2 V.
17-03-17 23:13:58.748 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.8 um, Read 10 ADC samples: Avg = 35571 (-168.0 uncal um), Error = 0.8 uncal um, Median = 35572 (-168.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35568 (-167.9 uncal um), Max = 35576 (-168.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 23:13:58.748 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35571, posNoise = 5, negNoise = 3
17-03-17 23:13:58.748 -07 000000610 INF: Z Motor: After move to -0.168817, error = -0.000022, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:13:58.748 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 23:13:58.748 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:13:58.748 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:13:58.748 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:13:58.748 -07 000000409 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:13:58.748 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:13:58.748 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:13:58.748 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:13:58.748 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:13:58.748 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:13:58.748 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:13:58.748 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:13:58.748 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:13:58.758 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 23:13:58.758 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:13:58.758 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:13:58.758 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:13:58.768 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 23:13:58.768 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 23:13:58.768 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 23:13:58.768 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 23:13:58.768 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 470 470 226 226 37055 150\n [Camera]
17-03-17 23:13:58.968 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:13:59.448 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 666
17-03-17 23:13:59.448 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 666
17-03-17 23:13:59.448 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:13:59.448 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 666
17-03-17 23:13:59.448 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 666
17-03-17 23:13:59.448 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:13:59.448 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:13:59.448 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 23:13:59.568 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:13:59.568 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2602438304, 0x0, 418435064) start.
17-03-17 23:13:59.638 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37055 855
17-03-17 23:13:59.788 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1005
17-03-17 23:13:59.838 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 23:13:59.838 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 23:13:59.838 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:13:59.848 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:13:59.848 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 23:13:59.968 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2602438304, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 23:13:59.968 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 23:13:59.968 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:13:59.968 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 23:13:59.968 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 523 ms.
17-03-17 23:14:00.008 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1231
17-03-17 23:14:00.008 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1231
17-03-17 23:14:00.008 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:14:00.018 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1231
17-03-17 23:14:00.018 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1231
17-03-17 23:14:00.018 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:14:00.018 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:14:00.018 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 23:14:00.018 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:14:00.018 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 23:14:00.198 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP 1424
17-03-17 23:14:00.198 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:14:00.198 -07 000000610 INF: FPGA: 'CAMDBLSNAP 470 470 226 226 37055 150' command took 2 ms to send, 1419 ms to get response, and 1431 ms overall
17-03-17 23:14:00.208 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:14:00.208 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.2041015625, Z-Position -0.168839002105714. ------
17-03-17 23:14:00.208 -07 000000541 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17531 mm
17-03-17 23:14:00.208 -07 000000541 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:14:00.218 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:14:00.218 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 73, FrontChillerTemperature: 4.050752,
17-03-17 23:14:00.218 -07 000000409 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 23:14:00.218 -07 000000409 INF: Y Motor: Moving to 69.0426 mm, started at 68.2041 mm, delta = 0.8385 mm
17-03-17 23:14:00.218 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 38296, sync = True, waitForSettling = False)
17-03-17 23:14:00.218 -07 000000576 INF: Z Motor: Moving to -0.175308 mm, started at -0.168839 mm, distance = -6.47 um
17-03-17 23:14:00.218 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:14:00.228 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 23:14:00.238 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:14:00.238 -07 000000382 INF: FPGA: Recv YRDPOS 139682
17-03-17 23:14:00.248 -07 000000576 INF: FPGA: Xmit ZDACW 38296\n [Z Motor]
17-03-17 23:14:00.248 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 23:14:00.248 -07 000000409 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:14:00.248 -07 000000409 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:14:00.248 -07 000000409 INF: Y Motor: Moving 1342 steps-17
17-03-17 23:14:00.248 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 23:14:00.258 -07 000000486 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:14:00.258 -07 000000576 INF: FPGA: 'ZDACW 38296' command took 0 ms to send, 0 ms to get response, and 37 ms overall
17-03-17 23:14:00.288 -07 000000409 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:14:00.298 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:14:00.298 -07 000000501 INF: FPGA: Recv ZDACR 38296
17-03-17 23:14:00.308 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 49 ms overall
17-03-17 23:14:00.308 -07 000000576 INF: Z Motor: MoveAbsStepped took 88 ms (did NOT wait for settling yet))
17-03-17 23:14:00.418 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 23:14:00.418 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 23:14:00.418 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:14:00.418 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 23:14:00.418 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 23:14:00.418 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:14:00.418 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:14:00.418 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 23:14:00.418 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:14:00.428 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 23:14:00.458 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:14:00.458 -07 000000486 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 232 ms overall
17-03-17 23:14:00.658 -07 000000415 INF: FPGA: Recv YMVTILE
17-03-17 23:14:00.658 -07 000000409 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 417 ms overall
17-03-17 23:14:00.698 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:14:00.708 -07 000000618 INF: FPGA: Recv YRDPOS 141365
17-03-17 23:14:00.708 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 23:14:00.708 -07 000000409 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:14:00.708 -07 000000409 INF: Y Motor: Position error before settling (table move) = -34 encoder counts (-0.017 mm)
17-03-17 23:14:00.708 -07 000000409 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 417 ms, distance = 0.839 mm, average velocity = 2.011 mm/sec
17-03-17 23:14:01.658 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:14:01.658 -07 000000475 INF: FPGA: Recv YRDPOS 141365
17-03-17 23:14:01.668 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:01.668 -07 000000409 INF: Y Motor: Encoder = 141365 = motor step 110441.4 = 69.0259 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:14:01.688 -07 000000409 INF: Y Motor: After move to 69.042610, error = -0.016731, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:14:01.688 -07 000000409 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:14:01.688 -07 000000409 INF: Y Motor: Moved to 69.0259 after 1474 ms (table move)
17-03-17 23:14:01.688 -07 000000541 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175308 mm (DAC = 38296)
17-03-17 23:14:01.688 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:01.698 -07 000000576 INF: FPGA: Recv ZSGSRD 36584
17-03-17 23:14:01.698 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 23:14:01.698 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:01.698 -07 000000618 INF: FPGA: Recv ZSGSRD 36574
17-03-17 23:14:01.708 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:14:01.708 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:01.708 -07 000000482 INF: FPGA: Recv ZSGSRD 36583
17-03-17 23:14:01.718 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:01.718 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:01.718 -07 000000475 INF: FPGA: Recv ZSGSRD 36585
17-03-17 23:14:01.728 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:01.728 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:01.728 -07 000000462 INF: FPGA: Recv ZSGSRD 36581
17-03-17 23:14:01.738 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:01.738 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:01.738 -07 000000382 INF: FPGA: Recv ZSGSRD 36584
17-03-17 23:14:01.748 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:01.748 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:01.748 -07 000000448 INF: FPGA: Recv ZSGSRD 36575
17-03-17 23:14:01.758 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:01.758 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:01.758 -07 000000551 INF: FPGA: Recv ZSGSRD 36577
17-03-17 23:14:01.768 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:01.768 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:01.768 -07 000000502 INF: FPGA: Recv ZSGSRD 36577
17-03-17 23:14:01.778 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:01.778 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:01.778 -07 000000409 INF: FPGA: Recv ZSGSRD 36580
17-03-17 23:14:01.788 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:01.788 -07 000000541 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:14:01.788 -07 000000561 INF: FPGA: Recv ZPIEZORD 32750
17-03-17 23:14:01.798 -07 000000541 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:01.798 -07 000000541 INF: Z Motor: Piezo is near 50.0 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.844 V. Piezo Error = -8.5 V.
17-03-17 23:14:01.798 -07 000000541 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.3 um, Read 10 ADC samples: Avg = 36580 (-174.4 uncal um), Error = 0.9 uncal um, Median = 36580 (-174.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36574 (-174.4 uncal um), Max = 36585 (-174.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:14:01.798 -07 000000541 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36580, posNoise = 5, negNoise = 6
17-03-17 23:14:01.798 -07 000000541 INF: Z Motor: After move to -0.175308, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:14:01.798 -07 000000541 INF: Z Motor: Settle wait time = 1476 ms, measure time = 102 ms (allowed 150 ms), total time = 1578 ms
17-03-17 23:14:01.798 -07 000000541 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 23:14:01.848 -07 000000541 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1634 ms
17-03-17 23:14:01.848 -07 000000541 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:14:01.848 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:14:01.848 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:14:01.848 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:14:01.848 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:14:01.848 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:14:01.848 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:14:01.848 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:14:01.848 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:14:01.858 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:14:01.858 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:14:01.868 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 23:14:01.868 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 23:14:01.868 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:14:01.918 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:14:02.048 -07 000000409 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:14:02.048 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 72. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1154, R2=1202, Total=2356. Warn if over 250 bubbles per interval.
17-03-17 23:14:02.118 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:14:02.118 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:14:02.118 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:14:02.118 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2468220576, 0x0, 559484976) start.
17-03-17 23:14:02.158 -07 000000623 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:14:02.158 -07 000000478 INF: FPGA: Recv CAMSNAP
17-03-17 23:14:02.158 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 284 ms to get response, and 287 ms overall
17-03-17 23:14:02.238 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2468220576, 0x0, 559484976) end. Duration was 123 ms.
17-03-17 23:14:02.248 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:14:02.248 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 23:14:02.248 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 126 ms.
17-03-17 23:14:02.258 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:14:02.258 -07 000000502 INF: Autofocus start
17-03-17 23:14:02.258 -07 000000502 INF: MeasureProfile start
17-03-17 23:14:02.258 -07 000000409 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:14:02.268 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:14:02.268 -07 000000482 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:14:02.268 -07 000000502 INF: MeasureProfile done
17-03-17 23:14:02.268 -07 000000502 INF: X=48  Z correction [um]=0.1739867
17-03-17 23:14:02.278 -07 000000502 INF: Autofocus finished
17-03-17 23:14:02.468 -07 000000551 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:14:02.468 -07 000000482 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:14:02.468 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02587890625, Z-position -0.175321032156751. ----------
17-03-17 23:14:02.468 -07 000000610 INF: Cycle	73	Tile	12	Exposure Settings		A	470	G	226	T	226	C	470
17-03-17 23:14:02.478 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36847, sync = True, waitForSettling = True)
17-03-17 23:14:02.478 -07 000000610 INF: Z Motor: Moving to -0.168675 mm, started at -0.175321 mm, distance = 6.65 um
17-03-17 23:14:02.478 -07 000000610 INF: FPGA: Xmit ZDACW 36847\n [Z Motor]
17-03-17 23:14:02.478 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 23:14:02.488 -07 000000610 INF: FPGA: 'ZDACW 36847' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:02.488 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:14:02.488 -07 000000551 INF: FPGA: Recv ZDACR 36847
17-03-17 23:14:02.498 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:02.498 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:14:02.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:02.648 -07 000000627 INF: FPGA: Recv ZSGSRD 35553
17-03-17 23:14:02.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:02.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:02.658 -07 000000409 INF: FPGA: Recv ZSGSRD 35549
17-03-17 23:14:02.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:02.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:02.668 -07 000000561 INF: FPGA: Recv ZSGSRD 35547
17-03-17 23:14:02.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:14:02.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:02.678 -07 000000502 INF: FPGA: Recv ZSGSRD 35546
17-03-17 23:14:02.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:02.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:02.688 -07 000000415 INF: FPGA: Recv ZSGSRD 35548
17-03-17 23:14:02.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:02.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:02.698 -07 000000551 INF: FPGA: Recv ZSGSRD 35548
17-03-17 23:14:02.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:02.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:02.708 -07 000000482 INF: FPGA: Recv ZSGSRD 35546
17-03-17 23:14:02.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:02.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:02.718 -07 000000475 INF: FPGA: Recv ZSGSRD 35547
17-03-17 23:14:02.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:02.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:02.728 -07 000000462 INF: FPGA: Recv ZSGSRD 35551
17-03-17 23:14:02.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:02.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:02.738 -07 000000501 INF: FPGA: Recv ZSGSRD 35551
17-03-17 23:14:02.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:02.748 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:14:02.748 -07 000000627 INF: FPGA: Recv ZPIEZORD 31383
17-03-17 23:14:02.758 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:02.758 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.622 V. Piezo Error = -9.2 V.
17-03-17 23:14:02.758 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.7 um, Read 10 ADC samples: Avg = 35549 (-167.8 uncal um), Error = 0.8 uncal um, Median = 35548 (-167.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35546 (-167.8 uncal um), Max = 35553 (-167.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 23:14:02.758 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35549, posNoise = 4, negNoise = 3
17-03-17 23:14:02.758 -07 000000610 INF: Z Motor: After move to -0.168675, error = -0.000023, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:14:02.758 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 23:14:02.758 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:14:02.758 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:14:02.758 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:14:02.758 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:14:02.758 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:14:02.758 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:14:02.758 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:14:02.758 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:14:02.758 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:14:02.758 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:14:02.758 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:14:02.758 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:14:02.758 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:14:02.758 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:14:02.758 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:14:02.758 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:14:02.768 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 23:14:02.768 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 23:14:02.768 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 23:14:02.778 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:14:02.778 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 470 470 226 226 37023 150\n [Camera]
17-03-17 23:14:02.978 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 196
17-03-17 23:14:03.448 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 663
17-03-17 23:14:03.448 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 663
17-03-17 23:14:03.448 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:14:03.448 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 663
17-03-17 23:14:03.448 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 663
17-03-17 23:14:03.448 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:14:03.448 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:14:03.448 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 23:14:03.448 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:14:03.448 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2482896656, 0x0, 391868352) start.
17-03-17 23:14:03.638 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37023 855
17-03-17 23:14:03.788 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1005
17-03-17 23:14:03.828 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2482896656, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 23:14:03.828 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-17 23:14:03.828 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:14:03.828 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 23:14:03.828 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 23:14:03.828 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:14:03.828 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:14:03.828 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 23:14:03.828 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:14:03.838 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 23:14:04.018 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1231
17-03-17 23:14:04.018 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1231
17-03-17 23:14:04.018 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:14:04.018 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1231
17-03-17 23:14:04.018 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1231
17-03-17 23:14:04.018 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:14:04.018 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-17 23:14:04.018 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:14:04.018 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:14:04.018 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-17 23:14:04.208 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP 1423
17-03-17 23:14:04.208 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:14:04.208 -07 000000610 INF: FPGA: 'CAMDBLSNAP 470 470 226 226 37023 150' command took 2 ms to send, 1422 ms to get response, and 1431 ms overall
17-03-17 23:14:04.208 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:14:04.208 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02587890625, Z-Position -0.168697669438595. ------
17-03-17 23:14:04.208 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:14:04.208 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17505 mm
17-03-17 23:14:04.208 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:14:04.218 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 23:14:04.218 -07 000000502 INF: Y Motor: Moving to 69.8726 mm, started at 69.0259 mm, delta = 0.8467 mm
17-03-17 23:14:04.218 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:14:04.218 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 23:14:04.218 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:14:04.218 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 38240, sync = True, waitForSettling = False)
17-03-17 23:14:04.218 -07 000000561 INF: Z Motor: Moving to -0.175051 mm, started at -0.168698 mm, distance = -6.35 um
17-03-17 23:14:04.218 -07 000000382 INF: FPGA: Recv YRDPOS 141366
17-03-17 23:14:04.228 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:14:04.228 -07 000000502 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:14:04.228 -07 000000541 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:14:04.228 -07 000000502 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:14:04.228 -07 000000502 INF: Y Motor: Moving 1354 steps-34
17-03-17 23:14:04.238 -07 000000561 INF: FPGA: Xmit ZDACW 38240\n [Z Motor]
17-03-17 23:14:04.238 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 23:14:04.248 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:14:04.248 -07 000000561 INF: FPGA: 'ZDACW 38240' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 23:14:04.258 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:14:04.258 -07 000000415 INF: FPGA: Recv ZDACR 38240
17-03-17 23:14:04.268 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:14:04.268 -07 000000561 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-17 23:14:04.418 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 23:14:04.418 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 23:14:04.418 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:14:04.418 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 23:14:04.418 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 23:14:04.418 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:14:04.418 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:14:04.418 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:14:04.418 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 23:14:04.428 -07 000000623 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:14:04.428 -07 000000541 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 211 ms overall
17-03-17 23:14:04.428 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 23:14:04.618 -07 000000475 INF: FPGA: Recv YMVTILE
17-03-17 23:14:04.618 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 23:14:04.658 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:14:04.668 -07 000000547 INF: FPGA: Recv YRDPOS 143077
17-03-17 23:14:04.668 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 23:14:04.668 -07 000000502 INF: Y Motor: Encoder = 143077 = motor step 111778.9 = 69.8618 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:14:04.668 -07 000000502 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-17 23:14:04.668 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.847 mm, average velocity = 2.149 mm/sec
17-03-17 23:14:05.618 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:14:05.618 -07 000000486 INF: FPGA: Recv YRDPOS 143078
17-03-17 23:14:05.628 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:14:05.628 -07 000000502 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:14:05.648 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 73, FrontChillerTemperature: 4.027603,
17-03-17 23:14:05.648 -07 000000502 INF: Y Motor: After move to 69.872612, error = -0.010307, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:14:05.648 -07 000000502 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 23:14:05.648 -07 000000502 INF: Y Motor: Moved to 69.8623 after 1437 ms (table move)
17-03-17 23:14:05.658 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175051 mm (DAC = 38240)
17-03-17 23:14:05.678 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:05.678 -07 000000627 INF: FPGA: Recv ZSGSRD 36538
17-03-17 23:14:05.688 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 23:14:05.688 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:05.688 -07 000000623 INF: FPGA: Recv ZSGSRD 36547
17-03-17 23:14:05.698 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:05.708 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:05.708 -07 000000547 INF: FPGA: Recv ZSGSRD 36540
17-03-17 23:14:05.718 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:14:05.718 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:05.718 -07 000000623 INF: FPGA: Recv ZSGSRD 36541
17-03-17 23:14:05.728 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:05.728 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:05.728 -07 000000561 INF: FPGA: Recv ZSGSRD 36536
17-03-17 23:14:05.738 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:05.738 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:05.738 -07 000000593 INF: FPGA: Recv ZSGSRD 36539
17-03-17 23:14:05.748 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:05.748 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:05.748 -07 000000478 INF: FPGA: Recv ZSGSRD 36541
17-03-17 23:14:05.758 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:05.758 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:05.758 -07 000000482 INF: FPGA: Recv ZSGSRD 36540
17-03-17 23:14:05.768 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:05.768 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:05.768 -07 000000448 INF: FPGA: Recv ZSGSRD 36541
17-03-17 23:14:05.778 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:05.778 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:05.778 -07 000000415 INF: FPGA: Recv ZSGSRD 36542
17-03-17 23:14:05.788 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:05.788 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:14:05.788 -07 000000382 INF: FPGA: Recv ZPIEZORD 32745
17-03-17 23:14:05.798 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:05.798 -07 000000618 INF: Z Motor: Piezo is near 50.0 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.835 V. Piezo Error = -8.4 V.
17-03-17 23:14:05.798 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.1 um, Read 10 ADC samples: Avg = 36540 (-174.2 uncal um), Error = 0.9 uncal um, Median = 36540 (-174.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36536 (-174.2 uncal um), Max = 36547 (-174.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:14:05.798 -07 000000618 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36540, posNoise = 7, negNoise = 4
17-03-17 23:14:05.798 -07 000000618 INF: Z Motor: After move to -0.175051, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:14:05.798 -07 000000618 INF: Z Motor: Settle wait time = 1438 ms, measure time = 139 ms (allowed 150 ms), total time = 1577 ms
17-03-17 23:14:05.798 -07 000000618 INF: Z Motor: Waiting extra 11 ms after reading position to reach expected total of 150 ms
17-03-17 23:14:05.818 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1601 ms
17-03-17 23:14:05.818 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:14:05.818 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:14:05.818 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:14:05.818 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:14:05.818 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:14:05.818 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:14:05.818 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:14:05.818 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:14:05.818 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:14:05.828 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:14:05.828 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:14:05.828 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 23:14:05.828 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 23:14:05.838 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:14:05.878 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:14:06.078 -07 000000593 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:14:06.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:14:06.078 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:14:06.088 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) start.
17-03-17 23:14:06.118 -07 000000576 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:14:06.118 -07 000000627 INF: FPGA: Recv CAMSNAP
17-03-17 23:14:06.118 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 23:14:06.198 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 23:14:06.198 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:14:06.198 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:14:06.198 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-17 23:14:06.218 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:14:06.218 -07 000000593 INF: Autofocus start
17-03-17 23:14:06.218 -07 000000593 INF: MeasureProfile start
17-03-17 23:14:06.218 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:14:06.228 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:14:06.228 -07 000000478 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:14:06.228 -07 000000593 INF: MeasureProfile done
17-03-17 23:14:06.228 -07 000000593 INF: X=0  Z correction [um]=-0.0713522
17-03-17 23:14:06.228 -07 000000593 INF: Autofocus finished
17-03-17 23:14:06.428 -07 000000475 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:14:06.428 -07 000000478 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:14:06.428 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.8623046875, Z-position -0.17506406367108. ----------
17-03-17 23:14:06.428 -07 000000610 INF: Cycle	73	Tile	13	Exposure Settings		A	470	G	226	T	226	C	470
17-03-17 23:14:06.438 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36737, sync = True, waitForSettling = True)
17-03-17 23:14:06.438 -07 000000610 INF: Z Motor: Moving to -0.168171 mm, started at -0.175064 mm, distance = 6.89 um
17-03-17 23:14:06.438 -07 000000610 INF: FPGA: Xmit ZDACW 36737\n [Z Motor]
17-03-17 23:14:06.438 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 23:14:06.448 -07 000000610 INF: FPGA: 'ZDACW 36737' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:14:06.448 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:14:06.448 -07 000000462 INF: FPGA: Recv ZDACR 36737
17-03-17 23:14:06.458 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:06.458 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:14:06.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:06.608 -07 000000593 INF: FPGA: Recv ZSGSRD 35473
17-03-17 23:14:06.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:14:06.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:06.618 -07 000000618 INF: FPGA: Recv ZSGSRD 35463
17-03-17 23:14:06.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:06.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:06.628 -07 000000478 INF: FPGA: Recv ZSGSRD 35468
17-03-17 23:14:06.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:06.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:06.638 -07 000000486 INF: FPGA: Recv ZSGSRD 35469
17-03-17 23:14:06.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:06.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:06.648 -07 000000502 INF: FPGA: Recv ZSGSRD 35465
17-03-17 23:14:06.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:06.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:06.658 -07 000000593 INF: FPGA: Recv ZSGSRD 35468
17-03-17 23:14:06.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:06.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:06.668 -07 000000618 INF: FPGA: Recv ZSGSRD 35469
17-03-17 23:14:06.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:06.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:06.678 -07 000000576 INF: FPGA: Recv ZSGSRD 35476
17-03-17 23:14:06.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:06.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:06.688 -07 000000486 INF: FPGA: Recv ZSGSRD 35473
17-03-17 23:14:06.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:06.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:06.698 -07 000000502 INF: FPGA: Recv ZSGSRD 35465
17-03-17 23:14:06.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:06.708 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:14:06.708 -07 000000415 INF: FPGA: Recv ZPIEZORD 31298
17-03-17 23:14:06.718 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:06.718 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.606 V. Piezo Error = -9.2 V.
17-03-17 23:14:06.718 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.2 um, Read 10 ADC samples: Avg = 35469 (-167.3 uncal um), Error = 0.9 uncal um, Median = 35468 (-167.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35463 (-167.3 uncal um), Max = 35476 (-167.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:14:06.718 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35469, posNoise = 7, negNoise = 6
17-03-17 23:14:06.718 -07 000000610 INF: Z Motor: After move to -0.168171, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:14:06.718 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 23:14:06.718 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:14:06.718 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:14:06.718 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:14:06.718 -07 000000409 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:14:06.718 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:14:06.718 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:14:06.718 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:14:06.718 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:14:06.718 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:14:06.718 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:14:06.718 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:14:06.718 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:14:06.728 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 23:14:06.728 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:14:06.728 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 23:14:06.728 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:14:06.738 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 23:14:06.738 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 23:14:06.738 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 23:14:06.738 -07 000000409 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:14:06.738 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 470 470 226 226 36914 150\n [Camera]
17-03-17 23:14:06.938 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:14:07.048 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:14:07.048 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 72. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1154, R2=1202, Total=2356. Warn if over 250 bubbles per interval.
17-03-17 23:14:07.408 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 662
17-03-17 23:14:07.408 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 662
17-03-17 23:14:07.408 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:14:07.408 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:14:07.408 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 23:14:07.408 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 662
17-03-17 23:14:07.408 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 662
17-03-17 23:14:07.418 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:14:07.418 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:14:07.418 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 23:14:07.598 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36914 855
17-03-17 23:14:07.748 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1005
17-03-17 23:14:07.798 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 23:14:07.798 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 23:14:07.798 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:14:07.798 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 23:14:07.798 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 23:14:07.798 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:14:07.798 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:14:07.798 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 23:14:07.808 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:14:07.808 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 23:14:07.978 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1233
17-03-17 23:14:07.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1233
17-03-17 23:14:07.978 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:14:07.978 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1233
17-03-17 23:14:07.978 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:14:07.978 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1233
17-03-17 23:14:07.988 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 23:14:07.988 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:14:07.988 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:14:07.988 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 23:14:08.168 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1424
17-03-17 23:14:08.168 -07 000000593 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:14:08.168 -07 000000610 INF: FPGA: 'CAMDBLSNAP 470 470 226 226 36914 150' command took 2 ms to send, 1427 ms to get response, and 1434 ms overall
17-03-17 23:14:08.168 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:14:08.168 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.8623046875, Z-Position -0.168183732467254. ------
17-03-17 23:14:08.178 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:14:08.178 -07 000000547 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17459 mm
17-03-17 23:14:08.178 -07 000000547 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:14:08.178 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:14:08.178 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 23:14:08.178 -07 000000561 INF: Y Motor: Moving to 70.7026 mm, started at 69.8623 mm, delta = 0.8403 mm
17-03-17 23:14:08.178 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 38140, sync = True, waitForSettling = False)
17-03-17 23:14:08.178 -07 000000502 INF: Z Motor: Moving to -0.174594 mm, started at -0.168184 mm, distance = -6.41 um
17-03-17 23:14:08.188 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:14:08.188 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:14:08.188 -07 000000482 INF: FPGA: Recv YRDPOS 143078
17-03-17 23:14:08.198 -07 000000502 INF: FPGA: Xmit ZDACW 38140\n [Z Motor]
17-03-17 23:14:08.198 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 23:14:08.198 -07 000000561 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:14:08.198 -07 000000561 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:14:08.198 -07 000000561 INF: Y Motor: Moving 1344 steps-22
17-03-17 23:14:08.198 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 23:14:08.208 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:14:08.208 -07 000000502 INF: FPGA: 'ZDACW 38140' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 23:14:08.218 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:14:08.228 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:14:08.228 -07 000000576 INF: FPGA: Recv ZDACR 38140
17-03-17 23:14:08.238 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:14:08.238 -07 000000502 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 23:14:08.378 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 23:14:08.378 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 23:14:08.378 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:14:08.378 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 23:14:08.378 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 23:14:08.378 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:14:08.378 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:14:08.388 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:14:08.388 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 23:14:08.388 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 23:14:08.408 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:14:08.408 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 23:14:08.588 -07 000000486 INF: FPGA: Recv YMVTILE
17-03-17 23:14:08.588 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 23:14:08.628 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:14:08.638 -07 000000415 INF: FPGA: Recv YRDPOS 144768
17-03-17 23:14:08.638 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 23:14:08.638 -07 000000561 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:14:08.638 -07 000000561 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 23:14:08.638 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.117 mm/sec
17-03-17 23:14:09.588 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:14:09.588 -07 000000482 INF: FPGA: Recv YRDPOS 144768
17-03-17 23:14:09.598 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:14:09.598 -07 000000561 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:14:09.618 -07 000000561 INF: Y Motor: After move to 70.702606, error = -0.015106, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:14:09.618 -07 000000561 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:14:09.618 -07 000000561 INF: Y Motor: Moved to 70.6875 after 1438 ms (table move)
17-03-17 23:14:09.618 -07 000000547 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174594 mm (DAC = 38140)
17-03-17 23:14:09.618 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:09.628 -07 000000415 INF: FPGA: Recv ZSGSRD 36473
17-03-17 23:14:09.628 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 23:14:09.628 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:09.628 -07 000000448 INF: FPGA: Recv ZSGSRD 36469
17-03-17 23:14:09.638 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:14:09.638 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:09.638 -07 000000501 INF: FPGA: Recv ZSGSRD 36474
17-03-17 23:14:09.648 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:09.648 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:09.648 -07 000000482 INF: FPGA: Recv ZSGSRD 36465
17-03-17 23:14:09.658 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:09.658 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:09.658 -07 000000623 INF: FPGA: Recv ZSGSRD 36469
17-03-17 23:14:09.668 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:09.668 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:09.668 -07 000000618 INF: FPGA: Recv ZSGSRD 36470
17-03-17 23:14:09.678 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:09.678 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:09.678 -07 000000475 INF: FPGA: Recv ZSGSRD 36472
17-03-17 23:14:09.688 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:09.688 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:09.688 -07 000000501 INF: FPGA: Recv ZSGSRD 36465
17-03-17 23:14:09.698 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:09.698 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:09.698 -07 000000429 INF: FPGA: Recv ZSGSRD 36465
17-03-17 23:14:09.708 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:09.708 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:09.708 -07 000000561 INF: FPGA: Recv ZSGSRD 36466
17-03-17 23:14:09.718 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:09.718 -07 000000547 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:14:09.718 -07 000000576 INF: FPGA: Recv ZPIEZORD 32616
17-03-17 23:14:09.728 -07 000000547 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:09.728 -07 000000547 INF: Z Motor: Piezo is near 49.7 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.820 V. Piezo Error = -8.5 V.
17-03-17 23:14:09.728 -07 000000547 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.6 um, Read 10 ADC samples: Avg = 36469 (-173.7 uncal um), Error = 0.9 uncal um, Median = 36469 (-173.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36465 (-173.7 uncal um), Max = 36474 (-173.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:14:09.728 -07 000000547 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36469, posNoise = 5, negNoise = 4
17-03-17 23:14:09.728 -07 000000547 INF: Z Motor: After move to -0.174594, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:14:09.728 -07 000000547 INF: Z Motor: Settle wait time = 1440 ms, measure time = 102 ms (allowed 150 ms), total time = 1542 ms
17-03-17 23:14:09.728 -07 000000547 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 23:14:09.778 -07 000000547 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms
17-03-17 23:14:09.778 -07 000000547 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:14:09.778 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:14:09.778 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:14:09.778 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:14:09.778 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:14:09.778 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:14:09.778 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:14:09.778 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:14:09.778 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:14:09.788 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:14:09.788 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:14:09.798 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 23:14:09.798 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 23:14:09.798 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:14:09.848 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 43
17-03-17 23:14:10.048 -07 000000547 INF: FPGA: Recv @CAMSNAP img rdy 243
17-03-17 23:14:10.048 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 243
17-03-17 23:14:10.048 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:14:10.048 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 674752456, 0x0, 559484976) start.
17-03-17 23:14:10.078 -07 000000623 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:14:10.088 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 23:14:10.088 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 23:14:10.178 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 674752456, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 23:14:10.178 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:14:10.178 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:14:10.178 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-17 23:14:10.188 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:14:10.188 -07 000000576 INF: Autofocus start
17-03-17 23:14:10.188 -07 000000576 INF: MeasureProfile start
17-03-17 23:14:10.188 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:14:10.198 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:14:10.198 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:14:10.198 -07 000000576 INF: MeasureProfile done
17-03-17 23:14:10.198 -07 000000576 INF: X=32  Z correction [um]=0.09220707
17-03-17 23:14:10.198 -07 000000576 INF: Autofocus finished
17-03-17 23:14:10.398 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:14:10.398 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:14:10.398 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6875, Z-position -0.174607944609015. ----------
17-03-17 23:14:10.398 -07 000000610 INF: Cycle	73	Tile	14	Exposure Settings		A	470	G	226	T	226	C	470
17-03-17 23:14:10.408 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36672, sync = True, waitForSettling = True)
17-03-17 23:14:10.408 -07 000000610 INF: Z Motor: Moving to -0.167874 mm, started at -0.174608 mm, distance = 6.73 um
17-03-17 23:14:10.408 -07 000000610 INF: FPGA: Xmit ZDACW 36672\n [Z Motor]
17-03-17 23:14:10.408 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 23:14:10.418 -07 000000610 INF: FPGA: 'ZDACW 36672' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:14:10.418 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:14:10.418 -07 000000475 INF: FPGA: Recv ZDACR 36672
17-03-17 23:14:10.428 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:10.428 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:14:10.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:10.578 -07 000000409 INF: FPGA: Recv ZSGSRD 35422
17-03-17 23:14:10.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:14:10.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:10.588 -07 000000486 INF: FPGA: Recv ZSGSRD 35426
17-03-17 23:14:10.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:10.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:10.598 -07 000000623 INF: FPGA: Recv ZSGSRD 35422
17-03-17 23:14:10.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:10.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:10.608 -07 000000576 INF: FPGA: Recv ZSGSRD 35417
17-03-17 23:14:10.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:10.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:10.618 -07 000000475 INF: FPGA: Recv ZSGSRD 35424
17-03-17 23:14:10.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:10.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:10.628 -07 000000482 INF: FPGA: Recv ZSGSRD 35424
17-03-17 23:14:10.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:10.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:10.638 -07 000000501 INF: FPGA: Recv ZSGSRD 35422
17-03-17 23:14:10.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:10.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:10.648 -07 000000409 INF: FPGA: Recv ZSGSRD 35422
17-03-17 23:14:10.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:10.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:10.658 -07 000000382 INF: FPGA: Recv ZSGSRD 35423
17-03-17 23:14:10.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:10.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:10.668 -07 000000475 INF: FPGA: Recv ZSGSRD 35421
17-03-17 23:14:10.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:10.678 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:14:10.678 -07 000000547 INF: FPGA: Recv ZPIEZORD 31255
17-03-17 23:14:10.688 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:10.688 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.596 V. Piezo Error = -9.2 V.
17-03-17 23:14:10.688 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.9 um, Read 10 ADC samples: Avg = 35422 (-167.0 uncal um), Error = 0.9 uncal um, Median = 35422 (-167.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35417 (-167.0 uncal um), Max = 35426 (-167.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:14:10.688 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35422, posNoise = 4, negNoise = 5
17-03-17 23:14:10.688 -07 000000610 INF: Z Motor: After move to -0.167874, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:14:10.688 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 23:14:10.688 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:14:10.688 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:14:10.688 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:14:10.688 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:14:10.688 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:14:10.688 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:14:10.688 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:14:10.688 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:14:10.688 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:14:10.688 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:14:10.688 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:14:10.688 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:14:10.698 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:14:10.698 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:14:10.698 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:14:10.698 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:14:10.708 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-17 23:14:10.708 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 23:14:10.708 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 23:14:10.708 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 23:14:10.718 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 470 470 226 226 36849 150\n [Camera]
17-03-17 23:14:10.918 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:14:11.028 -07 000000409 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 73, FrontChillerTemperature: 4.026244,
17-03-17 23:14:11.388 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 662
17-03-17 23:14:11.388 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 662
17-03-17 23:14:11.388 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:14:11.388 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:14:11.388 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 23:14:11.388 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 662
17-03-17 23:14:11.388 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 662
17-03-17 23:14:11.388 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:14:11.388 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:14:11.388 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 23:14:11.578 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36849 855
17-03-17 23:14:11.728 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1005
17-03-17 23:14:11.768 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 23:14:11.768 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 23:14:11.768 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:14:11.778 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 23:14:11.778 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 23:14:11.778 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:14:11.778 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:14:11.778 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 23:14:11.778 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:14:11.788 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 23:14:11.948 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1231
17-03-17 23:14:11.948 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1231
17-03-17 23:14:11.958 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:14:11.958 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:14:11.958 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 23:14:11.958 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1231
17-03-17 23:14:11.958 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1231
17-03-17 23:14:11.958 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:14:11.958 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:14:11.958 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 23:14:12.048 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:14:12.048 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 72. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1154, R2=1202, Total=2356. Warn if over 250 bubbles per interval.
17-03-17 23:14:12.148 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1426
17-03-17 23:14:12.148 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:14:12.148 -07 000000610 INF: FPGA: 'CAMDBLSNAP 470 470 226 226 36849 150' command took 2 ms to send, 1424 ms to get response, and 1436 ms overall
17-03-17 23:14:12.148 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:14:12.148 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6875, Z-Position -0.167881794496592. ------
17-03-17 23:14:12.158 -07 000000482 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17460 mm
17-03-17 23:14:12.158 -07 000000482 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:14:12.158 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:14:12.158 -07 000000627 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 23:14:12.158 -07 000000627 INF: Y Motor: Moving to 71.5326 mm, started at 70.6875 mm, delta = 0.8451 mm
17-03-17 23:14:12.158 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 38141, sync = True, waitForSettling = False)
17-03-17 23:14:12.158 -07 000000382 INF: Z Motor: Moving to -0.174598 mm, started at -0.167882 mm, distance = -6.72 um
17-03-17 23:14:12.158 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:14:12.168 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:14:12.168 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:14:12.168 -07 000000561 INF: FPGA: Recv YRDPOS 144768
17-03-17 23:14:12.178 -07 000000382 INF: FPGA: Xmit ZDACW 38141\n [Z Motor]
17-03-17 23:14:12.178 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 23:14:12.178 -07 000000627 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:14:12.178 -07 000000627 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:14:12.178 -07 000000627 INF: Y Motor: Moving 1352 steps-31
17-03-17 23:14:12.178 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 23:14:12.188 -07 000000547 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:14:12.188 -07 000000382 INF: FPGA: 'ZDACW 38141' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 23:14:12.198 -07 000000627 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:14:12.208 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:14:12.208 -07 000000623 INF: FPGA: Recv ZDACR 38141
17-03-17 23:14:12.218 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:14:12.218 -07 000000382 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-17 23:14:12.338 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 23:14:12.338 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 23:14:12.338 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:14:12.338 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 23:14:12.338 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 23:14:12.338 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:14:12.338 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:14:12.348 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 23:14:12.348 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 23:14:12.348 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 23:14:12.388 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:14:12.388 -07 000000547 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 23:14:12.568 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-17 23:14:12.568 -07 000000627 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 23:14:12.608 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:14:12.618 -07 000000502 INF: FPGA: Recv YRDPOS 146468
17-03-17 23:14:12.618 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 23:14:12.618 -07 000000627 INF: Y Motor: Encoder = 146468 = motor step 114428.1 = 71.5176 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:14:12.618 -07 000000627 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 23:14:12.618 -07 000000627 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.129 mm/sec
17-03-17 23:14:13.568 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:14:13.568 -07 000000415 INF: FPGA: Recv YRDPOS 146469
17-03-17 23:14:13.578 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:14:13.578 -07 000000627 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:14:13.598 -07 000000627 INF: Y Motor: After move to 71.532608, error = -0.014542, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:14:13.598 -07 000000627 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 23:14:13.598 -07 000000627 INF: Y Motor: Moved to 71.5181 after 1441 ms (table move)
17-03-17 23:14:13.598 -07 000000482 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174598 mm (DAC = 38141)
17-03-17 23:14:13.598 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:13.608 -07 000000593 INF: FPGA: Recv ZSGSRD 36467
17-03-17 23:14:13.618 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:14:13.618 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:13.618 -07 000000551 INF: FPGA: Recv ZSGSRD 36466
17-03-17 23:14:13.628 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:13.628 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:13.628 -07 000000502 INF: FPGA: Recv ZSGSRD 36472
17-03-17 23:14:13.638 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:13.638 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:13.638 -07 000000478 INF: FPGA: Recv ZSGSRD 36478
17-03-17 23:14:13.648 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:13.648 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:13.648 -07 000000618 INF: FPGA: Recv ZSGSRD 36469
17-03-17 23:14:13.658 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:13.658 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:13.658 -07 000000561 INF: FPGA: Recv ZSGSRD 36467
17-03-17 23:14:13.668 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:13.668 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:13.668 -07 000000448 INF: FPGA: Recv ZSGSRD 36464
17-03-17 23:14:13.678 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:13.678 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:13.678 -07 000000502 INF: FPGA: Recv ZSGSRD 36472
17-03-17 23:14:13.688 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:13.688 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:13.688 -07 000000486 INF: FPGA: Recv ZSGSRD 36465
17-03-17 23:14:13.698 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:13.698 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:13.698 -07 000000623 INF: FPGA: Recv ZSGSRD 36465
17-03-17 23:14:13.708 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:13.708 -07 000000482 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:14:13.708 -07 000000618 INF: FPGA: Recv ZPIEZORD 32684
17-03-17 23:14:13.718 -07 000000482 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:13.718 -07 000000482 INF: Z Motor: Piezo is near 49.8 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.820 V. Piezo Error = -8.4 V.
17-03-17 23:14:13.718 -07 000000482 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.6 um, Read 10 ADC samples: Avg = 36468 (-173.7 uncal um), Error = 0.9 uncal um, Median = 36467 (-173.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36464 (-173.7 uncal um), Max = 36478 (-173.8 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:14:13.718 -07 000000482 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36468, posNoise = 10, negNoise = 4
17-03-17 23:14:13.718 -07 000000482 INF: Z Motor: After move to -0.174598, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:14:13.718 -07 000000482 INF: Z Motor: Settle wait time = 1444 ms, measure time = 111 ms (allowed 150 ms), total time = 1555 ms
17-03-17 23:14:13.718 -07 000000482 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 23:14:13.758 -07 000000482 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1597 ms
17-03-17 23:14:13.758 -07 000000482 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:14:13.758 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:14:13.758 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:14:13.758 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:14:13.758 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:14:13.758 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:14:13.758 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:14:13.758 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:14:13.758 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:14:13.768 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:14:13.768 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:14:13.778 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 23:14:13.778 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 23:14:13.778 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:14:13.828 -07 000000448 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:14:14.028 -07 000000478 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:14:14.028 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:14:14.028 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:14:14.028 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2539065104, 0x0, 559484976) start.
17-03-17 23:14:14.068 -07 000000561 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:14:14.068 -07 000000415 INF: FPGA: Recv CAMSNAP
17-03-17 23:14:14.068 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 284 ms overall
17-03-17 23:14:14.148 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2539065104, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 23:14:14.148 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:14:14.148 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 23:14:14.148 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 23:14:14.168 -07 000000547 INF: Autofocus start
17-03-17 23:14:14.168 -07 000000547 INF: MeasureProfile start
17-03-17 23:14:14.168 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:14:14.168 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:14:14.178 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:14:14.178 -07 000000482 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:14:14.178 -07 000000547 INF: MeasureProfile done
17-03-17 23:14:14.178 -07 000000547 INF: X=-96  Z correction [um]=-0.5732754
17-03-17 23:14:14.178 -07 000000547 INF: Autofocus finished
17-03-17 23:14:14.378 -07 000000541 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:14:14.378 -07 000000482 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 205 ms overall
17-03-17 23:14:14.378 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51806640625, Z-position -0.174601520396874. ----------
17-03-17 23:14:14.388 -07 000000610 INF: Cycle	73	Tile	15	Exposure Settings		A	470	G	226	T	226	C	470
17-03-17 23:14:14.388 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36528, sync = True, waitForSettling = True)
17-03-17 23:14:14.388 -07 000000610 INF: Z Motor: Moving to -0.167214 mm, started at -0.174602 mm, distance = 7.39 um
17-03-17 23:14:14.388 -07 000000610 INF: FPGA: Xmit ZDACW 36528\n [Z Motor]
17-03-17 23:14:14.388 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 23:14:14.398 -07 000000610 INF: FPGA: 'ZDACW 36528' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:14:14.398 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:14:14.398 -07 000000541 INF: FPGA: Recv ZDACR 36528
17-03-17 23:14:14.408 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:14.408 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:14:14.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:14.558 -07 000000623 INF: FPGA: Recv ZSGSRD 35320
17-03-17 23:14:14.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:14:14.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:14.568 -07 000000462 INF: FPGA: Recv ZSGSRD 35322
17-03-17 23:14:14.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:14.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:14.578 -07 000000448 INF: FPGA: Recv ZSGSRD 35317
17-03-17 23:14:14.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:14.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:14.588 -07 000000561 INF: FPGA: Recv ZSGSRD 35323
17-03-17 23:14:14.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:14.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:14.598 -07 000000551 INF: FPGA: Recv ZSGSRD 35323
17-03-17 23:14:14.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:14.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:14.608 -07 000000576 INF: FPGA: Recv ZSGSRD 35321
17-03-17 23:14:14.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:14.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:14.618 -07 000000547 INF: FPGA: Recv ZSGSRD 35321
17-03-17 23:14:14.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:14.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:14.628 -07 000000409 INF: FPGA: Recv ZSGSRD 35317
17-03-17 23:14:14.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:14.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:14.638 -07 000000502 INF: FPGA: Recv ZSGSRD 35320
17-03-17 23:14:14.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:14.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:14.648 -07 000000382 INF: FPGA: Recv ZSGSRD 35321
17-03-17 23:14:14.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:14.658 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:14:14.658 -07 000000502 INF: FPGA: Recv ZPIEZORD 31155
17-03-17 23:14:14.668 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:14.668 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.574 V. Piezo Error = -9.2 V.
17-03-17 23:14:14.668 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.2 um, Read 10 ADC samples: Avg = 35320 (-166.4 uncal um), Error = 0.9 uncal um, Median = 35321 (-166.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35317 (-166.3 uncal um), Max = 35323 (-166.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 23:14:14.668 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35320, posNoise = 3, negNoise = 3
17-03-17 23:14:14.668 -07 000000610 INF: Z Motor: After move to -0.167214, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:14:14.668 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 23:14:14.668 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:14:14.668 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:14:14.668 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:14:14.668 -07 000000409 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:14:14.668 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:14:14.668 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:14:14.668 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:14:14.668 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:14:14.668 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:14:14.668 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:14:14.668 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:14:14.668 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:14:14.678 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 5 ms.
17-03-17 23:14:14.678 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:14:14.678 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 5 ms.
17-03-17 23:14:14.678 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:14:14.698 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 23:14:14.698 -07 000000409 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 24 ms.
17-03-17 23:14:14.698 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 23:14:14.698 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 24 ms.
17-03-17 23:14:14.698 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 470 470 226 226 36705 150\n [Camera]
17-03-17 23:14:14.898 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:14:15.368 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 662
17-03-17 23:14:15.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 662
17-03-17 23:14:15.368 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:14:15.368 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:14:15.368 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 23:14:15.368 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 662
17-03-17 23:14:15.368 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 662
17-03-17 23:14:15.368 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:14:15.368 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:14:15.368 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-17 23:14:15.558 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36705 855
17-03-17 23:14:15.708 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1005
17-03-17 23:14:15.748 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 23:14:15.748 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 23:14:15.748 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:14:15.758 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 23:14:15.758 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 23:14:15.758 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:14:15.758 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:14:15.758 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 23:14:15.758 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:14:15.768 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 23:14:15.938 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1231
17-03-17 23:14:15.938 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1231
17-03-17 23:14:15.938 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:14:15.938 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:14:15.938 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start.
17-03-17 23:14:15.938 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1231
17-03-17 23:14:15.938 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1231
17-03-17 23:14:15.938 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:14:16.068 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:14:16.068 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 23:14:16.128 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1423
17-03-17 23:14:16.128 -07 000000551 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:14:16.128 -07 000000610 INF: FPGA: 'CAMDBLSNAP 470 470 226 226 36705 150' command took 2 ms to send, 1425 ms to get response, and 1431 ms overall
17-03-17 23:14:16.128 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:14:16.128 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51806640625, Z-Position -0.167226524858132. ------
17-03-17 23:14:16.138 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:14:16.138 -07 000000482 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17369 mm
17-03-17 23:14:16.138 -07 000000482 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:14:16.138 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:14:16.138 -07 000000429 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 23:14:16.138 -07 000000429 INF: Y Motor: Moving to 72.3626 mm, started at 71.5181 mm, delta = 0.8445 mm
17-03-17 23:14:16.138 -07 000000475 INF: Z Motor: Entering MoveAbsStepped (DAC = 37943, sync = True, waitForSettling = False)
17-03-17 23:14:16.138 -07 000000475 INF: Z Motor: Moving to -0.173692 mm, started at -0.167227 mm, distance = -6.47 um
17-03-17 23:14:16.148 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:14:16.148 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:14:16.148 -07 000000448 INF: FPGA: Recv YRDPOS 146469
17-03-17 23:14:16.158 -07 000000475 INF: FPGA: Xmit ZDACW 37943\n [Z Motor]
17-03-17 23:14:16.158 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 23:14:16.158 -07 000000429 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:14:16.158 -07 000000429 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:14:16.158 -07 000000429 INF: Y Motor: Moving 1351 steps-31
17-03-17 23:14:16.158 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 23:14:16.168 -07 000000541 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:14:16.168 -07 000000475 INF: FPGA: 'ZDACW 37943' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 23:14:16.178 -07 000000429 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:14:16.188 -07 000000475 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:14:16.188 -07 000000448 INF: FPGA: Recv ZDACR 37943
17-03-17 23:14:16.198 -07 000000475 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:14:16.198 -07 000000475 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 23:14:16.338 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 23:14:16.338 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 23:14:16.338 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:14:16.348 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 23:14:16.348 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 23:14:16.368 -07 000000486 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:14:16.368 -07 000000541 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 23:14:16.388 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 73, FrontChillerTemperature: 3.989471,
17-03-17 23:14:16.458 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 23:14:16.458 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 23:14:16.458 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:14:16.458 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 23:14:16.468 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 527 ms.
17-03-17 23:14:16.558 -07 000000475 INF: FPGA: Recv YMVTILE
17-03-17 23:14:16.558 -07 000000429 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 398 ms overall
17-03-17 23:14:16.598 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:14:16.598 -07 000000382 INF: FPGA: Recv YRDPOS 148169
17-03-17 23:14:16.608 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:14:16.608 -07 000000429 INF: Y Motor: Encoder = 148169 = motor step 115757.0 = 72.3481 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:14:16.608 -07 000000429 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 23:14:16.608 -07 000000429 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.845 mm, average velocity = 2.122 mm/sec
17-03-17 23:14:17.048 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:14:17.048 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 72. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1154, R2=1202, Total=2356. Warn if over 250 bubbles per interval.
17-03-17 23:14:17.558 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:14:17.558 -07 000000462 INF: FPGA: Recv YRDPOS 148170
17-03-17 23:14:17.568 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:14:17.568 -07 000000429 INF: Y Motor: Encoder = 148170 = motor step 115757.8 = 72.3486 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:14:17.598 -07 000000429 INF: Y Motor: After move to 72.362610, error = -0.013977, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:14:17.598 -07 000000429 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 23:14:17.598 -07 000000429 INF: Y Motor: Moved to 72.3486 after 1459 ms (table move)
17-03-17 23:14:17.598 -07 000000482 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173692 mm (DAC = 37943)
17-03-17 23:14:17.598 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:17.608 -07 000000415 INF: FPGA: Recv ZSGSRD 36332
17-03-17 23:14:17.608 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 23:14:17.608 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:17.608 -07 000000429 INF: FPGA: Recv ZSGSRD 36330
17-03-17 23:14:17.618 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:14:17.618 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:17.618 -07 000000593 INF: FPGA: Recv ZSGSRD 36325
17-03-17 23:14:17.628 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:17.628 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:17.628 -07 000000429 INF: FPGA: Recv ZSGSRD 36326
17-03-17 23:14:17.638 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:17.638 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:17.638 -07 000000502 INF: FPGA: Recv ZSGSRD 36328
17-03-17 23:14:17.648 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:17.648 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:17.648 -07 000000576 INF: FPGA: Recv ZSGSRD 36326
17-03-17 23:14:17.658 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:17.658 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:17.658 -07 000000561 INF: FPGA: Recv ZSGSRD 36323
17-03-17 23:14:17.668 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:17.668 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:17.668 -07 000000415 INF: FPGA: Recv ZSGSRD 36324
17-03-17 23:14:17.678 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:17.678 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:17.678 -07 000000429 INF: FPGA: Recv ZSGSRD 36325
17-03-17 23:14:17.688 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:17.688 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:17.688 -07 000000593 INF: FPGA: Recv ZSGSRD 36328
17-03-17 23:14:17.698 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:17.698 -07 000000482 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:14:17.698 -07 000000475 INF: FPGA: Recv ZPIEZORD 32524
17-03-17 23:14:17.708 -07 000000482 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:17.708 -07 000000482 INF: Z Motor: Piezo is near 49.5 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.790 V. Piezo Error = -8.4 V.
17-03-17 23:14:17.708 -07 000000482 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.7 um, Read 10 ADC samples: Avg = 36327 (-172.8 uncal um), Error = 0.9 uncal um, Median = 36326 (-172.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36323 (-172.8 uncal um), Max = 36332 (-172.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:14:17.708 -07 000000482 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36327, posNoise = 5, negNoise = 4
17-03-17 23:14:17.708 -07 000000482 INF: Z Motor: After move to -0.173692, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:14:17.708 -07 000000482 INF: Z Motor: Settle wait time = 1462 ms, measure time = 101 ms (allowed 150 ms), total time = 1563 ms
17-03-17 23:14:17.708 -07 000000482 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 23:14:17.758 -07 000000482 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1617 ms
17-03-17 23:14:17.758 -07 000000482 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:14:17.758 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:14:17.758 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:14:17.758 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:14:17.758 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:14:17.758 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:14:17.758 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:14:17.768 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:14:17.768 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:14:17.768 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:14:17.768 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:14:17.768 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 23:14:17.768 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 23:14:17.778 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:14:17.828 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:14:18.018 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:14:18.018 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:14:18.028 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:14:18.028 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) start.
17-03-17 23:14:18.058 -07 000000382 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:14:18.058 -07 000000551 INF: FPGA: Recv CAMSNAP
17-03-17 23:14:18.058 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 287 ms overall
17-03-17 23:14:18.138 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 23:14:18.138 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:14:18.138 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 23:14:18.138 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 23:14:18.168 -07 000000409 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:14:18.168 -07 000000462 INF: Autofocus start
17-03-17 23:14:18.168 -07 000000462 INF: MeasureProfile start
17-03-17 23:14:18.168 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:14:18.178 -07 000000409 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:14:18.178 -07 000000409 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:14:18.178 -07 000000462 INF: MeasureProfile done
17-03-17 23:14:18.178 -07 000000462 INF: X=16  Z correction [um]=0.01042744
17-03-17 23:14:18.178 -07 000000462 INF: Autofocus finished
17-03-17 23:14:18.378 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:14:18.378 -07 000000409 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:14:18.378 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.3486328125, Z-position -0.173695706484885. ----------
17-03-17 23:14:18.378 -07 000000610 INF: Cycle	73	Tile	16	Exposure Settings		A	470	G	226	T	226	C	470
17-03-17 23:14:18.388 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36458, sync = True, waitForSettling = True)
17-03-17 23:14:18.388 -07 000000610 INF: Z Motor: Moving to -0.166894 mm, started at -0.173696 mm, distance = 6.80 um
17-03-17 23:14:18.388 -07 000000610 INF: FPGA: Xmit ZDACW 36458\n [Z Motor]
17-03-17 23:14:18.388 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 23:14:18.398 -07 000000610 INF: FPGA: 'ZDACW 36458' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:14:18.398 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:14:18.398 -07 000000382 INF: FPGA: Recv ZDACR 36458
17-03-17 23:14:18.408 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:18.408 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:14:18.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:18.558 -07 000000501 INF: FPGA: Recv ZSGSRD 35276
17-03-17 23:14:18.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:18.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:18.568 -07 000000576 INF: FPGA: Recv ZSGSRD 35270
17-03-17 23:14:18.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:18.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:18.578 -07 000000502 INF: FPGA: Recv ZSGSRD 35266
17-03-17 23:14:18.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:18.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:18.588 -07 000000462 INF: FPGA: Recv ZSGSRD 35263
17-03-17 23:14:18.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:18.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:18.598 -07 000000409 INF: FPGA: Recv ZSGSRD 35278
17-03-17 23:14:18.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:18.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:18.608 -07 000000551 INF: FPGA: Recv ZSGSRD 35275
17-03-17 23:14:18.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:18.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:18.618 -07 000000576 INF: FPGA: Recv ZSGSRD 35271
17-03-17 23:14:18.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:18.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:18.628 -07 000000618 INF: FPGA: Recv ZSGSRD 35268
17-03-17 23:14:18.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:18.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:18.638 -07 000000547 INF: FPGA: Recv ZSGSRD 35267
17-03-17 23:14:18.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:18.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:18.648 -07 000000502 INF: FPGA: Recv ZSGSRD 35268
17-03-17 23:14:18.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:18.658 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:14:18.658 -07 000000482 INF: FPGA: Recv ZPIEZORD 31104
17-03-17 23:14:18.668 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:18.668 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.563 V. Piezo Error = -9.2 V.
17-03-17 23:14:18.668 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.9 um, Read 10 ADC samples: Avg = 35270 (-166.0 uncal um), Error = 0.9 uncal um, Median = 35269 (-166.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35263 (-166.0 uncal um), Max = 35278 (-166.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 23:14:18.668 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35270, posNoise = 8, negNoise = 7
17-03-17 23:14:18.668 -07 000000610 INF: Z Motor: After move to -0.166894, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:14:18.668 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 23:14:18.668 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:14:18.668 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:14:18.668 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:14:18.668 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:14:18.668 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:14:18.668 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:14:18.668 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:14:18.668 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:14:18.668 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 23:14:18.668 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:14:18.668 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:14:18.668 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:14:18.678 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:14:18.678 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:14:18.678 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:14:18.678 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:14:18.688 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 23:14:18.688 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 23:14:18.688 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 23:14:18.688 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:14:18.688 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 470 470 226 226 36635 150\n [Camera]
17-03-17 23:14:18.888 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:14:19.358 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 662
17-03-17 23:14:19.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 662
17-03-17 23:14:19.368 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:14:19.368 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 662
17-03-17 23:14:19.368 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 662
17-03-17 23:14:19.368 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:14:19.368 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:14:19.368 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 23:14:19.368 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:14:19.378 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 23:14:19.558 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36635 855
17-03-17 23:14:19.708 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1005
17-03-17 23:14:19.768 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 23:14:19.768 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 23:14:19.768 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 23:14:19.768 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:14:19.768 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 23:14:19.768 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:14:19.768 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:14:19.768 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:14:19.768 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 23:14:19.778 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 23:14:19.928 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1231
17-03-17 23:14:19.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1231
17-03-17 23:14:19.928 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:14:19.938 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1231
17-03-17 23:14:19.938 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1231
17-03-17 23:14:19.938 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:14:20.048 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:14:20.058 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-17 23:14:20.058 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:14:20.058 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 23:14:20.118 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1424
17-03-17 23:14:20.128 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:14:20.128 -07 000000610 INF: FPGA: 'CAMDBLSNAP 470 470 226 226 36635 150' command took 2 ms to send, 1420 ms to get response, and 1430 ms overall
17-03-17 23:14:20.128 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:14:20.128 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.3486328125, Z-Position -0.166905314251044. ------
17-03-17 23:14:20.128 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:14:20.128 -07 000000627 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17345 mm
17-03-17 23:14:20.128 -07 000000627 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:14:20.128 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 23:14:20.128 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 37889, sync = True, waitForSettling = False)
17-03-17 23:14:20.128 -07 000000551 INF: Z Motor: Moving to -0.173445 mm, started at -0.166905 mm, distance = -6.54 um
17-03-17 23:14:20.128 -07 000000618 INF: Y Motor: Moving to 73.1926 mm, started at 72.3486 mm, delta = 0.8440 mm
17-03-17 23:14:20.128 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:14:20.138 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:14:20.138 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:14:20.138 -07 000000501 INF: FPGA: Recv YRDPOS 148170
17-03-17 23:14:20.148 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 23:14:20.148 -07 000000618 INF: Y Motor: Encoder = 148170 = motor step 115757.8 = 72.3486 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:14:20.148 -07 000000478 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:14:20.148 -07 000000618 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:14:20.148 -07 000000618 INF: Y Motor: Moving 1350 steps-30
17-03-17 23:14:20.158 -07 000000551 INF: FPGA: Xmit ZDACW 37889\n [Z Motor]
17-03-17 23:14:20.158 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 23:14:20.168 -07 000000551 INF: FPGA: 'ZDACW 37889' command took 0 ms to send, 0 ms to get response, and 31 ms overall
17-03-17 23:14:20.168 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:14:20.178 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:14:20.178 -07 000000547 INF: FPGA: Recv ZDACR 37889
17-03-17 23:14:20.188 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:14:20.188 -07 000000551 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 23:14:20.348 -07 000000623 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:14:20.348 -07 000000478 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 214 ms overall
17-03-17 23:14:20.438 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 23:14:20.438 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 23:14:20.438 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:14:20.438 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:14:20.438 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 23:14:20.438 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 23:14:20.438 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:14:20.448 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:14:20.448 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 512 ms.
17-03-17 23:14:20.448 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 512 ms.
17-03-17 23:14:20.538 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 23:14:20.538 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 23:14:20.578 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:14:20.588 -07 000000623 INF: FPGA: Recv YRDPOS 149862
17-03-17 23:14:20.588 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 23:14:20.588 -07 000000618 INF: Y Motor: Encoder = 149862 = motor step 117079.7 = 73.1748 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:14:20.588 -07 000000618 INF: Y Motor: Position error before settling (table move) = -36 encoder counts (-0.018 mm)
17-03-17 23:14:20.588 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.126 mm/sec
17-03-17 23:14:21.538 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:14:21.538 -07 000000475 INF: FPGA: Recv YRDPOS 149862
17-03-17 23:14:21.548 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:14:21.548 -07 000000618 INF: Y Motor: Encoder = 149862 = motor step 117079.7 = 73.1748 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:14:21.568 -07 000000618 INF: Y Motor: After move to 73.192604, error = -0.017799, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:14:21.568 -07 000000618 INF: Y Motor: Position error after settling (table move) = -36 encoder counts (-0.018 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:14:21.568 -07 000000618 INF: Y Motor: Moved to 73.1748 after 1438 ms (table move)
17-03-17 23:14:21.568 -07 000000627 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173445 mm (DAC = 37889)
17-03-17 23:14:21.568 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:21.578 -07 000000462 INF: FPGA: Recv ZSGSRD 36285
17-03-17 23:14:21.578 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 23:14:21.578 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:21.578 -07 000000448 INF: FPGA: Recv ZSGSRD 36290
17-03-17 23:14:21.588 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:14:21.588 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:21.588 -07 000000482 INF: FPGA: Recv ZSGSRD 36291
17-03-17 23:14:21.598 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:21.598 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:21.598 -07 000000593 INF: FPGA: Recv ZSGSRD 36293
17-03-17 23:14:21.608 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:21.608 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:21.608 -07 000000623 INF: FPGA: Recv ZSGSRD 36290
17-03-17 23:14:21.618 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:21.618 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:21.618 -07 000000382 INF: FPGA: Recv ZSGSRD 36293
17-03-17 23:14:21.628 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:21.628 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:21.628 -07 000000551 INF: FPGA: Recv ZSGSRD 36293
17-03-17 23:14:21.638 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:21.638 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:21.638 -07 000000547 INF: FPGA: Recv ZSGSRD 36287
17-03-17 23:14:21.648 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:21.648 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:21.648 -07 000000409 INF: FPGA: Recv ZSGSRD 36287
17-03-17 23:14:21.658 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:21.658 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:21.658 -07 000000429 INF: FPGA: Recv ZSGSRD 36284
17-03-17 23:14:21.668 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:21.668 -07 000000627 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:14:21.668 -07 000000382 INF: FPGA: Recv ZPIEZORD 32449
17-03-17 23:14:21.678 -07 000000627 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:21.678 -07 000000627 INF: Z Motor: Piezo is near 49.3 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.781 V. Piezo Error = -8.5 V.
17-03-17 23:14:21.678 -07 000000627 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.4 um, Read 10 ADC samples: Avg = 36289 (-172.6 uncal um), Error = 0.9 uncal um, Median = 36290 (-172.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36284 (-172.5 uncal um), Max = 36293 (-172.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:14:21.678 -07 000000627 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36289, posNoise = 4, negNoise = 5
17-03-17 23:14:21.678 -07 000000627 INF: Z Motor: After move to -0.173445, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:14:21.678 -07 000000627 INF: Z Motor: Settle wait time = 1441 ms, measure time = 101 ms (allowed 150 ms), total time = 1542 ms
17-03-17 23:14:21.678 -07 000000627 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 23:14:21.728 -07 000000627 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1594 ms
17-03-17 23:14:21.728 -07 000000627 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:14:21.728 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:14:21.728 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:14:21.728 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:14:21.728 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:14:21.728 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:14:21.728 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:14:21.728 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:14:21.728 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:14:21.738 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:14:21.738 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:14:21.748 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 23:14:21.748 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 23:14:21.768 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:14:21.768 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 73, FrontChillerTemperature: 3.975845,
17-03-17 23:14:21.808 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:14:22.008 -07 000000486 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:14:22.008 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:14:22.008 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:14:22.008 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) start.
17-03-17 23:14:22.048 -07 000000448 INF: FPGA: Recv @CAMSNAP 281
17-03-17 23:14:22.048 -07 000000482 INF: FPGA: Recv CAMSNAP
17-03-17 23:14:22.048 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 302 ms overall
17-03-17 23:14:22.048 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:14:22.128 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 23:14:22.128 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:14:22.128 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 23:14:22.128 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 23:14:22.128 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 72. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1154, R2=1202, Total=2356. Warn if over 250 bubbles per interval.
17-03-17 23:14:22.148 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:14:22.148 -07 000000486 INF: Autofocus start
17-03-17 23:14:22.148 -07 000000486 INF: MeasureProfile start
17-03-17 23:14:22.148 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:14:22.158 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:14:22.158 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:14:22.158 -07 000000486 INF: MeasureProfile done
17-03-17 23:14:22.158 -07 000000486 INF: X=-32  Z correction [um]=-0.2344
17-03-17 23:14:22.158 -07 000000486 INF: Autofocus finished
17-03-17 23:14:22.358 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:14:22.358 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:14:22.358 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.1748046875, Z-position -0.173451586423498. ----------
17-03-17 23:14:22.358 -07 000000610 INF: Cycle	73	Tile	17	Exposure Settings		A	470	G	226	T	226	C	470
17-03-17 23:14:22.368 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36351, sync = True, waitForSettling = True)
17-03-17 23:14:22.368 -07 000000610 INF: Z Motor: Moving to -0.166404 mm, started at -0.173452 mm, distance = 7.05 um
17-03-17 23:14:22.368 -07 000000610 INF: FPGA: Xmit ZDACW 36351\n [Z Motor]
17-03-17 23:14:22.368 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 23:14:22.378 -07 000000610 INF: FPGA: 'ZDACW 36351' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:14:22.378 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:14:22.378 -07 000000478 INF: FPGA: Recv ZDACR 36351
17-03-17 23:14:22.388 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:22.388 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:14:22.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:22.538 -07 000000382 INF: FPGA: Recv ZSGSRD 35194
17-03-17 23:14:22.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:14:22.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:22.548 -07 000000448 INF: FPGA: Recv ZSGSRD 35192
17-03-17 23:14:22.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:22.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:22.558 -07 000000618 INF: FPGA: Recv ZSGSRD 35197
17-03-17 23:14:22.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:22.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:22.568 -07 000000462 INF: FPGA: Recv ZSGSRD 35191
17-03-17 23:14:22.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:22.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:22.578 -07 000000475 INF: FPGA: Recv ZSGSRD 35192
17-03-17 23:14:22.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:22.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:22.588 -07 000000551 INF: FPGA: Recv ZSGSRD 35192
17-03-17 23:14:22.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:22.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:22.598 -07 000000593 INF: FPGA: Recv ZSGSRD 35197
17-03-17 23:14:22.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:22.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:22.608 -07 000000547 INF: FPGA: Recv ZSGSRD 35195
17-03-17 23:14:22.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:22.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:22.618 -07 000000475 INF: FPGA: Recv ZSGSRD 35192
17-03-17 23:14:22.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:22.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:22.628 -07 000000551 INF: FPGA: Recv ZSGSRD 35198
17-03-17 23:14:22.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:22.638 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:14:22.638 -07 000000482 INF: FPGA: Recv ZPIEZORD 31016
17-03-17 23:14:22.648 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:22.648 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.547 V. Piezo Error = -9.2 V.
17-03-17 23:14:22.648 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.4 um, Read 10 ADC samples: Avg = 35194 (-165.6 uncal um), Error = 0.9 uncal um, Median = 35193 (-165.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35191 (-165.5 uncal um), Max = 35198 (-165.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 23:14:22.648 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35194, posNoise = 4, negNoise = 3
17-03-17 23:14:22.648 -07 000000610 INF: Z Motor: After move to -0.166404, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:14:22.648 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 23:14:22.648 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:14:22.648 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:14:22.648 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:14:22.648 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:14:22.648 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:14:22.648 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:14:22.648 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:14:22.648 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:14:22.648 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:14:22.648 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:14:22.648 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:14:22.648 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:14:22.658 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 23:14:22.658 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:14:22.658 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:14:22.658 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:14:22.668 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 23:14:22.668 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 23:14:22.668 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 23:14:22.668 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:14:22.668 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 470 470 226 226 36528 150\n [Camera]
17-03-17 23:14:22.868 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:14:23.338 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 662
17-03-17 23:14:23.338 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 662
17-03-17 23:14:23.338 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:14:23.338 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 662
17-03-17 23:14:23.338 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 662
17-03-17 23:14:23.338 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:14:23.338 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:14:23.338 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 23:14:23.348 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:14:23.348 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 23:14:23.528 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36528 855
17-03-17 23:14:23.678 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1005
17-03-17 23:14:23.718 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 23:14:23.718 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 23:14:23.718 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:14:23.718 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 23:14:23.718 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 23:14:23.718 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:14:23.728 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 23:14:23.728 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 23:14:23.728 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:14:23.728 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 23:14:23.908 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1231
17-03-17 23:14:23.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1231
17-03-17 23:14:23.908 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:14:23.908 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1231
17-03-17 23:14:23.908 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1231
17-03-17 23:14:23.908 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:14:23.918 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:14:23.918 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 23:14:23.918 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:14:23.918 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2602438304, 0x0, 418435064) start.
17-03-17 23:14:24.098 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP 1424
17-03-17 23:14:24.098 -07 000000448 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:14:24.098 -07 000000610 INF: FPGA: 'CAMDBLSNAP 470 470 226 226 36528 150' command took 2 ms to send, 1423 ms to get response, and 1430 ms overall
17-03-17 23:14:24.098 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:14:24.098 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.1748046875, Z-Position -0.16641707412827. ------
17-03-17 23:14:24.098 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:14:24.098 -07 000000593 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17281 mm
17-03-17 23:14:24.098 -07 000000593 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:14:24.108 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:14:24.108 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 4 ms overall
17-03-17 23:14:24.108 -07 000000475 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:14:24.108 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 23:14:24.108 -07 000000462 INF: Y Motor: Moving to 74.0226 mm, started at 73.1748 mm, delta = 0.8478 mm
17-03-17 23:14:24.108 -07 000000429 INF: Z Motor: Entering MoveAbsStepped (DAC = 37751, sync = True, waitForSettling = False)
17-03-17 23:14:24.108 -07 000000429 INF: Z Motor: Moving to -0.172813 mm, started at -0.166417 mm, distance = -6.40 um
17-03-17 23:14:24.118 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:14:24.118 -07 000000551 INF: FPGA: Recv YRDPOS 149863
17-03-17 23:14:24.128 -07 000000429 INF: FPGA: Xmit ZDACW 37751\n [Z Motor]
17-03-17 23:14:24.128 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 23:14:24.128 -07 000000462 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:14:24.128 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 23:14:24.128 -07 000000462 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:14:24.128 -07 000000462 INF: Y Motor: Moving 1356 steps-36
17-03-17 23:14:24.138 -07 000000429 INF: FPGA: 'ZDACW 37751' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 23:14:24.138 -07 000000429 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:14:24.138 -07 000000561 INF: FPGA: Recv ZDACR 37751
17-03-17 23:14:24.148 -07 000000429 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:24.148 -07 000000429 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-17 23:14:24.148 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:14:24.308 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:14:24.308 -07 000000475 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 23:14:24.318 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2602438304, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 23:14:24.318 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 23:14:24.318 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:14:24.318 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 23:14:24.318 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 23:14:24.318 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:14:24.318 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:14:24.318 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:14:24.318 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-17 23:14:24.328 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-17 23:14:24.528 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 23:14:24.528 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 397 ms overall
17-03-17 23:14:24.558 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:14:24.558 -07 000000551 INF: FPGA: Recv YRDPOS 151566
17-03-17 23:14:24.568 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:14:24.568 -07 000000462 INF: Y Motor: Encoder = 151566 = motor step 118410.9 = 74.0068 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:14:24.568 -07 000000462 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm)
17-03-17 23:14:24.568 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.848 mm, average velocity = 2.136 mm/sec
17-03-17 23:14:25.518 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:14:25.518 -07 000000618 INF: FPGA: Recv YRDPOS 151567
17-03-17 23:14:25.528 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:14:25.528 -07 000000462 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:14:25.538 -07 000000462 INF: Y Motor: After move to 74.022606, error = -0.015282, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:14:25.538 -07 000000462 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 23:14:25.538 -07 000000462 INF: Y Motor: Moved to 74.0073 after 1435 ms (table move)
17-03-17 23:14:25.548 -07 000000593 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172813 mm (DAC = 37751)
17-03-17 23:14:25.548 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:25.548 -07 000000409 INF: FPGA: Recv ZSGSRD 36194
17-03-17 23:14:25.558 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:14:25.558 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:25.558 -07 000000541 INF: FPGA: Recv ZSGSRD 36185
17-03-17 23:14:25.568 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:25.568 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:25.568 -07 000000551 INF: FPGA: Recv ZSGSRD 36193
17-03-17 23:14:25.578 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:25.578 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:25.578 -07 000000618 INF: FPGA: Recv ZSGSRD 36193
17-03-17 23:14:25.588 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:25.588 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:25.588 -07 000000623 INF: FPGA: Recv ZSGSRD 36190
17-03-17 23:14:25.598 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:25.598 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:25.598 -07 000000448 INF: FPGA: Recv ZSGSRD 36194
17-03-17 23:14:25.608 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:25.608 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:25.608 -07 000000415 INF: FPGA: Recv ZSGSRD 36192
17-03-17 23:14:25.618 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:25.618 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:25.618 -07 000000462 INF: FPGA: Recv ZSGSRD 36191
17-03-17 23:14:25.628 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:25.628 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:25.628 -07 000000409 INF: FPGA: Recv ZSGSRD 36188
17-03-17 23:14:25.638 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:25.638 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:25.638 -07 000000561 INF: FPGA: Recv ZSGSRD 36188
17-03-17 23:14:25.648 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:25.648 -07 000000593 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:14:25.648 -07 000000478 INF: FPGA: Recv ZPIEZORD 32343
17-03-17 23:14:25.658 -07 000000593 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:25.658 -07 000000593 INF: Z Motor: Piezo is near 49.1 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.760 V. Piezo Error = -8.5 V.
17-03-17 23:14:25.658 -07 000000593 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.8 um, Read 10 ADC samples: Avg = 36191 (-171.9 uncal um), Error = 0.9 uncal um, Median = 36192 (-171.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36185 (-171.9 uncal um), Max = 36194 (-172.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:14:25.658 -07 000000593 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36191, posNoise = 3, negNoise = 6
17-03-17 23:14:25.658 -07 000000593 INF: Z Motor: After move to -0.172813, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:14:25.658 -07 000000593 INF: Z Motor: Settle wait time = 1439 ms, measure time = 107 ms (allowed 150 ms), total time = 1546 ms
17-03-17 23:14:25.658 -07 000000593 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 23:14:25.708 -07 000000593 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1601 ms
17-03-17 23:14:25.708 -07 000000593 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:14:25.708 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:14:25.708 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:14:25.708 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:14:25.708 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:14:25.708 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:14:25.708 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:14:25.708 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:14:25.708 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:14:25.718 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:14:25.718 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:14:25.718 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 23:14:25.718 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 23:14:25.728 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:14:25.768 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:14:25.968 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:14:25.968 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:14:25.968 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:14:26.078 -07 000000415 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:14:26.078 -07 000000415 INF: FPGA: Recv CAMSNAP
17-03-17 23:14:26.078 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 344 ms to get response, and 353 ms overall
17-03-17 23:14:26.078 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 674752456, 0x0, 559484976) start.
17-03-17 23:14:26.198 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 674752456, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 23:14:26.198 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:14:26.198 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:14:26.198 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 224 ms.
17-03-17 23:14:26.278 -07 000000409 INF: Autofocus start
17-03-17 23:14:26.278 -07 000000409 INF: MeasureProfile start
17-03-17 23:14:26.278 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:14:26.288 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:14:26.288 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:14:26.288 -07 000000448 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:14:26.288 -07 000000409 INF: MeasureProfile done
17-03-17 23:14:26.288 -07 000000409 INF: X=16  Z correction [um]=0.01042744
17-03-17 23:14:26.288 -07 000000409 INF: Autofocus finished
17-03-17 23:14:26.488 -07 000000475 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:14:26.488 -07 000000448 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 205 ms overall
17-03-17 23:14:26.498 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00732421875, Z-position -0.172822013633606. ----------
17-03-17 23:14:26.498 -07 000000610 INF: Cycle	73	Tile	18	Exposure Settings		A	470	G	226	T	226	C	470
17-03-17 23:14:26.498 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36266, sync = True, waitForSettling = True)
17-03-17 23:14:26.498 -07 000000610 INF: Z Motor: Moving to -0.166015 mm, started at -0.172822 mm, distance = 6.81 um
17-03-17 23:14:26.498 -07 000000610 INF: FPGA: Xmit ZDACW 36266\n [Z Motor]
17-03-17 23:14:26.498 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 23:14:26.508 -07 000000610 INF: FPGA: 'ZDACW 36266' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:14:26.508 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:14:26.508 -07 000000462 INF: FPGA: Recv ZDACR 36266
17-03-17 23:14:26.518 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:26.518 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:14:26.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:26.668 -07 000000382 INF: FPGA: Recv ZSGSRD 35133
17-03-17 23:14:26.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:14:26.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:26.678 -07 000000593 INF: FPGA: Recv ZSGSRD 35135
17-03-17 23:14:26.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:26.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:26.688 -07 000000547 INF: FPGA: Recv ZSGSRD 35135
17-03-17 23:14:26.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:26.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:26.698 -07 000000593 INF: FPGA: Recv ZSGSRD 35129
17-03-17 23:14:26.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:26.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:26.708 -07 000000551 INF: FPGA: Recv ZSGSRD 35129
17-03-17 23:14:26.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:26.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:26.718 -07 000000409 INF: FPGA: Recv ZSGSRD 35136
17-03-17 23:14:26.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:26.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:26.728 -07 000000561 INF: FPGA: Recv ZSGSRD 35138
17-03-17 23:14:26.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:26.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:26.738 -07 000000482 INF: FPGA: Recv ZSGSRD 35138
17-03-17 23:14:26.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:26.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:26.748 -07 000000486 INF: FPGA: Recv ZSGSRD 35129
17-03-17 23:14:26.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:26.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:26.758 -07 000000551 INF: FPGA: Recv ZSGSRD 35132
17-03-17 23:14:26.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:26.768 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:14:26.768 -07 000000623 INF: FPGA: Recv ZPIEZORD 30980
17-03-17 23:14:26.778 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:26.778 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.3 V, since DAC is at 5.534 V. Piezo Error = -9.2 V.
17-03-17 23:14:26.778 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.0 um, Read 10 ADC samples: Avg = 35133 (-165.2 uncal um), Error = 0.9 uncal um, Median = 35134 (-165.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35129 (-165.1 uncal um), Max = 35138 (-165.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:14:26.778 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35133, posNoise = 5, negNoise = 4
17-03-17 23:14:26.778 -07 000000610 INF: Z Motor: After move to -0.166015, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:14:26.778 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 23:14:26.778 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:14:26.778 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:14:26.778 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:14:26.778 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:14:26.778 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:14:26.778 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:14:26.778 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:14:26.778 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:14:26.778 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:14:26.778 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:14:26.778 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:14:26.778 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:14:26.788 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:14:26.788 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:14:26.788 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:14:26.788 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:14:26.798 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 17 ms.
17-03-17 23:14:26.798 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 23:14:26.798 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 23:14:26.798 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 23:14:26.808 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 470 470 226 226 36443 150\n [Camera]
17-03-17 23:14:26.998 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:14:27.048 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:14:27.048 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 72. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1154, R2=1202, Total=2356. Warn if over 250 bubbles per interval.
17-03-17 23:14:27.138 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 73, FrontChillerTemperature: 3.956714,
17-03-17 23:14:27.478 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 662
17-03-17 23:14:27.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 662
17-03-17 23:14:27.478 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:14:27.478 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 662
17-03-17 23:14:27.478 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 662
17-03-17 23:14:27.478 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:14:27.478 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:14:27.478 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 583729424, 0x0, 391868352) start.
17-03-17 23:14:27.478 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:14:27.478 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 23:14:27.668 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36443 855
17-03-17 23:14:27.818 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1005
17-03-17 23:14:27.868 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 583729424, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 23:14:27.878 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 23:14:27.878 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:14:27.878 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 23:14:27.878 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 23:14:27.878 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:14:27.878 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:14:27.878 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 23:14:27.878 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:14:27.888 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 23:14:28.038 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1231
17-03-17 23:14:28.038 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1231
17-03-17 23:14:28.038 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:14:28.048 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1231
17-03-17 23:14:28.048 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1231
17-03-17 23:14:28.048 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:14:28.158 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:14:28.158 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-17 23:14:28.158 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:14:28.158 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-17 23:14:28.238 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1424
17-03-17 23:14:28.238 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:14:28.238 -07 000000610 INF: FPGA: 'CAMDBLSNAP 470 470 226 226 36443 150' command took 4 ms to send, 1420 ms to get response, and 1431 ms overall
17-03-17 23:14:28.238 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:14:28.238 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00732421875, Z-Position -0.166025197187623. ------
17-03-17 23:14:28.238 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:14:28.238 -07 000000482 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17238 mm
17-03-17 23:14:28.238 -07 000000482 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:14:28.248 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 23:14:28.248 -07 000000576 INF: Y Motor: Moving to 74.8526 mm, started at 74.0073 mm, delta = 0.8453 mm
17-03-17 23:14:28.248 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:14:28.248 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:14:28.248 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:14:28.248 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 37656, sync = True, waitForSettling = False)
17-03-17 23:14:28.248 -07 000000623 INF: Z Motor: Moving to -0.172378 mm, started at -0.166025 mm, distance = -6.35 um
17-03-17 23:14:28.248 -07 000000475 INF: FPGA: Recv YRDPOS 151567
17-03-17 23:14:28.258 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:28.258 -07 000000576 INF: Y Motor: Encoder = 151567 = motor step 118411.7 = 74.0073 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:14:28.258 -07 000000576 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:14:28.258 -07 000000576 INF: Y Motor: Moving 1352 steps-32
17-03-17 23:14:28.258 -07 000000623 INF: FPGA: Xmit ZDACW 37656\n [Z Motor]
17-03-17 23:14:28.258 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 23:14:28.268 -07 000000551 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:14:28.268 -07 000000623 INF: FPGA: 'ZDACW 37656' command took 1 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 23:14:28.278 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:14:28.288 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:14:28.288 -07 000000486 INF: FPGA: Recv ZDACR 37656
17-03-17 23:14:28.298 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 23:14:28.298 -07 000000623 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 23:14:28.468 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:14:28.468 -07 000000551 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-17 23:14:28.558 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 23:14:28.558 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 23:14:28.558 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:14:28.558 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 23:14:28.558 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 23:14:28.558 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:14:28.558 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:14:28.558 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:14:28.558 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 520 ms.
17-03-17 23:14:28.568 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 522 ms.
17-03-17 23:14:28.648 -07 000000415 INF: FPGA: Recv YMVTILE
17-03-17 23:14:28.648 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 367 ms to get response, and 397 ms overall
17-03-17 23:14:28.678 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:14:28.678 -07 000000618 INF: FPGA: Recv YRDPOS 153253
17-03-17 23:14:28.688 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:14:28.688 -07 000000576 INF: Y Motor: Encoder = 153253 = motor step 119728.9 = 74.8306 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:14:28.688 -07 000000576 INF: Y Motor: Position error before settling (table move) = -45 encoder counts (-0.022 mm)
17-03-17 23:14:28.688 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.129 mm/sec
17-03-17 23:14:29.638 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:14:29.638 -07 000000478 INF: FPGA: Recv YRDPOS 153254
17-03-17 23:14:29.648 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:14:29.648 -07 000000576 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:14:29.658 -07 000000576 INF: Y Motor: After move to 74.852608, error = -0.021553, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:14:29.658 -07 000000576 INF: Y Motor: Position error after settling (table move) = -44 encoder counts (-0.021 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 23:14:29.658 -07 000000576 INF: Y Motor: Moved to 74.8311 after 1417 ms (table move)
17-03-17 23:14:29.668 -07 000000482 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172378 mm (DAC = 37656)
17-03-17 23:14:29.668 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:29.668 -07 000000541 INF: FPGA: Recv ZSGSRD 36131
17-03-17 23:14:29.678 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:14:29.678 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:29.678 -07 000000593 INF: FPGA: Recv ZSGSRD 36119
17-03-17 23:14:29.688 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:29.688 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:29.688 -07 000000627 INF: FPGA: Recv ZSGSRD 36120
17-03-17 23:14:29.698 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:29.698 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:29.698 -07 000000478 INF: FPGA: Recv ZSGSRD 36124
17-03-17 23:14:29.708 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:29.708 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:29.708 -07 000000502 INF: FPGA: Recv ZSGSRD 36125
17-03-17 23:14:29.718 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:29.718 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:29.718 -07 000000475 INF: FPGA: Recv ZSGSRD 36128
17-03-17 23:14:29.728 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:29.728 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:29.728 -07 000000429 INF: FPGA: Recv ZSGSRD 36130
17-03-17 23:14:29.738 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:29.738 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:29.738 -07 000000409 INF: FPGA: Recv ZSGSRD 36119
17-03-17 23:14:29.748 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:29.748 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:29.748 -07 000000448 INF: FPGA: Recv ZSGSRD 36116
17-03-17 23:14:29.758 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:29.758 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:29.758 -07 000000576 INF: FPGA: Recv ZSGSRD 36121
17-03-17 23:14:29.768 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:29.768 -07 000000482 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:14:29.768 -07 000000541 INF: FPGA: Recv ZPIEZORD 32279
17-03-17 23:14:29.778 -07 000000482 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:29.778 -07 000000482 INF: Z Motor: Piezo is near 49.0 V (nominally 0 to 100 V), expect near 57.5 V, since DAC is at 5.746 V. Piezo Error = -8.5 V.
17-03-17 23:14:29.778 -07 000000482 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.4 um, Read 10 ADC samples: Avg = 36123 (-171.5 uncal um), Error = 0.9 uncal um, Median = 36122 (-171.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36116 (-171.5 uncal um), Max = 36131 (-171.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 23:14:29.778 -07 000000482 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36123, posNoise = 8, negNoise = 7
17-03-17 23:14:29.778 -07 000000482 INF: Z Motor: After move to -0.172378, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:14:29.778 -07 000000482 INF: Z Motor: Settle wait time = 1420 ms, measure time = 109 ms (allowed 150 ms), total time = 1529 ms
17-03-17 23:14:29.778 -07 000000482 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 23:14:29.828 -07 000000482 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1582 ms
17-03-17 23:14:29.828 -07 000000482 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:14:29.828 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:14:29.828 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:14:29.828 -07 000000409 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:14:29.828 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:14:29.828 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:14:29.828 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:14:29.828 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:14:29.828 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:14:29.838 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 23:14:29.838 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:14:29.848 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 23:14:29.848 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 23:14:29.848 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:14:29.898 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:14:30.098 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:14:30.098 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:14:30.098 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:14:30.098 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 596199184, 0x0, 559484976) start.
17-03-17 23:14:30.138 -07 000000448 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:14:30.138 -07 000000409 INF: FPGA: Recv CAMSNAP
17-03-17 23:14:30.138 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 23:14:30.208 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 596199184, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 23:14:30.208 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:14:30.208 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:14:30.218 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 23:14:30.238 -07 000000415 INF: Autofocus start
17-03-17 23:14:30.238 -07 000000415 INF: MeasureProfile start
17-03-17 23:14:30.238 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:14:30.238 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:14:30.248 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:14:30.248 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:14:30.248 -07 000000415 INF: MeasureProfile done
17-03-17 23:14:30.248 -07 000000415 INF: X=32  Z correction [um]=0.09220707
17-03-17 23:14:30.248 -07 000000415 INF: Autofocus finished
17-03-17 23:14:30.448 -07 000000593 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:14:30.448 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:14:30.448 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.8310546875, Z-position -0.172385167207966. ----------
17-03-17 23:14:30.448 -07 000000610 INF: Cycle	73	Tile	19	Exposure Settings		A	470	G	226	T	226	C	470
17-03-17 23:14:30.458 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36188, sync = True, waitForSettling = True)
17-03-17 23:14:30.458 -07 000000610 INF: Z Motor: Moving to -0.165658 mm, started at -0.172385 mm, distance = 6.73 um
17-03-17 23:14:30.458 -07 000000610 INF: FPGA: Xmit ZDACW 36188\n [Z Motor]
17-03-17 23:14:30.458 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 23:14:30.468 -07 000000610 INF: FPGA: 'ZDACW 36188' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:14:30.468 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:14:30.468 -07 000000478 INF: FPGA: Recv ZDACR 36188
17-03-17 23:14:30.478 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:30.478 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:14:30.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:30.628 -07 000000502 INF: FPGA: Recv ZSGSRD 35075
17-03-17 23:14:30.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:30.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:30.638 -07 000000429 INF: FPGA: Recv ZSGSRD 35078
17-03-17 23:14:30.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:30.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:30.648 -07 000000618 INF: FPGA: Recv ZSGSRD 35078
17-03-17 23:14:30.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:30.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:30.658 -07 000000475 INF: FPGA: Recv ZSGSRD 35072
17-03-17 23:14:30.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:30.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:30.668 -07 000000627 INF: FPGA: Recv ZSGSRD 35080
17-03-17 23:14:30.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:30.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:30.678 -07 000000486 INF: FPGA: Recv ZSGSRD 35081
17-03-17 23:14:30.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:30.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:30.688 -07 000000576 INF: FPGA: Recv ZSGSRD 35075
17-03-17 23:14:30.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:30.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:30.698 -07 000000547 INF: FPGA: Recv ZSGSRD 35077
17-03-17 23:14:30.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:30.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:30.708 -07 000000462 INF: FPGA: Recv ZSGSRD 35075
17-03-17 23:14:30.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:30.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:30.718 -07 000000627 INF: FPGA: Recv ZSGSRD 35077
17-03-17 23:14:30.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:30.728 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:14:30.728 -07 000000462 INF: FPGA: Recv ZPIEZORD 30884
17-03-17 23:14:30.738 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:30.738 -07 000000610 INF: Z Motor: Piezo is near 46.0 V (nominally 0 to 100 V), expect near 55.2 V, since DAC is at 5.522 V. Piezo Error = -9.2 V.
17-03-17 23:14:30.738 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.7 um, Read 10 ADC samples: Avg = 35077 (-164.8 uncal um), Error = 0.9 uncal um, Median = 35077 (-164.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35072 (-164.8 uncal um), Max = 35081 (-164.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:14:30.738 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35077, posNoise = 4, negNoise = 5
17-03-17 23:14:30.738 -07 000000610 INF: Z Motor: After move to -0.165658, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:14:30.738 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 23:14:30.738 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:14:30.738 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:14:30.738 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:14:30.738 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:14:30.738 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:14:30.738 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:14:30.738 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:14:30.738 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:14:30.738 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:14:30.738 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:14:30.738 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:14:30.738 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:14:30.748 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:14:30.748 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:14:30.748 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:14:30.748 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:14:30.758 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 23:14:30.758 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:14:30.758 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 23:14:30.758 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:14:30.758 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 470 470 226 226 36365 150\n [Camera]
17-03-17 23:14:30.958 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:14:31.428 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 662
17-03-17 23:14:31.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 662
17-03-17 23:14:31.428 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:14:31.428 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 662
17-03-17 23:14:31.428 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 662
17-03-17 23:14:31.438 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:14:31.438 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:14:31.438 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 23:14:31.438 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:14:31.438 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 23:14:31.618 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36365 855
17-03-17 23:14:31.768 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1005
17-03-17 23:14:31.808 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 23:14:31.808 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 23:14:31.808 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 23:14:31.808 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:14:31.808 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 23:14:31.808 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:14:31.818 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 23:14:31.818 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 23:14:31.818 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 23:14:31.818 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 23:14:31.998 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1231
17-03-17 23:14:31.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1231
17-03-17 23:14:31.998 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:14:31.998 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1231
17-03-17 23:14:31.998 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1231
17-03-17 23:14:31.998 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:14:31.998 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:14:31.998 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 23:14:31.998 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:14:31.998 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2602438304, 0x0, 391868352) start.
17-03-17 23:14:32.048 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:14:32.048 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 72. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1154, R2=1202, Total=2356. Warn if over 250 bubbles per interval.
17-03-17 23:14:32.188 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1423
17-03-17 23:14:32.188 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:14:32.188 -07 000000610 INF: FPGA: 'CAMDBLSNAP 470 470 226 226 36365 150' command took 2 ms to send, 1424 ms to get response, and 1430 ms overall
17-03-17 23:14:32.398 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2602438304, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 23:14:32.398 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 23:14:32.398 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:14:32.398 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 23:14:32.398 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 23:14:32.408 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:14:32.408 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:14:32.408 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 23:14:32.408 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 23:14:32.408 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:14:32.418 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 23:14:32.448 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 23:14:32.448 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 23:14:32.488 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-17 23:14:32.488 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-17 23:14:32.498 -07 000000409 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 73, FrontChillerTemperature: 3.96762,
17-03-17 23:14:32.508 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 23:14:32.508 -07 000000448 INF: FPGA: Recv EMCUR 
17-03-17 23:14:32.518 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 23:14:32.528 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-17 23:14:33.028 -07 000000502 INF: FPGA: Recv EMIN
17-03-17 23:14:33.028 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 492 ms to get response, and 512 ms overall
17-03-17 23:14:33.028 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-17 23:14:33.028 -07 000000462 INF: FPGA: Recv EMCUR 
17-03-17 23:14:33.038 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:14:33.038 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:14:33.038 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.8310546875, Z-Position -0.165665441307684. ------
17-03-17 23:14:33.038 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:14:33.038 -07 000000448 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.14017 mm
17-03-17 23:14:33.038 -07 000000448 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:14:33.048 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:14:33.048 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:14:33.048 -07 000000478 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:14:33.048 -07 000000593 INF: Z Motor: Entering MoveAbsStepped (DAC = 30619, sync = True, waitForSettling = False)
17-03-17 23:14:33.048 -07 000000593 INF: Z Motor: Moving to -0.140165 mm, started at -0.165665 mm, distance = 25.50 um
17-03-17 23:14:33.048 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 23:14:33.048 -07 000000541 INF: Y Motor: Moving to 59.9126 mm, started at 74.8311 mm, delta = -14.9184 mm
17-03-17 23:14:33.058 -07 000000593 INF: FPGA: Xmit ZDACW 30619\n [Z Motor]
17-03-17 23:14:33.058 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 23:14:33.068 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:14:33.068 -07 000000593 INF: FPGA: 'ZDACW 30619' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 23:14:33.068 -07 000000486 INF: FPGA: Recv YRDPOS 153255
17-03-17 23:14:33.078 -07 000000593 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:14:33.078 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 23:14:33.078 -07 000000541 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:14:33.078 -07 000000547 INF: FPGA: Recv ZDACR 30619
17-03-17 23:14:33.078 -07 000000541 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-17 23:14:33.078 -07 000000541 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 23:14:33.088 -07 000000593 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:14:33.088 -07 000000593 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-17 23:14:33.088 -07 000000541 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 23:14:33.248 -07 000000429 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:14:33.248 -07 000000478 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 23:14:34.708 -07 000000429 INF: FPGA: Recv YMVTO 122703 23902
17-03-17 23:14:34.708 -07 000000541 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1618 ms to get response, and 1632 ms overall
17-03-17 23:14:34.708 -07 000000541 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 23:14:34.708 -07 000000541 INF: Y Motor: To move from 74.832 to 59.913 (-14.918 mm) should take 23870 steps, but required 23902 steps (14.939 mm). Slippage = 0.020 mm (0.00%).
17-03-17 23:14:34.708 -07 000000541 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1633 ms, distance = 14.918 mm, average velocity = 9.136 mm/sec
17-03-17 23:14:37.048 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:14:37.048 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 72. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1154, R2=1202, Total=2356. Warn if over 250 bubbles per interval.
17-03-17 23:14:37.558 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:14:37.558 -07 000000409 INF: FPGA: Recv YRDPOS 122698
17-03-17 23:14:37.568 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:14:37.568 -07 000000541 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:14:37.598 -07 000000541 INF: Y Motor: After move to 59.912609, error = -0.001476, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:14:37.598 -07 000000541 INF: Y Motor: Position error after settling = -3 encoder counts (-0.001 mm), Delta during settling = -5 counts (-0.002 mm)
17-03-17 23:14:37.598 -07 000000541 INF: Y Motor: Moved to 59.9111 after 4552 ms
17-03-17 23:14:37.598 -07 000000448 INF: Z Motor: EndOfMoveAbsStepped: target = -0.140165 mm (DAC = 30619)
17-03-17 23:14:37.598 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:37.608 -07 000000576 INF: FPGA: Recv ZSGSRD 31115
17-03-17 23:14:37.608 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 4 ms to get response, and 5 ms overall
17-03-17 23:14:37.608 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:37.608 -07 000000551 INF: FPGA: Recv ZSGSRD 31108
17-03-17 23:14:37.618 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:14:37.618 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:37.618 -07 000000382 INF: FPGA: Recv ZSGSRD 31107
17-03-17 23:14:37.628 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:37.628 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:37.628 -07 000000478 INF: FPGA: Recv ZSGSRD 31111
17-03-17 23:14:37.638 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:37.638 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:37.638 -07 000000541 INF: FPGA: Recv ZSGSRD 31105
17-03-17 23:14:37.648 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:37.648 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:37.648 -07 000000623 INF: FPGA: Recv ZSGSRD 31108
17-03-17 23:14:37.658 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:37.658 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:37.658 -07 000000409 INF: FPGA: Recv ZSGSRD 31109
17-03-17 23:14:37.668 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:37.668 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:37.668 -07 000000382 INF: FPGA: Recv ZSGSRD 31107
17-03-17 23:14:37.678 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:37.678 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:37.678 -07 000000502 INF: FPGA: Recv ZSGSRD 31111
17-03-17 23:14:37.688 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:37.688 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:37.688 -07 000000547 INF: FPGA: Recv ZSGSRD 31103
17-03-17 23:14:37.698 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:37.698 -07 000000448 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:14:37.698 -07 000000482 INF: FPGA: Recv ZPIEZORD 26677
17-03-17 23:14:37.708 -07 000000448 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:37.708 -07 000000448 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 46.7 V, since DAC is at 4.672 V. Piezo Error = -9.7 V.
17-03-17 23:14:37.708 -07 000000448 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.2 um, Read 10 ADC samples: Avg = 31108 (-139.4 uncal um), Error = 0.8 uncal um, Median = 31108 (-139.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 31103 (-139.3 uncal um), Max = 31115 (-139.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:14:37.708 -07 000000448 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31108, posNoise = 7, negNoise = 5
17-03-17 23:14:37.708 -07 000000448 INF: Z Motor: After move to -0.140165, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:14:37.708 -07 000000448 INF: Z Motor: Settle wait time = 4556 ms, measure time = 101 ms (allowed 150 ms), total time = 4657 ms
17-03-17 23:14:37.708 -07 000000448 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 23:14:37.758 -07 000000448 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4714 ms
17-03-17 23:14:37.758 -07 000000448 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:14:37.758 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:14:37.758 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:14:37.758 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:14:37.758 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:14:37.758 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:14:37.758 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:14:37.768 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:14:37.768 -07 000000547 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 23:14:37.788 -07 000000547 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-17 23:14:37.788 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:14:37.788 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 23:14:37.788 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:14:37.808 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 23:14:37.808 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 42 ms.
17-03-17 23:14:37.808 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:14:37.858 -07 000000593 INF: FPGA: Recv @CAMSNAP turning led on 41
17-03-17 23:14:37.888 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 73, FrontChillerTemperature: 3.989471,
17-03-17 23:14:38.058 -07 000000475 INF: FPGA: Recv @CAMSNAP img rdy 241
17-03-17 23:14:38.058 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 241
17-03-17 23:14:38.058 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:14:38.058 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 615280568, 0x0, 559484976) start.
17-03-17 23:14:38.088 -07 000000501 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:14:38.088 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-17 23:14:38.088 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 23:14:38.178 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 615280568, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 23:14:38.178 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:14:38.178 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:14:38.178 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-17 23:14:38.188 -07 000000486 INF: Image SNR check: start
17-03-17 23:14:38.208 -07 000000409 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:14:38.208 -07 000000486 INF: Image SNR check: pass  [peak (Max-Min)=55.23]
17-03-17 23:14:38.208 -07 000000486 INF: Autofocus start
17-03-17 23:14:38.208 -07 000000486 INF: MeasureProfile start
17-03-17 23:14:38.208 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:14:38.218 -07 000000409 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 23:14:38.218 -07 000000486 INF: MeasureProfile done
17-03-17 23:14:38.218 -07 000000486 INF: X=-26  Z correction [um]=-0.1299663
17-03-17 23:14:38.218 -07 000000486 INF: Autofocus finished
17-03-17 23:14:38.238 -07 000000409 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:14:38.438 -07 000000623 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:14:38.438 -07 000000409 INF: FPGA: 'FOCMRRIMG' command took 2 ms to send, 195 ms to get response, and 224 ms overall
17-03-17 23:14:38.438 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.9111328125, Z-position -0.140167743317035. ----------
17-03-17 23:14:38.448 -07 000000610 INF: Cycle	73	Tile	1	Exposure Settings		A	470	G	226	T	226	C	470
17-03-17 23:14:38.448 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29104, sync = True, waitForSettling = True)
17-03-17 23:14:38.448 -07 000000610 INF: Z Motor: Moving to -0.133230 mm, started at -0.140168 mm, distance = 6.94 um
17-03-17 23:14:38.448 -07 000000610 INF: FPGA: Xmit ZDACW 29104\n [Z Motor]
17-03-17 23:14:38.448 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 23:14:38.458 -07 000000610 INF: FPGA: 'ZDACW 29104' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:14:38.458 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:14:38.458 -07 000000623 INF: FPGA: Recv ZDACR 29104
17-03-17 23:14:38.468 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:38.468 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:14:38.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:38.618 -07 000000502 INF: FPGA: Recv ZSGSRD 30027
17-03-17 23:14:38.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:38.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:38.628 -07 000000593 INF: FPGA: Recv ZSGSRD 30025
17-03-17 23:14:38.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:38.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:38.638 -07 000000561 INF: FPGA: Recv ZSGSRD 30028
17-03-17 23:14:38.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:38.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:38.648 -07 000000429 INF: FPGA: Recv ZSGSRD 30029
17-03-17 23:14:38.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:38.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:38.658 -07 000000623 INF: FPGA: Recv ZSGSRD 30026
17-03-17 23:14:38.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:38.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:38.668 -07 000000502 INF: FPGA: Recv ZSGSRD 30028
17-03-17 23:14:38.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:38.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:38.678 -07 000000593 INF: FPGA: Recv ZSGSRD 30028
17-03-17 23:14:38.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:38.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:38.688 -07 000000415 INF: FPGA: Recv ZSGSRD 30024
17-03-17 23:14:38.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:38.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:38.698 -07 000000475 INF: FPGA: Recv ZSGSRD 30024
17-03-17 23:14:38.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:38.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:38.708 -07 000000623 INF: FPGA: Recv ZSGSRD 30024
17-03-17 23:14:38.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:38.718 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:14:38.718 -07 000000561 INF: FPGA: Recv ZPIEZORD 25575
17-03-17 23:14:38.728 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:14:38.728 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.441 V. Piezo Error = -9.8 V.
17-03-17 23:14:38.728 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.2 um, Read 10 ADC samples: Avg = 30026 (-132.4 uncal um), Error = 0.8 uncal um, Median = 30026 (-132.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 30024 (-132.4 uncal um), Max = 30029 (-132.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 23:14:38.728 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30026, posNoise = 3, negNoise = 2
17-03-17 23:14:38.728 -07 000000610 INF: Z Motor: After move to -0.133230, error = 0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:14:38.728 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 23:14:38.728 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:14:38.728 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:14:38.728 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:14:38.728 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:14:38.728 -07 000000409 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:14:38.728 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:14:38.728 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:14:38.728 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:14:38.728 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:14:38.728 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:14:38.728 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:14:38.728 -07 000000382 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 23:14:38.738 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 23:14:38.738 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:14:38.748 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 23:14:38.748 -07 000000409 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 23:14:38.758 -07 000000382 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 20 ms.
17-03-17 23:14:38.758 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:14:38.758 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 23:14:38.758 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:14:38.768 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 23:14:38.768 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 33 ms.
17-03-17 23:14:38.768 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 470 470 226 226 29280 150\n [Camera]
17-03-17 23:14:38.968 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:14:39.438 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 662
17-03-17 23:14:39.438 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 662
17-03-17 23:14:39.438 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:14:39.438 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:14:39.438 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-17 23:14:39.438 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 662
17-03-17 23:14:39.438 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 662
17-03-17 23:14:39.438 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:14:39.438 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:14:39.438 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-17 23:14:39.628 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29280 855
17-03-17 23:14:39.778 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1005
17-03-17 23:14:39.818 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 23:14:39.818 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 23:14:39.818 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 23:14:39.818 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:14:39.818 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 23:14:39.818 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:14:39.818 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:14:39.818 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:14:39.818 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 23:14:39.828 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 23:14:40.008 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1231
17-03-17 23:14:40.008 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1231
17-03-17 23:14:40.008 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:14:40.008 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:14:40.008 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 23:14:40.008 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1231
17-03-17 23:14:40.008 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1231
17-03-17 23:14:40.008 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:14:40.008 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:14:40.008 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 23:14:40.198 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP 1424
17-03-17 23:14:40.198 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:14:40.198 -07 000000610 INF: FPGA: 'CAMDBLSNAP 470 470 226 226 29280 150' command took 2 ms to send, 1426 ms to get response, and 1431 ms overall
17-03-17 23:14:40.208 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:14:40.208 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.9111328125, Z-Position -0.13321674577965. ------
17-03-17 23:14:40.208 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:14:40.208 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13931 mm
17-03-17 23:14:40.208 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:14:40.208 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:14:40.208 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 23:14:40.208 -07 000000382 INF: Y Motor: Moving to 60.7426 mm, started at 59.9111 mm, delta = 0.8315 mm
17-03-17 23:14:40.208 -07 000000409 INF: Z Motor: Entering MoveAbsStepped (DAC = 30433, sync = True, waitForSettling = False)
17-03-17 23:14:40.208 -07 000000409 INF: Z Motor: Moving to -0.139313 mm, started at -0.133217 mm, distance = -6.10 um
17-03-17 23:14:40.218 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:14:40.218 -07 000000409 INF: FPGA: Xmit ZDACW 30433\n [Z Motor]
17-03-17 23:14:40.218 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 23:14:40.228 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:14:40.228 -07 000000409 INF: FPGA: 'ZDACW 30433' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 23:14:40.228 -07 000000475 INF: FPGA: Recv YRDPOS 122698
17-03-17 23:14:40.238 -07 000000478 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:14:40.238 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 23:14:40.238 -07 000000382 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:14:40.238 -07 000000382 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:14:40.238 -07 000000382 INF: Y Motor: Moving 1330 steps2
17-03-17 23:14:40.248 -07 000000409 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:14:40.248 -07 000000475 INF: FPGA: Recv ZDACR 30433
17-03-17 23:14:40.258 -07 000000409 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:14:40.258 -07 000000409 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 23:14:40.258 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:14:40.408 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 23:14:40.408 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 23:14:40.408 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:14:40.418 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 23:14:40.418 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 23:14:40.418 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:14:40.418 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:14:40.418 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 23:14:40.418 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:14:40.428 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 23:14:40.438 -07 000000409 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:14:40.438 -07 000000478 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 23:14:40.628 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-17 23:14:40.628 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 23:14:40.668 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:14:40.668 -07 000000561 INF: FPGA: Recv YRDPOS 124381
17-03-17 23:14:40.678 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:14:40.678 -07 000000382 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:14:40.678 -07 000000382 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 23:14:40.678 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.831 mm, average velocity = 2.094 mm/sec
17-03-17 23:14:41.628 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:14:41.628 -07 000000551 INF: FPGA: Recv YRDPOS 124381
17-03-17 23:14:41.638 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:41.638 -07 000000382 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:14:41.658 -07 000000382 INF: Y Motor: After move to 60.742607, error = -0.009697, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:14:41.658 -07 000000382 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:14:41.658 -07 000000382 INF: Y Motor: Moved to 60.7329 after 1450 ms (table move)
17-03-17 23:14:41.668 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139313 mm (DAC = 30433)
17-03-17 23:14:41.668 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:41.668 -07 000000623 INF: FPGA: Recv ZSGSRD 30982
17-03-17 23:14:41.678 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:14:41.678 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:41.678 -07 000000448 INF: FPGA: Recv ZSGSRD 30978
17-03-17 23:14:41.688 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:41.688 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:41.688 -07 000000502 INF: FPGA: Recv ZSGSRD 30967
17-03-17 23:14:41.698 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:41.698 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:41.698 -07 000000462 INF: FPGA: Recv ZSGSRD 30973
17-03-17 23:14:41.708 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:41.708 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:41.708 -07 000000551 INF: FPGA: Recv ZSGSRD 30976
17-03-17 23:14:41.718 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:41.718 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:41.718 -07 000000576 INF: FPGA: Recv ZSGSRD 30979
17-03-17 23:14:41.728 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:41.728 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:41.728 -07 000000482 INF: FPGA: Recv ZSGSRD 30977
17-03-17 23:14:41.738 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:41.738 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:41.738 -07 000000409 INF: FPGA: Recv ZSGSRD 30969
17-03-17 23:14:41.748 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:41.748 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:41.748 -07 000000618 INF: FPGA: Recv ZSGSRD 30975
17-03-17 23:14:41.758 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:41.758 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:41.758 -07 000000475 INF: FPGA: Recv ZSGSRD 30985
17-03-17 23:14:41.768 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:41.768 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:14:41.768 -07 000000593 INF: FPGA: Recv ZPIEZORD 26815
17-03-17 23:14:41.778 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:41.778 -07 000000501 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.644 V. Piezo Error = -9.2 V.
17-03-17 23:14:41.778 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.3 um, Read 10 ADC samples: Avg = 30976 (-138.5 uncal um), Error = 0.8 uncal um, Median = 30976 (-138.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30967 (-138.5 uncal um), Max = 30985 (-138.6 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 23:14:41.778 -07 000000501 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30976, posNoise = 9, negNoise = 9
17-03-17 23:14:41.778 -07 000000501 INF: Z Motor: After move to -0.139313, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:14:41.778 -07 000000501 INF: Z Motor: Settle wait time = 1454 ms, measure time = 109 ms (allowed 150 ms), total time = 1563 ms
17-03-17 23:14:41.778 -07 000000501 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 23:14:41.828 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1616 ms
17-03-17 23:14:41.828 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:14:41.828 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:14:41.828 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:14:41.828 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:14:41.828 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:14:41.828 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:14:41.828 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:14:41.828 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:14:41.828 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:14:41.838 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:14:41.838 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:14:41.838 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 23:14:41.838 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 23:14:41.848 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:14:41.888 -07 000000482 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:14:42.048 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:14:42.048 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 72. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1154, R2=1202, Total=2356. Warn if over 250 bubbles per interval.
17-03-17 23:14:42.088 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:14:42.088 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:14:42.088 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:14:42.088 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 661079536, 0x0, 559484976) start.
17-03-17 23:14:42.128 -07 000000623 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:14:42.128 -07 000000547 INF: FPGA: Recv CAMSNAP
17-03-17 23:14:42.128 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 285 ms overall
17-03-17 23:14:42.218 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 661079536, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 23:14:42.218 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:14:42.218 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 23:14:42.218 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 23:14:42.328 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:14:42.328 -07 000000627 INF: Autofocus start
17-03-17 23:14:42.328 -07 000000627 INF: MeasureProfile start
17-03-17 23:14:42.328 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:14:42.338 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:14:42.338 -07 000000486 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:14:42.338 -07 000000627 INF: MeasureProfile done
17-03-17 23:14:42.338 -07 000000627 INF: X=16  Z correction [um]=0.0530179
17-03-17 23:14:42.338 -07 000000627 INF: Autofocus finished
17-03-17 23:14:42.538 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:14:42.538 -07 000000486 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:14:42.538 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73291015625, Z-position -0.139319747314322. ----------
17-03-17 23:14:42.538 -07 000000610 INF: Cycle	73	Tile	2	Exposure Settings		A	470	G	226	T	226	C	470
17-03-17 23:14:42.548 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28957, sync = True, waitForSettling = True)
17-03-17 23:14:42.548 -07 000000610 INF: Z Motor: Moving to -0.132557 mm, started at -0.139320 mm, distance = 6.76 um
17-03-17 23:14:42.548 -07 000000610 INF: FPGA: Xmit ZDACW 28957\n [Z Motor]
17-03-17 23:14:42.548 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 23:14:42.558 -07 000000610 INF: FPGA: 'ZDACW 28957' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:14:42.558 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:14:42.558 -07 000000462 INF: FPGA: Recv ZDACR 28957
17-03-17 23:14:42.568 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:42.568 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:14:42.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:42.718 -07 000000561 INF: FPGA: Recv ZSGSRD 29926
17-03-17 23:14:42.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:14:42.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:42.728 -07 000000429 INF: FPGA: Recv ZSGSRD 29924
17-03-17 23:14:42.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:42.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:42.738 -07 000000593 INF: FPGA: Recv ZSGSRD 29920
17-03-17 23:14:42.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:42.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:42.748 -07 000000448 INF: FPGA: Recv ZSGSRD 29924
17-03-17 23:14:42.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:42.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:42.758 -07 000000623 INF: FPGA: Recv ZSGSRD 29928
17-03-17 23:14:42.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:42.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:42.768 -07 000000627 INF: FPGA: Recv ZSGSRD 29928
17-03-17 23:14:42.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:42.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:42.778 -07 000000482 INF: FPGA: Recv ZSGSRD 29921
17-03-17 23:14:42.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:42.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:42.788 -07 000000618 INF: FPGA: Recv ZSGSRD 29927
17-03-17 23:14:42.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:42.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:42.798 -07 000000409 INF: FPGA: Recv ZSGSRD 29930
17-03-17 23:14:42.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:42.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:42.808 -07 000000415 INF: FPGA: Recv ZSGSRD 29922
17-03-17 23:14:42.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:42.818 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:14:42.818 -07 000000561 INF: FPGA: Recv ZPIEZORD 25471
17-03-17 23:14:42.828 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:42.828 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.419 V. Piezo Error = -9.8 V.
17-03-17 23:14:42.828 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.6 um, Read 10 ADC samples: Avg = 29925 (-131.8 uncal um), Error = 0.8 uncal um, Median = 29925 (-131.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29920 (-131.8 uncal um), Max = 29930 (-131.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:14:42.828 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29925, posNoise = 5, negNoise = 5
17-03-17 23:14:42.828 -07 000000610 INF: Z Motor: After move to -0.132557, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:14:42.828 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 23:14:42.828 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:14:42.828 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:14:42.828 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:14:42.828 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:14:42.828 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:14:42.828 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:14:42.828 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:14:42.828 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:14:42.828 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:14:42.828 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:14:42.828 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:14:42.828 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:14:42.838 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 23:14:42.838 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:14:42.838 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 23:14:42.838 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:14:42.848 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 23:14:42.848 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:14:42.848 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 23:14:42.848 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:14:42.858 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 470 470 226 226 29134 150\n [Camera]
17-03-17 23:14:43.058 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 194
17-03-17 23:14:43.248 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 73, FrontChillerTemperature: 3.977204,
17-03-17 23:14:43.528 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 662
17-03-17 23:14:43.528 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 662
17-03-17 23:14:43.528 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:14:43.528 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:14:43.528 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 23:14:43.528 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 662
17-03-17 23:14:43.528 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 662
17-03-17 23:14:43.528 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:14:43.528 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:14:43.528 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 23:14:43.718 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29134 855
17-03-17 23:14:43.868 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1005
17-03-17 23:14:43.908 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 23:14:43.908 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 23:14:43.908 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:14:43.908 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:14:43.918 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 23:14:43.918 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 23:14:43.918 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:14:43.918 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 23:14:43.918 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:14:43.918 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 23:14:44.098 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1231
17-03-17 23:14:44.098 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1231
17-03-17 23:14:44.098 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:14:44.098 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:14:44.098 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 23:14:44.098 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1231
17-03-17 23:14:44.098 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1231
17-03-17 23:14:44.098 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:14:44.098 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:14:44.098 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 23:14:44.288 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1424
17-03-17 23:14:44.288 -07 000000547 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:14:44.288 -07 000000610 INF: FPGA: 'CAMDBLSNAP 470 470 226 226 29134 150' command took 2 ms to send, 1424 ms to get response, and 1433 ms overall
17-03-17 23:14:44.288 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:14:44.288 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73291015625, Z-Position -0.132567900353332. ------
17-03-17 23:14:44.298 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:14:44.298 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13930 mm
17-03-17 23:14:44.298 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:14:44.298 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:14:44.298 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 23:14:44.298 -07 000000576 INF: Y Motor: Moving to 61.5726 mm, started at 60.7329 mm, delta = 0.8397 mm
17-03-17 23:14:44.298 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 30429, sync = True, waitForSettling = False)
17-03-17 23:14:44.298 -07 000000551 INF: Z Motor: Moving to -0.139295 mm, started at -0.132568 mm, distance = -6.73 um
17-03-17 23:14:44.308 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:44.308 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:14:44.308 -07 000000475 INF: FPGA: Recv YRDPOS 124382
17-03-17 23:14:44.318 -07 000000551 INF: FPGA: Xmit ZDACW 30429\n [Z Motor]
17-03-17 23:14:44.318 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 23:14:44.318 -07 000000576 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:14:44.318 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 23:14:44.318 -07 000000576 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:14:44.318 -07 000000576 INF: Y Motor: Moving 1343 steps-20
17-03-17 23:14:44.328 -07 000000486 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:14:44.328 -07 000000551 INF: FPGA: 'ZDACW 30429' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 23:14:44.338 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:14:44.348 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:14:44.348 -07 000000547 INF: FPGA: Recv ZDACR 30429
17-03-17 23:14:44.358 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:14:44.358 -07 000000551 INF: Z Motor: MoveAbsStepped took 58 ms (did NOT wait for settling yet))
17-03-17 23:14:44.498 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 23:14:44.498 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 23:14:44.498 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:14:44.498 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 23:14:44.498 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 23:14:44.498 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:14:44.498 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:14:44.508 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 23:14:44.508 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 23:14:44.508 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 23:14:44.528 -07 000000547 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:14:44.528 -07 000000486 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 23:14:44.708 -07 000000541 INF: FPGA: Recv YMVTILE
17-03-17 23:14:44.708 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-17 23:14:44.758 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:14:44.758 -07 000000486 INF: FPGA: Recv YRDPOS 126083
17-03-17 23:14:44.768 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:14:44.768 -07 000000576 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:14:44.768 -07 000000576 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 23:14:44.768 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.840 mm, average velocity = 2.142 mm/sec
17-03-17 23:14:45.718 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:14:45.718 -07 000000502 INF: FPGA: Recv YRDPOS 126083
17-03-17 23:14:45.728 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:14:45.728 -07 000000576 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:14:45.748 -07 000000576 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:14:45.748 -07 000000576 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:14:45.748 -07 000000576 INF: Y Motor: Moved to 61.5640 after 1452 ms (table move)
17-03-17 23:14:45.748 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139295 mm (DAC = 30429)
17-03-17 23:14:45.748 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:45.758 -07 000000429 INF: FPGA: Recv ZSGSRD 30973
17-03-17 23:14:45.758 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 23:14:45.758 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:45.758 -07 000000409 INF: FPGA: Recv ZSGSRD 30971
17-03-17 23:14:45.768 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:14:45.768 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:45.768 -07 000000501 INF: FPGA: Recv ZSGSRD 30972
17-03-17 23:14:45.778 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:45.778 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:45.778 -07 000000502 INF: FPGA: Recv ZSGSRD 30977
17-03-17 23:14:45.788 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:45.788 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:45.788 -07 000000486 INF: FPGA: Recv ZSGSRD 30971
17-03-17 23:14:45.798 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:45.798 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:45.798 -07 000000501 INF: FPGA: Recv ZSGSRD 30974
17-03-17 23:14:45.808 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:45.808 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:45.808 -07 000000475 INF: FPGA: Recv ZSGSRD 30967
17-03-17 23:14:45.818 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:45.818 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:45.818 -07 000000541 INF: FPGA: Recv ZSGSRD 30973
17-03-17 23:14:45.828 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:45.828 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:45.828 -07 000000478 INF: FPGA: Recv ZSGSRD 30974
17-03-17 23:14:45.838 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:45.838 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:45.838 -07 000000462 INF: FPGA: Recv ZSGSRD 30970
17-03-17 23:14:45.848 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:45.848 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:14:45.848 -07 000000551 INF: FPGA: Recv ZPIEZORD 26851
17-03-17 23:14:45.858 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:45.858 -07 000000382 INF: Z Motor: Piezo is near 37.4 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.643 V. Piezo Error = -9.1 V.
17-03-17 23:14:45.858 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.3 um, Read 10 ADC samples: Avg = 30972 (-138.5 uncal um), Error = 0.8 uncal um, Median = 30972 (-138.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30967 (-138.5 uncal um), Max = 30977 (-138.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:14:45.858 -07 000000382 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30972, posNoise = 5, negNoise = 5
17-03-17 23:14:45.858 -07 000000382 INF: Z Motor: After move to -0.139295, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:14:45.858 -07 000000382 INF: Z Motor: Settle wait time = 1455 ms, measure time = 101 ms (allowed 150 ms), total time = 1556 ms
17-03-17 23:14:45.858 -07 000000382 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 23:14:45.908 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1609 ms
17-03-17 23:14:45.908 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:14:45.908 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:14:45.908 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:14:45.908 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:14:45.908 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:14:45.908 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:14:45.908 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:14:45.918 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 23:14:45.918 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:14:45.918 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:14:45.918 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:14:45.928 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 23:14:45.928 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 23:14:45.928 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:14:45.968 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:14:46.168 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:14:46.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:14:46.168 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:14:46.168 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2539065104, 0x0, 559484976) start.
17-03-17 23:14:46.208 -07 000000561 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:14:46.208 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-17 23:14:46.208 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 23:14:46.288 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2539065104, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 23:14:46.288 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:14:46.288 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 23:14:46.288 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 23:14:46.308 -07 000000462 INF: Autofocus start
17-03-17 23:14:46.308 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:14:46.308 -07 000000462 INF: MeasureProfile start
17-03-17 23:14:46.308 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:14:46.318 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:14:46.318 -07 000000448 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:14:46.318 -07 000000462 INF: MeasureProfile done
17-03-17 23:14:46.318 -07 000000462 INF: X=0  Z correction [um]=-0.02394831
17-03-17 23:14:46.318 -07 000000462 INF: Autofocus finished
17-03-17 23:14:46.518 -07 000000415 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:14:46.518 -07 000000448 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:14:46.518 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.139294050465755. ----------
17-03-17 23:14:46.528 -07 000000610 INF: Cycle	73	Tile	3	Exposure Settings		A	470	G	226	T	226	C	470
17-03-17 23:14:46.528 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28937, sync = True, waitForSettling = True)
17-03-17 23:14:46.528 -07 000000610 INF: Z Motor: Moving to -0.132465 mm, started at -0.139294 mm, distance = 6.83 um
17-03-17 23:14:46.528 -07 000000610 INF: FPGA: Xmit ZDACW 28937\n [Z Motor]
17-03-17 23:14:46.528 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 23:14:46.538 -07 000000610 INF: FPGA: 'ZDACW 28937' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:14:46.538 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:14:46.538 -07 000000541 INF: FPGA: Recv ZDACR 28937
17-03-17 23:14:46.548 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:46.548 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:14:46.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:46.698 -07 000000618 INF: FPGA: Recv ZSGSRD 29912
17-03-17 23:14:46.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:14:46.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:46.708 -07 000000486 INF: FPGA: Recv ZSGSRD 29912
17-03-17 23:14:46.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:46.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:46.718 -07 000000501 INF: FPGA: Recv ZSGSRD 29909
17-03-17 23:14:46.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:46.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:46.728 -07 000000627 INF: FPGA: Recv ZSGSRD 29917
17-03-17 23:14:46.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:46.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:46.738 -07 000000593 INF: FPGA: Recv ZSGSRD 29907
17-03-17 23:14:46.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:46.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:46.748 -07 000000415 INF: FPGA: Recv ZSGSRD 29902
17-03-17 23:14:46.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:46.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:46.758 -07 000000409 INF: FPGA: Recv ZSGSRD 29906
17-03-17 23:14:46.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:46.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:46.768 -07 000000501 INF: FPGA: Recv ZSGSRD 29909
17-03-17 23:14:46.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:46.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:46.778 -07 000000623 INF: FPGA: Recv ZSGSRD 29912
17-03-17 23:14:46.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:46.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:46.788 -07 000000482 INF: FPGA: Recv ZSGSRD 29906
17-03-17 23:14:46.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:46.798 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:14:46.798 -07 000000547 INF: FPGA: Recv ZPIEZORD 25499
17-03-17 23:14:46.808 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:46.808 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.416 V. Piezo Error = -9.7 V.
17-03-17 23:14:46.808 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.5 um, Read 10 ADC samples: Avg = 29909 (-131.7 uncal um), Error = 0.8 uncal um, Median = 29909 (-131.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29902 (-131.6 uncal um), Max = 29917 (-131.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 23:14:46.808 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29909, posNoise = 8, negNoise = 7
17-03-17 23:14:46.808 -07 000000610 INF: Z Motor: After move to -0.132465, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:14:46.808 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 23:14:46.808 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:14:46.808 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:14:46.808 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:14:46.808 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:14:46.808 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:14:46.808 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:14:46.808 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:14:46.808 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:14:46.808 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:14:46.808 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:14:46.808 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:14:46.808 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:14:46.818 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 23:14:46.818 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:14:46.818 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:14:46.818 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:14:46.828 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 23:14:46.828 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 23:14:46.828 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 23:14:46.828 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 23:14:46.828 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 470 470 226 226 29113 150\n [Camera]
17-03-17 23:14:47.028 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:14:47.048 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:14:47.048 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 72. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1154, R2=1202, Total=2356. Warn if over 250 bubbles per interval.
17-03-17 23:14:47.498 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 662
17-03-17 23:14:47.498 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 662
17-03-17 23:14:47.498 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:14:47.498 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:14:47.498 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 23:14:47.498 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 662
17-03-17 23:14:47.498 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 662
17-03-17 23:14:47.498 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:14:47.498 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:14:47.498 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 23:14:47.688 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29113 857
17-03-17 23:14:47.838 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1005
17-03-17 23:14:47.878 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 23:14:47.878 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 23:14:47.878 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:14:47.878 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 23:14:47.878 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 23:14:47.878 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:14:47.888 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:14:47.888 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:14:47.888 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 23:14:47.898 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 23:14:48.068 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1231
17-03-17 23:14:48.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1231
17-03-17 23:14:48.068 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:14:48.068 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:14:48.068 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 23:14:48.068 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1231
17-03-17 23:14:48.068 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1231
17-03-17 23:14:48.068 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:14:48.068 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:14:48.068 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-17 23:14:48.258 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP 1424
17-03-17 23:14:48.258 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:14:48.258 -07 000000610 INF: FPGA: 'CAMDBLSNAP 470 470 226 226 29113 150' command took 2 ms to send, 1423 ms to get response, and 1431 ms overall
17-03-17 23:14:48.258 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:14:48.258 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56396484375, Z-Position -0.132465112959063. ------
17-03-17 23:14:48.258 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:14:48.258 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13889 mm
17-03-17 23:14:48.258 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:14:48.268 -07 000000475 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 23:14:48.268 -07 000000475 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-17 23:14:48.268 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:14:48.268 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 4 ms overall
17-03-17 23:14:48.268 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:14:48.268 -07 000000415 INF: Z Motor: Entering MoveAbsStepped (DAC = 30340, sync = True, waitForSettling = False)
17-03-17 23:14:48.268 -07 000000415 INF: Z Motor: Moving to -0.138888 mm, started at -0.132465 mm, distance = -6.42 um
17-03-17 23:14:48.268 -07 000000576 INF: FPGA: Recv YRDPOS 126084
17-03-17 23:14:48.278 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:14:48.278 -07 000000475 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:14:48.278 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:14:48.278 -07 000000475 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:14:48.278 -07 000000475 INF: Y Motor: Moving 1341 steps-18
17-03-17 23:14:48.288 -07 000000415 INF: FPGA: Xmit ZDACW 30340\n [Z Motor]
17-03-17 23:14:48.288 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 23:14:48.298 -07 000000475 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:14:48.298 -07 000000415 INF: FPGA: 'ZDACW 30340' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 23:14:48.308 -07 000000415 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:14:48.308 -07 000000478 INF: FPGA: Recv ZDACR 30340
17-03-17 23:14:48.318 -07 000000415 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:14:48.318 -07 000000415 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-17 23:14:48.448 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 23:14:48.448 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 23:14:48.448 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:14:48.458 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:14:48.458 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 23:14:48.458 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 23:14:48.458 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:14:48.458 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 23:14:48.458 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 23:14:48.458 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 23:14:48.478 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:14:48.478 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 209 ms overall
17-03-17 23:14:48.638 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 73, FrontChillerTemperature: 4.018051,
17-03-17 23:14:48.668 -07 000000623 INF: FPGA: Recv YMVTILE
17-03-17 23:14:48.668 -07 000000475 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 23:14:48.708 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:14:48.718 -07 000000551 INF: FPGA: Recv YRDPOS 127786
17-03-17 23:14:48.718 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 23:14:48.718 -07 000000475 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:14:48.718 -07 000000475 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 23:14:48.718 -07 000000475 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.839 mm, average velocity = 2.129 mm/sec
17-03-17 23:14:49.668 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:14:49.668 -07 000000618 INF: FPGA: Recv YRDPOS 127786
17-03-17 23:14:49.678 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:14:49.678 -07 000000475 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:14:49.698 -07 000000475 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:14:49.698 -07 000000475 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:14:49.698 -07 000000475 INF: Y Motor: Moved to 62.3955 after 1432 ms (table move)
17-03-17 23:14:49.698 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138888 mm (DAC = 30340)
17-03-17 23:14:49.698 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:49.708 -07 000000502 INF: FPGA: Recv ZSGSRD 30922
17-03-17 23:14:49.708 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 23:14:49.708 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:49.708 -07 000000486 INF: FPGA: Recv ZSGSRD 30902
17-03-17 23:14:49.718 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:14:49.718 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:49.718 -07 000000448 INF: FPGA: Recv ZSGSRD 30911
17-03-17 23:14:49.728 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:49.728 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:49.728 -07 000000627 INF: FPGA: Recv ZSGSRD 30914
17-03-17 23:14:49.738 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:49.738 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:49.738 -07 000000382 INF: FPGA: Recv ZSGSRD 30909
17-03-17 23:14:49.748 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:49.748 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:49.748 -07 000000482 INF: FPGA: Recv ZSGSRD 30911
17-03-17 23:14:49.758 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:49.758 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:49.758 -07 000000547 INF: FPGA: Recv ZSGSRD 30907
17-03-17 23:14:49.768 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:49.768 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:49.768 -07 000000576 INF: FPGA: Recv ZSGSRD 30911
17-03-17 23:14:49.778 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:49.778 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:49.778 -07 000000475 INF: FPGA: Recv ZSGSRD 30907
17-03-17 23:14:49.788 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:49.788 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:49.788 -07 000000382 INF: FPGA: Recv ZSGSRD 30912
17-03-17 23:14:49.798 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:49.798 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:14:49.798 -07 000000618 INF: FPGA: Recv ZPIEZORD 26768
17-03-17 23:14:49.808 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:49.808 -07 000000561 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.630 V. Piezo Error = -9.1 V.
17-03-17 23:14:49.808 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.9 um, Read 10 ADC samples: Avg = 30911 (-138.1 uncal um), Error = 0.8 uncal um, Median = 30911 (-138.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 30902 (-138.0 uncal um), Max = 30922 (-138.2 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 23:14:49.808 -07 000000561 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30911, posNoise = 11, negNoise = 9
17-03-17 23:14:49.808 -07 000000561 INF: Z Motor: After move to -0.138888, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:14:49.808 -07 000000561 INF: Z Motor: Settle wait time = 1434 ms, measure time = 102 ms (allowed 150 ms), total time = 1536 ms
17-03-17 23:14:49.808 -07 000000561 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 23:14:49.858 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-17 23:14:49.858 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:14:49.858 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:14:49.858 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:14:49.858 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:14:49.858 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:14:49.858 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:14:49.858 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:14:49.858 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:14:49.868 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:14:49.868 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:14:49.868 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:14:49.878 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 23:14:49.878 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 23:14:49.878 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:14:49.928 -07 000000478 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:14:50.128 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:14:50.128 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:14:50.128 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:14:50.128 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2671610696, 0x0, 559484976) start.
17-03-17 23:14:50.168 -07 000000486 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:14:50.168 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-17 23:14:50.168 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 23:14:50.248 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2671610696, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 23:14:50.248 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:14:50.248 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 23:14:50.248 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-17 23:14:50.268 -07 000000448 INF: Autofocus start
17-03-17 23:14:50.268 -07 000000448 INF: MeasureProfile start
17-03-17 23:14:50.268 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:14:50.268 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:14:50.278 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:14:50.278 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:14:50.278 -07 000000448 INF: MeasureProfile done
17-03-17 23:14:50.278 -07 000000448 INF: X=16  Z correction [um]=0.0530179
17-03-17 23:14:50.278 -07 000000448 INF: Autofocus finished
17-03-17 23:14:50.478 -07 000000541 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:14:50.478 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-17 23:14:50.488 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.138902173525108. ----------
17-03-17 23:14:50.488 -07 000000610 INF: Cycle	73	Tile	4	Exposure Settings		A	470	G	226	T	226	C	470
17-03-17 23:14:50.488 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28864, sync = True, waitForSettling = True)
17-03-17 23:14:50.488 -07 000000610 INF: Z Motor: Moving to -0.132131 mm, started at -0.138902 mm, distance = 6.77 um
17-03-17 23:14:50.488 -07 000000610 INF: FPGA: Xmit ZDACW 28864\n [Z Motor]
17-03-17 23:14:50.488 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 23:14:50.498 -07 000000610 INF: FPGA: 'ZDACW 28864' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:14:50.498 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:14:50.498 -07 000000429 INF: FPGA: Recv ZDACR 28864
17-03-17 23:14:50.508 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:50.508 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:14:50.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:50.658 -07 000000551 INF: FPGA: Recv ZSGSRD 29859
17-03-17 23:14:50.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:14:50.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:50.668 -07 000000593 INF: FPGA: Recv ZSGSRD 29859
17-03-17 23:14:50.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:50.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:50.678 -07 000000541 INF: FPGA: Recv ZSGSRD 29856
17-03-17 23:14:50.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:50.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:50.688 -07 000000462 INF: FPGA: Recv ZSGSRD 29850
17-03-17 23:14:50.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:50.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:50.698 -07 000000448 INF: FPGA: Recv ZSGSRD 29849
17-03-17 23:14:50.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:50.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:50.708 -07 000000551 INF: FPGA: Recv ZSGSRD 29859
17-03-17 23:14:50.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:50.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:50.718 -07 000000576 INF: FPGA: Recv ZSGSRD 29863
17-03-17 23:14:50.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:50.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:50.728 -07 000000627 INF: FPGA: Recv ZSGSRD 29862
17-03-17 23:14:50.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:50.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:50.738 -07 000000475 INF: FPGA: Recv ZSGSRD 29856
17-03-17 23:14:50.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:50.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:50.748 -07 000000482 INF: FPGA: Recv ZSGSRD 29861
17-03-17 23:14:50.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:50.758 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:14:50.758 -07 000000415 INF: FPGA: Recv ZPIEZORD 25410
17-03-17 23:14:50.768 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:50.768 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.404 V. Piezo Error = -9.8 V.
17-03-17 23:14:50.768 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.1 um, Read 10 ADC samples: Avg = 29857 (-131.3 uncal um), Error = 0.8 uncal um, Median = 29859 (-131.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29849 (-131.3 uncal um), Max = 29863 (-131.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 23:14:50.768 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29857, posNoise = 6, negNoise = 8
17-03-17 23:14:50.768 -07 000000610 INF: Z Motor: After move to -0.132131, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:14:50.768 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 23:14:50.768 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:14:50.768 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:14:50.768 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:14:50.768 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:14:50.768 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:14:50.768 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:14:50.768 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:14:50.768 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:14:50.768 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 23:14:50.768 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:14:50.768 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:14:50.768 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:14:50.778 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 23:14:50.778 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:14:50.778 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:14:50.778 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:14:50.788 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 23:14:50.788 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 23:14:50.788 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 23:14:50.788 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:14:50.788 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 470 470 226 226 29041 150\n [Camera]
17-03-17 23:14:50.988 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:14:51.458 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 664
17-03-17 23:14:51.458 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 664
17-03-17 23:14:51.458 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:14:51.458 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:14:51.458 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start.
17-03-17 23:14:51.458 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 664
17-03-17 23:14:51.458 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 664
17-03-17 23:14:51.458 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:14:51.458 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:14:51.458 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) start.
17-03-17 23:14:51.648 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29041 855
17-03-17 23:14:51.798 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1005
17-03-17 23:14:51.838 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 23:14:51.838 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 23:14:51.838 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:14:51.838 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 23:14:51.838 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 23:14:51.838 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:14:51.838 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:14:51.848 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:14:51.848 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 23:14:51.848 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 23:14:52.028 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1231
17-03-17 23:14:52.028 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1231
17-03-17 23:14:52.028 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:14:52.158 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1231
17-03-17 23:14:52.158 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:14:52.158 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1231
17-03-17 23:14:52.158 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 72. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1154, R2=1202, Total=2356. Warn if over 250 bubbles per interval.
17-03-17 23:14:52.158 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:14:52.158 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) start.
17-03-17 23:14:52.158 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:14:52.168 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:14:52.168 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-17 23:14:52.218 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP 1423
17-03-17 23:14:52.218 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:14:52.218 -07 000000610 INF: FPGA: 'CAMDBLSNAP 470 470 226 226 29041 150' command took 2 ms to send, 1424 ms to get response, and 1431 ms overall
17-03-17 23:14:52.218 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:14:52.218 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.3955078125, Z-Position -0.132131053927692. ------
17-03-17 23:14:52.218 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:14:52.218 -07 000000593 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13885 mm
17-03-17 23:14:52.218 -07 000000593 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:14:52.228 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:14:52.228 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 30333, sync = True, waitForSettling = False)
17-03-17 23:14:52.228 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 23:14:52.228 -07 000000627 INF: Z Motor: Moving to -0.138856 mm, started at -0.132131 mm, distance = -6.72 um
17-03-17 23:14:52.228 -07 000000627 INF: FPGA: Xmit ZDACW 30333\n [Z Motor]
17-03-17 23:14:52.228 -07 000000547 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 23:14:52.228 -07 000000547 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-17 23:14:52.228 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 23:14:52.238 -07 000000627 INF: FPGA: 'ZDACW 30333' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:14:52.238 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:14:52.238 -07 000000462 INF: FPGA: Recv YRDPOS 127787
17-03-17 23:14:52.248 -07 000000541 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:14:52.248 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 23:14:52.248 -07 000000547 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:14:52.248 -07 000000547 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:14:52.248 -07 000000547 INF: Y Motor: Moving 1339 steps-15
17-03-17 23:14:52.258 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:14:52.258 -07 000000429 INF: FPGA: Recv ZDACR 30333
17-03-17 23:14:52.268 -07 000000547 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:14:52.268 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:14:52.268 -07 000000627 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-17 23:14:52.448 -07 000000482 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:14:52.448 -07 000000541 INF: FPGA: 'FOCMRRFOC' command took 2 ms to send, 192 ms to get response, and 219 ms overall
17-03-17 23:14:52.558 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 23:14:52.558 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 23:14:52.558 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:14:52.558 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 23:14:52.558 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 23:14:52.558 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:14:52.568 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:14:52.568 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:14:52.568 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 540 ms.
17-03-17 23:14:52.578 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 23:14:52.638 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-17 23:14:52.638 -07 000000547 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-17 23:14:52.678 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:14:52.688 -07 000000448 INF: FPGA: Recv YRDPOS 129483
17-03-17 23:14:52.688 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 23:14:52.688 -07 000000547 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:14:52.688 -07 000000547 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 23:14:52.688 -07 000000547 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.837 mm, average velocity = 2.135 mm/sec
17-03-17 23:14:53.638 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:14:53.638 -07 000000561 INF: FPGA: Recv YRDPOS 129483
17-03-17 23:14:53.648 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:14:53.648 -07 000000547 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:14:53.668 -07 000000547 INF: Y Motor: After move to 63.232609, error = -0.008488, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:14:53.668 -07 000000547 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:14:53.668 -07 000000547 INF: Y Motor: Moved to 63.2241 after 1442 ms (table move)
17-03-17 23:14:53.668 -07 000000593 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138856 mm (DAC = 30333)
17-03-17 23:14:53.668 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:53.678 -07 000000415 INF: FPGA: Recv ZSGSRD 30904
17-03-17 23:14:53.688 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:14:53.688 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:53.688 -07 000000482 INF: FPGA: Recv ZSGSRD 30899
17-03-17 23:14:53.698 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:53.708 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:53.708 -07 000000618 INF: FPGA: Recv ZSGSRD 30915
17-03-17 23:14:53.718 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:14:53.718 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:53.718 -07 000000623 INF: FPGA: Recv ZSGSRD 30907
17-03-17 23:14:53.728 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:53.728 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:53.728 -07 000000462 INF: FPGA: Recv ZSGSRD 30907
17-03-17 23:14:53.738 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:53.738 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:53.738 -07 000000561 INF: FPGA: Recv ZSGSRD 30900
17-03-17 23:14:53.748 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:53.748 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:53.748 -07 000000541 INF: FPGA: Recv ZSGSRD 30902
17-03-17 23:14:53.758 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:53.758 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:53.758 -07 000000618 INF: FPGA: Recv ZSGSRD 30902
17-03-17 23:14:53.768 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:53.768 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:53.768 -07 000000415 INF: FPGA: Recv ZSGSRD 30900
17-03-17 23:14:53.778 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:53.778 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:53.778 -07 000000502 INF: FPGA: Recv ZSGSRD 30907
17-03-17 23:14:53.788 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:53.788 -07 000000593 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:14:53.788 -07 000000486 INF: FPGA: Recv ZPIEZORD 26800
17-03-17 23:14:53.798 -07 000000593 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:53.798 -07 000000593 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.629 V. Piezo Error = -9.0 V.
17-03-17 23:14:53.798 -07 000000593 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.9 um, Read 10 ADC samples: Avg = 30904 (-138.1 uncal um), Error = 0.8 uncal um, Median = 30903 (-138.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30899 (-138.0 uncal um), Max = 30915 (-138.1 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:14:53.798 -07 000000593 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30904, posNoise = 11, negNoise = 5
17-03-17 23:14:53.798 -07 000000593 INF: Z Motor: After move to -0.138856, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:14:53.798 -07 000000593 INF: Z Motor: Settle wait time = 1446 ms, measure time = 121 ms (allowed 150 ms), total time = 1567 ms
17-03-17 23:14:53.798 -07 000000593 INF: Z Motor: Waiting extra 29 ms after reading position to reach expected total of 150 ms
17-03-17 23:14:53.828 -07 000000593 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-17 23:14:53.828 -07 000000593 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:14:53.828 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:14:53.828 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:14:53.828 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:14:53.828 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:14:53.828 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:14:53.828 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:14:53.828 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:14:53.828 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:14:53.838 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:14:53.838 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:14:53.848 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 23:14:53.848 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 23:14:53.848 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:14:53.898 -07 000000409 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:14:54.018 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 73, FrontChillerTemperature: 4.026244,
17-03-17 23:14:54.098 -07 000000409 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:14:54.098 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:14:54.098 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:14:54.098 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-17 23:14:54.138 -07 000000482 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:14:54.138 -07 000000623 INF: FPGA: Recv CAMSNAP
17-03-17 23:14:54.138 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 285 ms to get response, and 288 ms overall
17-03-17 23:14:54.218 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 23:14:54.218 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:14:54.218 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:14:54.218 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 23:14:54.238 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:14:54.238 -07 000000462 INF: Autofocus start
17-03-17 23:14:54.238 -07 000000462 INF: MeasureProfile start
17-03-17 23:14:54.238 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:14:54.248 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:14:54.248 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:14:54.248 -07 000000462 INF: MeasureProfile done
17-03-17 23:14:54.248 -07 000000462 INF: X=0  Z correction [um]=-0.02394831
17-03-17 23:14:54.248 -07 000000462 INF: Autofocus finished
17-03-17 23:14:54.448 -07 000000478 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:14:54.448 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:14:54.448 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22412109375, Z-position -0.138857204040116. ----------
17-03-17 23:14:54.448 -07 000000610 INF: Cycle	73	Tile	5	Exposure Settings		A	470	G	226	T	226	C	470
17-03-17 23:14:54.458 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28840, sync = True, waitForSettling = True)
17-03-17 23:14:54.458 -07 000000610 INF: Z Motor: Moving to -0.132021 mm, started at -0.138857 mm, distance = 6.84 um
17-03-17 23:14:54.458 -07 000000610 INF: FPGA: Xmit ZDACW 28840\n [Z Motor]
17-03-17 23:14:54.458 -07 000000409 INF: FPGA: Recv ZDACW
17-03-17 23:14:54.468 -07 000000610 INF: FPGA: 'ZDACW 28840' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:14:54.468 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:14:54.468 -07 000000547 INF: FPGA: Recv ZDACR 28840
17-03-17 23:14:54.478 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:54.478 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:14:54.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:54.628 -07 000000429 INF: FPGA: Recv ZSGSRD 29835
17-03-17 23:14:54.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:14:54.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:54.638 -07 000000623 INF: FPGA: Recv ZSGSRD 29848
17-03-17 23:14:54.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:54.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:54.648 -07 000000475 INF: FPGA: Recv ZSGSRD 29842
17-03-17 23:14:54.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:54.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:54.658 -07 000000561 INF: FPGA: Recv ZSGSRD 29842
17-03-17 23:14:54.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:54.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:54.668 -07 000000627 INF: FPGA: Recv ZSGSRD 29846
17-03-17 23:14:54.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:54.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:54.678 -07 000000429 INF: FPGA: Recv ZSGSRD 29834
17-03-17 23:14:54.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:54.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:54.688 -07 000000551 INF: FPGA: Recv ZSGSRD 29845
17-03-17 23:14:54.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:54.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:54.698 -07 000000486 INF: FPGA: Recv ZSGSRD 29836
17-03-17 23:14:54.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:54.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:54.708 -07 000000448 INF: FPGA: Recv ZSGSRD 29836
17-03-17 23:14:54.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:54.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:54.718 -07 000000482 INF: FPGA: Recv ZSGSRD 29850
17-03-17 23:14:54.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:54.728 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:14:54.728 -07 000000593 INF: FPGA: Recv ZPIEZORD 25377
17-03-17 23:14:54.738 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:54.738 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.401 V. Piezo Error = -9.8 V.
17-03-17 23:14:54.738 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.0 um, Read 10 ADC samples: Avg = 29841 (-131.2 uncal um), Error = 0.8 uncal um, Median = 29842 (-131.3 uncal um), StdDev = 6 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29834 (-131.2 uncal um), Max = 29850 (-131.3 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 23:14:54.738 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29841, posNoise = 9, negNoise = 7
17-03-17 23:14:54.738 -07 000000610 INF: Z Motor: After move to -0.132021, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:14:54.738 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 23:14:54.738 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:14:54.738 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:14:54.738 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:14:54.738 -07 000000409 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:14:54.738 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:14:54.738 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:14:54.738 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:14:54.738 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:14:54.738 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:14:54.738 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:14:54.738 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:14:54.738 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:14:54.748 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:14:54.748 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:14:54.748 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 23:14:54.748 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:14:54.758 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 23:14:54.758 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:14:54.758 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 23:14:54.758 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:14:54.758 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 470 470 226 226 29017 150\n [Camera]
17-03-17 23:14:54.958 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 195
17-03-17 23:14:55.428 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 662
17-03-17 23:14:55.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 662
17-03-17 23:14:55.428 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 662
17-03-17 23:14:55.428 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 662
17-03-17 23:14:55.428 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:14:55.428 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:14:55.438 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:14:55.438 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:14:55.438 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 23:14:55.438 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 23:14:55.618 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29017 855
17-03-17 23:14:55.768 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1005
17-03-17 23:14:55.808 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 23:14:55.808 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-17 23:14:55.808 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:14:55.808 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:14:55.808 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 23:14:55.808 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 23:14:55.808 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:14:55.818 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:14:55.818 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 23:14:55.818 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 23:14:55.998 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1231
17-03-17 23:14:55.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1231
17-03-17 23:14:55.998 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:14:56.108 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1231
17-03-17 23:14:56.108 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1231
17-03-17 23:14:56.108 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:14:56.118 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:14:56.118 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:14:56.118 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 23:14:56.118 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 23:14:56.188 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP 1424
17-03-17 23:14:56.188 -07 000000623 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:14:56.188 -07 000000610 INF: FPGA: 'CAMDBLSNAP 470 470 226 226 29017 150' command took 2 ms to send, 1424 ms to get response, and 1431 ms overall
17-03-17 23:14:56.188 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:14:56.188 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22412109375, Z-Position -0.132028266533424. ------
17-03-17 23:14:56.188 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:14:56.188 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13840 mm
17-03-17 23:14:56.188 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:14:56.198 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:14:56.198 -07 000000551 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 23:14:56.198 -07 000000551 INF: Y Motor: Moving to 64.0626 mm, started at 63.2241 mm, delta = 0.8385 mm
17-03-17 23:14:56.198 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:14:56.198 -07 000000409 INF: Z Motor: Entering MoveAbsStepped (DAC = 30234, sync = True, waitForSettling = False)
17-03-17 23:14:56.198 -07 000000409 INF: Z Motor: Moving to -0.138402 mm, started at -0.132028 mm, distance = -6.37 um
17-03-17 23:14:56.198 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 23:14:56.198 -07 000000547 INF: FPGA: Recv YRDPOS 129483
17-03-17 23:14:56.208 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:14:56.208 -07 000000551 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:14:56.208 -07 000000551 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:14:56.208 -07 000000551 INF: Y Motor: Moving 1342 steps-17
17-03-17 23:14:56.208 -07 000000593 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:14:56.218 -07 000000409 INF: FPGA: Xmit ZDACW 30234\n [Z Motor]
17-03-17 23:14:56.218 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 23:14:56.228 -07 000000551 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:14:56.228 -07 000000409 INF: FPGA: 'ZDACW 30234' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 23:14:56.238 -07 000000409 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:14:56.238 -07 000000547 INF: FPGA: Recv ZDACR 30234
17-03-17 23:14:56.248 -07 000000409 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 23:14:56.248 -07 000000409 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-17 23:14:56.408 -07 000000541 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:14:56.408 -07 000000593 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 209 ms overall
17-03-17 23:14:56.518 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 23:14:56.518 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 23:14:56.518 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:14:56.518 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 23:14:56.518 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 23:14:56.518 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:14:56.518 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:14:56.518 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:14:56.518 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 525 ms.
17-03-17 23:14:56.528 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-17 23:14:56.608 -07 000000415 INF: FPGA: Recv YMVTILE
17-03-17 23:14:56.608 -07 000000551 INF: FPGA: 'YMVTILE 1327' command took 3 ms to send, 371 ms to get response, and 400 ms overall
17-03-17 23:14:56.658 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:14:56.658 -07 000000482 INF: FPGA: Recv YRDPOS 131189
17-03-17 23:14:56.668 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:14:56.668 -07 000000551 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:14:56.668 -07 000000551 INF: Y Motor: Position error before settling (table move) = -11 encoder counts (-0.005 mm)
17-03-17 23:14:56.668 -07 000000551 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.838 mm, average velocity = 2.096 mm/sec
17-03-17 23:14:57.048 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:14:57.048 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 72. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1154, R2=1202, Total=2356. Warn if over 250 bubbles per interval.
17-03-17 23:14:57.618 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:14:57.618 -07 000000429 INF: FPGA: Recv YRDPOS 131189
17-03-17 23:14:57.628 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:57.628 -07 000000551 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:14:57.648 -07 000000551 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:14:57.648 -07 000000551 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:14:57.648 -07 000000551 INF: Y Motor: Moved to 64.0571 after 1450 ms (table move)
17-03-17 23:14:57.648 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138402 mm (DAC = 30234)
17-03-17 23:14:57.648 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:57.648 -07 000000501 INF: FPGA: Recv ZSGSRD 30832
17-03-17 23:14:57.658 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:14:57.658 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:57.658 -07 000000561 INF: FPGA: Recv ZSGSRD 30833
17-03-17 23:14:57.668 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:57.668 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:57.668 -07 000000541 INF: FPGA: Recv ZSGSRD 30836
17-03-17 23:14:57.678 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:14:57.678 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:57.678 -07 000000429 INF: FPGA: Recv ZSGSRD 30829
17-03-17 23:14:57.688 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:57.688 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:57.688 -07 000000593 INF: FPGA: Recv ZSGSRD 30835
17-03-17 23:14:57.698 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:57.698 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:57.698 -07 000000486 INF: FPGA: Recv ZSGSRD 30838
17-03-17 23:14:57.708 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:57.708 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:57.708 -07 000000561 INF: FPGA: Recv ZSGSRD 30836
17-03-17 23:14:57.718 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:57.718 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:57.718 -07 000000478 INF: FPGA: Recv ZSGSRD 30836
17-03-17 23:14:57.728 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:57.728 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:57.728 -07 000000623 INF: FPGA: Recv ZSGSRD 30822
17-03-17 23:14:57.738 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:57.738 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:57.738 -07 000000448 INF: FPGA: Recv ZSGSRD 30830
17-03-17 23:14:57.748 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:14:57.748 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:14:57.748 -07 000000475 INF: FPGA: Recv ZPIEZORD 26717
17-03-17 23:14:57.758 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:57.758 -07 000000576 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.613 V. Piezo Error = -9.1 V.
17-03-17 23:14:57.758 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.4 um, Read 10 ADC samples: Avg = 30833 (-137.6 uncal um), Error = 0.8 uncal um, Median = 30834 (-137.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30822 (-137.5 uncal um), Max = 30838 (-137.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 23:14:57.758 -07 000000576 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30833, posNoise = 5, negNoise = 11
17-03-17 23:14:57.758 -07 000000576 INF: Z Motor: After move to -0.138402, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:14:57.758 -07 000000576 INF: Z Motor: Settle wait time = 1453 ms, measure time = 104 ms (allowed 150 ms), total time = 1557 ms
17-03-17 23:14:57.758 -07 000000576 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 23:14:57.808 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1610 ms
17-03-17 23:14:57.808 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:14:57.808 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:14:57.808 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:14:57.808 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:14:57.808 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:14:57.808 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:14:57.808 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:14:57.808 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:14:57.808 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:14:57.818 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 23:14:57.818 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:14:57.828 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 23:14:57.828 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 23:14:57.828 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:14:57.878 -07 000000623 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:14:58.078 -07 000000415 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:14:58.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:14:58.078 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:14:58.078 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2468220576, 0x0, 559484976) start.
17-03-17 23:14:58.118 -07 000000593 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:14:58.118 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-17 23:14:58.118 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 285 ms overall
17-03-17 23:14:58.198 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2468220576, 0x0, 559484976) end. Duration was 123 ms.
17-03-17 23:14:58.198 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:14:58.208 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 23:14:58.208 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-17 23:14:58.218 -07 000000382 INF: Autofocus start
17-03-17 23:14:58.218 -07 000000382 INF: MeasureProfile start
17-03-17 23:14:58.218 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:14:58.218 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:14:58.228 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:14:58.228 -07 000000547 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:14:58.238 -07 000000382 INF: MeasureProfile done
17-03-17 23:14:58.238 -07 000000382 INF: X=16  Z correction [um]=0.0530179
17-03-17 23:14:58.238 -07 000000382 INF: Autofocus finished
17-03-17 23:14:58.428 -07 000000623 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:14:58.428 -07 000000547 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 23:14:58.428 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.138401084978051. ----------
17-03-17 23:14:58.438 -07 000000610 INF: Cycle	73	Tile	6	Exposure Settings		A	470	G	226	T	226	C	470
17-03-17 23:14:58.438 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28758, sync = True, waitForSettling = True)
17-03-17 23:14:58.438 -07 000000610 INF: Z Motor: Moving to -0.131646 mm, started at -0.138401 mm, distance = 6.76 um
17-03-17 23:14:58.438 -07 000000610 INF: FPGA: Xmit ZDACW 28758\n [Z Motor]
17-03-17 23:14:58.438 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 23:14:58.448 -07 000000610 INF: FPGA: 'ZDACW 28758' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:14:58.448 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:14:58.448 -07 000000561 INF: FPGA: Recv ZDACR 28758
17-03-17 23:14:58.458 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:58.458 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:14:58.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:58.608 -07 000000415 INF: FPGA: Recv ZSGSRD 29788
17-03-17 23:14:58.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:14:58.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:58.618 -07 000000627 INF: FPGA: Recv ZSGSRD 29782
17-03-17 23:14:58.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:58.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:58.628 -07 000000547 INF: FPGA: Recv ZSGSRD 29775
17-03-17 23:14:58.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:58.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:58.638 -07 000000482 INF: FPGA: Recv ZSGSRD 29785
17-03-17 23:14:58.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:58.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:58.648 -07 000000409 INF: FPGA: Recv ZSGSRD 29780
17-03-17 23:14:58.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:58.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:58.658 -07 000000415 INF: FPGA: Recv ZSGSRD 29785
17-03-17 23:14:58.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:58.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:58.668 -07 000000561 INF: FPGA: Recv ZSGSRD 29788
17-03-17 23:14:58.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:58.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:58.678 -07 000000541 INF: FPGA: Recv ZSGSRD 29775
17-03-17 23:14:58.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:58.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:58.688 -07 000000429 INF: FPGA: Recv ZSGSRD 29791
17-03-17 23:14:58.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:58.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:14:58.698 -07 000000501 INF: FPGA: Recv ZSGSRD 29781
17-03-17 23:14:58.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:58.708 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:14:58.708 -07 000000448 INF: FPGA: Recv ZPIEZORD 25368
17-03-17 23:14:58.718 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:14:58.718 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.388 V. Piezo Error = -9.7 V.
17-03-17 23:14:58.718 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.6 um, Read 10 ADC samples: Avg = 29783 (-130.9 uncal um), Error = 0.8 uncal um, Median = 29784 (-130.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29775 (-130.8 uncal um), Max = 29791 (-130.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 23:14:58.718 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29783, posNoise = 8, negNoise = 8
17-03-17 23:14:58.718 -07 000000610 INF: Z Motor: After move to -0.131646, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:14:58.718 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 23:14:58.718 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:14:58.718 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:14:58.718 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:14:58.718 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:14:58.718 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:14:58.718 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:14:58.718 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:14:58.718 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:14:58.718 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 23:14:58.718 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:14:58.718 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:14:58.718 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:14:58.728 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 23:14:58.728 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 23:14:58.728 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:14:58.728 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:14:58.738 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 23:14:58.738 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 23:14:58.738 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 23:14:58.738 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 23:14:58.738 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 470 470 226 226 28935 150\n [Camera]
17-03-17 23:14:58.938 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:14:59.378 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 73, FrontChillerTemperature: 4.008536,
17-03-17 23:14:59.408 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 662
17-03-17 23:14:59.408 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 662
17-03-17 23:14:59.408 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:14:59.408 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 662
17-03-17 23:14:59.408 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 662
17-03-17 23:14:59.408 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:14:59.408 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:14:59.408 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 23:14:59.418 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:14:59.418 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2602438304, 0x0, 418435064) start.
17-03-17 23:14:59.598 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28935 855
17-03-17 23:14:59.748 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1005
17-03-17 23:14:59.788 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 23:14:59.788 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 23:14:59.788 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:14:59.898 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2602438304, 0x0, 418435064) end. Duration was 480 ms.
17-03-17 23:14:59.898 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 480 ms.
17-03-17 23:14:59.898 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:14:59.898 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 112 ms.
17-03-17 23:14:59.898 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 492 ms.
17-03-17 23:14:59.898 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:14:59.908 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 497 ms.
17-03-17 23:14:59.978 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1231
17-03-17 23:14:59.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1231
17-03-17 23:14:59.978 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:14:59.978 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1231
17-03-17 23:14:59.978 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1231
17-03-17 23:14:59.978 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:14:59.988 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:14:59.988 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 23:14:59.988 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:14:59.988 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 23:15:00.168 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1424
17-03-17 23:15:00.168 -07 000000547 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:15:00.168 -07 000000610 INF: FPGA: 'CAMDBLSNAP 470 470 226 226 28935 150' command took 2 ms to send, 1423 ms to get response, and 1430 ms overall
17-03-17 23:15:00.168 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:15:00.168 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05712890625, Z-Position -0.131655662229202. ------
17-03-17 23:15:00.168 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:15:00.168 -07 000000593 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13800 mm
17-03-17 23:15:00.168 -07 000000593 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:15:00.178 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:15:00.178 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 4 ms overall
17-03-17 23:15:00.178 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:15:00.178 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 30147, sync = True, waitForSettling = False)
17-03-17 23:15:00.178 -07 000000618 INF: Z Motor: Moving to -0.138004 mm, started at -0.131656 mm, distance = -6.35 um
17-03-17 23:15:00.178 -07 000000409 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 23:15:00.178 -07 000000409 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-17 23:15:00.188 -07 000000618 INF: FPGA: Xmit ZDACW 30147\n [Z Motor]
17-03-17 23:15:00.188 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 23:15:00.198 -07 000000618 INF: FPGA: 'ZDACW 30147' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 23:15:00.198 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:15:00.198 -07 000000502 INF: FPGA: Recv YRDPOS 131189
17-03-17 23:15:00.208 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 23:15:00.208 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:15:00.208 -07 000000409 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:15:00.208 -07 000000409 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:15:00.208 -07 000000409 INF: Y Motor: Moving 1337 steps-11
17-03-17 23:15:00.208 -07 000000415 INF: FPGA: Recv ZDACR 30147
17-03-17 23:15:00.218 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:15:00.218 -07 000000618 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-17 23:15:00.218 -07 000000409 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:15:00.378 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 23:15:00.378 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 23:15:00.378 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:15:00.378 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 23:15:00.378 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 23:15:00.378 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:15:00.378 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:15:00.378 -07 000000551 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:15:00.378 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 202 ms overall
17-03-17 23:15:00.378 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:15:00.378 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 23:15:00.388 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 23:15:00.598 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-17 23:15:00.598 -07 000000409 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 389 ms overall
17-03-17 23:15:00.638 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:15:00.638 -07 000000415 INF: FPGA: Recv YRDPOS 132872
17-03-17 23:15:00.648 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:15:00.648 -07 000000409 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:15:00.648 -07 000000409 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 23:15:00.648 -07 000000409 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 389 ms, distance = 0.835 mm, average velocity = 2.148 mm/sec
17-03-17 23:15:01.598 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:15:01.598 -07 000000478 INF: FPGA: Recv YRDPOS 132872
17-03-17 23:15:01.608 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:15:01.608 -07 000000409 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:15:01.628 -07 000000409 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:15:01.628 -07 000000409 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:15:01.628 -07 000000409 INF: Y Motor: Moved to 64.8789 after 1451 ms (table move)
17-03-17 23:15:01.628 -07 000000593 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138004 mm (DAC = 30147)
17-03-17 23:15:01.628 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:01.638 -07 000000475 INF: FPGA: Recv ZSGSRD 30778
17-03-17 23:15:01.638 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 23:15:01.638 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:01.638 -07 000000627 INF: FPGA: Recv ZSGSRD 30770
17-03-17 23:15:01.648 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:15:01.648 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:01.648 -07 000000547 INF: FPGA: Recv ZSGSRD 30771
17-03-17 23:15:01.658 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:01.658 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:01.658 -07 000000623 INF: FPGA: Recv ZSGSRD 30762
17-03-17 23:15:01.668 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:01.668 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:01.668 -07 000000551 INF: FPGA: Recv ZSGSRD 30778
17-03-17 23:15:01.678 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:01.678 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:01.678 -07 000000576 INF: FPGA: Recv ZSGSRD 30780
17-03-17 23:15:01.688 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:01.688 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:01.688 -07 000000501 INF: FPGA: Recv ZSGSRD 30768
17-03-17 23:15:01.698 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:01.698 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:01.698 -07 000000547 INF: FPGA: Recv ZSGSRD 30767
17-03-17 23:15:01.708 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:01.708 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:01.708 -07 000000478 INF: FPGA: Recv ZSGSRD 30771
17-03-17 23:15:01.718 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:01.718 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:01.718 -07 000000561 INF: FPGA: Recv ZSGSRD 30772
17-03-17 23:15:01.728 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:01.728 -07 000000593 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:15:01.728 -07 000000382 INF: FPGA: Recv ZPIEZORD 26696
17-03-17 23:15:01.738 -07 000000593 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:01.738 -07 000000593 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.600 V. Piezo Error = -9.0 V.
17-03-17 23:15:01.738 -07 000000593 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.0 um, Read 10 ADC samples: Avg = 30772 (-137.2 uncal um), Error = 0.8 uncal um, Median = 30771 (-137.2 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30762 (-137.1 uncal um), Max = 30780 (-137.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 23:15:01.738 -07 000000593 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30772, posNoise = 8, negNoise = 10
17-03-17 23:15:01.738 -07 000000593 INF: Z Motor: After move to -0.138004, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:15:01.738 -07 000000593 INF: Z Motor: Settle wait time = 1455 ms, measure time = 101 ms (allowed 150 ms), total time = 1556 ms
17-03-17 23:15:01.738 -07 000000593 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 23:15:01.788 -07 000000593 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1611 ms
17-03-17 23:15:01.788 -07 000000593 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:15:01.788 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:15:01.788 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:15:01.788 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:15:01.788 -07 000000409 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:15:01.788 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:15:01.788 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:15:01.788 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:15:01.788 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:15:01.798 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:15:01.798 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:15:01.808 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 23:15:01.808 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 23:15:01.808 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:15:01.858 -07 000000409 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:15:02.048 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:15:02.048 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 72. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1154, R2=1202, Total=2356. Warn if over 250 bubbles per interval.
17-03-17 23:15:02.058 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:15:02.058 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:15:02.058 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:15:02.058 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2468220576, 0x0, 559484976) start.
17-03-17 23:15:02.098 -07 000000382 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:15:02.098 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-17 23:15:02.098 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 23:15:02.178 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2468220576, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 23:15:02.178 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:15:02.178 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:15:02.178 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-17 23:15:02.198 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:15:02.198 -07 000000501 INF: Autofocus start
17-03-17 23:15:02.198 -07 000000501 INF: MeasureProfile start
17-03-17 23:15:02.198 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:15:02.208 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:15:02.208 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:15:02.208 -07 000000501 INF: MeasureProfile done
17-03-17 23:15:02.208 -07 000000501 INF: X=0  Z correction [um]=-0.02394831
17-03-17 23:15:02.208 -07 000000501 INF: Autofocus finished
17-03-17 23:15:02.408 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:15:02.408 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:15:02.408 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.138009208037403. ----------
17-03-17 23:15:02.408 -07 000000610 INF: Cycle	73	Tile	7	Exposure Settings		A	470	G	226	T	226	C	470
17-03-17 23:15:02.418 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28654, sync = True, waitForSettling = True)
17-03-17 23:15:02.418 -07 000000610 INF: Z Motor: Moving to -0.131170 mm, started at -0.138009 mm, distance = 6.84 um
17-03-17 23:15:02.418 -07 000000610 INF: FPGA: Xmit ZDACW 28654\n [Z Motor]
17-03-17 23:15:02.418 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 23:15:02.428 -07 000000610 INF: FPGA: 'ZDACW 28654' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:15:02.428 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:15:02.428 -07 000000429 INF: FPGA: Recv ZDACR 28654
17-03-17 23:15:02.438 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:02.438 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:15:02.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:02.588 -07 000000501 INF: FPGA: Recv ZSGSRD 29709
17-03-17 23:15:02.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:15:02.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:02.598 -07 000000547 INF: FPGA: Recv ZSGSRD 29709
17-03-17 23:15:02.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:02.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:02.608 -07 000000478 INF: FPGA: Recv ZSGSRD 29711
17-03-17 23:15:02.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:02.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:02.618 -07 000000593 INF: FPGA: Recv ZSGSRD 29712
17-03-17 23:15:02.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:02.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:02.628 -07 000000576 INF: FPGA: Recv ZSGSRD 29705
17-03-17 23:15:02.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:02.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:02.638 -07 000000627 INF: FPGA: Recv ZSGSRD 29711
17-03-17 23:15:02.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:02.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:02.648 -07 000000409 INF: FPGA: Recv ZSGSRD 29705
17-03-17 23:15:02.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:02.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:02.658 -07 000000462 INF: FPGA: Recv ZSGSRD 29705
17-03-17 23:15:02.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:02.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:02.668 -07 000000561 INF: FPGA: Recv ZSGSRD 29707
17-03-17 23:15:02.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:02.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:02.678 -07 000000623 INF: FPGA: Recv ZSGSRD 29712
17-03-17 23:15:02.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:02.688 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:15:02.688 -07 000000593 INF: FPGA: Recv ZPIEZORD 25287
17-03-17 23:15:02.698 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:02.698 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.372 V. Piezo Error = -9.7 V.
17-03-17 23:15:02.698 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.2 um, Read 10 ADC samples: Avg = 29709 (-130.4 uncal um), Error = 0.8 uncal um, Median = 29709 (-130.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29705 (-130.4 uncal um), Max = 29712 (-130.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:15:02.698 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29709, posNoise = 3, negNoise = 4
17-03-17 23:15:02.698 -07 000000610 INF: Z Motor: After move to -0.131170, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:15:02.698 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 23:15:02.698 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:15:02.698 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:15:02.698 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:15:02.698 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:15:02.698 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:15:02.698 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:15:02.698 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:15:02.698 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:15:02.698 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:15:02.698 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:15:02.698 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:15:02.698 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:15:02.708 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:15:02.708 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:15:02.708 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:15:02.708 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:15:02.718 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 23:15:02.718 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 23:15:02.718 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 23:15:02.718 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 23:15:02.718 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 470 470 226 226 28831 150\n [Camera]
17-03-17 23:15:02.918 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:15:03.388 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 662
17-03-17 23:15:03.388 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 662
17-03-17 23:15:03.388 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:15:03.398 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 662
17-03-17 23:15:03.398 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 662
17-03-17 23:15:03.398 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:15:03.398 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2482896656, 0x0, 391868352) start.
17-03-17 23:15:03.398 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:15:03.398 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:15:03.398 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 23:15:03.578 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28831 855
17-03-17 23:15:03.728 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1005
17-03-17 23:15:03.768 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2482896656, 0x0, 391868352) end. Duration was 374 ms.
17-03-17 23:15:03.768 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-17 23:15:03.768 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:15:03.768 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 23:15:03.768 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 23:15:03.768 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:15:03.778 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:15:03.778 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 23:15:03.778 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:15:03.788 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 23:15:03.958 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1231
17-03-17 23:15:03.958 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1231
17-03-17 23:15:03.958 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:15:03.958 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:15:03.958 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-17 23:15:03.958 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1231
17-03-17 23:15:03.958 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1231
17-03-17 23:15:03.968 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:15:03.968 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:15:03.968 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-17 23:15:04.148 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1423
17-03-17 23:15:04.148 -07 000000623 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:15:04.148 -07 000000610 INF: FPGA: 'CAMDBLSNAP 470 470 226 226 28831 150' command took 2 ms to send, 1426 ms to get response, and 1431 ms overall
17-03-17 23:15:04.148 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:15:04.148 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87890625, Z-Position -0.131180270530711. ------
17-03-17 23:15:04.158 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:15:04.158 -07 000000593 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13780 mm
17-03-17 23:15:04.158 -07 000000593 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:15:04.158 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:15:04.158 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 30103, sync = True, waitForSettling = False)
17-03-17 23:15:04.158 -07 000000382 INF: Z Motor: Moving to -0.137803 mm, started at -0.131180 mm, distance = -6.62 um
17-03-17 23:15:04.158 -07 000000415 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 23:15:04.158 -07 000000415 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm
17-03-17 23:15:04.168 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:15:04.168 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:15:04.168 -07 000000623 INF: FPGA: Recv YRDPOS 132872
17-03-17 23:15:04.178 -07 000000382 INF: FPGA: Xmit ZDACW 30103\n [Z Motor]
17-03-17 23:15:04.178 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 23:15:04.178 -07 000000415 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:15:04.178 -07 000000415 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:15:04.178 -07 000000415 INF: Y Motor: Moving 1350 steps-28
17-03-17 23:15:04.178 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 23:15:04.188 -07 000000547 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:15:04.188 -07 000000382 INF: FPGA: 'ZDACW 30103' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 23:15:04.198 -07 000000415 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:15:04.208 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:15:04.208 -07 000000501 INF: FPGA: Recv ZDACR 30103
17-03-17 23:15:04.218 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:15:04.218 -07 000000382 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 23:15:04.348 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 23:15:04.348 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 23:15:04.348 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:15:04.358 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:15:04.358 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 23:15:04.358 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 23:15:04.358 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:15:04.358 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:15:04.358 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 23:15:04.368 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 23:15:04.388 -07 000000448 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:15:04.388 -07 000000547 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 23:15:04.568 -07 000000475 INF: FPGA: Recv YMVTILE
17-03-17 23:15:04.568 -07 000000415 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 23:15:04.618 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:15:04.618 -07 000000627 INF: FPGA: Recv YRDPOS 134582
17-03-17 23:15:04.628 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:04.628 -07 000000415 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:15:04.628 -07 000000415 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 23:15:04.628 -07 000000415 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.125 mm/sec
17-03-17 23:15:04.748 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 73, FrontChillerTemperature: 3.993549,
17-03-17 23:15:05.578 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:15:05.578 -07 000000561 INF: FPGA: Recv YRDPOS 134583
17-03-17 23:15:05.588 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:15:05.588 -07 000000415 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:15:05.608 -07 000000415 INF: Y Motor: After move to 65.722610, error = -0.008255, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:15:05.608 -07 000000415 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 23:15:05.608 -07 000000415 INF: Y Motor: Moved to 65.7144 after 1451 ms (table move)
17-03-17 23:15:05.618 -07 000000593 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137803 mm (DAC = 30103)
17-03-17 23:15:05.618 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:05.618 -07 000000551 INF: FPGA: Recv ZSGSRD 30743
17-03-17 23:15:05.628 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:15:05.628 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:05.628 -07 000000409 INF: FPGA: Recv ZSGSRD 30750
17-03-17 23:15:05.638 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:05.638 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:05.638 -07 000000623 INF: FPGA: Recv ZSGSRD 30739
17-03-17 23:15:05.648 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:05.648 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:05.648 -07 000000561 INF: FPGA: Recv ZSGSRD 30742
17-03-17 23:15:05.658 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:05.658 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:05.658 -07 000000502 INF: FPGA: Recv ZSGSRD 30737
17-03-17 23:15:05.668 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:05.668 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:05.668 -07 000000576 INF: FPGA: Recv ZSGSRD 30738
17-03-17 23:15:05.678 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:05.678 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:05.678 -07 000000409 INF: FPGA: Recv ZSGSRD 30740
17-03-17 23:15:05.688 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:05.688 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:05.688 -07 000000618 INF: FPGA: Recv ZSGSRD 30734
17-03-17 23:15:05.698 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:05.698 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:05.698 -07 000000409 INF: FPGA: Recv ZSGSRD 30737
17-03-17 23:15:05.708 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:05.708 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:05.708 -07 000000551 INF: FPGA: Recv ZSGSRD 30749
17-03-17 23:15:05.718 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:05.718 -07 000000593 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:15:05.718 -07 000000547 INF: FPGA: Recv ZPIEZORD 26720
17-03-17 23:15:05.728 -07 000000593 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:05.728 -07 000000593 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.593 V. Piezo Error = -8.9 V.
17-03-17 23:15:05.728 -07 000000593 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.8 um, Read 10 ADC samples: Avg = 30741 (-137.0 uncal um), Error = 0.8 uncal um, Median = 30740 (-137.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30734 (-137.0 uncal um), Max = 30750 (-137.1 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 23:15:05.728 -07 000000593 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30741, posNoise = 9, negNoise = 7
17-03-17 23:15:05.728 -07 000000593 INF: Z Motor: After move to -0.137803, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:15:05.728 -07 000000593 INF: Z Motor: Settle wait time = 1455 ms, measure time = 108 ms (allowed 150 ms), total time = 1563 ms
17-03-17 23:15:05.728 -07 000000593 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 23:15:05.778 -07 000000593 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1617 ms
17-03-17 23:15:05.778 -07 000000593 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:15:05.778 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:15:05.778 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:15:05.778 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:15:05.778 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:15:05.778 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:15:05.778 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:15:05.778 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:15:05.778 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:15:05.788 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:15:05.788 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:15:05.798 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 23:15:05.798 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 23:15:05.798 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:15:05.848 -07 000000482 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:15:06.048 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:15:06.048 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:15:06.048 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:15:06.048 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) start.
17-03-17 23:15:06.088 -07 000000486 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:15:06.088 -07 000000409 INF: FPGA: Recv CAMSNAP
17-03-17 23:15:06.088 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 23:15:06.178 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 23:15:06.178 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:15:06.178 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:15:06.178 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 23:15:06.188 -07 000000593 INF: Autofocus start
17-03-17 23:15:06.188 -07 000000593 INF: MeasureProfile start
17-03-17 23:15:06.188 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:15:06.188 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:15:06.198 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:15:06.198 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:15:06.198 -07 000000593 INF: MeasureProfile done
17-03-17 23:15:06.198 -07 000000593 INF: X=0  Z correction [um]=-0.02394831
17-03-17 23:15:06.198 -07 000000593 INF: Autofocus finished
17-03-17 23:15:06.398 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:15:06.398 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:15:06.398 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71435546875, Z-position -0.137810057461009. ----------
17-03-17 23:15:06.398 -07 000000610 INF: Cycle	73	Tile	8	Exposure Settings		A	470	G	226	T	226	C	470
17-03-17 23:15:06.408 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28610, sync = True, waitForSettling = True)
17-03-17 23:15:06.408 -07 000000610 INF: Z Motor: Moving to -0.130968 mm, started at -0.137810 mm, distance = 6.84 um
17-03-17 23:15:06.408 -07 000000610 INF: FPGA: Xmit ZDACW 28610\n [Z Motor]
17-03-17 23:15:06.408 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 23:15:06.418 -07 000000610 INF: FPGA: 'ZDACW 28610' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:06.418 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:15:06.418 -07 000000501 INF: FPGA: Recv ZDACR 28610
17-03-17 23:15:06.428 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:06.428 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:15:06.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:06.578 -07 000000593 INF: FPGA: Recv ZSGSRD 29678
17-03-17 23:15:06.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:15:06.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:06.588 -07 000000429 INF: FPGA: Recv ZSGSRD 29679
17-03-17 23:15:06.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:06.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:06.598 -07 000000502 INF: FPGA: Recv ZSGSRD 29681
17-03-17 23:15:06.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:06.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:06.608 -07 000000593 INF: FPGA: Recv ZSGSRD 29680
17-03-17 23:15:06.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:06.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:06.618 -07 000000409 INF: FPGA: Recv ZSGSRD 29678
17-03-17 23:15:06.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:06.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:06.628 -07 000000501 INF: FPGA: Recv ZSGSRD 29671
17-03-17 23:15:06.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:06.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:06.638 -07 000000482 INF: FPGA: Recv ZSGSRD 29683
17-03-17 23:15:06.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:06.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:06.648 -07 000000501 INF: FPGA: Recv ZSGSRD 29680
17-03-17 23:15:06.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:06.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:06.658 -07 000000462 INF: FPGA: Recv ZSGSRD 29679
17-03-17 23:15:06.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:06.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:06.668 -07 000000475 INF: FPGA: Recv ZSGSRD 29675
17-03-17 23:15:06.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:06.678 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:15:06.678 -07 000000462 INF: FPGA: Recv ZPIEZORD 25285
17-03-17 23:15:06.688 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:06.688 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.366 V. Piezo Error = -9.6 V.
17-03-17 23:15:06.688 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.0 um, Read 10 ADC samples: Avg = 29678 (-130.2 uncal um), Error = 0.8 uncal um, Median = 29679 (-130.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29671 (-130.2 uncal um), Max = 29683 (-130.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 23:15:06.688 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29678, posNoise = 5, negNoise = 7
17-03-17 23:15:06.688 -07 000000610 INF: Z Motor: After move to -0.130968, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:15:06.688 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 23:15:06.688 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:15:06.688 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:15:06.688 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:15:06.688 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:15:06.688 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:15:06.688 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:15:06.688 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:15:06.688 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:15:06.688 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 23:15:06.688 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:15:06.688 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:15:06.688 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:15:06.698 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 23:15:06.698 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:15:06.698 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 23:15:06.698 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:15:06.708 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 23:15:06.708 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 23:15:06.708 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 23:15:06.708 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 23:15:06.718 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 470 470 226 226 28787 150\n [Camera]
17-03-17 23:15:06.908 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:15:07.048 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:15:07.048 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 72. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1154, R2=1202, Total=2356. Warn if over 250 bubbles per interval.
17-03-17 23:15:07.388 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 662
17-03-17 23:15:07.388 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 662
17-03-17 23:15:07.388 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:15:07.388 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:15:07.388 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 23:15:07.388 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 662
17-03-17 23:15:07.388 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 662
17-03-17 23:15:07.388 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:15:07.388 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:15:07.388 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 23:15:07.578 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28787 855
17-03-17 23:15:07.728 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1005
17-03-17 23:15:07.758 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 23:15:07.758 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 23:15:07.758 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:15:07.758 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:15:07.768 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 23:15:07.768 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 23:15:07.768 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:15:07.768 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:15:07.768 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 23:15:07.768 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 23:15:07.948 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1231
17-03-17 23:15:07.948 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1231
17-03-17 23:15:07.958 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:15:07.958 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1231
17-03-17 23:15:07.958 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:15:07.958 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 23:15:07.958 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1231
17-03-17 23:15:07.958 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:15:07.958 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:15:07.958 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 23:15:08.148 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP 1424
17-03-17 23:15:08.148 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:15:08.148 -07 000000610 INF: FPGA: 'CAMDBLSNAP 470 470 226 226 28787 150' command took 2 ms to send, 1421 ms to get response, and 1431 ms overall
17-03-17 23:15:08.148 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:15:08.148 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71435546875, Z-Position -0.130981119954317. ------
17-03-17 23:15:08.148 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:15:08.148 -07 000000429 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13731 mm
17-03-17 23:15:08.148 -07 000000429 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:15:08.148 -07 000000593 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 23:15:08.148 -07 000000593 INF: Y Motor: Moving to 66.5526 mm, started at 65.7144 mm, delta = 0.8382 mm
17-03-17 23:15:08.148 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 29996, sync = True, waitForSettling = False)
17-03-17 23:15:08.148 -07 000000462 INF: Z Motor: Moving to -0.137313 mm, started at -0.130981 mm, distance = -6.33 um
17-03-17 23:15:08.148 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:15:08.158 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:15:08.158 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:15:08.158 -07 000000486 INF: FPGA: Recv YRDPOS 134583
17-03-17 23:15:08.168 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 23:15:08.168 -07 000000593 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:15:08.168 -07 000000593 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:15:08.168 -07 000000593 INF: Y Motor: Moving 1341 steps-18
17-03-17 23:15:08.168 -07 000000547 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:15:08.178 -07 000000462 INF: FPGA: Xmit ZDACW 29996\n [Z Motor]
17-03-17 23:15:08.178 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 23:15:08.188 -07 000000593 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:15:08.188 -07 000000462 INF: FPGA: 'ZDACW 29996' command took 2 ms to send, 0 ms to get response, and 31 ms overall
17-03-17 23:15:08.198 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:15:08.198 -07 000000502 INF: FPGA: Recv ZDACR 29996
17-03-17 23:15:08.208 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:15:08.208 -07 000000462 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 23:15:08.348 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 23:15:08.348 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 23:15:08.348 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:15:08.348 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 23:15:08.348 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 23:15:08.348 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:15:08.358 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:15:08.358 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 23:15:08.358 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:15:08.358 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 23:15:08.368 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:15:08.368 -07 000000547 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 194 ms to get response, and 213 ms overall
17-03-17 23:15:08.558 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 23:15:08.558 -07 000000593 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 23:15:08.608 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:15:08.608 -07 000000502 INF: FPGA: Recv YRDPOS 136272
17-03-17 23:15:08.618 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:15:08.618 -07 000000593 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:15:08.618 -07 000000593 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 23:15:08.618 -07 000000593 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.111 mm/sec
17-03-17 23:15:09.568 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:15:09.568 -07 000000501 INF: FPGA: Recv YRDPOS 136272
17-03-17 23:15:09.578 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:15:09.578 -07 000000593 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:15:09.598 -07 000000593 INF: Y Motor: After move to 66.552605, error = -0.013542, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:15:09.598 -07 000000593 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:15:09.598 -07 000000593 INF: Y Motor: Moved to 66.5391 after 1449 ms (table move)
17-03-17 23:15:09.608 -07 000000429 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137313 mm (DAC = 29996)
17-03-17 23:15:09.608 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:09.608 -07 000000501 INF: FPGA: Recv ZSGSRD 30658
17-03-17 23:15:09.618 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:09.618 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:09.618 -07 000000547 INF: FPGA: Recv ZSGSRD 30662
17-03-17 23:15:09.628 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:09.628 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:09.628 -07 000000618 INF: FPGA: Recv ZSGSRD 30672
17-03-17 23:15:09.638 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:09.638 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:09.638 -07 000000541 INF: FPGA: Recv ZSGSRD 30668
17-03-17 23:15:09.648 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:09.648 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:09.648 -07 000000478 INF: FPGA: Recv ZSGSRD 30667
17-03-17 23:15:09.658 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:09.658 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:09.658 -07 000000561 INF: FPGA: Recv ZSGSRD 30661
17-03-17 23:15:09.668 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:09.668 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:09.668 -07 000000462 INF: FPGA: Recv ZSGSRD 30658
17-03-17 23:15:09.678 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:09.678 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:09.678 -07 000000415 INF: FPGA: Recv ZSGSRD 30670
17-03-17 23:15:09.688 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:09.688 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:09.688 -07 000000502 INF: FPGA: Recv ZSGSRD 30660
17-03-17 23:15:09.698 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:09.698 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:09.698 -07 000000475 INF: FPGA: Recv ZSGSRD 30672
17-03-17 23:15:09.708 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:09.708 -07 000000429 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:15:09.708 -07 000000501 INF: FPGA: Recv ZPIEZORD 26579
17-03-17 23:15:09.718 -07 000000429 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:09.718 -07 000000429 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.577 V. Piezo Error = -9.0 V.
17-03-17 23:15:09.718 -07 000000429 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.3 um, Read 10 ADC samples: Avg = 30665 (-136.5 uncal um), Error = 0.8 uncal um, Median = 30664 (-136.5 uncal um), StdDev = 6 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30658 (-136.5 uncal um), Max = 30672 (-136.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 23:15:09.718 -07 000000429 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30665, posNoise = 7, negNoise = 7
17-03-17 23:15:09.718 -07 000000429 INF: Z Motor: After move to -0.137313, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:15:09.718 -07 000000429 INF: Z Motor: Settle wait time = 1452 ms, measure time = 109 ms (allowed 150 ms), total time = 1561 ms
17-03-17 23:15:09.718 -07 000000429 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 23:15:09.768 -07 000000429 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1614 ms
17-03-17 23:15:09.768 -07 000000429 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:15:09.768 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:15:09.768 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:15:09.768 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:15:09.768 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:15:09.768 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:15:09.768 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:15:09.768 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:15:09.768 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:15:09.778 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:15:09.778 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:15:09.788 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 23:15:09.788 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 23:15:09.788 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:15:09.838 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:15:10.038 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:15:10.038 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:15:10.038 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:15:10.038 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 674752456, 0x0, 559484976) start.
17-03-17 23:15:10.078 -07 000000593 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:15:10.078 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-17 23:15:10.078 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 284 ms to get response, and 288 ms overall
17-03-17 23:15:10.118 -07 000000593 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 73, FrontChillerTemperature: 4.009895,
17-03-17 23:15:10.158 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 674752456, 0x0, 559484976) end. Duration was 122 ms.
17-03-17 23:15:10.158 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:15:10.158 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:15:10.158 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-17 23:15:10.178 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:15:10.178 -07 000000541 INF: Autofocus start
17-03-17 23:15:10.178 -07 000000541 INF: MeasureProfile start
17-03-17 23:15:10.178 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:15:10.188 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:15:10.188 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:15:10.188 -07 000000541 INF: MeasureProfile done
17-03-17 23:15:10.188 -07 000000541 INF: X=16  Z correction [um]=0.0530179
17-03-17 23:15:10.188 -07 000000541 INF: Autofocus finished
17-03-17 23:15:10.388 -07 000000593 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:15:10.388 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:15:10.388 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5390625, Z-position -0.137321817338235. ----------
17-03-17 23:15:10.398 -07 000000610 INF: Cycle	73	Tile	9	Exposure Settings		A	470	G	226	T	226	C	470
17-03-17 23:15:10.398 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28520, sync = True, waitForSettling = True)
17-03-17 23:15:10.398 -07 000000610 INF: Z Motor: Moving to -0.130556 mm, started at -0.137322 mm, distance = 6.77 um
17-03-17 23:15:10.398 -07 000000610 INF: FPGA: Xmit ZDACW 28520\n [Z Motor]
17-03-17 23:15:10.398 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 23:15:10.408 -07 000000610 INF: FPGA: 'ZDACW 28520' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:15:10.408 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:15:10.408 -07 000000409 INF: FPGA: Recv ZDACR 28520
17-03-17 23:15:10.418 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:10.418 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:15:10.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:10.568 -07 000000547 INF: FPGA: Recv ZSGSRD 29615
17-03-17 23:15:10.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:15:10.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:10.578 -07 000000561 INF: FPGA: Recv ZSGSRD 29613
17-03-17 23:15:10.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:10.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:10.588 -07 000000448 INF: FPGA: Recv ZSGSRD 29615
17-03-17 23:15:10.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:10.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:10.598 -07 000000576 INF: FPGA: Recv ZSGSRD 29612
17-03-17 23:15:10.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:10.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:10.608 -07 000000409 INF: FPGA: Recv ZSGSRD 29610
17-03-17 23:15:10.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:10.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:10.618 -07 000000547 INF: FPGA: Recv ZSGSRD 29615
17-03-17 23:15:10.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:10.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:10.628 -07 000000486 INF: FPGA: Recv ZSGSRD 29612
17-03-17 23:15:10.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:10.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:10.638 -07 000000448 INF: FPGA: Recv ZSGSRD 29612
17-03-17 23:15:10.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:10.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:10.648 -07 000000576 INF: FPGA: Recv ZSGSRD 29613
17-03-17 23:15:10.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:10.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:10.658 -07 000000409 INF: FPGA: Recv ZSGSRD 29612
17-03-17 23:15:10.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:10.668 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:15:10.668 -07 000000547 INF: FPGA: Recv ZPIEZORD 25221
17-03-17 23:15:10.678 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:10.678 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.352 V. Piezo Error = -9.6 V.
17-03-17 23:15:10.678 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.6 um, Read 10 ADC samples: Avg = 29613 (-129.8 uncal um), Error = 0.8 uncal um, Median = 29612 (-129.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 29610 (-129.8 uncal um), Max = 29615 (-129.8 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 23:15:10.678 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29613, posNoise = 2, negNoise = 3
17-03-17 23:15:10.678 -07 000000610 INF: Z Motor: After move to -0.130556, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:15:10.678 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 23:15:10.678 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:15:10.678 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:15:10.678 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:15:10.678 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:15:10.678 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:15:10.678 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:15:10.678 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:15:10.678 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:15:10.678 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 23:15:10.678 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:15:10.678 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:15:10.678 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:15:10.688 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:15:10.688 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:15:10.688 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:15:10.688 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:15:10.698 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 23:15:10.698 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:15:10.698 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 23:15:10.698 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:15:10.698 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 470 470 226 226 28697 150\n [Camera]
17-03-17 23:15:10.898 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-17 23:15:11.368 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 662
17-03-17 23:15:11.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 662
17-03-17 23:15:11.368 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:15:11.368 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:15:11.368 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 23:15:11.368 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 662
17-03-17 23:15:11.368 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 662
17-03-17 23:15:11.368 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:15:11.368 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:15:11.368 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 23:15:11.558 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28697 855
17-03-17 23:15:11.708 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1005
17-03-17 23:15:11.748 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 23:15:11.748 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 23:15:11.748 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:15:11.748 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 23:15:11.748 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 23:15:11.748 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:15:11.748 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:15:11.748 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 23:15:11.758 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:15:11.758 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 23:15:11.938 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1231
17-03-17 23:15:11.938 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1231
17-03-17 23:15:11.938 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:15:11.938 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:15:11.938 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 23:15:11.938 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1231
17-03-17 23:15:11.938 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1231
17-03-17 23:15:11.938 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:15:11.938 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:15:11.938 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 23:15:12.048 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:15:12.048 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 72. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1154, R2=1202, Total=2356. Warn if over 250 bubbles per interval.
17-03-17 23:15:12.128 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP 1423
17-03-17 23:15:12.128 -07 000000486 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:15:12.128 -07 000000610 INF: FPGA: 'CAMDBLSNAP 470 470 226 226 28697 150' command took 2 ms to send, 1425 ms to get response, and 1430 ms overall
17-03-17 23:15:12.128 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:15:12.128 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5390625, Z-Position -0.130563546165102. ------
17-03-17 23:15:12.138 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13731 mm
17-03-17 23:15:12.138 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:15:12.138 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:15:12.138 -07 000000409 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 23:15:12.138 -07 000000409 INF: Y Motor: Moving to 67.3826 mm, started at 66.5391 mm, delta = 0.8435 mm
17-03-17 23:15:12.138 -07 000000478 INF: Z Motor: Entering MoveAbsStepped (DAC = 29995, sync = True, waitForSettling = False)
17-03-17 23:15:12.138 -07 000000478 INF: Z Motor: Moving to -0.137308 mm, started at -0.130564 mm, distance = -6.74 um
17-03-17 23:15:12.138 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:15:12.148 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:15:12.148 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:15:12.148 -07 000000551 INF: FPGA: Recv YRDPOS 136272
17-03-17 23:15:12.158 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 23:15:12.158 -07 000000409 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:15:12.158 -07 000000409 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:15:12.158 -07 000000409 INF: Y Motor: Moving 1350 steps-28
17-03-17 23:15:12.158 -07 000000478 INF: FPGA: Xmit ZDACW 29995\n [Z Motor]
17-03-17 23:15:12.158 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 23:15:12.168 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:15:12.168 -07 000000478 INF: FPGA: 'ZDACW 29995' command took 1 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 23:15:12.178 -07 000000409 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:15:12.188 -07 000000478 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:15:12.188 -07 000000502 INF: FPGA: Recv ZDACR 29995
17-03-17 23:15:12.198 -07 000000478 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:15:12.198 -07 000000478 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-17 23:15:12.328 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 23:15:12.328 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 23:15:12.328 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:15:12.328 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 23:15:12.328 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 23:15:12.328 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:15:12.338 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:15:12.338 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 23:15:12.338 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 23:15:12.338 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 23:15:12.368 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:15:12.368 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 23:15:12.548 -07 000000541 INF: FPGA: Recv YMVTILE
17-03-17 23:15:12.548 -07 000000409 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 23:15:12.588 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:15:12.598 -07 000000501 INF: FPGA: Recv YRDPOS 137978
17-03-17 23:15:12.598 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 4 ms to get response, and 5 ms overall
17-03-17 23:15:12.598 -07 000000409 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:15:12.598 -07 000000409 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-17 23:15:12.598 -07 000000409 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.125 mm/sec
17-03-17 23:15:13.548 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:15:13.548 -07 000000462 INF: FPGA: Recv YRDPOS 137978
17-03-17 23:15:13.558 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:15:13.558 -07 000000409 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:15:13.578 -07 000000409 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:15:13.578 -07 000000409 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:15:13.578 -07 000000409 INF: Y Motor: Moved to 67.3721 after 1441 ms (table move)
17-03-17 23:15:13.578 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137308 mm (DAC = 29995)
17-03-17 23:15:13.578 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:13.588 -07 000000551 INF: FPGA: Recv ZSGSRD 30665
17-03-17 23:15:13.598 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:15:13.598 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:13.598 -07 000000576 INF: FPGA: Recv ZSGSRD 30664
17-03-17 23:15:13.608 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:13.608 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:13.608 -07 000000482 INF: FPGA: Recv ZSGSRD 30668
17-03-17 23:15:13.618 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:13.618 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:13.618 -07 000000462 INF: FPGA: Recv ZSGSRD 30669
17-03-17 23:15:13.628 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:13.628 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:13.628 -07 000000475 INF: FPGA: Recv ZSGSRD 30669
17-03-17 23:15:13.638 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:13.638 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:13.638 -07 000000502 INF: FPGA: Recv ZSGSRD 30668
17-03-17 23:15:13.648 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:13.648 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:13.648 -07 000000576 INF: FPGA: Recv ZSGSRD 30660
17-03-17 23:15:13.658 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:13.658 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:13.658 -07 000000482 INF: FPGA: Recv ZSGSRD 30662
17-03-17 23:15:13.668 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:13.668 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:13.668 -07 000000593 INF: FPGA: Recv ZSGSRD 30661
17-03-17 23:15:13.678 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:13.678 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:13.678 -07 000000409 INF: FPGA: Recv ZSGSRD 30669
17-03-17 23:15:13.688 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:13.688 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:15:13.688 -07 000000623 INF: FPGA: Recv ZPIEZORD 26578
17-03-17 23:15:13.698 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:13.698 -07 000000618 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.577 V. Piezo Error = -9.0 V.
17-03-17 23:15:13.698 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.3 um, Read 10 ADC samples: Avg = 30666 (-136.5 uncal um), Error = 0.8 uncal um, Median = 30666 (-136.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30660 (-136.5 uncal um), Max = 30669 (-136.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:15:13.698 -07 000000618 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30666, posNoise = 3, negNoise = 6
17-03-17 23:15:13.698 -07 000000618 INF: Z Motor: After move to -0.137308, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:15:13.698 -07 000000618 INF: Z Motor: Settle wait time = 1444 ms, measure time = 111 ms (allowed 150 ms), total time = 1555 ms
17-03-17 23:15:13.698 -07 000000618 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 23:15:13.738 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1598 ms
17-03-17 23:15:13.738 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:15:13.738 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:15:13.738 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:15:13.738 -07 000000409 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:15:13.738 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:15:13.738 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:15:13.738 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:15:13.738 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:15:13.748 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:15:13.748 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:15:13.748 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:15:13.758 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 23:15:13.758 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 23:15:13.758 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:15:13.808 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:15:14.008 -07 000000547 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:15:14.008 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:15:14.008 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:15:14.008 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2539065104, 0x0, 559484976) start.
17-03-17 23:15:14.048 -07 000000561 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:15:14.048 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-17 23:15:14.048 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 3 ms to send, 281 ms to get response, and 287 ms overall
17-03-17 23:15:14.138 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2539065104, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 23:15:14.138 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:15:14.138 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 23:15:14.138 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 23:15:14.148 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:15:14.148 -07 000000482 INF: Autofocus start
17-03-17 23:15:14.148 -07 000000482 INF: MeasureProfile start
17-03-17 23:15:14.148 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:15:14.158 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:15:14.158 -07 000000486 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:15:14.158 -07 000000482 INF: MeasureProfile done
17-03-17 23:15:14.158 -07 000000482 INF: X=0  Z correction [um]=-0.02394831
17-03-17 23:15:14.158 -07 000000482 INF: Autofocus finished
17-03-17 23:15:14.358 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:15:14.358 -07 000000486 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:15:14.358 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.137328241550377. ----------
17-03-17 23:15:14.358 -07 000000610 INF: Cycle	73	Tile	10	Exposure Settings		A	470	G	226	T	226	C	470
17-03-17 23:15:14.368 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28502, sync = True, waitForSettling = True)
17-03-17 23:15:14.368 -07 000000610 INF: Z Motor: Moving to -0.130474 mm, started at -0.137328 mm, distance = 6.85 um
17-03-17 23:15:14.368 -07 000000610 INF: FPGA: Xmit ZDACW 28502\n [Z Motor]
17-03-17 23:15:14.368 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 23:15:14.378 -07 000000610 INF: FPGA: 'ZDACW 28502' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:14.378 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:15:14.378 -07 000000576 INF: FPGA: Recv ZDACR 28502
17-03-17 23:15:14.388 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:14.388 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:15:14.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:14.538 -07 000000482 INF: FPGA: Recv ZSGSRD 29600
17-03-17 23:15:14.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:15:14.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:14.548 -07 000000551 INF: FPGA: Recv ZSGSRD 29598
17-03-17 23:15:14.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:14.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:14.558 -07 000000593 INF: FPGA: Recv ZSGSRD 29604
17-03-17 23:15:14.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:14.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:14.568 -07 000000627 INF: FPGA: Recv ZSGSRD 29601
17-03-17 23:15:14.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:15:14.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:14.578 -07 000000501 INF: FPGA: Recv ZSGSRD 29598
17-03-17 23:15:14.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:14.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:14.588 -07 000000482 INF: FPGA: Recv ZSGSRD 29602
17-03-17 23:15:14.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:14.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:14.598 -07 000000415 INF: FPGA: Recv ZSGSRD 29600
17-03-17 23:15:14.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:14.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:14.608 -07 000000478 INF: FPGA: Recv ZSGSRD 29601
17-03-17 23:15:14.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:14.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:14.618 -07 000000502 INF: FPGA: Recv ZSGSRD 29598
17-03-17 23:15:14.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:14.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:14.628 -07 000000429 INF: FPGA: Recv ZSGSRD 29593
17-03-17 23:15:14.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:14.638 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:15:14.638 -07 000000482 INF: FPGA: Recv ZPIEZORD 25182
17-03-17 23:15:14.648 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:14.648 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.349 V. Piezo Error = -9.7 V.
17-03-17 23:15:14.648 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.5 um, Read 10 ADC samples: Avg = 29600 (-129.7 uncal um), Error = 0.8 uncal um, Median = 29600 (-129.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29593 (-129.7 uncal um), Max = 29604 (-129.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 23:15:14.648 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29600, posNoise = 4, negNoise = 7
17-03-17 23:15:14.648 -07 000000610 INF: Z Motor: After move to -0.130474, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:15:14.648 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 23:15:14.648 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:15:14.648 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:15:14.648 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:15:14.648 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:15:14.648 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:15:14.648 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:15:14.648 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:15:14.648 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:15:14.648 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:15:14.648 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:15:14.648 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:15:14.648 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:15:14.658 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:15:14.658 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:15:14.658 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 23:15:14.658 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:15:14.658 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 23:15:14.658 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:15:14.658 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 23:15:14.658 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 23:15:14.668 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 470 470 226 226 28679 150\n [Camera]
17-03-17 23:15:14.868 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:15:15.338 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 662
17-03-17 23:15:15.338 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 662
17-03-17 23:15:15.338 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:15:15.338 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:15:15.338 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 23:15:15.338 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 662
17-03-17 23:15:15.338 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 662
17-03-17 23:15:15.338 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:15:15.338 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:15:15.338 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-17 23:15:15.498 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 73, FrontChillerTemperature: 3.997626,
17-03-17 23:15:15.528 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28679 855
17-03-17 23:15:15.678 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1005
17-03-17 23:15:15.718 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 23:15:15.718 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 23:15:15.718 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 23:15:15.718 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 23:15:15.718 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:15:15.718 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:15:15.728 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 23:15:15.728 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 23:15:15.728 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 23:15:15.738 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 23:15:15.908 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1231
17-03-17 23:15:15.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1231
17-03-17 23:15:15.908 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:15:15.908 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:15:15.908 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start.
17-03-17 23:15:15.908 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1231
17-03-17 23:15:15.908 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1231
17-03-17 23:15:15.908 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:15:16.048 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:15:16.048 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 23:15:16.098 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP 1425
17-03-17 23:15:16.098 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:15:16.098 -07 000000610 INF: FPGA: 'CAMDBLSNAP 470 470 226 226 28679 150' command took 2 ms to send, 1426 ms to get response, and 1432 ms overall
17-03-17 23:15:16.098 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:15:16.098 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.3720703125, Z-Position -0.130480031407259. ------
17-03-17 23:15:16.108 -07 000000551 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13691 mm
17-03-17 23:15:16.108 -07 000000551 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:15:16.108 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:15:16.108 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 23:15:16.108 -07 000000541 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm
17-03-17 23:15:16.108 -07 000000547 INF: Z Motor: Entering MoveAbsStepped (DAC = 29907, sync = True, waitForSettling = False)
17-03-17 23:15:16.108 -07 000000547 INF: Z Motor: Moving to -0.136905 mm, started at -0.130480 mm, distance = -6.43 um
17-03-17 23:15:16.108 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:15:16.118 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:15:16.118 -07 000000547 INF: FPGA: Xmit ZDACW 29907\n [Z Motor]
17-03-17 23:15:16.118 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 23:15:16.128 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:15:16.128 -07 000000547 INF: FPGA: 'ZDACW 29907' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 23:15:16.128 -07 000000502 INF: FPGA: Recv YRDPOS 137979
17-03-17 23:15:16.138 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 23:15:16.138 -07 000000541 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:15:16.138 -07 000000482 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:15:16.138 -07 000000541 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:15:16.138 -07 000000541 INF: Y Motor: Moving 1344 steps-22
17-03-17 23:15:16.148 -07 000000547 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:15:16.148 -07 000000561 INF: FPGA: Recv ZDACR 29907
17-03-17 23:15:16.158 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:15:16.158 -07 000000547 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:15:16.158 -07 000000547 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-17 23:15:16.308 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 23:15:16.308 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 23:15:16.308 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:15:16.308 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 23:15:16.308 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 23:15:16.338 -07 000000623 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:15:16.338 -07 000000482 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 23:15:16.428 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 23:15:16.428 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 23:15:16.428 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:15:16.428 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 23:15:16.438 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 526 ms.
17-03-17 23:15:16.528 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 23:15:16.528 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-17 23:15:16.568 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:15:16.578 -07 000000593 INF: FPGA: Recv YRDPOS 139684
17-03-17 23:15:16.578 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 23:15:16.578 -07 000000541 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:15:16.578 -07 000000541 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 23:15:16.578 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.841 mm, average velocity = 2.139 mm/sec
17-03-17 23:15:17.048 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:15:17.048 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 72. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1154, R2=1202, Total=2356. Warn if over 250 bubbles per interval.
17-03-17 23:15:17.528 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:15:17.528 -07 000000429 INF: FPGA: Recv YRDPOS 139684
17-03-17 23:15:17.538 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:15:17.538 -07 000000541 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:15:17.558 -07 000000541 INF: Y Motor: After move to 68.212608, error = -0.007530, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:15:17.558 -07 000000541 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:15:17.558 -07 000000541 INF: Y Motor: Moved to 68.2051 after 1449 ms (table move)
17-03-17 23:15:17.558 -07 000000551 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136905 mm (DAC = 29907)
17-03-17 23:15:17.558 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:17.568 -07 000000502 INF: FPGA: Recv ZSGSRD 30601
17-03-17 23:15:17.568 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 4 ms overall
17-03-17 23:15:17.568 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:17.568 -07 000000478 INF: FPGA: Recv ZSGSRD 30596
17-03-17 23:15:17.578 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:15:17.578 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:17.578 -07 000000561 INF: FPGA: Recv ZSGSRD 30598
17-03-17 23:15:17.588 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:17.588 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:17.588 -07 000000576 INF: FPGA: Recv ZSGSRD 30606
17-03-17 23:15:17.598 -07 000000551 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:17.598 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:17.598 -07 000000462 INF: FPGA: Recv ZSGSRD 30588
17-03-17 23:15:17.608 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:17.608 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:17.608 -07 000000593 INF: FPGA: Recv ZSGSRD 30603
17-03-17 23:15:17.618 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:17.618 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:17.618 -07 000000409 INF: FPGA: Recv ZSGSRD 30601
17-03-17 23:15:17.628 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:17.628 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:17.628 -07 000000501 INF: FPGA: Recv ZSGSRD 30596
17-03-17 23:15:17.638 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:17.638 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:17.638 -07 000000576 INF: FPGA: Recv ZSGSRD 30599
17-03-17 23:15:17.648 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:17.648 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:17.648 -07 000000627 INF: FPGA: Recv ZSGSRD 30597
17-03-17 23:15:17.658 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:17.658 -07 000000551 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:15:17.658 -07 000000561 INF: FPGA: Recv ZPIEZORD 26505
17-03-17 23:15:17.668 -07 000000551 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:17.668 -07 000000551 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.564 V. Piezo Error = -9.0 V.
17-03-17 23:15:17.668 -07 000000551 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.9 um, Read 10 ADC samples: Avg = 30598 (-136.1 uncal um), Error = 0.8 uncal um, Median = 30598 (-136.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30588 (-136.0 uncal um), Max = 30606 (-136.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 23:15:17.668 -07 000000551 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30598, posNoise = 8, negNoise = 10
17-03-17 23:15:17.668 -07 000000551 INF: Z Motor: After move to -0.136905, error = 0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:15:17.668 -07 000000551 INF: Z Motor: Settle wait time = 1451 ms, measure time = 104 ms (allowed 150 ms), total time = 1555 ms
17-03-17 23:15:17.668 -07 000000551 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 23:15:17.718 -07 000000551 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-17 23:15:17.718 -07 000000551 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:15:17.718 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:15:17.718 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:15:17.718 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:15:17.718 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:15:17.718 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:15:17.718 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:15:17.718 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 23:15:17.718 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:15:17.728 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:15:17.728 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:15:17.738 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 23:15:17.738 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 23:15:17.738 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:15:17.788 -07 000000475 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:15:17.978 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:15:17.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:15:17.988 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:15:17.988 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) start.
17-03-17 23:15:18.018 -07 000000415 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:15:18.028 -07 000000593 INF: FPGA: Recv CAMSNAP
17-03-17 23:15:18.028 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 285 ms overall
17-03-17 23:15:18.108 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 23:15:18.108 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:15:18.108 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:15:18.108 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 23:15:18.128 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:15:18.128 -07 000000482 INF: Autofocus start
17-03-17 23:15:18.128 -07 000000482 INF: MeasureProfile start
17-03-17 23:15:18.128 -07 000000409 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:15:18.138 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:15:18.138 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:15:18.138 -07 000000482 INF: MeasureProfile done
17-03-17 23:15:18.138 -07 000000482 INF: X=16  Z correction [um]=0.0530179
17-03-17 23:15:18.138 -07 000000482 INF: Autofocus finished
17-03-17 23:15:18.338 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:15:18.338 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:15:18.338 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.205078125, Z-position -0.136891395124737. ----------
17-03-17 23:15:18.338 -07 000000610 INF: Cycle	73	Tile	11	Exposure Settings		A	470	G	226	T	226	C	470
17-03-17 23:15:18.348 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28431, sync = True, waitForSettling = True)
17-03-17 23:15:18.348 -07 000000610 INF: Z Motor: Moving to -0.130149 mm, started at -0.136891 mm, distance = 6.74 um
17-03-17 23:15:18.348 -07 000000610 INF: FPGA: Xmit ZDACW 28431\n [Z Motor]
17-03-17 23:15:18.348 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 23:15:18.358 -07 000000610 INF: FPGA: 'ZDACW 28431' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:15:18.358 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:15:18.358 -07 000000415 INF: FPGA: Recv ZDACR 28431
17-03-17 23:15:18.368 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:18.368 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:15:18.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:18.518 -07 000000429 INF: FPGA: Recv ZSGSRD 29552
17-03-17 23:15:18.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:18.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:18.528 -07 000000541 INF: FPGA: Recv ZSGSRD 29549
17-03-17 23:15:18.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:18.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:18.538 -07 000000502 INF: FPGA: Recv ZSGSRD 29549
17-03-17 23:15:18.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:18.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:18.548 -07 000000482 INF: FPGA: Recv ZSGSRD 29551
17-03-17 23:15:18.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:18.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:18.558 -07 000000409 INF: FPGA: Recv ZSGSRD 29551
17-03-17 23:15:18.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:18.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:18.568 -07 000000462 INF: FPGA: Recv ZSGSRD 29549
17-03-17 23:15:18.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:18.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:18.578 -07 000000415 INF: FPGA: Recv ZSGSRD 29547
17-03-17 23:15:18.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:18.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:18.588 -07 000000429 INF: FPGA: Recv ZSGSRD 29548
17-03-17 23:15:18.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:18.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:18.598 -07 000000409 INF: FPGA: Recv ZSGSRD 29550
17-03-17 23:15:18.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:18.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:18.608 -07 000000482 INF: FPGA: Recv ZSGSRD 29548
17-03-17 23:15:18.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:18.618 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:15:18.618 -07 000000486 INF: FPGA: Recv ZPIEZORD 25164
17-03-17 23:15:18.628 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:18.628 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.338 V. Piezo Error = -9.6 V.
17-03-17 23:15:18.628 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.1 um, Read 10 ADC samples: Avg = 29549 (-129.4 uncal um), Error = 0.8 uncal um, Median = 29549 (-129.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 29547 (-129.4 uncal um), Max = 29552 (-129.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 23:15:18.628 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29549, posNoise = 3, negNoise = 2
17-03-17 23:15:18.628 -07 000000610 INF: Z Motor: After move to -0.130149, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:15:18.628 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 23:15:18.628 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:15:18.628 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:15:18.628 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:15:18.628 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:15:18.628 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:15:18.628 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:15:18.628 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:15:18.628 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:15:18.628 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:15:18.628 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:15:18.628 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 23:15:18.628 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:15:18.638 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 23:15:18.638 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:15:18.638 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:15:18.638 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:15:18.648 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 23:15:18.648 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 23:15:18.648 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 23:15:18.648 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 23:15:18.648 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 470 470 226 226 28608 150\n [Camera]
17-03-17 23:15:18.848 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:15:19.318 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 662
17-03-17 23:15:19.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 662
17-03-17 23:15:19.318 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:15:19.318 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 662
17-03-17 23:15:19.318 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 662
17-03-17 23:15:19.318 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:15:19.318 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:15:19.318 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 23:15:19.328 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:15:19.328 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 23:15:19.508 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28608 855
17-03-17 23:15:19.658 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1005
17-03-17 23:15:19.698 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 23:15:19.698 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 23:15:19.698 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:15:19.708 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 23:15:19.708 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 23:15:19.708 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:15:19.708 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:15:19.708 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:15:19.708 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 23:15:19.718 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 23:15:19.888 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1231
17-03-17 23:15:19.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1231
17-03-17 23:15:19.888 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:15:19.888 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1231
17-03-17 23:15:19.888 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1231
17-03-17 23:15:19.888 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:15:20.008 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:15:20.008 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-17 23:15:20.008 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:15:20.008 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 23:15:20.078 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP 1423
17-03-17 23:15:20.078 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:15:20.078 -07 000000610 INF: FPGA: 'CAMDBLSNAP 470 470 226 226 28608 150' command took 2 ms to send, 1423 ms to get response, and 1430 ms overall
17-03-17 23:15:20.078 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:15:20.078 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.205078125, Z-Position -0.13015239658803. ------
17-03-17 23:15:20.078 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:15:20.078 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13678 mm
17-03-17 23:15:20.078 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:15:20.088 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:15:20.088 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 23:15:20.088 -07 000000415 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:15:20.088 -07 000000593 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 23:15:20.088 -07 000000593 INF: Y Motor: Moving to 69.0426 mm, started at 68.2051 mm, delta = 0.8375 mm
17-03-17 23:15:20.088 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 29881, sync = True, waitForSettling = False)
17-03-17 23:15:20.088 -07 000000382 INF: Z Motor: Moving to -0.136786 mm, started at -0.130152 mm, distance = -6.63 um
17-03-17 23:15:20.098 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:15:20.098 -07 000000448 INF: FPGA: Recv YRDPOS 139685
17-03-17 23:15:20.108 -07 000000382 INF: FPGA: Xmit ZDACW 29881\n [Z Motor]
17-03-17 23:15:20.108 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 23:15:20.108 -07 000000593 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:15:20.108 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 23:15:20.108 -07 000000593 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:15:20.108 -07 000000593 INF: Y Motor: Moving 1339 steps-15
17-03-17 23:15:20.118 -07 000000382 INF: FPGA: 'ZDACW 29881' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 23:15:20.118 -07 000000593 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:15:20.128 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:15:20.128 -07 000000462 INF: FPGA: Recv ZDACR 29881
17-03-17 23:15:20.138 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:15:20.138 -07 000000382 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-17 23:15:20.288 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:15:20.288 -07 000000415 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 202 ms overall
17-03-17 23:15:20.398 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 23:15:20.398 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 23:15:20.398 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:15:20.398 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 23:15:20.398 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 23:15:20.398 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:15:20.398 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:15:20.398 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:15:20.398 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 514 ms.
17-03-17 23:15:20.408 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 516 ms.
17-03-17 23:15:20.488 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-17 23:15:20.488 -07 000000593 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 382 ms overall
17-03-17 23:15:20.528 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:15:20.538 -07 000000482 INF: FPGA: Recv YRDPOS 141368
17-03-17 23:15:20.538 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 23:15:20.538 -07 000000593 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:15:20.538 -07 000000593 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 23:15:20.538 -07 000000593 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.838 mm, average velocity = 2.181 mm/sec
17-03-17 23:15:20.858 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 73, FrontChillerTemperature: 3.994908,
17-03-17 23:15:21.488 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:15:21.488 -07 000000623 INF: FPGA: Recv YRDPOS 141368
17-03-17 23:15:21.498 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:15:21.498 -07 000000593 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:15:21.518 -07 000000593 INF: Y Motor: After move to 69.042610, error = -0.015266, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:15:21.518 -07 000000593 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:15:21.518 -07 000000593 INF: Y Motor: Moved to 69.0273 after 1430 ms (table move)
17-03-17 23:15:21.518 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136786 mm (DAC = 29881)
17-03-17 23:15:21.518 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:21.528 -07 000000478 INF: FPGA: Recv ZSGSRD 30581
17-03-17 23:15:21.528 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 23:15:21.528 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:21.528 -07 000000475 INF: FPGA: Recv ZSGSRD 30580
17-03-17 23:15:21.538 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:15:21.538 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:21.538 -07 000000382 INF: FPGA: Recv ZSGSRD 30583
17-03-17 23:15:21.548 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:21.548 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:21.548 -07 000000482 INF: FPGA: Recv ZSGSRD 30589
17-03-17 23:15:21.558 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:21.558 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:21.558 -07 000000551 INF: FPGA: Recv ZSGSRD 30584
17-03-17 23:15:21.568 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:21.568 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:21.568 -07 000000415 INF: FPGA: Recv ZSGSRD 30584
17-03-17 23:15:21.578 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:21.578 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:21.578 -07 000000448 INF: FPGA: Recv ZSGSRD 30579
17-03-17 23:15:21.588 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:21.588 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:21.588 -07 000000618 INF: FPGA: Recv ZSGSRD 30585
17-03-17 23:15:21.598 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:21.598 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:21.598 -07 000000501 INF: FPGA: Recv ZSGSRD 30581
17-03-17 23:15:21.608 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:21.608 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:21.608 -07 000000429 INF: FPGA: Recv ZSGSRD 30578
17-03-17 23:15:21.618 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:21.618 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:15:21.618 -07 000000541 INF: FPGA: Recv ZPIEZORD 26498
17-03-17 23:15:21.628 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:21.628 -07 000000502 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.560 V. Piezo Error = -9.0 V.
17-03-17 23:15:21.628 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.8 um, Read 10 ADC samples: Avg = 30582 (-136.0 uncal um), Error = 0.8 uncal um, Median = 30582 (-136.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30578 (-136.0 uncal um), Max = 30589 (-136.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:15:21.628 -07 000000502 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30582, posNoise = 7, negNoise = 4
17-03-17 23:15:21.628 -07 000000502 INF: Z Motor: After move to -0.136786, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:15:21.628 -07 000000502 INF: Z Motor: Settle wait time = 1435 ms, measure time = 101 ms (allowed 150 ms), total time = 1536 ms
17-03-17 23:15:21.628 -07 000000502 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 23:15:21.678 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1590 ms
17-03-17 23:15:21.678 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:15:21.678 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:15:21.678 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:15:21.678 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:15:21.678 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:15:21.678 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:15:21.678 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:15:21.678 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:15:21.678 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:15:21.688 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:15:21.688 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:15:21.698 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 23:15:21.698 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 23:15:21.698 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:15:21.748 -07 000000482 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:15:21.948 -07 000000623 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:15:21.948 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:15:21.948 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:15:21.948 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) start.
17-03-17 23:15:21.978 -07 000000576 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:15:21.988 -07 000000482 INF: FPGA: Recv CAMSNAP
17-03-17 23:15:21.988 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 23:15:22.048 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:15:22.068 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 23:15:22.078 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:15:22.078 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:15:22.078 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 23:15:22.078 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 72. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1154, R2=1202, Total=2356. Warn if over 250 bubbles per interval.
17-03-17 23:15:22.088 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:15:22.088 -07 000000501 INF: Autofocus start
17-03-17 23:15:22.088 -07 000000501 INF: MeasureProfile start
17-03-17 23:15:22.088 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:15:22.098 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:15:22.098 -07 000000478 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:15:22.098 -07 000000501 INF: MeasureProfile done
17-03-17 23:15:22.098 -07 000000501 INF: X=9  Z correction [um]=0.01934518
17-03-17 23:15:22.098 -07 000000501 INF: Autofocus finished
17-03-17 23:15:22.298 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:15:22.298 -07 000000478 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 205 ms overall
17-03-17 23:15:22.308 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02734375, Z-position -0.136788607730469. ----------
17-03-17 23:15:22.308 -07 000000610 INF: Cycle	73	Tile	12	Exposure Settings		A	470	G	226	T	226	C	470
17-03-17 23:15:22.308 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28397, sync = True, waitForSettling = True)
17-03-17 23:15:22.308 -07 000000610 INF: Z Motor: Moving to -0.129993 mm, started at -0.136789 mm, distance = 6.80 um
17-03-17 23:15:22.308 -07 000000610 INF: FPGA: Xmit ZDACW 28397\n [Z Motor]
17-03-17 23:15:22.308 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 23:15:22.318 -07 000000610 INF: FPGA: 'ZDACW 28397' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:15:22.318 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:15:22.318 -07 000000627 INF: FPGA: Recv ZDACR 28397
17-03-17 23:15:22.328 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:22.328 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:15:22.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:22.478 -07 000000462 INF: FPGA: Recv ZSGSRD 29522
17-03-17 23:15:22.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:22.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:22.488 -07 000000486 INF: FPGA: Recv ZSGSRD 29524
17-03-17 23:15:22.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:22.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:22.498 -07 000000478 INF: FPGA: Recv ZSGSRD 29525
17-03-17 23:15:22.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:22.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:22.508 -07 000000501 INF: FPGA: Recv ZSGSRD 29527
17-03-17 23:15:22.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:22.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:22.518 -07 000000502 INF: FPGA: Recv ZSGSRD 29528
17-03-17 23:15:22.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:22.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:22.528 -07 000000462 INF: FPGA: Recv ZSGSRD 29522
17-03-17 23:15:22.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:22.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:22.538 -07 000000429 INF: FPGA: Recv ZSGSRD 29525
17-03-17 23:15:22.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:22.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:22.548 -07 000000478 INF: FPGA: Recv ZSGSRD 29521
17-03-17 23:15:22.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:22.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:22.558 -07 000000486 INF: FPGA: Recv ZSGSRD 29526
17-03-17 23:15:22.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:22.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:22.568 -07 000000576 INF: FPGA: Recv ZSGSRD 29522
17-03-17 23:15:22.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:22.578 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:15:22.578 -07 000000382 INF: FPGA: Recv ZPIEZORD 25121
17-03-17 23:15:22.588 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:22.588 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.333 V. Piezo Error = -9.7 V.
17-03-17 23:15:22.588 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.0 um, Read 10 ADC samples: Avg = 29524 (-129.2 uncal um), Error = 0.8 uncal um, Median = 29524 (-129.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29521 (-129.2 uncal um), Max = 29528 (-129.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 23:15:22.588 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29524, posNoise = 4, negNoise = 3
17-03-17 23:15:22.588 -07 000000610 INF: Z Motor: After move to -0.129993, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:15:22.588 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 23:15:22.588 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:15:22.588 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:15:22.588 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:15:22.588 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:15:22.588 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:15:22.588 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:15:22.588 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:15:22.588 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:15:22.588 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 23:15:22.588 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:15:22.588 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:15:22.588 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:15:22.598 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 23:15:22.598 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:15:22.598 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:15:22.598 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:15:22.608 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 23:15:22.608 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 23:15:22.608 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 23:15:22.608 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:15:22.608 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 470 470 226 226 28574 150\n [Camera]
17-03-17 23:15:22.808 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:15:23.278 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 662
17-03-17 23:15:23.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 662
17-03-17 23:15:23.278 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:15:23.288 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:15:23.288 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 23:15:23.288 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 662
17-03-17 23:15:23.288 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 662
17-03-17 23:15:23.288 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:15:23.288 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:15:23.288 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 23:15:23.468 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28574 855
17-03-17 23:15:23.618 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1005
17-03-17 23:15:23.668 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 23:15:23.668 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 23:15:23.668 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:15:23.668 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:15:23.668 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 23:15:23.668 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 23:15:23.668 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 23:15:23.668 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:15:23.678 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:15:23.678 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 23:15:23.848 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1231
17-03-17 23:15:23.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1231
17-03-17 23:15:23.848 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:15:23.848 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1231
17-03-17 23:15:23.848 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1231
17-03-17 23:15:23.848 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:15:23.858 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:15:23.858 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 23:15:23.858 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:15:23.858 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2602438304, 0x0, 418435064) start.
17-03-17 23:15:24.038 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1424
17-03-17 23:15:24.038 -07 000000593 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:15:24.038 -07 000000610 INF: FPGA: 'CAMDBLSNAP 470 470 226 226 28574 150' command took 2 ms to send, 1424 ms to get response, and 1431 ms overall
17-03-17 23:15:24.038 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:15:24.038 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02734375, Z-Position -0.129991791284486. ------
17-03-17 23:15:24.038 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:15:24.038 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13635 mm
17-03-17 23:15:24.048 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:15:24.048 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:15:24.048 -07 000000547 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 23:15:24.048 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 29786, sync = True, waitForSettling = False)
17-03-17 23:15:24.048 -07 000000486 INF: Z Motor: Moving to -0.136352 mm, started at -0.129992 mm, distance = -6.36 um
17-03-17 23:15:24.048 -07 000000547 INF: Y Motor: Moving to 69.8726 mm, started at 69.0273 mm, delta = 0.8453 mm
17-03-17 23:15:24.058 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:15:24.058 -07 000000486 INF: FPGA: Xmit ZDACW 29786\n [Z Motor]
17-03-17 23:15:24.058 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 23:15:24.068 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:15:24.068 -07 000000486 INF: FPGA: 'ZDACW 29786' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 23:15:24.068 -07 000000561 INF: FPGA: Recv YRDPOS 141368
17-03-17 23:15:24.078 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:15:24.078 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 23:15:24.078 -07 000000547 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:15:24.078 -07 000000547 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:15:24.078 -07 000000547 INF: Y Motor: Moving 1352 steps-31
17-03-17 23:15:24.088 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:15:24.088 -07 000000561 INF: FPGA: Recv ZDACR 29786
17-03-17 23:15:24.098 -07 000000547 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:15:24.098 -07 000000486 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:15:24.098 -07 000000486 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-17 23:15:24.238 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2602438304, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 23:15:24.238 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 23:15:24.238 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:15:24.238 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 23:15:24.238 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 23:15:24.238 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:15:24.248 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:15:24.248 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:15:24.248 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 23:15:24.258 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 23:15:24.278 -07 000000541 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:15:24.278 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 23:15:24.478 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-17 23:15:24.478 -07 000000547 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 400 ms overall
17-03-17 23:15:24.518 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:15:24.518 -07 000000382 INF: FPGA: Recv YRDPOS 143080
17-03-17 23:15:24.528 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:15:24.528 -07 000000547 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:15:24.528 -07 000000547 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 23:15:24.528 -07 000000547 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.845 mm, average velocity = 2.113 mm/sec
17-03-17 23:15:25.478 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:15:25.478 -07 000000478 INF: FPGA: Recv YRDPOS 143080
17-03-17 23:15:25.488 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:25.488 -07 000000547 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:15:25.508 -07 000000547 INF: Y Motor: After move to 69.872612, error = -0.009331, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:15:25.508 -07 000000547 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:15:25.508 -07 000000547 INF: Y Motor: Moved to 69.8633 after 1461 ms (table move)
17-03-17 23:15:25.518 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136352 mm (DAC = 29786)
17-03-17 23:15:25.518 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:25.518 -07 000000486 INF: FPGA: Recv ZSGSRD 30511
17-03-17 23:15:25.528 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:25.528 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:25.528 -07 000000561 INF: FPGA: Recv ZSGSRD 30510
17-03-17 23:15:25.538 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:25.538 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:25.538 -07 000000482 INF: FPGA: Recv ZSGSRD 30513
17-03-17 23:15:25.548 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:25.548 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:25.548 -07 000000547 INF: FPGA: Recv ZSGSRD 30518
17-03-17 23:15:25.558 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:25.558 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:25.558 -07 000000486 INF: FPGA: Recv ZSGSRD 30517
17-03-17 23:15:25.568 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:25.568 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:25.568 -07 000000478 INF: FPGA: Recv ZSGSRD 30516
17-03-17 23:15:25.578 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:25.578 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:25.578 -07 000000551 INF: FPGA: Recv ZSGSRD 30517
17-03-17 23:15:25.588 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:25.588 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:25.588 -07 000000593 INF: FPGA: Recv ZSGSRD 30511
17-03-17 23:15:25.598 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:25.598 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:25.598 -07 000000618 INF: FPGA: Recv ZSGSRD 30507
17-03-17 23:15:25.608 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:25.608 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:25.608 -07 000000478 INF: FPGA: Recv ZSGSRD 30506
17-03-17 23:15:25.618 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:25.618 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:15:25.618 -07 000000561 INF: FPGA: Recv ZPIEZORD 26434
17-03-17 23:15:25.628 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:25.628 -07 000000502 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.545 V. Piezo Error = -9.0 V.
17-03-17 23:15:25.628 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.4 um, Read 10 ADC samples: Avg = 30513 (-135.6 uncal um), Error = 0.8 uncal um, Median = 30512 (-135.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30506 (-135.5 uncal um), Max = 30518 (-135.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 23:15:25.628 -07 000000502 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30513, posNoise = 5, negNoise = 7
17-03-17 23:15:25.628 -07 000000502 INF: Z Motor: After move to -0.136352, error = 0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:15:25.628 -07 000000502 INF: Z Motor: Settle wait time = 1464 ms, measure time = 110 ms (allowed 150 ms), total time = 1574 ms
17-03-17 23:15:25.628 -07 000000502 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 23:15:25.668 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1620 ms
17-03-17 23:15:25.668 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:15:25.668 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:15:25.668 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:15:25.668 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:15:25.668 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:15:25.668 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:15:25.668 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:15:25.668 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:15:25.668 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:15:25.678 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:15:25.678 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:15:25.678 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 23:15:25.678 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 23:15:25.688 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:15:25.728 -07 000000623 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:15:25.928 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:15:25.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:15:25.928 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:15:26.038 -07 000000475 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:15:26.038 -07 000000475 INF: FPGA: Recv CAMSNAP
17-03-17 23:15:26.038 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 674752456, 0x0, 559484976) start.
17-03-17 23:15:26.038 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 344 ms to get response, and 352 ms overall
17-03-17 23:15:26.158 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 674752456, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 23:15:26.158 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:15:26.158 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:15:26.158 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 225 ms.
17-03-17 23:15:26.228 -07 000000409 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 73, FrontChillerTemperature: 4.009895,
17-03-17 23:15:26.238 -07 000000478 INF: Autofocus start
17-03-17 23:15:26.238 -07 000000478 INF: MeasureProfile start
17-03-17 23:15:26.248 -07 000000478 INF: MeasureProfile done
17-03-17 23:15:26.248 -07 000000478 INF: X=16  Z correction [um]=0.0530179
17-03-17 23:15:26.248 -07 000000478 INF: Autofocus finished
17-03-17 23:15:26.258 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:15:26.258 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:15:26.268 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 23:15:26.288 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:15:26.488 -07 000000486 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:15:26.488 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 23:15:26.488 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86328125, Z-position -0.136345337092687. ----------
17-03-17 23:15:26.488 -07 000000610 INF: Cycle	73	Tile	13	Exposure Settings		A	470	G	226	T	226	C	470
17-03-17 23:15:26.498 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28310, sync = True, waitForSettling = True)
17-03-17 23:15:26.498 -07 000000610 INF: Z Motor: Moving to -0.129595 mm, started at -0.136345 mm, distance = 6.75 um
17-03-17 23:15:26.498 -07 000000610 INF: FPGA: Xmit ZDACW 28310\n [Z Motor]
17-03-17 23:15:26.498 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 23:15:26.508 -07 000000610 INF: FPGA: 'ZDACW 28310' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:26.508 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:15:26.508 -07 000000618 INF: FPGA: Recv ZDACR 28310
17-03-17 23:15:26.518 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:26.518 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:15:26.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:26.668 -07 000000593 INF: FPGA: Recv ZSGSRD 29465
17-03-17 23:15:26.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:26.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:26.678 -07 000000576 INF: FPGA: Recv ZSGSRD 29465
17-03-17 23:15:26.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:26.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:26.688 -07 000000478 INF: FPGA: Recv ZSGSRD 29468
17-03-17 23:15:26.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:15:26.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:26.698 -07 000000623 INF: FPGA: Recv ZSGSRD 29462
17-03-17 23:15:26.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:26.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:26.708 -07 000000501 INF: FPGA: Recv ZSGSRD 29463
17-03-17 23:15:26.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:26.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:26.718 -07 000000627 INF: FPGA: Recv ZSGSRD 29467
17-03-17 23:15:26.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:26.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:26.728 -07 000000551 INF: FPGA: Recv ZSGSRD 29463
17-03-17 23:15:26.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:26.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:26.738 -07 000000429 INF: FPGA: Recv ZSGSRD 29460
17-03-17 23:15:26.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:26.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:26.748 -07 000000623 INF: FPGA: Recv ZSGSRD 29463
17-03-17 23:15:26.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:26.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:26.758 -07 000000478 INF: FPGA: Recv ZSGSRD 29466
17-03-17 23:15:26.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:26.768 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:15:26.768 -07 000000409 INF: FPGA: Recv ZPIEZORD 25053
17-03-17 23:15:26.778 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:26.778 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.320 V. Piezo Error = -9.7 V.
17-03-17 23:15:26.778 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.6 um, Read 10 ADC samples: Avg = 29464 (-128.8 uncal um), Error = 0.8 uncal um, Median = 29464 (-128.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29460 (-128.8 uncal um), Max = 29468 (-128.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:15:26.778 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29464, posNoise = 4, negNoise = 4
17-03-17 23:15:26.778 -07 000000610 INF: Z Motor: After move to -0.129595, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:15:26.778 -07 000000610 INF: Z Motor: MoveAbsStepped took 285 ms)
17-03-17 23:15:26.778 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:15:26.778 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:15:26.788 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:15:26.788 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:15:26.788 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:15:26.788 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:15:26.788 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:15:26.788 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:15:26.788 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:15:26.788 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:15:26.788 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:15:26.788 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:15:26.798 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 23:15:26.798 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:15:26.798 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 23:15:26.798 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:15:26.808 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 23:15:26.808 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 23:15:26.808 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-17 23:15:26.808 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 23:15:26.808 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 470 470 226 226 28487 150\n [Camera]
17-03-17 23:15:27.008 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:15:27.048 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:15:27.048 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 72. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1154, R2=1202, Total=2356. Warn if over 250 bubbles per interval.
17-03-17 23:15:27.478 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 662
17-03-17 23:15:27.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 662
17-03-17 23:15:27.478 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:15:27.488 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 662
17-03-17 23:15:27.488 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 662
17-03-17 23:15:27.488 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:15:27.488 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:15:27.488 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 583729424, 0x0, 391868352) start.
17-03-17 23:15:27.488 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:15:27.488 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 23:15:27.678 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28487 855
17-03-17 23:15:27.828 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1005
17-03-17 23:15:27.878 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 583729424, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 23:15:27.878 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 23:15:27.878 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:15:27.888 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 23:15:27.888 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 23:15:27.888 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:15:27.888 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:15:27.888 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 23:15:27.888 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:15:27.898 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 23:15:28.048 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1231
17-03-17 23:15:28.048 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1231
17-03-17 23:15:28.048 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:15:28.058 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1231
17-03-17 23:15:28.058 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1231
17-03-17 23:15:28.058 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:15:28.168 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:15:28.168 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-17 23:15:28.168 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:15:28.168 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-17 23:15:28.238 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1424
17-03-17 23:15:28.238 -07 000000409 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:15:28.238 -07 000000610 INF: FPGA: 'CAMDBLSNAP 470 470 226 226 28487 150' command took 2 ms to send, 1419 ms to get response, and 1431 ms overall
17-03-17 23:15:28.248 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:15:28.248 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86328125, Z-Position -0.12960633855598. ------
17-03-17 23:15:28.248 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:15:28.248 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13602 mm
17-03-17 23:15:28.248 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:15:28.248 -07 000000478 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 23:15:28.248 -07 000000478 INF: Y Motor: Moving to 70.7026 mm, started at 69.8633 mm, delta = 0.8393 mm
17-03-17 23:15:28.248 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:15:28.258 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 29713, sync = True, waitForSettling = False)
17-03-17 23:15:28.258 -07 000000627 INF: Z Motor: Moving to -0.136017 mm, started at -0.129606 mm, distance = -6.41 um
17-03-17 23:15:28.258 -07 000000627 INF: FPGA: Xmit ZDACW 29713\n [Z Motor]
17-03-17 23:15:28.258 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:15:28.258 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 23:15:28.268 -07 000000627 INF: FPGA: 'ZDACW 29713' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:28.268 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:15:28.268 -07 000000501 INF: FPGA: Recv ZDACR 29713
17-03-17 23:15:28.278 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:15:28.278 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:28.278 -07 000000627 INF: Z Motor: MoveAbsStepped took 20 ms (did NOT wait for settling yet))
17-03-17 23:15:28.278 -07 000000462 INF: FPGA: Recv YRDPOS 143081
17-03-17 23:15:28.288 -07 000000448 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:15:28.288 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 23:15:28.288 -07 000000478 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:15:28.288 -07 000000478 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:15:28.288 -07 000000478 INF: Y Motor: Moving 1342 steps-19
17-03-17 23:15:28.298 -07 000000478 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:15:28.488 -07 000000482 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:15:28.488 -07 000000448 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 232 ms overall
17-03-17 23:15:28.558 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 23:15:28.558 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 23:15:28.558 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:15:28.558 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:15:28.558 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 23:15:28.558 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 23:15:28.558 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:15:28.568 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:15:28.568 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 512 ms.
17-03-17 23:15:28.568 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 511 ms.
17-03-17 23:15:28.668 -07 000000409 INF: FPGA: Recv YMVTILE
17-03-17 23:15:28.668 -07 000000478 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-17 23:15:28.708 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:15:28.718 -07 000000448 INF: FPGA: Recv YRDPOS 144770
17-03-17 23:15:28.718 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 23:15:28.718 -07 000000478 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:15:28.718 -07 000000478 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 23:15:28.718 -07 000000478 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.839 mm, average velocity = 2.186 mm/sec
17-03-17 23:15:29.668 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:15:29.668 -07 000000541 INF: FPGA: Recv YRDPOS 144770
17-03-17 23:15:29.678 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:29.678 -07 000000478 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:15:29.698 -07 000000478 INF: Y Motor: After move to 70.702606, error = -0.014130, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:15:29.698 -07 000000478 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:15:29.698 -07 000000478 INF: Y Motor: Moved to 70.6885 after 1447 ms (table move)
17-03-17 23:15:29.708 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136017 mm (DAC = 29713)
17-03-17 23:15:29.708 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:29.708 -07 000000576 INF: FPGA: Recv ZSGSRD 30459
17-03-17 23:15:29.718 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:15:29.718 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:29.718 -07 000000618 INF: FPGA: Recv ZSGSRD 30458
17-03-17 23:15:29.728 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:29.728 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:29.728 -07 000000623 INF: FPGA: Recv ZSGSRD 30464
17-03-17 23:15:29.738 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:29.738 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:29.738 -07 000000448 INF: FPGA: Recv ZSGSRD 30470
17-03-17 23:15:29.748 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:29.748 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:29.748 -07 000000541 INF: FPGA: Recv ZSGSRD 30460
17-03-17 23:15:29.758 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:29.758 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:29.758 -07 000000627 INF: FPGA: Recv ZSGSRD 30470
17-03-17 23:15:29.768 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:29.768 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:29.768 -07 000000429 INF: FPGA: Recv ZSGSRD 30460
17-03-17 23:15:29.778 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:29.778 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:29.778 -07 000000478 INF: FPGA: Recv ZSGSRD 30459
17-03-17 23:15:29.788 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:29.788 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:29.788 -07 000000475 INF: FPGA: Recv ZSGSRD 30464
17-03-17 23:15:29.798 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:29.798 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:29.798 -07 000000486 INF: FPGA: Recv ZSGSRD 30461
17-03-17 23:15:29.808 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:29.808 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:15:29.808 -07 000000593 INF: FPGA: Recv ZPIEZORD 26372
17-03-17 23:15:29.818 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:29.818 -07 000000561 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.3 V, since DAC is at 4.534 V. Piezo Error = -9.0 V.
17-03-17 23:15:29.818 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.0 um, Read 10 ADC samples: Avg = 30462 (-135.2 uncal um), Error = 0.8 uncal um, Median = 30460 (-135.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30458 (-135.2 uncal um), Max = 30470 (-135.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:15:29.818 -07 000000561 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30462, posNoise = 8, negNoise = 4
17-03-17 23:15:29.818 -07 000000561 INF: Z Motor: After move to -0.136017, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:15:29.818 -07 000000561 INF: Z Motor: Settle wait time = 1451 ms, measure time = 109 ms (allowed 150 ms), total time = 1560 ms
17-03-17 23:15:29.818 -07 000000561 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 23:15:29.868 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1613 ms
17-03-17 23:15:29.868 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:15:29.868 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:15:29.868 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:15:29.868 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:15:29.868 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:15:29.868 -07 000000409 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:15:29.868 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:15:29.868 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:15:29.868 -07 000000409 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:15:29.878 -07 000000409 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:15:29.878 -07 000000409 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:15:29.878 -07 000000409 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 23:15:29.878 -07 000000409 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 23:15:29.888 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:15:29.928 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:15:30.128 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:15:30.128 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:15:30.128 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:15:30.128 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 596199184, 0x0, 559484976) start.
17-03-17 23:15:30.168 -07 000000501 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:15:30.168 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-17 23:15:30.168 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 23:15:30.248 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 596199184, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 23:15:30.248 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:15:30.248 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:15:30.248 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 23:15:30.268 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:15:30.268 -07 000000593 INF: Autofocus start
17-03-17 23:15:30.268 -07 000000593 INF: MeasureProfile start
17-03-17 23:15:30.268 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:15:30.278 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:15:30.278 -07 000000486 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:15:30.278 -07 000000593 INF: MeasureProfile done
17-03-17 23:15:30.278 -07 000000593 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 23:15:30.278 -07 000000593 INF: Autofocus finished
17-03-17 23:15:30.478 -07 000000541 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:15:30.478 -07 000000486 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:15:30.478 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6884765625, Z-position -0.136017702273457. ----------
17-03-17 23:15:30.488 -07 000000610 INF: Cycle	73	Tile	14	Exposure Settings		A	470	G	226	T	226	C	470
17-03-17 23:15:30.488 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28208, sync = True, waitForSettling = True)
17-03-17 23:15:30.488 -07 000000610 INF: Z Motor: Moving to -0.129128 mm, started at -0.136018 mm, distance = 6.89 um
17-03-17 23:15:30.488 -07 000000610 INF: FPGA: Xmit ZDACW 28208\n [Z Motor]
17-03-17 23:15:30.488 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 23:15:30.498 -07 000000610 INF: FPGA: 'ZDACW 28208' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:15:30.498 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:15:30.498 -07 000000475 INF: FPGA: Recv ZDACR 28208
17-03-17 23:15:30.508 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:30.508 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:15:30.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:30.658 -07 000000429 INF: FPGA: Recv ZSGSRD 29388
17-03-17 23:15:30.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:15:30.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:30.668 -07 000000409 INF: FPGA: Recv ZSGSRD 29386
17-03-17 23:15:30.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:30.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:30.678 -07 000000382 INF: FPGA: Recv ZSGSRD 29392
17-03-17 23:15:30.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:30.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:30.688 -07 000000429 INF: FPGA: Recv ZSGSRD 29387
17-03-17 23:15:30.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:30.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:30.698 -07 000000409 INF: FPGA: Recv ZSGSRD 29388
17-03-17 23:15:30.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:30.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:30.708 -07 000000547 INF: FPGA: Recv ZSGSRD 29390
17-03-17 23:15:30.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:30.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:30.718 -07 000000627 INF: FPGA: Recv ZSGSRD 29391
17-03-17 23:15:30.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:30.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:30.728 -07 000000541 INF: FPGA: Recv ZSGSRD 29392
17-03-17 23:15:30.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:30.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:30.738 -07 000000429 INF: FPGA: Recv ZSGSRD 29382
17-03-17 23:15:30.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:30.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:30.748 -07 000000409 INF: FPGA: Recv ZSGSRD 29389
17-03-17 23:15:30.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:30.758 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:15:30.758 -07 000000382 INF: FPGA: Recv ZPIEZORD 24964
17-03-17 23:15:30.768 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:30.768 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.304 V. Piezo Error = -9.7 V.
17-03-17 23:15:30.768 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.1 um, Read 10 ADC samples: Avg = 29388 (-128.3 uncal um), Error = 0.8 uncal um, Median = 29388 (-128.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29382 (-128.3 uncal um), Max = 29392 (-128.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:15:30.768 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29388, posNoise = 4, negNoise = 6
17-03-17 23:15:30.768 -07 000000610 INF: Z Motor: After move to -0.129128, error = 0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:15:30.768 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 23:15:30.768 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:15:30.768 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:15:30.768 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:15:30.768 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:15:30.768 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:15:30.768 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:15:30.768 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:15:30.768 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:15:30.768 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:15:30.768 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:15:30.768 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 23:15:30.768 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:15:30.778 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 23:15:30.778 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:15:30.778 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 23:15:30.778 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:15:30.788 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 23:15:30.788 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 23:15:30.788 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 23:15:30.788 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 23:15:30.788 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 470 470 226 226 28385 150\n [Camera]
17-03-17 23:15:30.988 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:15:31.458 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 662
17-03-17 23:15:31.458 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 662
17-03-17 23:15:31.458 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 662
17-03-17 23:15:31.458 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 662
17-03-17 23:15:31.458 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:15:31.458 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:15:31.468 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:15:31.468 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 23:15:31.468 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:15:31.468 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 23:15:31.608 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 73, FrontChillerTemperature: 4.018051,
17-03-17 23:15:31.648 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28385 855
17-03-17 23:15:31.798 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1005
17-03-17 23:15:31.848 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 23:15:31.848 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 23:15:31.848 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:15:31.858 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:15:31.858 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 23:15:31.858 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 23:15:31.858 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:15:31.858 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:15:31.858 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 23:15:31.858 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 23:15:32.028 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1231
17-03-17 23:15:32.028 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1231
17-03-17 23:15:32.028 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:15:32.028 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1231
17-03-17 23:15:32.028 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1231
17-03-17 23:15:32.028 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:15:32.028 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:15:32.028 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 23:15:32.028 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:15:32.028 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2602438304, 0x0, 391868352) start.
17-03-17 23:15:32.048 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:15:32.048 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 72. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1154, R2=1202, Total=2356. Warn if over 250 bubbles per interval.
17-03-17 23:15:32.218 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1424
17-03-17 23:15:32.218 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:15:32.218 -07 000000610 INF: FPGA: 'CAMDBLSNAP 470 470 226 226 28385 150' command took 2 ms to send, 1424 ms to get response, and 1431 ms overall
17-03-17 23:15:32.218 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:15:32.218 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6884765625, Z-Position -0.129118098433206. ------
17-03-17 23:15:32.228 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:15:32.228 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13586 mm
17-03-17 23:15:32.228 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:15:32.228 -07 000000475 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 23:15:32.228 -07 000000475 INF: Y Motor: Moving to 71.5326 mm, started at 70.6885 mm, delta = 0.8441 mm
17-03-17 23:15:32.228 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 29679, sync = True, waitForSettling = False)
17-03-17 23:15:32.228 -07 000000551 INF: Z Motor: Moving to -0.135862 mm, started at -0.129118 mm, distance = -6.74 um
17-03-17 23:15:32.228 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:15:32.238 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:15:32.238 -07 000000551 INF: FPGA: Xmit ZDACW 29679\n [Z Motor]
17-03-17 23:15:32.238 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 23:15:32.248 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:15:32.248 -07 000000551 INF: FPGA: 'ZDACW 29679' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 23:15:32.248 -07 000000448 INF: FPGA: Recv YRDPOS 144770
17-03-17 23:15:32.258 -07 000000478 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:15:32.258 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 23:15:32.258 -07 000000475 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:15:32.258 -07 000000475 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:15:32.258 -07 000000475 INF: Y Motor: Moving 1351 steps-29
17-03-17 23:15:32.268 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:15:32.268 -07 000000448 INF: FPGA: Recv ZDACR 29679
17-03-17 23:15:32.278 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:15:32.278 -07 000000551 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-17 23:15:32.278 -07 000000475 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:15:32.428 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 23:15:32.428 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 23:15:32.428 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:15:32.428 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2602438304, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 23:15:32.428 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 23:15:32.428 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:15:32.438 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 23:15:32.438 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:15:32.438 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 23:15:32.438 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 23:15:32.458 -07 000000482 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:15:32.458 -07 000000478 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 23:15:32.648 -07 000000409 INF: FPGA: Recv YMVTILE
17-03-17 23:15:32.648 -07 000000475 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 23:15:32.688 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:15:32.698 -07 000000501 INF: FPGA: Recv YRDPOS 146471
17-03-17 23:15:32.698 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 23:15:32.698 -07 000000475 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:15:32.698 -07 000000475 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 23:15:32.698 -07 000000475 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.844 mm, average velocity = 2.121 mm/sec
17-03-17 23:15:33.648 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:15:33.648 -07 000000502 INF: FPGA: Recv YRDPOS 146472
17-03-17 23:15:33.658 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:15:33.658 -07 000000475 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:15:33.678 -07 000000475 INF: Y Motor: After move to 71.532608, error = -0.013077, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:15:33.678 -07 000000475 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 23:15:33.678 -07 000000475 INF: Y Motor: Moved to 71.5195 after 1451 ms (table move)
17-03-17 23:15:33.678 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135862 mm (DAC = 29679)
17-03-17 23:15:33.678 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:33.688 -07 000000551 INF: FPGA: Recv ZSGSRD 30432
17-03-17 23:15:33.688 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 23:15:33.688 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:33.688 -07 000000462 INF: FPGA: Recv ZSGSRD 30440
17-03-17 23:15:33.698 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:15:33.698 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:33.698 -07 000000475 INF: FPGA: Recv ZSGSRD 30433
17-03-17 23:15:33.708 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:33.708 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:33.708 -07 000000623 INF: FPGA: Recv ZSGSRD 30440
17-03-17 23:15:33.718 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:33.718 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:33.718 -07 000000462 INF: FPGA: Recv ZSGSRD 30445
17-03-17 23:15:33.728 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:33.728 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:33.728 -07 000000561 INF: FPGA: Recv ZSGSRD 30440
17-03-17 23:15:33.738 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:33.738 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:33.738 -07 000000593 INF: FPGA: Recv ZSGSRD 30445
17-03-17 23:15:33.748 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:33.748 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:33.748 -07 000000547 INF: FPGA: Recv ZSGSRD 30440
17-03-17 23:15:33.758 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:33.758 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:33.758 -07 000000623 INF: FPGA: Recv ZSGSRD 30436
17-03-17 23:15:33.768 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:33.768 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:33.768 -07 000000478 INF: FPGA: Recv ZSGSRD 30441
17-03-17 23:15:33.778 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:33.778 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:15:33.778 -07 000000409 INF: FPGA: Recv ZPIEZORD 26331
17-03-17 23:15:33.788 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:33.788 -07 000000382 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.3 V, since DAC is at 4.529 V. Piezo Error = -9.0 V.
17-03-17 23:15:33.788 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.9 um, Read 10 ADC samples: Avg = 30439 (-135.1 uncal um), Error = 0.8 uncal um, Median = 30440 (-135.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30432 (-135.0 uncal um), Max = 30445 (-135.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 23:15:33.788 -07 000000382 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30439, posNoise = 6, negNoise = 7
17-03-17 23:15:33.788 -07 000000382 INF: Z Motor: After move to -0.135862, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:15:33.788 -07 000000382 INF: Z Motor: Settle wait time = 1454 ms, measure time = 103 ms (allowed 150 ms), total time = 1557 ms
17-03-17 23:15:33.788 -07 000000382 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 23:15:33.838 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-17 23:15:33.838 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:15:33.838 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:15:33.838 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:15:33.838 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:15:33.838 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:15:33.838 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:15:33.838 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:15:33.838 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:15:33.838 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:15:33.838 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:15:33.838 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:15:33.858 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 23:15:33.858 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 23:15:33.858 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:15:33.908 -07 000000415 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:15:34.108 -07 000000547 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:15:34.108 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:15:34.108 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:15:34.108 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 615280568, 0x0, 559484976) start.
17-03-17 23:15:34.148 -07 000000593 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:15:34.148 -07 000000623 INF: FPGA: Recv CAMSNAP
17-03-17 23:15:34.148 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 23:15:34.238 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 615280568, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 23:15:34.238 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:15:34.238 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:15:34.238 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 23:15:34.248 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:15:34.248 -07 000000448 INF: Autofocus start
17-03-17 23:15:34.248 -07 000000448 INF: MeasureProfile start
17-03-17 23:15:34.248 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:15:34.258 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:15:34.258 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:15:34.258 -07 000000448 INF: MeasureProfile done
17-03-17 23:15:34.258 -07 000000448 INF: X=0  Z correction [um]=-0.02394831
17-03-17 23:15:34.258 -07 000000448 INF: Autofocus finished
17-03-17 23:15:34.458 -07 000000627 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:15:34.458 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:15:34.458 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51953125, Z-position -0.135869945394197. ----------
17-03-17 23:15:34.458 -07 000000610 INF: Cycle	73	Tile	15	Exposure Settings		A	470	G	226	T	226	C	470
17-03-17 23:15:34.468 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28186, sync = True, waitForSettling = True)
17-03-17 23:15:34.468 -07 000000610 INF: Z Motor: Moving to -0.129027 mm, started at -0.135870 mm, distance = 6.84 um
17-03-17 23:15:34.468 -07 000000610 INF: FPGA: Xmit ZDACW 28186\n [Z Motor]
17-03-17 23:15:34.468 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 23:15:34.478 -07 000000610 INF: FPGA: 'ZDACW 28186' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:34.478 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:15:34.478 -07 000000627 INF: FPGA: Recv ZDACR 28186
17-03-17 23:15:34.488 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:34.488 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:15:34.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:34.638 -07 000000501 INF: FPGA: Recv ZSGSRD 29379
17-03-17 23:15:34.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:34.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:34.648 -07 000000478 INF: FPGA: Recv ZSGSRD 29378
17-03-17 23:15:34.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:15:34.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:34.658 -07 000000623 INF: FPGA: Recv ZSGSRD 29372
17-03-17 23:15:34.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:34.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:34.668 -07 000000618 INF: FPGA: Recv ZSGSRD 29372
17-03-17 23:15:34.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:34.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:34.678 -07 000000462 INF: FPGA: Recv ZSGSRD 29374
17-03-17 23:15:34.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:34.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:34.688 -07 000000448 INF: FPGA: Recv ZSGSRD 29382
17-03-17 23:15:34.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:34.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:34.698 -07 000000478 INF: FPGA: Recv ZSGSRD 29371
17-03-17 23:15:34.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:34.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:34.708 -07 000000502 INF: FPGA: Recv ZSGSRD 29374
17-03-17 23:15:34.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:34.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:34.718 -07 000000501 INF: FPGA: Recv ZSGSRD 29376
17-03-17 23:15:34.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:34.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:34.728 -07 000000462 INF: FPGA: Recv ZSGSRD 29378
17-03-17 23:15:34.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:34.738 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:15:34.738 -07 000000561 INF: FPGA: Recv ZPIEZORD 24947
17-03-17 23:15:34.748 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:34.748 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.301 V. Piezo Error = -9.7 V.
17-03-17 23:15:34.748 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.0 um, Read 10 ADC samples: Avg = 29376 (-128.3 uncal um), Error = 0.8 uncal um, Median = 29375 (-128.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29371 (-128.2 uncal um), Max = 29382 (-128.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:15:34.748 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29376, posNoise = 6, negNoise = 5
17-03-17 23:15:34.748 -07 000000610 INF: Z Motor: After move to -0.129027, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:15:34.748 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 23:15:34.748 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:15:34.748 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:15:34.748 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:15:34.748 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:15:34.748 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:15:34.748 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:15:34.748 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:15:34.748 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:15:34.748 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:15:34.748 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:15:34.748 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 23:15:34.748 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:15:34.748 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:15:34.748 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 23:15:34.748 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:15:34.758 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:15:34.758 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 23:15:34.768 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 23:15:34.768 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 23:15:34.768 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 23:15:34.768 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 470 470 226 226 28363 150\n [Camera]
17-03-17 23:15:34.968 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:15:35.438 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 662
17-03-17 23:15:35.438 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 662
17-03-17 23:15:35.438 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:15:35.438 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:15:35.438 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-17 23:15:35.438 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 662
17-03-17 23:15:35.438 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 662
17-03-17 23:15:35.438 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:15:35.438 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:15:35.438 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-17 23:15:35.628 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28363 855
17-03-17 23:15:35.778 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1005
17-03-17 23:15:35.818 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 23:15:35.818 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 23:15:35.818 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:15:35.818 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 23:15:35.818 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 23:15:35.818 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:15:35.828 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 23:15:35.828 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 23:15:35.828 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 23:15:35.838 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 23:15:36.008 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1232
17-03-17 23:15:36.008 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1232
17-03-17 23:15:36.008 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:15:36.008 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1232
17-03-17 23:15:36.008 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1232
17-03-17 23:15:36.008 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:15:36.008 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 23:15:36.008 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:15:36.008 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:15:36.008 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 23:15:36.198 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP 1424
17-03-17 23:15:36.198 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:15:36.198 -07 000000610 INF: FPGA: 'CAMDBLSNAP 470 470 226 226 28363 150' command took 2 ms to send, 1425 ms to get response, and 1433 ms overall
17-03-17 23:15:36.198 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:15:36.198 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51953125, Z-Position -0.129041007887505. ------
17-03-17 23:15:36.208 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:15:36.208 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13531 mm
17-03-17 23:15:36.208 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:15:36.208 -07 000000415 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:15:36.208 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 29558, sync = True, waitForSettling = False)
17-03-17 23:15:36.208 -07 000000501 INF: Z Motor: Moving to -0.135308 mm, started at -0.129041 mm, distance = -6.27 um
17-03-17 23:15:36.208 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 23:15:36.208 -07 000000462 INF: Y Motor: Moving to 72.3626 mm, started at 71.5195 mm, delta = 0.8431 mm
17-03-17 23:15:36.218 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:36.218 -07 000000501 INF: FPGA: Xmit ZDACW 29558\n [Z Motor]
17-03-17 23:15:36.218 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 23:15:36.228 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:15:36.228 -07 000000501 INF: FPGA: 'ZDACW 29558' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 23:15:36.228 -07 000000627 INF: FPGA: Recv YRDPOS 146472
17-03-17 23:15:36.238 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:15:36.238 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 23:15:36.238 -07 000000462 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:15:36.238 -07 000000462 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:15:36.238 -07 000000462 INF: Y Motor: Moving 1349 steps-28
17-03-17 23:15:36.248 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:15:36.248 -07 000000409 INF: FPGA: Recv ZDACR 29558
17-03-17 23:15:36.258 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:15:36.258 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:15:36.258 -07 000000501 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-17 23:15:36.388 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 23:15:36.388 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 23:15:36.388 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:15:36.388 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 23:15:36.388 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 23:15:36.398 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:15:36.398 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:15:36.398 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:15:36.398 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 23:15:36.408 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 23:15:36.438 -07 000000415 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:15:36.438 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-17 23:15:36.628 -07 000000486 INF: FPGA: Recv YMVTILE
17-03-17 23:15:36.628 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 23:15:36.678 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:15:36.678 -07 000000382 INF: FPGA: Recv YRDPOS 148172
17-03-17 23:15:36.688 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:15:36.688 -07 000000462 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:15:36.688 -07 000000462 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 23:15:36.688 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.843 mm, average velocity = 2.124 mm/sec
17-03-17 23:15:36.968 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 73, FrontChillerTemperature: 4.009895,
17-03-17 23:15:37.048 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:15:37.048 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 72. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1154, R2=1202, Total=2356. Warn if over 250 bubbles per interval.
17-03-17 23:15:37.638 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:15:37.638 -07 000000623 INF: FPGA: Recv YRDPOS 148172
17-03-17 23:15:37.648 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:15:37.648 -07 000000462 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:15:37.668 -07 000000462 INF: Y Motor: After move to 72.362610, error = -0.013000, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:15:37.668 -07 000000462 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:15:37.668 -07 000000462 INF: Y Motor: Moved to 72.3496 after 1461 ms (table move)
17-03-17 23:15:37.678 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135308 mm (DAC = 29558)
17-03-17 23:15:37.678 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:37.678 -07 000000618 INF: FPGA: Recv ZSGSRD 30351
17-03-17 23:15:37.688 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:15:37.688 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:37.688 -07 000000551 INF: FPGA: Recv ZSGSRD 30352
17-03-17 23:15:37.698 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:37.698 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:37.698 -07 000000561 INF: FPGA: Recv ZSGSRD 30354
17-03-17 23:15:37.708 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:37.708 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:37.708 -07 000000541 INF: FPGA: Recv ZSGSRD 30353
17-03-17 23:15:37.718 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:37.718 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:37.718 -07 000000409 INF: FPGA: Recv ZSGSRD 30355
17-03-17 23:15:37.728 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:37.728 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:37.728 -07 000000482 INF: FPGA: Recv ZSGSRD 30356
17-03-17 23:15:37.738 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:37.738 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:37.738 -07 000000547 INF: FPGA: Recv ZSGSRD 30349
17-03-17 23:15:37.748 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:37.748 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:37.748 -07 000000382 INF: FPGA: Recv ZSGSRD 30352
17-03-17 23:15:37.758 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:37.758 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:37.758 -07 000000541 INF: FPGA: Recv ZSGSRD 30355
17-03-17 23:15:37.768 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:37.768 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:37.768 -07 000000475 INF: FPGA: Recv ZSGSRD 30351
17-03-17 23:15:37.778 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:37.778 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:15:37.778 -07 000000501 INF: FPGA: Recv ZPIEZORD 26243
17-03-17 23:15:37.788 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:37.788 -07 000000502 INF: Z Motor: Piezo is near 36.1 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.510 V. Piezo Error = -9.0 V.
17-03-17 23:15:37.788 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.3 um, Read 10 ADC samples: Avg = 30353 (-134.5 uncal um), Error = 0.8 uncal um, Median = 30352 (-134.5 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 30349 (-134.5 uncal um), Max = 30356 (-134.5 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:15:37.788 -07 000000502 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30353, posNoise = 3, negNoise = 4
17-03-17 23:15:37.788 -07 000000502 INF: Z Motor: After move to -0.135308, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:15:37.788 -07 000000502 INF: Z Motor: Settle wait time = 1466 ms, measure time = 109 ms (allowed 150 ms), total time = 1575 ms
17-03-17 23:15:37.788 -07 000000502 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 23:15:37.838 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1628 ms
17-03-17 23:15:37.838 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:15:37.838 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:15:37.838 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:15:37.838 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:15:37.838 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:15:37.838 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:15:37.838 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:15:37.838 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:15:37.838 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:15:37.848 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:15:37.848 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:15:37.858 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 23:15:37.858 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 23:15:37.858 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:15:37.908 -07 000000547 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:15:38.108 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:15:38.108 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:15:38.108 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:15:38.108 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 661079536, 0x0, 559484976) start.
17-03-17 23:15:38.148 -07 000000478 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:15:38.148 -07 000000547 INF: FPGA: Recv CAMSNAP
17-03-17 23:15:38.148 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 285 ms overall
17-03-17 23:15:38.238 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 661079536, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 23:15:38.238 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:15:38.238 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 23:15:38.238 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 23:15:38.248 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:15:38.248 -07 000000482 INF: Autofocus start
17-03-17 23:15:38.248 -07 000000482 INF: MeasureProfile start
17-03-17 23:15:38.248 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:15:38.258 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:15:38.258 -07 000000475 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:15:38.258 -07 000000482 INF: MeasureProfile done
17-03-17 23:15:38.258 -07 000000482 INF: X=32  Z correction [um]=0.1299841
17-03-17 23:15:38.258 -07 000000482 INF: Autofocus finished
17-03-17 23:15:38.458 -07 000000409 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:15:38.458 -07 000000475 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:15:38.458 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.349609375, Z-position -0.135317463150005. ----------
17-03-17 23:15:38.468 -07 000000610 INF: Cycle	73	Tile	16	Exposure Settings		A	470	G	226	T	226	C	470
17-03-17 23:15:38.468 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28099, sync = True, waitForSettling = True)
17-03-17 23:15:38.468 -07 000000610 INF: Z Motor: Moving to -0.128629 mm, started at -0.135317 mm, distance = 6.69 um
17-03-17 23:15:38.468 -07 000000610 INF: FPGA: Xmit ZDACW 28099\n [Z Motor]
17-03-17 23:15:38.468 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 23:15:38.478 -07 000000610 INF: FPGA: 'ZDACW 28099' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:15:38.478 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:15:38.478 -07 000000429 INF: FPGA: Recv ZDACR 28099
17-03-17 23:15:38.488 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:38.488 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:15:38.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:38.638 -07 000000462 INF: FPGA: Recv ZSGSRD 29312
17-03-17 23:15:38.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:15:38.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:38.648 -07 000000541 INF: FPGA: Recv ZSGSRD 29316
17-03-17 23:15:38.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:38.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:38.658 -07 000000576 INF: FPGA: Recv ZSGSRD 29313
17-03-17 23:15:38.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:38.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:38.668 -07 000000482 INF: FPGA: Recv ZSGSRD 29310
17-03-17 23:15:38.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:38.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:38.678 -07 000000486 INF: FPGA: Recv ZSGSRD 29312
17-03-17 23:15:38.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:38.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:38.688 -07 000000462 INF: FPGA: Recv ZSGSRD 29315
17-03-17 23:15:38.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:38.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:38.698 -07 000000409 INF: FPGA: Recv ZSGSRD 29315
17-03-17 23:15:38.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:38.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:38.708 -07 000000502 INF: FPGA: Recv ZSGSRD 29315
17-03-17 23:15:38.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:38.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:38.718 -07 000000593 INF: FPGA: Recv ZSGSRD 29317
17-03-17 23:15:38.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:38.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:38.728 -07 000000576 INF: FPGA: Recv ZSGSRD 29315
17-03-17 23:15:38.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:38.738 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:15:38.738 -07 000000561 INF: FPGA: Recv ZPIEZORD 24882
17-03-17 23:15:38.748 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:38.748 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.288 V. Piezo Error = -9.7 V.
17-03-17 23:15:38.748 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.6 um, Read 10 ADC samples: Avg = 29314 (-127.9 uncal um), Error = 0.8 uncal um, Median = 29315 (-127.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29310 (-127.8 uncal um), Max = 29317 (-127.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:15:38.748 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29314, posNoise = 3, negNoise = 4
17-03-17 23:15:38.748 -07 000000610 INF: Z Motor: After move to -0.128629, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:15:38.748 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 23:15:38.748 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:15:38.748 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:15:38.758 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:15:38.758 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:15:38.758 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:15:38.758 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:15:38.758 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:15:38.758 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:15:38.758 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:15:38.758 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:15:38.758 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:15:38.758 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:15:38.758 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 23:15:38.758 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:15:38.758 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:15:38.758 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:15:38.768 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 23:15:38.768 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 23:15:38.768 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 23:15:38.768 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 23:15:38.768 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 470 470 226 226 28275 150\n [Camera]
17-03-17 23:15:38.968 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:15:39.438 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 662
17-03-17 23:15:39.438 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 662
17-03-17 23:15:39.448 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:15:39.448 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:15:39.448 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 23:15:39.448 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 662
17-03-17 23:15:39.448 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 662
17-03-17 23:15:39.448 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:15:39.448 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:15:39.448 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 23:15:39.638 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28275 855
17-03-17 23:15:39.788 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1005
17-03-17 23:15:39.828 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 23:15:39.828 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 23:15:39.828 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:15:39.828 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 23:15:39.828 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 23:15:39.828 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:15:39.828 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:15:39.828 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 23:15:39.828 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:15:39.838 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 23:15:40.008 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1231
17-03-17 23:15:40.008 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1231
17-03-17 23:15:40.008 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:15:40.008 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:15:40.008 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 23:15:40.018 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1231
17-03-17 23:15:40.018 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1231
17-03-17 23:15:40.018 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:15:40.018 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:15:40.018 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 23:15:40.208 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP 1426
17-03-17 23:15:40.208 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:15:40.208 -07 000000610 INF: FPGA: 'CAMDBLSNAP 470 470 226 226 28275 150' command took 2 ms to send, 1422 ms to get response, and 1433 ms overall
17-03-17 23:15:40.208 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:15:40.208 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.349609375, Z-Position -0.128642706734716. ------
17-03-17 23:15:40.208 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:15:40.208 -07 000000547 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13519 mm
17-03-17 23:15:40.208 -07 000000547 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:15:40.218 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:15:40.218 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:15:40.218 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:15:40.218 -07 000000415 INF: Z Motor: Entering MoveAbsStepped (DAC = 29532, sync = True, waitForSettling = False)
17-03-17 23:15:40.218 -07 000000415 INF: Z Motor: Moving to -0.135189 mm, started at -0.128643 mm, distance = -6.55 um
17-03-17 23:15:40.218 -07 000000475 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 23:15:40.218 -07 000000475 INF: Y Motor: Moving to 73.1926 mm, started at 72.3496 mm, delta = 0.8430 mm
17-03-17 23:15:40.228 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:15:40.228 -07 000000551 INF: FPGA: Recv YRDPOS 148173
17-03-17 23:15:40.238 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 23:15:40.238 -07 000000475 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:15:40.238 -07 000000415 INF: FPGA: Xmit ZDACW 29532\n [Z Motor]
17-03-17 23:15:40.238 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 23:15:40.238 -07 000000475 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:15:40.238 -07 000000475 INF: Y Motor: Moving 1348 steps-27
17-03-17 23:15:40.248 -07 000000415 INF: FPGA: 'ZDACW 29532' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 23:15:40.248 -07 000000415 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:15:40.248 -07 000000409 INF: FPGA: Recv ZDACR 29532
17-03-17 23:15:40.258 -07 000000475 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:15:40.258 -07 000000415 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:15:40.258 -07 000000415 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet))
17-03-17 23:15:40.398 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 23:15:40.398 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 23:15:40.398 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:15:40.398 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:15:40.398 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 23:15:40.398 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 23:15:40.398 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:15:40.408 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 23:15:40.408 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 23:15:40.408 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 23:15:40.418 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:15:40.418 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:15:40.628 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 23:15:40.628 -07 000000475 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-17 23:15:40.668 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:15:40.678 -07 000000429 INF: FPGA: Recv YRDPOS 149865
17-03-17 23:15:40.678 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 23:15:40.678 -07 000000475 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:15:40.678 -07 000000475 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-17 23:15:40.678 -07 000000475 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.843 mm, average velocity = 2.150 mm/sec
17-03-17 23:15:41.628 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:15:41.628 -07 000000551 INF: FPGA: Recv YRDPOS 149865
17-03-17 23:15:41.638 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:41.638 -07 000000475 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:15:41.658 -07 000000475 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:15:41.658 -07 000000475 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:15:41.658 -07 000000475 INF: Y Motor: Moved to 73.1763 after 1444 ms (table move)
17-03-17 23:15:41.668 -07 000000547 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135189 mm (DAC = 29532)
17-03-17 23:15:41.668 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:41.668 -07 000000478 INF: FPGA: Recv ZSGSRD 30341
17-03-17 23:15:41.678 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:41.678 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:41.678 -07 000000475 INF: FPGA: Recv ZSGSRD 30333
17-03-17 23:15:41.688 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:41.688 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:41.688 -07 000000618 INF: FPGA: Recv ZSGSRD 30327
17-03-17 23:15:41.698 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:41.698 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:41.698 -07 000000551 INF: FPGA: Recv ZSGSRD 30338
17-03-17 23:15:41.708 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:41.708 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:41.708 -07 000000561 INF: FPGA: Recv ZSGSRD 30341
17-03-17 23:15:41.718 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:41.718 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:41.718 -07 000000462 INF: FPGA: Recv ZSGSRD 30344
17-03-17 23:15:41.728 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:41.728 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:41.728 -07 000000593 INF: FPGA: Recv ZSGSRD 30331
17-03-17 23:15:41.738 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:41.738 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:41.738 -07 000000502 INF: FPGA: Recv ZSGSRD 30322
17-03-17 23:15:41.748 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:41.748 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:41.748 -07 000000415 INF: FPGA: Recv ZSGSRD 30335
17-03-17 23:15:41.758 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:41.758 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:41.758 -07 000000576 INF: FPGA: Recv ZSGSRD 30333
17-03-17 23:15:41.768 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:41.768 -07 000000547 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:15:41.768 -07 000000429 INF: FPGA: Recv ZPIEZORD 26283
17-03-17 23:15:41.778 -07 000000547 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:41.778 -07 000000547 INF: Z Motor: Piezo is near 36.1 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.506 V. Piezo Error = -8.9 V.
17-03-17 23:15:41.778 -07 000000547 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.2 um, Read 10 ADC samples: Avg = 30334 (-134.4 uncal um), Error = 0.8 uncal um, Median = 30334 (-134.4 uncal um), StdDev = 7 (0.0 uncal um), Range = 22 (0.1 uncal um), Min = 30322 (-134.3 uncal um), Max = 30344 (-134.5 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 12 (0.1 uncal um)
17-03-17 23:15:41.778 -07 000000547 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30334, posNoise = 10, negNoise = 12
17-03-17 23:15:41.778 -07 000000547 INF: Z Motor: After move to -0.135189, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:15:41.778 -07 000000547 INF: Z Motor: Settle wait time = 1447 ms, measure time = 110 ms (allowed 150 ms), total time = 1557 ms
17-03-17 23:15:41.778 -07 000000547 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 23:15:41.818 -07 000000547 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-17 23:15:41.818 -07 000000547 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:15:41.818 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:15:41.818 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:15:41.818 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:15:41.818 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:15:41.818 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:15:41.818 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:15:41.818 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:15:41.818 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:15:41.828 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:15:41.828 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:15:41.828 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 23:15:41.828 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 23:15:41.838 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:15:41.878 -07 000000486 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:15:42.048 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:15:42.048 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 72. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1154, R2=1202, Total=2356. Warn if over 250 bubbles per interval.
17-03-17 23:15:42.078 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:15:42.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:15:42.078 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:15:42.078 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2539065104, 0x0, 559484976) start.
17-03-17 23:15:42.118 -07 000000409 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:15:42.118 -07 000000486 INF: FPGA: Recv CAMSNAP
17-03-17 23:15:42.118 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 285 ms overall
17-03-17 23:15:42.198 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2539065104, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 23:15:42.198 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:15:42.198 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 23:15:42.198 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 23:15:42.218 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:15:42.218 -07 000000475 INF: Autofocus start
17-03-17 23:15:42.218 -07 000000475 INF: MeasureProfile start
17-03-17 23:15:42.218 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:15:42.228 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:15:42.228 -07 000000429 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:15:42.228 -07 000000475 INF: MeasureProfile done
17-03-17 23:15:42.228 -07 000000475 INF: X=16  Z correction [um]=0.0530179
17-03-17 23:15:42.228 -07 000000475 INF: Autofocus finished
17-03-17 23:15:42.338 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 73, FrontChillerTemperature: 3.993549,
17-03-17 23:15:42.428 -07 000000623 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:15:42.428 -07 000000429 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:15:42.428 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.135195403119312. ----------
17-03-17 23:15:42.428 -07 000000610 INF: Cycle	73	Tile	17	Exposure Settings		A	470	G	226	T	226	C	470
17-03-17 23:15:42.438 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28056, sync = True, waitForSettling = True)
17-03-17 23:15:42.438 -07 000000610 INF: Z Motor: Moving to -0.128432 mm, started at -0.135195 mm, distance = 6.76 um
17-03-17 23:15:42.438 -07 000000610 INF: FPGA: Xmit ZDACW 28056\n [Z Motor]
17-03-17 23:15:42.438 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 23:15:42.448 -07 000000610 INF: FPGA: 'ZDACW 28056' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:15:42.448 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:15:42.448 -07 000000623 INF: FPGA: Recv ZDACR 28056
17-03-17 23:15:42.458 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:42.458 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:15:42.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:42.608 -07 000000551 INF: FPGA: Recv ZSGSRD 29275
17-03-17 23:15:42.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:42.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:42.618 -07 000000409 INF: FPGA: Recv ZSGSRD 29280
17-03-17 23:15:42.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:42.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:42.628 -07 000000478 INF: FPGA: Recv ZSGSRD 29285
17-03-17 23:15:42.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:42.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:42.638 -07 000000627 INF: FPGA: Recv ZSGSRD 29284
17-03-17 23:15:42.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:42.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:42.668 -07 000000409 INF: FPGA: Recv ZSGSRD 29286
17-03-17 23:15:42.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:15:42.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:42.678 -07 000000547 INF: FPGA: Recv ZSGSRD 29287
17-03-17 23:15:42.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:15:42.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:42.698 -07 000000415 INF: FPGA: Recv ZSGSRD 29284
17-03-17 23:15:42.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:15:42.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:42.708 -07 000000618 INF: FPGA: Recv ZSGSRD 29290
17-03-17 23:15:42.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:42.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:42.738 -07 000000415 INF: FPGA: Recv ZSGSRD 29281
17-03-17 23:15:42.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:15:42.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:42.748 -07 000000618 INF: FPGA: Recv ZSGSRD 29284
17-03-17 23:15:42.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:42.758 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:15:42.758 -07 000000551 INF: FPGA: Recv ZPIEZORD 24871
17-03-17 23:15:42.768 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:42.768 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.281 V. Piezo Error = -9.7 V.
17-03-17 23:15:42.768 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.4 um, Read 10 ADC samples: Avg = 29284 (-127.7 uncal um), Error = 0.8 uncal um, Median = 29284 (-127.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29275 (-127.6 uncal um), Max = 29290 (-127.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 23:15:42.768 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29284, posNoise = 6, negNoise = 9
17-03-17 23:15:42.768 -07 000000610 INF: Z Motor: After move to -0.128432, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:15:42.768 -07 000000610 INF: Z Motor: MoveAbsStepped took 329 ms)
17-03-17 23:15:42.768 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:15:42.768 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:15:42.768 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:15:42.768 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:15:42.768 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:15:42.768 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:15:42.768 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:15:42.768 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:15:42.768 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 23:15:42.768 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:15:42.768 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 23:15:42.768 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:15:42.778 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 23:15:42.778 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:15:42.778 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 23:15:42.778 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:15:42.798 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 19 ms.
17-03-17 23:15:42.798 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 28 ms.
17-03-17 23:15:42.798 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 20 ms.
17-03-17 23:15:42.798 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 29 ms.
17-03-17 23:15:42.798 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 470 470 226 226 28233 150\n [Camera]
17-03-17 23:15:43.008 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:15:43.478 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 664
17-03-17 23:15:43.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 664
17-03-17 23:15:43.478 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:15:43.478 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:15:43.478 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 23:15:43.478 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 664
17-03-17 23:15:43.478 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 664
17-03-17 23:15:43.478 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:15:43.478 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:15:43.478 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 23:15:43.668 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28233 855
17-03-17 23:15:43.818 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1005
17-03-17 23:15:43.858 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 23:15:43.858 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 23:15:43.858 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:15:43.868 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:15:43.868 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 23:15:43.868 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 23:15:43.868 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:15:43.868 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 23:15:43.878 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:15:43.878 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 23:15:44.038 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1231
17-03-17 23:15:44.038 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1231
17-03-17 23:15:44.038 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:15:44.038 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:15:44.038 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 23:15:44.048 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1231
17-03-17 23:15:44.048 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1231
17-03-17 23:15:44.048 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:15:44.048 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:15:44.048 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-17 23:15:44.228 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1424
17-03-17 23:15:44.228 -07 000000482 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:15:44.228 -07 000000610 INF: FPGA: 'CAMDBLSNAP 470 470 226 226 28233 150' command took 2 ms to send, 1419 ms to get response, and 1431 ms overall
17-03-17 23:15:44.238 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:15:44.238 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17626953125, Z-Position -0.128449980370463. ------
17-03-17 23:15:44.238 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:15:44.238 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13482 mm
17-03-17 23:15:44.238 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:15:44.238 -07 000000429 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 23:15:44.238 -07 000000429 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-17 23:15:44.238 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:15:44.238 -07 000000475 INF: Z Motor: Entering MoveAbsStepped (DAC = 29452, sync = True, waitForSettling = False)
17-03-17 23:15:44.238 -07 000000475 INF: Z Motor: Moving to -0.134823 mm, started at -0.128450 mm, distance = -6.37 um
17-03-17 23:15:44.248 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:15:44.248 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:15:44.248 -07 000000618 INF: FPGA: Recv YRDPOS 149865
17-03-17 23:15:44.258 -07 000000475 INF: FPGA: Xmit ZDACW 29452\n [Z Motor]
17-03-17 23:15:44.258 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 23:15:44.258 -07 000000429 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:15:44.258 -07 000000429 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:15:44.258 -07 000000429 INF: Y Motor: Moving 1354 steps-33
17-03-17 23:15:44.258 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 23:15:44.268 -07 000000627 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:15:44.268 -07 000000475 INF: FPGA: 'ZDACW 29452' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 23:15:44.278 -07 000000429 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:15:44.288 -07 000000475 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:15:44.288 -07 000000551 INF: FPGA: Recv ZDACR 29452
17-03-17 23:15:44.298 -07 000000475 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 23:15:44.298 -07 000000475 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-17 23:15:44.448 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 23:15:44.448 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 23:15:44.448 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:15:44.448 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 23:15:44.448 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 23:15:44.448 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:15:44.448 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:15:44.448 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 23:15:44.448 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 23:15:44.458 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 23:15:44.468 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:15:44.468 -07 000000627 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 23:15:44.648 -07 000000541 INF: FPGA: Recv YMVTILE
17-03-17 23:15:44.648 -07 000000429 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 23:15:44.688 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:15:44.688 -07 000000382 INF: FPGA: Recv YRDPOS 151569
17-03-17 23:15:44.698 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:15:44.698 -07 000000429 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:15:44.698 -07 000000429 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 23:15:44.698 -07 000000429 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.846 mm, average velocity = 2.132 mm/sec
17-03-17 23:15:45.648 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:15:45.648 -07 000000502 INF: FPGA: Recv YRDPOS 151569
17-03-17 23:15:45.658 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:15:45.658 -07 000000429 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:15:45.678 -07 000000429 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:15:45.678 -07 000000429 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:15:45.678 -07 000000429 INF: Y Motor: Moved to 74.0083 after 1440 ms (table move)
17-03-17 23:15:45.688 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134823 mm (DAC = 29452)
17-03-17 23:15:45.688 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:45.688 -07 000000482 INF: FPGA: Recv ZSGSRD 30279
17-03-17 23:15:45.698 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:15:45.698 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:45.698 -07 000000415 INF: FPGA: Recv ZSGSRD 30273
17-03-17 23:15:45.708 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:45.708 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:45.708 -07 000000618 INF: FPGA: Recv ZSGSRD 30277
17-03-17 23:15:45.718 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:45.718 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:45.718 -07 000000448 INF: FPGA: Recv ZSGSRD 30280
17-03-17 23:15:45.728 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:45.728 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:45.728 -07 000000429 INF: FPGA: Recv ZSGSRD 30280
17-03-17 23:15:45.738 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:45.738 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:45.738 -07 000000547 INF: FPGA: Recv ZSGSRD 30277
17-03-17 23:15:45.748 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:45.748 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:45.748 -07 000000448 INF: FPGA: Recv ZSGSRD 30278
17-03-17 23:15:45.758 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:45.758 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:45.758 -07 000000541 INF: FPGA: Recv ZSGSRD 30273
17-03-17 23:15:45.768 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:45.768 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:45.768 -07 000000561 INF: FPGA: Recv ZSGSRD 30275
17-03-17 23:15:45.778 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:45.778 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:45.778 -07 000000462 INF: FPGA: Recv ZSGSRD 30275
17-03-17 23:15:45.788 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:45.788 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:15:45.788 -07 000000382 INF: FPGA: Recv ZPIEZORD 26200
17-03-17 23:15:45.798 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:45.798 -07 000000576 INF: Z Motor: Piezo is near 36.0 V (nominally 0 to 100 V), expect near 44.9 V, since DAC is at 4.494 V. Piezo Error = -9.0 V.
17-03-17 23:15:45.798 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.8 um, Read 10 ADC samples: Avg = 30277 (-134.0 uncal um), Error = 0.8 uncal um, Median = 30277 (-134.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 30273 (-134.0 uncal um), Max = 30280 (-134.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:15:45.798 -07 000000576 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30277, posNoise = 3, negNoise = 4
17-03-17 23:15:45.798 -07 000000576 INF: Z Motor: After move to -0.134823, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:15:45.798 -07 000000576 INF: Z Motor: Settle wait time = 1444 ms, measure time = 108 ms (allowed 150 ms), total time = 1552 ms
17-03-17 23:15:45.798 -07 000000576 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 23:15:45.848 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-17 23:15:45.848 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:15:45.848 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:15:45.848 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:15:45.848 -07 000000409 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:15:45.848 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:15:45.848 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:15:45.848 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:15:45.848 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 23:15:45.848 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:15:45.858 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:15:45.858 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:15:45.868 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 23:15:45.868 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 23:15:45.868 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:15:45.918 -07 000000409 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:15:46.118 -07 000000415 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:15:46.118 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:15:46.118 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:15:46.118 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2671610696, 0x0, 559484976) start.
17-03-17 23:15:46.158 -07 000000627 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:15:46.158 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-17 23:15:46.158 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 23:15:46.238 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2671610696, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 23:15:46.238 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:15:46.248 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 23:15:46.248 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 23:15:46.258 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:15:46.258 -07 000000382 INF: Autofocus start
17-03-17 23:15:46.258 -07 000000382 INF: MeasureProfile start
17-03-17 23:15:46.258 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:15:46.268 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:15:46.268 -07 000000547 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:15:46.268 -07 000000382 INF: MeasureProfile done
17-03-17 23:15:46.268 -07 000000382 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 23:15:46.268 -07 000000382 INF: Autofocus finished
17-03-17 23:15:46.468 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:15:46.468 -07 000000547 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:15:46.468 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.134829223027232. ----------
17-03-17 23:15:46.468 -07 000000610 INF: Cycle	73	Tile	18	Exposure Settings		A	470	G	226	T	226	C	470
17-03-17 23:15:46.468 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27947, sync = True, waitForSettling = True)
17-03-17 23:15:46.468 -07 000000610 INF: Z Motor: Moving to -0.127933 mm, started at -0.134829 mm, distance = 6.90 um
17-03-17 23:15:46.468 -07 000000610 INF: FPGA: Xmit ZDACW 27947\n [Z Motor]
17-03-17 23:15:46.478 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 23:15:46.488 -07 000000610 INF: FPGA: 'ZDACW 27947' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:15:46.488 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:15:46.488 -07 000000576 INF: FPGA: Recv ZDACR 27947
17-03-17 23:15:46.498 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:46.498 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:15:46.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:46.648 -07 000000551 INF: FPGA: Recv ZSGSRD 29205
17-03-17 23:15:46.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:15:46.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:46.658 -07 000000623 INF: FPGA: Recv ZSGSRD 29207
17-03-17 23:15:46.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:46.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:46.668 -07 000000475 INF: FPGA: Recv ZSGSRD 29203
17-03-17 23:15:46.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:46.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:46.678 -07 000000482 INF: FPGA: Recv ZSGSRD 29203
17-03-17 23:15:46.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:46.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:46.688 -07 000000486 INF: FPGA: Recv ZSGSRD 29206
17-03-17 23:15:46.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:46.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:46.698 -07 000000593 INF: FPGA: Recv ZSGSRD 29199
17-03-17 23:15:46.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:46.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:46.708 -07 000000627 INF: FPGA: Recv ZSGSRD 29201
17-03-17 23:15:46.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:46.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:46.718 -07 000000593 INF: FPGA: Recv ZSGSRD 29205
17-03-17 23:15:46.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:46.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:46.728 -07 000000623 INF: FPGA: Recv ZSGSRD 29206
17-03-17 23:15:46.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:46.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:46.738 -07 000000551 INF: FPGA: Recv ZSGSRD 29204
17-03-17 23:15:46.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:46.748 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:15:46.748 -07 000000478 INF: FPGA: Recv ZPIEZORD 24793
17-03-17 23:15:46.758 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:46.758 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.264 V. Piezo Error = -9.7 V.
17-03-17 23:15:46.758 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.9 um, Read 10 ADC samples: Avg = 29204 (-127.2 uncal um), Error = 0.8 uncal um, Median = 29204 (-127.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29199 (-127.1 uncal um), Max = 29207 (-127.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:15:46.758 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29204, posNoise = 3, negNoise = 5
17-03-17 23:15:46.758 -07 000000610 INF: Z Motor: After move to -0.127933, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:15:46.758 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 23:15:46.758 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:15:46.758 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:15:46.758 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:15:46.758 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:15:46.758 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:15:46.758 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:15:46.758 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:15:46.758 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:15:46.758 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 23:15:46.758 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:15:46.758 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 23:15:46.758 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:15:46.768 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 5 ms.
17-03-17 23:15:46.768 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:15:46.768 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:15:46.768 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:15:46.778 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 23:15:46.778 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 23:15:46.778 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 23:15:46.778 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 23:15:46.778 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 470 470 226 226 28123 150\n [Camera]
17-03-17 23:15:46.978 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:15:47.048 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:15:47.048 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 72. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1154, R2=1202, Total=2356. Warn if over 250 bubbles per interval.
17-03-17 23:15:47.448 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 662
17-03-17 23:15:47.448 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 662
17-03-17 23:15:47.448 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 662
17-03-17 23:15:47.448 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 662
17-03-17 23:15:47.448 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:15:47.448 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:15:47.448 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start.
17-03-17 23:15:47.458 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:15:47.458 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:15:47.458 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) start.
17-03-17 23:15:47.638 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28123 855
17-03-17 23:15:47.708 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 73, FrontChillerTemperature: 4.016692,
17-03-17 23:15:47.788 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1005
17-03-17 23:15:47.838 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 23:15:47.838 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 23:15:47.838 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:15:47.838 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 23:15:47.838 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 23:15:47.838 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:15:47.838 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 23:15:47.838 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:15:47.838 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 23:15:47.848 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 23:15:48.018 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1231
17-03-17 23:15:48.018 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1231
17-03-17 23:15:48.018 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:15:48.148 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1231
17-03-17 23:15:48.148 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1231
17-03-17 23:15:48.148 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:15:48.148 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:15:48.158 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) start.
17-03-17 23:15:48.158 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:15:48.158 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-17 23:15:48.208 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1424
17-03-17 23:15:48.208 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:15:48.208 -07 000000610 INF: FPGA: 'CAMDBLSNAP 470 470 226 226 28123 150' command took 2 ms to send, 1424 ms to get response, and 1431 ms overall
17-03-17 23:15:48.208 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:15:48.208 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00830078125, Z-Position -0.127936043399122. ------
17-03-17 23:15:48.208 -07 000000409 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:15:48.208 -07 000000627 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13440 mm
17-03-17 23:15:48.208 -07 000000627 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:15:48.218 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:15:48.218 -07 000000486 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 23:15:48.218 -07 000000486 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-17 23:15:48.218 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:15:48.218 -07 000000409 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 23:15:48.218 -07 000000593 INF: Z Motor: Entering MoveAbsStepped (DAC = 29361, sync = True, waitForSettling = False)
17-03-17 23:15:48.218 -07 000000593 INF: Z Motor: Moving to -0.134406 mm, started at -0.127936 mm, distance = -6.47 um
17-03-17 23:15:48.218 -07 000000541 INF: FPGA: Recv YRDPOS 151570
17-03-17 23:15:48.228 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:15:48.228 -07 000000486 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:15:48.228 -07 000000409 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:15:48.228 -07 000000486 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:15:48.228 -07 000000486 INF: Y Motor: Moving 1350 steps-29
17-03-17 23:15:48.238 -07 000000593 INF: FPGA: Xmit ZDACW 29361\n [Z Motor]
17-03-17 23:15:48.238 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 23:15:48.248 -07 000000486 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:15:48.248 -07 000000593 INF: FPGA: 'ZDACW 29361' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 23:15:48.258 -07 000000593 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:15:48.258 -07 000000462 INF: FPGA: Recv ZDACR 29361
17-03-17 23:15:48.268 -07 000000593 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:15:48.268 -07 000000593 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-17 23:15:48.428 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:15:48.428 -07 000000409 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 211 ms overall
17-03-17 23:15:48.548 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 23:15:48.548 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 23:15:48.548 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:15:48.548 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:15:48.548 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 23:15:48.548 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 23:15:48.548 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:15:48.548 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:15:48.558 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 537 ms.
17-03-17 23:15:48.558 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 23:15:48.618 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-17 23:15:48.618 -07 000000486 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 390 ms overall
17-03-17 23:15:48.648 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:15:48.648 -07 000000482 INF: FPGA: Recv YRDPOS 153256
17-03-17 23:15:48.658 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:15:48.658 -07 000000486 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:15:48.658 -07 000000486 INF: Y Motor: Position error before settling (table move) = -42 encoder counts (-0.021 mm)
17-03-17 23:15:48.658 -07 000000486 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.844 mm, average velocity = 2.159 mm/sec
17-03-17 23:15:49.608 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:15:49.608 -07 000000429 INF: FPGA: Recv YRDPOS 153256
17-03-17 23:15:49.618 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:15:49.618 -07 000000486 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:15:49.628 -07 000000486 INF: Y Motor: After move to 74.852608, error = -0.020576, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:15:49.628 -07 000000486 INF: Y Motor: Position error after settling (table move) = -42 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:15:49.628 -07 000000486 INF: Y Motor: Moved to 74.8320 after 1416 ms (table move)
17-03-17 23:15:49.638 -07 000000627 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134406 mm (DAC = 29361)
17-03-17 23:15:49.638 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:49.638 -07 000000409 INF: FPGA: Recv ZSGSRD 30210
17-03-17 23:15:49.648 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:15:49.648 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:49.648 -07 000000551 INF: FPGA: Recv ZSGSRD 30210
17-03-17 23:15:49.658 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:49.658 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:49.658 -07 000000501 INF: FPGA: Recv ZSGSRD 30206
17-03-17 23:15:49.668 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:49.668 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:49.668 -07 000000429 INF: FPGA: Recv ZSGSRD 30205
17-03-17 23:15:49.678 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:49.678 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:49.678 -07 000000576 INF: FPGA: Recv ZSGSRD 30211
17-03-17 23:15:49.688 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:49.688 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:49.688 -07 000000547 INF: FPGA: Recv ZSGSRD 30216
17-03-17 23:15:49.698 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:49.698 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:49.698 -07 000000551 INF: FPGA: Recv ZSGSRD 30215
17-03-17 23:15:49.708 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:49.708 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:49.708 -07 000000382 INF: FPGA: Recv ZSGSRD 30217
17-03-17 23:15:49.718 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:49.718 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:49.718 -07 000000502 INF: FPGA: Recv ZSGSRD 30213
17-03-17 23:15:49.728 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:49.728 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:49.728 -07 000000501 INF: FPGA: Recv ZSGSRD 30211
17-03-17 23:15:49.738 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:49.738 -07 000000627 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:15:49.738 -07 000000462 INF: FPGA: Recv ZPIEZORD 26131
17-03-17 23:15:49.748 -07 000000627 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:49.748 -07 000000627 INF: Z Motor: Piezo is near 35.8 V (nominally 0 to 100 V), expect near 44.8 V, since DAC is at 4.480 V. Piezo Error = -9.0 V.
17-03-17 23:15:49.748 -07 000000627 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.4 um, Read 10 ADC samples: Avg = 30211 (-133.6 uncal um), Error = 0.8 uncal um, Median = 30211 (-133.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30205 (-133.6 uncal um), Max = 30217 (-133.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:15:49.748 -07 000000627 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30211, posNoise = 6, negNoise = 6
17-03-17 23:15:49.748 -07 000000627 INF: Z Motor: After move to -0.134406, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:15:49.748 -07 000000627 INF: Z Motor: Settle wait time = 1419 ms, measure time = 108 ms (allowed 150 ms), total time = 1527 ms
17-03-17 23:15:49.748 -07 000000627 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 23:15:49.798 -07 000000627 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1580 ms
17-03-17 23:15:49.798 -07 000000627 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:15:49.798 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:15:49.798 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:15:49.798 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:15:49.798 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:15:49.798 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:15:49.798 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:15:49.798 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:15:49.798 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:15:49.808 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 5 ms.
17-03-17 23:15:49.808 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:15:49.818 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 23:15:49.818 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 23:15:49.818 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:15:49.858 -07 000000415 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:15:50.058 -07 000000593 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:15:50.058 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:15:50.068 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:15:50.068 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-17 23:15:50.098 -07 000000551 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:15:50.098 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-17 23:15:50.098 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 23:15:50.178 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 23:15:50.178 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:15:50.188 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:15:50.188 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 23:15:50.198 -07 000000409 INF: Autofocus start
17-03-17 23:15:50.198 -07 000000409 INF: MeasureProfile start
17-03-17 23:15:50.198 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:15:50.198 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:15:50.208 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:15:50.208 -07 000000448 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:15:50.208 -07 000000409 INF: MeasureProfile done
17-03-17 23:15:50.208 -07 000000409 INF: X=-45  Z correction [um]=-0.2224548
17-03-17 23:15:50.208 -07 000000409 INF: Autofocus finished
17-03-17 23:15:50.408 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:15:50.408 -07 000000448 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 204 ms overall
17-03-17 23:15:50.408 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83203125, Z-position -0.134405225025875. ----------
17-03-17 23:15:50.418 -07 000000610 INF: Cycle	73	Tile	19	Exposure Settings		A	470	G	226	T	226	C	470
17-03-17 23:15:50.418 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27825, sync = True, waitForSettling = True)
17-03-17 23:15:50.418 -07 000000610 INF: Z Motor: Moving to -0.127375 mm, started at -0.134405 mm, distance = 7.03 um
17-03-17 23:15:50.418 -07 000000610 INF: FPGA: Xmit ZDACW 27825\n [Z Motor]
17-03-17 23:15:50.418 -07 000000409 INF: FPGA: Recv ZDACW
17-03-17 23:15:50.428 -07 000000610 INF: FPGA: 'ZDACW 27825' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:15:50.428 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:15:50.428 -07 000000502 INF: FPGA: Recv ZDACR 27825
17-03-17 23:15:50.438 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:50.438 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:15:50.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:50.588 -07 000000475 INF: FPGA: Recv ZSGSRD 29120
17-03-17 23:15:50.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:15:50.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:50.598 -07 000000382 INF: FPGA: Recv ZSGSRD 29119
17-03-17 23:15:50.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:50.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:50.608 -07 000000462 INF: FPGA: Recv ZSGSRD 29114
17-03-17 23:15:50.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:50.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:50.618 -07 000000561 INF: FPGA: Recv ZSGSRD 29113
17-03-17 23:15:50.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:50.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:50.628 -07 000000415 INF: FPGA: Recv ZSGSRD 29114
17-03-17 23:15:50.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:50.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:50.638 -07 000000576 INF: FPGA: Recv ZSGSRD 29116
17-03-17 23:15:50.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:50.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:50.648 -07 000000482 INF: FPGA: Recv ZSGSRD 29115
17-03-17 23:15:50.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:50.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:50.658 -07 000000623 INF: FPGA: Recv ZSGSRD 29113
17-03-17 23:15:50.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:50.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:50.668 -07 000000486 INF: FPGA: Recv ZSGSRD 29109
17-03-17 23:15:50.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:50.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:15:50.678 -07 000000501 INF: FPGA: Recv ZSGSRD 29121
17-03-17 23:15:50.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:50.688 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:15:50.688 -07 000000382 INF: FPGA: Recv ZPIEZORD 24687
17-03-17 23:15:50.698 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:50.698 -07 000000610 INF: Z Motor: Piezo is near 32.7 V (nominally 0 to 100 V), expect near 42.5 V, since DAC is at 4.246 V. Piezo Error = -9.7 V.
17-03-17 23:15:50.698 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.4 um, Read 10 ADC samples: Avg = 29115 (-126.6 uncal um), Error = 0.8 uncal um, Median = 29114 (-126.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29109 (-126.6 uncal um), Max = 29121 (-126.6 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:15:50.698 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29115, posNoise = 6, negNoise = 6
17-03-17 23:15:50.698 -07 000000610 INF: Z Motor: After move to -0.127375, error = 0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:15:50.698 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 23:15:50.698 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:15:50.698 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:15:50.698 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:15:50.698 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:15:50.698 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:15:50.698 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:15:50.698 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:15:50.698 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:15:50.698 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:15:50.698 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:15:50.698 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:15:50.698 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:15:50.698 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 23:15:50.708 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:15:50.708 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:15:50.708 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:15:50.718 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-17 23:15:50.718 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 23:15:50.718 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-17 23:15:50.718 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 23:15:50.718 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 470 470 226 226 28001 150\n [Camera]
17-03-17 23:15:50.918 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:15:51.388 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 662
17-03-17 23:15:51.388 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 662
17-03-17 23:15:51.388 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:15:51.398 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 662
17-03-17 23:15:51.398 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 662
17-03-17 23:15:51.398 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:15:51.398 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:15:51.398 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 23:15:51.398 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:15:51.398 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 23:15:51.588 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28001 855
17-03-17 23:15:51.738 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1005
17-03-17 23:15:51.778 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 23:15:51.778 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 23:15:51.778 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:15:51.788 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 23:15:51.788 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 23:15:51.788 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:15:51.788 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:15:51.788 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 23:15:51.788 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:15:51.798 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 23:15:51.958 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1231
17-03-17 23:15:51.958 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1231
17-03-17 23:15:51.958 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:15:52.078 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1231
17-03-17 23:15:52.078 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:15:52.078 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1231
17-03-17 23:15:52.078 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 72. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1154, R2=1202, Total=2356. Warn if over 250 bubbles per interval.
17-03-17 23:15:52.078 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:15:52.078 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:15:52.078 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 23:15:52.078 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:15:52.078 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 23:15:52.148 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1424
17-03-17 23:15:52.148 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:15:52.148 -07 000000610 INF: FPGA: 'CAMDBLSNAP 470 470 226 226 28001 150' command took 4 ms to send, 1419 ms to get response, and 1431 ms overall
17-03-17 23:15:52.488 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 23:15:52.488 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 23:15:52.488 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:15:52.488 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 23:15:52.488 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 23:15:52.488 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:15:52.488 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:15:52.488 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 528 ms.
17-03-17 23:15:52.488 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 23:15:52.488 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:15:52.498 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 421 ms.
17-03-17 23:15:52.528 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 23:15:52.528 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 23:15:52.578 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 43 ms.
17-03-17 23:15:52.588 -07 000000610 INF: Enabling Skipping AutoFocus in the next 2 cycles.
17-03-17 23:15:52.588 -07 000000610 INF: Imaging Cycle 73: ScanTilesCommand Cycle 73 time end. Duration was 160622 ms.
17-03-17 23:15:52.588 -07 000000610 INF: =================== Cycle #73 ===================
17-03-17 23:15:52.588 -07 000000610 INF: ===================  ===================
17-03-17 23:15:52.588 -07 000000627 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 23:15:52.588 -07 000000502 INF: FPGA: Recv EXLED1ADCR 24
17-03-17 23:15:52.598 -07 000000627 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:15:52.598 -07 000000627 INF: GreenLED: Using Green data: Photodiode ADC 24 --> 0.0 mW (old method), or 1.7 mW (new method). Difference = 1.7 mW
17-03-17 23:15:52.598 -07 000000627 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 73, FrontChillerTemperature: 4.016692, FrontChillerHeatSinkTemperature: 0.211325, AmbientTemperature: 18.74685, FlowCellCompartmentTemperature: 21.99399, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.43224, GreenLEDSensorTemperature: 26.57205, PhotodiodePowerAdcGreen: 24, PhotodiodePowerMwGreen: 1.744678
17-03-17 23:15:52.648 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.