17-03-17 23:15:52.698 -07 000000610 INF: =================== Cycle #74 ===================
17-03-17 23:15:52.698 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-17 23:15:52.698 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8320 mm, delta = 0.5485 mm
17-03-17 23:15:52.698 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:15:52.698 -07 000000448 INF: FPGA: Recv YRDPOS 153257
17-03-17 23:15:52.708 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:15:52.708 -07 000000610 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:15:52.708 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-17 23:15:52.708 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-17 23:15:52.708 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-17 23:15:52.828 -07 000000448 INF: FPGA: Recv YMVTO 154379 878
17-03-17 23:15:52.828 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 112 ms to get response, and 118 ms overall
17-03-17 23:15:52.828 -07 000000610 INF: Y Motor: Position error before settling = 0 encoder counts (0.000 mm)
17-03-17 23:15:52.828 -07 000000610 INF: Y Motor: To move from 74.833 to 75.381 (0.549 mm) should take 877 steps, but required 878 steps (0.549 mm). Slippage = 0.001 mm (0.00%).
17-03-17 23:15:52.828 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 118 ms, distance = 0.549 mm, average velocity = 4.649 mm/sec
17-03-17 23:15:53.078 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 74, FrontChillerTemperature: 4.007176,
17-03-17 23:15:55.828 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:15:55.828 -07 000000486 INF: FPGA: Recv YRDPOS 154387
17-03-17 23:15:55.838 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:15:55.838 -07 000000610 INF: Y Motor: Encoder = 154387 = motor step 120614.8 = 75.3843 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:15:55.868 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.003697, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:15:55.868 -07 000000610 INF: Y Motor: Position error after settling = 8 encoder counts (0.004 mm), Delta during settling = 8 counts (0.004 mm)
17-03-17 23:15:55.868 -07 000000610 INF: Y Motor: Moved to 75.3843 after 3168 ms
17-03-17 23:15:55.888 -07 000000610 INF: =================== Cycle #74, Flow Cell Temp 60° ===================
17-03-17 23:15:55.888 -07 000000610 INF: =================== Cycle #74, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-17 23:15:55.888 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-17 23:15:55.888 -07 000000475 INF: FPGA: Recv TEC2TEMP 
17-03-17 23:15:55.898 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:15:55.898 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 23:15:55.898 -07 000000382 INF: FPGA: Recv TEC2EN 
17-03-17 23:15:55.908 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:15:55.908 -07 000000610 INF: =================== Cycle #74, Flow Cell Temp 60° ===================
17-03-17 23:15:55.908 -07 000000610 INF: =================== Cycle #74 ===================
17-03-17 23:15:55.908 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 23:15:55.908 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:15:55.938 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 23:15:55.938 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-17 23:15:55.938 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 23:15:56.238 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 23:15:56.258 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 23:15:56.258 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 23:15:56.308 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:15:56.328 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 23:15:56.328 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 23:15:56.428 -07 000000610 INF: =================== Cycle #74, Pumping Reagent PR2 (3) ===================
17-03-17 23:15:56.428 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 23:15:56.508 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:15:56.538 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 23:15:56.538 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 23:15:56.538 -07 000000610 INF: =================== Cycle #74, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 23:15:56.668 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 23:15:56.708 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:15:57.048 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:15:57.048 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 73. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1154, R2=1202, Total=2356. Warn if over 250 bubbles per interval.
17-03-17 23:15:58.438 -07 000000409 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 74, FrontChillerTemperature: 3.993549,
17-03-17 23:15:59.838 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:15:59.868 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:16:00.288 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:16:00.318 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:16:00.738 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:16:00.768 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:16:00.768 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 23:16:00.768 -07 000000610 INF: =================== Cycle #74, Pumping Reagent PR2 (3) ===================
17-03-17 23:16:00.898 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:16:00.928 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 23:16:00.928 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 23:16:01.058 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:16:01.088 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 23:16:01.088 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 23:16:01.088 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 23:16:01.218 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 23:16:01.248 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:16:01.678 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:16:01.708 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:16:01.708 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 23:16:01.708 -07 000000610 INF: =================== Cycle #74 ===================
17-03-17 23:16:02.048 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 4 R1 4
17-03-17 23:16:02.058 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 73. Bubbles during last 5000 ms interval: R1=4, R2=4, Total=8. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1158, R2=1206, Total=2364. Warn if over 250 bubbles per interval.
17-03-17 23:16:02.928 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 23:16:02.928 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-17 23:16:02.928 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:16:02.948 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 23:16:02.948 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-17 23:16:02.948 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-17 23:16:03.078 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 23:16:03.098 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-17 23:16:03.098 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-17 23:16:03.148 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:16:03.168 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 23:16:03.168 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 23:16:03.268 -07 000000610 INF: =================== Cycle #74, Pumping Reagent CMS (4) ===================
17-03-17 23:16:03.268 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 23:16:03.268 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:16:03.298 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 23:16:03.298 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 23:16:03.298 -07 000000610 INF: =================== Cycle #74, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-17 23:16:03.428 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 23:16:03.468 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:16:03.798 -07 000000409 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 74, FrontChillerTemperature: 4.003063,
17-03-17 23:16:04.908 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:16:04.938 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:16:05.358 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:16:05.388 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:16:05.388 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 23:16:05.388 -07 000000610 INF: =================== Cycle #74, Pumping Reagent CMS (4) ===================
17-03-17 23:16:05.518 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:16:05.548 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 23:16:05.548 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 23:16:05.678 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:16:05.708 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 23:16:05.708 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 23:16:05.708 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 23:16:05.838 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 23:16:05.868 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:16:06.298 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:16:06.328 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:16:06.328 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 23:16:06.328 -07 000000610 INF: =================== Cycle #74 ===================
17-03-17 23:16:07.048 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 2
17-03-17 23:16:07.048 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 73. Bubbles during last 5000 ms interval: R1=2, R2=2, Total=4. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1160, R2=1208, Total=2368. Warn if over 250 bubbles per interval.
17-03-17 23:16:07.548 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-17 23:16:07.548 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 23:16:07.548 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:16:07.568 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 23:16:07.568 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-17 23:16:07.568 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-17 23:16:07.718 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 23:16:07.738 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-17 23:16:07.738 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-17 23:16:07.788 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:16:07.808 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 23:16:07.808 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 23:16:07.908 -07 000000610 INF: =================== Cycle #74, Pumping Reagent PR2 (3) ===================
17-03-17 23:16:07.908 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 23:16:07.908 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:16:07.938 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 23:16:07.938 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 23:16:07.938 -07 000000610 INF: =================== Cycle #74, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 23:16:08.068 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 23:16:08.108 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:16:08.978 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:16:09.008 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:16:09.008 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 23:16:09.008 -07 000000610 INF: =================== Cycle #74, Pumping Reagent PR2 (3) ===================
17-03-17 23:16:09.138 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:16:09.158 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 74, FrontChillerTemperature: 3.988112,
17-03-17 23:16:09.168 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 23:16:09.168 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 23:16:09.298 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:16:09.328 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 23:16:09.328 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 23:16:09.328 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 23:16:09.458 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 23:16:09.488 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:16:09.918 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:16:09.948 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:16:09.948 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 23:16:09.948 -07 000000610 INF: =================== Cycle #74 ===================
17-03-17 23:16:09.948 -07 000000409 INF: WaitCommand(10000) start
17-03-17 23:16:09.948 -07 000000541 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 23:16:09.948 -07 000000541 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 23:16:11.168 -07 000000541 INF: AsyncDelayTimer waited 1214ms
17-03-17 23:16:11.168 -07 000000541 INF: LanePump: Xmit /1?\r
17-03-17 23:16:11.198 -07 000000541 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 23:16:11.198 -07 000000541 INF: LanePump: Current Position of Pump is: 1110
17-03-17 23:16:11.328 -07 000000541 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 23:16:11.368 -07 000000541 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:16:12.048 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 23:16:12.048 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 73. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1160, R2=1209, Total=2369. Warn if over 250 bubbles per interval.
17-03-17 23:16:12.898 -07 000000541 INF: LanePump: Xmit /1Q\r
17-03-17 23:16:12.928 -07 000000541 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:16:13.348 -07 000000541 INF: LanePump: Xmit /1Q\r
17-03-17 23:16:13.378 -07 000000541 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:16:13.378 -07 000000541 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 23:16:13.378 -07 000000541 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 23:16:13.378 -07 000000541 INF: ===================  ===================
17-03-17 23:16:14.518 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 74, FrontChillerTemperature: 3.996267,
17-03-17 23:16:17.048 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:16:17.048 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 73. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1160, R2=1209, Total=2369. Warn if over 250 bubbles per interval.
17-03-17 23:16:19.878 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 74, FrontChillerTemperature: 4.009895,
17-03-17 23:16:19.958 -07 000000409 INF: WaitCommand(10000) end
17-03-17 23:16:19.958 -07 000000610 INF: =================== Cycle #74, Pumping Reagent PR2 (3) ===================
17-03-17 23:16:19.958 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-17 23:16:19.958 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:16:19.998 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 23:16:19.998 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 23:16:19.998 -07 000000610 INF: =================== Cycle #74, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 23:16:20.128 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-17 23:16:20.168 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:16:22.048 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 1
17-03-17 23:16:22.048 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 73. Bubbles during last 5000 ms interval: R1=1, R2=0, Total=1. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1161, R2=1209, Total=2370. Warn if over 250 bubbles per interval.
17-03-17 23:16:25.238 -07 000000409 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 74, FrontChillerTemperature: 3.979922,
17-03-17 23:16:26.298 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:16:26.328 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:16:26.748 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:16:26.778 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:16:27.048 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 7 R1 7
17-03-17 23:16:27.048 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 73. Bubbles during last 5000 ms interval: R1=7, R2=7, Total=14. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1168, R2=1216, Total=2384. Warn if over 250 bubbles per interval.
17-03-17 23:16:27.198 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:16:27.228 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:16:27.648 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:16:27.678 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:16:28.098 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:16:28.128 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:16:28.128 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-17 23:16:28.128 -07 000000610 INF: =================== Cycle #74, Pumping Reagent PR2 (3) ===================
17-03-17 23:16:28.258 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:16:28.288 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 23:16:28.288 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 23:16:28.418 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:16:28.448 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 23:16:28.448 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 23:16:28.448 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 23:16:28.578 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 23:16:28.608 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:16:29.038 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:16:29.068 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:16:29.068 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 23:16:29.068 -07 000000610 INF: =================== Cycle #74 ===================
17-03-17 23:16:30.288 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-17 23:16:30.288 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-17 23:16:30.288 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:16:30.308 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 23:16:30.308 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-17 23:16:30.308 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-17 23:16:30.518 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 23:16:30.538 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-17 23:16:30.538 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-17 23:16:30.588 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:16:30.598 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 74, FrontChillerTemperature: 3.98264,
17-03-17 23:16:30.608 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 23:16:30.608 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 23:16:30.708 -07 000000610 INF: =================== Cycle #74, Pumping Reagent IMT (1) ===================
17-03-17 23:16:30.708 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 23:16:30.708 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:16:30.738 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 23:16:30.738 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 23:16:30.738 -07 000000610 INF: =================== Cycle #74, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-17 23:16:30.868 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 23:16:30.908 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:16:32.048 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 3 R1 2
17-03-17 23:16:32.048 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 73. Bubbles during last 5000 ms interval: R1=2, R2=3, Total=5. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1170, R2=1219, Total=2389. Warn if over 250 bubbles per interval.
17-03-17 23:16:32.348 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:16:32.378 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:16:32.798 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:16:32.828 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:16:32.828 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 23:16:32.828 -07 000000610 INF: =================== Cycle #74, Pumping Reagent IMT (1) ===================
17-03-17 23:16:32.958 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:16:32.988 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 23:16:32.988 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 23:16:33.118 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:16:33.148 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 23:16:33.148 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 23:16:33.148 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 23:16:33.278 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 23:16:33.308 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:16:33.738 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:16:33.768 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:16:33.768 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 23:16:33.768 -07 000000610 INF: =================== Cycle #74 ===================
17-03-17 23:16:34.988 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 23:16:34.988 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 23:16:34.988 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:16:35.008 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 23:16:35.008 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-17 23:16:35.008 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 23:16:35.238 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 23:16:35.258 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-17 23:16:35.258 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-17 23:16:35.308 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:16:35.328 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 23:16:35.328 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 23:16:35.428 -07 000000610 INF: =================== Cycle #74, Pumping Reagent PR2 (3) ===================
17-03-17 23:16:35.428 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 23:16:35.428 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:16:35.458 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 23:16:35.458 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 23:16:35.458 -07 000000610 INF: =================== Cycle #74, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 23:16:35.588 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 23:16:35.628 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:16:35.958 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 74, FrontChillerTemperature: 3.978563,
17-03-17 23:16:36.498 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:16:36.528 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:16:36.528 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 23:16:36.528 -07 000000610 INF: =================== Cycle #74, Pumping Reagent PR2 (3) ===================
17-03-17 23:16:36.658 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:16:36.688 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 23:16:36.688 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 23:16:36.818 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:16:36.848 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 23:16:36.848 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 23:16:36.848 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 23:16:36.978 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 23:16:37.008 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:16:37.048 -07 000000409 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 6 R1 4
17-03-17 23:16:37.048 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 73. Bubbles during last 5000 ms interval: R1=4, R2=6, Total=10. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1174, R2=1225, Total=2399. Warn if over 250 bubbles per interval.
17-03-17 23:16:37.438 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:16:37.468 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:16:37.468 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 23:16:37.468 -07 000000610 INF: =================== Cycle #74 ===================
17-03-17 23:16:37.468 -07 000000610 INF: =================== Cycle #74, Flow Cell Temp 65° ===================
17-03-17 23:16:37.468 -07 000000610 INF: =================== Cycle #74, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-17 23:16:37.468 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-17 23:16:37.468 -07 000000478 INF: FPGA: Recv TEC2TEMP 
17-03-17 23:16:37.478 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:16:37.478 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 23:16:37.478 -07 000000448 INF: FPGA: Recv TEC2EN 
17-03-17 23:16:37.488 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:16:37.488 -07 000000610 INF: =================== Cycle #74, Flow Cell Temp 65° ===================
17-03-17 23:16:37.488 -07 000000610 INF: =================== Cycle #74 ===================
17-03-17 23:16:37.488 -07 000000610 INF: WaitCommand(30000) start
17-03-17 23:16:41.318 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 74, FrontChillerTemperature: 3.986717,
17-03-17 23:16:42.048 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 3
17-03-17 23:16:42.048 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 73. Bubbles during last 5000 ms interval: R1=3, R2=0, Total=3. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1177, R2=1225, Total=2402. Warn if over 250 bubbles per interval.
17-03-17 23:16:46.678 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 74, FrontChillerTemperature: 3.993549,
17-03-17 23:16:47.048 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 23:16:47.048 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 73. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1177, R2=1226, Total=2403. Warn if over 250 bubbles per interval.
17-03-17 23:16:52.038 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 74, FrontChillerTemperature: 3.996267,
17-03-17 23:16:52.048 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 23:16:52.048 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 73. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1177, R2=1227, Total=2404. Warn if over 250 bubbles per interval.
17-03-17 23:16:57.048 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 23:16:57.048 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 73. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1177, R2=1228, Total=2405. Warn if over 250 bubbles per interval.
17-03-17 23:16:57.398 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 74, FrontChillerTemperature: 3.990831,
17-03-17 23:17:02.048 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:17:02.048 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 73. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1177, R2=1228, Total=2405. Warn if over 250 bubbles per interval.
17-03-17 23:17:02.758 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 74, FrontChillerTemperature: 3.996267,
17-03-17 23:17:07.048 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:17:07.048 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 73. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1177, R2=1228, Total=2405. Warn if over 250 bubbles per interval.
17-03-17 23:17:07.498 -07 000000610 INF: WaitCommand(30000) end
17-03-17 23:17:07.498 -07 000000610 INF: =================== Cycle #74, Pumping Reagent PR2 (3) ===================
17-03-17 23:17:07.498 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-17 23:17:07.598 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:17:07.628 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 23:17:07.628 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 23:17:07.628 -07 000000610 INF: =================== Cycle #74, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 23:17:07.758 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-17 23:17:07.798 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:17:08.118 -07 000000409 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 74, FrontChillerTemperature: 4.016692,
17-03-17 23:17:08.338 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:17:08.368 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:17:08.368 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-17 23:17:08.368 -07 000000610 INF: =================== Cycle #74, Pumping Reagent PR2 (3) ===================
17-03-17 23:17:08.498 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:17:08.528 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 23:17:08.528 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 23:17:08.658 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:17:08.688 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 23:17:08.688 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 23:17:08.688 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 23:17:08.818 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 23:17:08.848 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:17:09.278 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:17:09.308 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:17:09.308 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 23:17:09.308 -07 000000610 INF: =================== Cycle #74 ===================
17-03-17 23:17:09.308 -07 000000475 INF: WaitCommand(30000) start
17-03-17 23:17:09.308 -07 000000429 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 23:17:09.308 -07 000000429 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 23:17:10.528 -07 000000429 INF: AsyncDelayTimer waited 1216ms
17-03-17 23:17:10.528 -07 000000429 INF: LanePump: Xmit /1?\r
17-03-17 23:17:10.558 -07 000000429 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 23:17:10.558 -07 000000429 INF: LanePump: Current Position of Pump is: 1920
17-03-17 23:17:10.688 -07 000000429 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 23:17:10.728 -07 000000429 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:17:12.048 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 23:17:12.058 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 73. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1177, R2=1229, Total=2406. Warn if over 250 bubbles per interval.
17-03-17 23:17:13.068 -07 000000429 INF: LanePump: Xmit /1Q\r
17-03-17 23:17:13.098 -07 000000429 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:17:13.478 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 74, FrontChillerTemperature: 4.020806,
17-03-17 23:17:13.518 -07 000000429 INF: LanePump: Xmit /1Q\r
17-03-17 23:17:13.548 -07 000000429 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:17:13.548 -07 000000429 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-17 23:17:13.548 -07 000000429 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 23:17:13.548 -07 000000429 INF: ===================  ===================
17-03-17 23:17:17.048 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:17:17.058 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 73. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1177, R2=1229, Total=2406. Warn if over 250 bubbles per interval.
17-03-17 23:17:18.838 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 74, FrontChillerTemperature: 3.993549,
17-03-17 23:17:22.058 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:17:22.058 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 73. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1177, R2=1229, Total=2406. Warn if over 250 bubbles per interval.
17-03-17 23:17:24.198 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 74, FrontChillerTemperature: 4.004458,
17-03-17 23:17:27.058 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:17:27.058 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 73. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1177, R2=1229, Total=2406. Warn if over 250 bubbles per interval.
17-03-17 23:17:29.558 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 74, FrontChillerTemperature: 4.000345,
17-03-17 23:17:32.058 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:17:32.058 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 73. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1177, R2=1229, Total=2406. Warn if over 250 bubbles per interval.
17-03-17 23:17:34.918 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 74, FrontChillerTemperature: 4.003063,
17-03-17 23:17:37.058 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:17:37.058 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 73. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1177, R2=1229, Total=2406. Warn if over 250 bubbles per interval.
17-03-17 23:17:39.318 -07 000000475 INF: WaitCommand(30000) end
17-03-17 23:17:39.318 -07 000000610 INF: =================== Cycle #74, Flow Cell Temp 22° ===================
17-03-17 23:17:39.318 -07 000000610 INF: =================== Cycle #74, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-17 23:17:39.318 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-17 23:17:39.328 -07 000000415 INF: FPGA: Recv TEC2TEMP 
17-03-17 23:17:39.328 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 23:17:39.328 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 23:17:39.328 -07 000000541 INF: FPGA: Recv TEC2EN 
17-03-17 23:17:39.338 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:17:39.338 -07 000000610 INF: =================== Cycle #74, Flow Cell Temp 22° ===================
17-03-17 23:17:39.338 -07 000000610 INF: =================== Cycle #74 ===================
17-03-17 23:17:39.338 -07 000000610 INF: =================== Cycle #74, Pumping Reagent PR2 (3) ===================
17-03-17 23:17:39.338 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 23:17:39.338 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:17:39.378 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 23:17:39.378 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 23:17:39.378 -07 000000610 INF: =================== Cycle #74, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 23:17:39.508 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 23:17:39.548 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:17:40.278 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 74, FrontChillerTemperature: 3.997626,
17-03-17 23:17:42.058 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:17:42.058 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 73. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1177, R2=1229, Total=2406. Warn if over 250 bubbles per interval.
17-03-17 23:17:42.678 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:17:42.708 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:17:43.128 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:17:43.158 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:17:43.578 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:17:43.608 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:17:43.608 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 23:17:43.608 -07 000000610 INF: =================== Cycle #74, Pumping Reagent PR2 (3) ===================
17-03-17 23:17:43.738 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:17:43.768 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 23:17:43.768 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 23:17:43.898 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:17:43.928 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 23:17:43.928 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 23:17:43.928 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 23:17:44.058 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 23:17:44.088 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:17:44.518 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:17:44.548 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:17:44.548 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 23:17:44.548 -07 000000610 INF: =================== Cycle #74 ===================
17-03-17 23:17:45.638 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 74, FrontChillerTemperature: 3.98264,
17-03-17 23:17:45.768 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-17 23:17:45.768 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-17 23:17:45.768 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:17:45.788 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 23:17:45.788 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-17 23:17:45.788 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-17 23:17:45.938 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 23:17:45.958 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 23:17:45.958 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 23:17:46.008 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:17:46.028 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 23:17:46.028 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 23:17:46.128 -07 000000610 INF: =================== Cycle #74, Pumping Reagent USM (2) ===================
17-03-17 23:17:46.128 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 23:17:46.128 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:17:46.158 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 23:17:46.158 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 23:17:46.158 -07 000000610 INF: =================== Cycle #74, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-17 23:17:46.288 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 23:17:46.328 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:17:47.058 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:17:47.058 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 73. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1177, R2=1229, Total=2406. Warn if over 250 bubbles per interval.
17-03-17 23:17:47.768 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:17:47.798 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:17:48.218 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:17:48.248 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:17:48.248 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 23:17:48.248 -07 000000610 INF: =================== Cycle #74, Pumping Reagent USM (2) ===================
17-03-17 23:17:48.378 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:17:48.408 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 23:17:48.408 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 23:17:48.538 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:17:48.568 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 23:17:48.568 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 23:17:48.568 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 23:17:48.698 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 23:17:48.728 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:17:49.158 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:17:49.188 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:17:49.188 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 23:17:49.188 -07 000000610 INF: =================== Cycle #74 ===================
17-03-17 23:17:50.408 -07 000000610 INF: AsyncDelayTimer waited 1217ms
17-03-17 23:17:50.408 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 23:17:50.408 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:17:50.428 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 23:17:50.428 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-17 23:17:50.428 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 23:17:50.578 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 23:17:50.598 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 23:17:50.598 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 23:17:50.648 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:17:50.668 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 23:17:50.668 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 23:17:50.768 -07 000000610 INF: =================== Cycle #74, Pumping Reagent PR2 (3) ===================
17-03-17 23:17:50.768 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 23:17:50.768 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:17:50.798 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 23:17:50.798 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 23:17:50.798 -07 000000610 INF: =================== Cycle #74, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 23:17:50.928 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 23:17:50.968 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:17:50.998 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 74, FrontChillerTemperature: 3.981281,
17-03-17 23:17:51.838 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:17:51.868 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:17:51.868 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 23:17:51.868 -07 000000610 INF: =================== Cycle #74, Pumping Reagent PR2 (3) ===================
17-03-17 23:17:51.998 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:17:52.028 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 23:17:52.028 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 23:17:52.058 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:17:52.058 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 73. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1177, R2=1229, Total=2406. Warn if over 250 bubbles per interval.
17-03-17 23:17:52.158 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:17:52.188 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 23:17:52.188 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 23:17:52.188 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 23:17:52.318 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 23:17:52.348 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:17:52.778 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:17:52.808 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:17:52.808 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 23:17:52.808 -07 000000610 INF: =================== Cycle #74 ===================
17-03-17 23:17:52.808 -07 000000561 INF: WaitCommand(10000) start
17-03-17 23:17:52.808 -07 000000409 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 23:17:52.808 -07 000000409 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 23:17:54.028 -07 000000409 INF: AsyncDelayTimer waited 1214ms
17-03-17 23:17:54.028 -07 000000409 INF: LanePump: Xmit /1?\r
17-03-17 23:17:54.058 -07 000000409 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 23:17:54.058 -07 000000409 INF: LanePump: Current Position of Pump is: 1110
17-03-17 23:17:54.188 -07 000000409 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 23:17:54.228 -07 000000409 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:17:55.758 -07 000000409 INF: LanePump: Xmit /1Q\r
17-03-17 23:17:55.788 -07 000000409 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:17:56.208 -07 000000409 INF: LanePump: Xmit /1Q\r
17-03-17 23:17:56.238 -07 000000409 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:17:56.238 -07 000000409 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 23:17:56.238 -07 000000409 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 23:17:56.238 -07 000000409 INF: ===================  ===================
17-03-17 23:17:56.358 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 74, FrontChillerTemperature: 3.988112,
17-03-17 23:17:57.058 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 1
17-03-17 23:17:57.058 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 73. Bubbles during last 5000 ms interval: R1=1, R2=0, Total=1. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1178, R2=1229, Total=2407. Warn if over 250 bubbles per interval.
17-03-17 23:18:01.718 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 74, FrontChillerTemperature: 3.986717,
17-03-17 23:18:02.058 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:18:02.058 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 73. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1178, R2=1229, Total=2407. Warn if over 250 bubbles per interval.
17-03-17 23:18:02.818 -07 000000561 INF: WaitCommand(10000) end
17-03-17 23:18:02.818 -07 000000610 INF: =================== Cycle #74, Imaging ===================
17-03-17 23:18:02.818 -07 000000610 INF: Imaging Cycle 74: ScanTilesCommand Cycle 74 time start.
17-03-17 23:18:02.828 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-17 23:18:02.828 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:18:02.848 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 23:18:02.848 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-17 23:18:02.848 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-17 23:18:03.148 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 23:18:03.168 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 23:18:03.168 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 23:18:03.218 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:18:03.238 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 23:18:03.238 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:18:03.238 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:18:03.238 -07 000000501 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-17 23:18:03.238 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:18:03.238 -07 000000501 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-17 23:18:03.248 -07 000000482 INF: FPGA: Recv EXLED1ON 
17-03-17 23:18:03.248 -07 000000501 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 3 ms to get response, and 5 ms overall
17-03-17 23:18:03.248 -07 000000501 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-17 23:18:03.248 -07 000000547 INF: FPGA: Recv EXLED1ADCR 23194
17-03-17 23:18:03.258 -07 000000501 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:18:03.258 -07 000000501 INF: RedLED: Using Red data: Photodiode ADC 23194 --> 7.4 mW (old method), or 205.6 mW (new method). Difference = 198.1 mW
17-03-17 23:18:03.258 -07 000000501 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-17 23:18:03.258 -07 000000576 INF: FPGA: Recv EXLED1OFF 
17-03-17 23:18:03.268 -07 000000501 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:03.268 -07 000000501 INF: RedLED: LED was on for 16 ms
17-03-17 23:18:03.268 -07 000000501 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 22 ms.
17-03-17 23:18:03.268 -07 000000501 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-17 23:18:03.268 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:18:03.268 -07 000000501 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-17 23:18:03.268 -07 000000623 INF: FPGA: Recv EXLED2ON 
17-03-17 23:18:03.278 -07 000000501 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:18:03.278 -07 000000501 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 23:18:03.278 -07 000000409 INF: FPGA: Recv EXLED1ADCR 2102
17-03-17 23:18:03.288 -07 000000501 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:03.288 -07 000000501 INF: GreenLED: Using Green data: Photodiode ADC 2102 --> 0.9 mW (old method), or 182.6 mW (new method). Difference = 181.7 mW
17-03-17 23:18:03.288 -07 000000501 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-17 23:18:03.288 -07 000000618 INF: FPGA: Recv EXLED2OFF 
17-03-17 23:18:03.298 -07 000000501 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:03.298 -07 000000501 INF: GreenLED: LED was on for 20 ms
17-03-17 23:18:03.298 -07 000000501 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms.
17-03-17 23:18:03.298 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 23:18:03.298 -07 000000462 INF: FPGA: Recv EMCUR 
17-03-17 23:18:03.308 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:18:03.308 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-17 23:18:03.808 -07 000000501 INF: FPGA: Recv EMOUT
17-03-17 23:18:03.808 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 23:18:03.808 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-17 23:18:03.808 -07 000000547 INF: FPGA: Recv EMCUR 
17-03-17 23:18:03.818 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:18:03.818 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:18:03.818 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.38427734375, Z-Position -0.127364288518505. ------
17-03-17 23:18:03.818 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:18:03.818 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17930 mm
17-03-17 23:18:03.818 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:18:03.818 -07 000000627 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 23:18:03.818 -07 000000627 INF: Y Motor: Moving to 59.9126 mm, started at 75.3843 mm, delta = -15.4717 mm
17-03-17 23:18:03.818 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 39168, sync = True, waitForSettling = False)
17-03-17 23:18:03.818 -07 000000561 INF: Z Motor: Moving to -0.179300 mm, started at -0.127364 mm, distance = -51.94 um
17-03-17 23:18:03.818 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:18:03.828 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:18:03.828 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:18:03.828 -07 000000541 INF: FPGA: Recv YRDPOS 154388
17-03-17 23:18:03.838 -07 000000561 INF: FPGA: Xmit ZDACW 39168\n [Z Motor]
17-03-17 23:18:03.838 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 23:18:03.838 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 23:18:03.838 -07 000000627 INF: Y Motor: Encoder = 154388 = motor step 120615.6 = 75.3848 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:18:03.838 -07 000000627 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-17 23:18:03.838 -07 000000627 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 23:18:03.848 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:18:03.848 -07 000000561 INF: FPGA: 'ZDACW 39168' command took 2 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 23:18:03.858 -07 000000627 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 23:18:03.868 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:18:03.868 -07 000000623 INF: FPGA: Recv ZDACR 39168
17-03-17 23:18:03.878 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:18:03.878 -07 000000561 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-17 23:18:04.048 -07 000000429 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:18:04.048 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 223 ms overall
17-03-17 23:18:05.538 -07 000000551 INF: FPGA: Recv YMVTO 122703 24783
17-03-17 23:18:05.538 -07 000000627 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1676 ms to get response, and 1700 ms overall
17-03-17 23:18:05.538 -07 000000627 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 23:18:05.538 -07 000000627 INF: Y Motor: To move from 75.385 to 59.913 (-15.472 mm) should take 24755 steps, but required 24783 steps (15.489 mm). Slippage = 0.018 mm (0.00%).
17-03-17 23:18:05.538 -07 000000627 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1700 ms, distance = 15.472 mm, average velocity = 9.101 mm/sec
17-03-17 23:18:07.058 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:18:07.058 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 73. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1178, R2=1229, Total=2407. Warn if over 250 bubbles per interval.
17-03-17 23:18:07.078 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 74, FrontChillerTemperature: 3.99219,
17-03-17 23:18:08.388 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:18:08.388 -07 000000541 INF: FPGA: Recv YRDPOS 122697
17-03-17 23:18:08.398 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:18:08.398 -07 000000627 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:18:08.418 -07 000000627 INF: Y Motor: After move to 59.912609, error = -0.001965, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:18:08.418 -07 000000627 INF: Y Motor: Position error after settling = -4 encoder counts (-0.002 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-17 23:18:08.418 -07 000000627 INF: Y Motor: Moved to 59.9106 after 4599 ms
17-03-17 23:18:08.428 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.179300 mm (DAC = 39168)
17-03-17 23:18:08.428 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:08.428 -07 000000547 INF: FPGA: Recv ZSGSRD 37210
17-03-17 23:18:08.438 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:18:08.438 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:08.438 -07 000000448 INF: FPGA: Recv ZSGSRD 37202
17-03-17 23:18:08.448 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:08.448 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:08.448 -07 000000475 INF: FPGA: Recv ZSGSRD 37196
17-03-17 23:18:08.458 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:08.458 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:08.458 -07 000000478 INF: FPGA: Recv ZSGSRD 37200
17-03-17 23:18:08.468 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:08.468 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:08.468 -07 000000409 INF: FPGA: Recv ZSGSRD 37197
17-03-17 23:18:08.478 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:08.478 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:08.478 -07 000000576 INF: FPGA: Recv ZSGSRD 37198
17-03-17 23:18:08.488 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:08.488 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:08.488 -07 000000415 INF: FPGA: Recv ZSGSRD 37201
17-03-17 23:18:08.498 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:08.498 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:08.498 -07 000000627 INF: FPGA: Recv ZSGSRD 37201
17-03-17 23:18:08.508 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:08.508 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:08.508 -07 000000501 INF: FPGA: Recv ZSGSRD 37197
17-03-17 23:18:08.518 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:08.518 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:08.518 -07 000000409 INF: FPGA: Recv ZSGSRD 37202
17-03-17 23:18:08.528 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:08.528 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:18:08.528 -07 000000502 INF: FPGA: Recv ZPIEZORD 33580
17-03-17 23:18:08.538 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:08.538 -07 000000462 INF: Z Motor: Piezo is near 51.7 V (nominally 0 to 100 V), expect near 59.8 V, since DAC is at 5.977 V. Piezo Error = -8.0 V.
17-03-17 23:18:08.538 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.3 um, Read 10 ADC samples: Avg = 37200 (-178.4 uncal um), Error = 0.9 uncal um, Median = 37200 (-178.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 37196 (-178.4 uncal um), Max = 37210 (-178.5 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:18:08.538 -07 000000462 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37200, posNoise = 10, negNoise = 4
17-03-17 23:18:08.538 -07 000000462 INF: Z Motor: After move to -0.179300, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:18:08.538 -07 000000462 INF: Z Motor: Settle wait time = 4604 ms, measure time = 108 ms (allowed 150 ms), total time = 4712 ms
17-03-17 23:18:08.538 -07 000000462 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 23:18:08.588 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4764 ms
17-03-17 23:18:08.588 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:18:08.588 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:18:08.588 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:18:08.588 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:18:08.588 -07 000000409 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:18:08.588 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:18:08.588 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:18:08.588 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:18:08.588 -07 000000448 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 23:18:08.618 -07 000000448 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-17 23:18:08.618 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:18:08.618 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 23:18:08.618 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:18:08.638 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 23:18:08.638 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 42 ms.
17-03-17 23:18:08.638 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:18:08.678 -07 000000409 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:18:08.878 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:18:08.878 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:18:08.878 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:18:08.888 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2469168248, 0x0, 559484976) start.
17-03-17 23:18:08.918 -07 000000501 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:18:08.918 -07 000000551 INF: FPGA: Recv CAMSNAP
17-03-17 23:18:08.918 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 23:18:09.008 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2469168248, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 23:18:09.008 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:18:09.008 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:18:09.008 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 23:18:09.118 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:18:09.118 -07 000000486 INF: Image SNR check: start
17-03-17 23:18:09.118 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:18:09.128 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:18:09.128 -07 000000482 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:18:09.128 -07 000000486 INF: Image SNR check: pass  [peak (Max-Min)=55.39]
17-03-17 23:18:09.128 -07 000000486 INF: Autofocus start
17-03-17 23:18:09.128 -07 000000486 INF: MeasureProfile start
17-03-17 23:18:09.138 -07 000000486 INF: MeasureProfile done
17-03-17 23:18:09.148 -07 000000486 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 23:18:09.148 -07 000000486 INF: Autofocus finished
17-03-17 23:18:09.328 -07 000000593 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:18:09.328 -07 000000482 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:18:09.328 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91064453125, Z-position -0.179304043684643. ----------
17-03-17 23:18:09.328 -07 000000610 INF: Cycle	74	Tile	1	Exposure Settings		A	472	G	227	T	227	C	472
17-03-17 23:18:09.338 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37648, sync = True, waitForSettling = True)
17-03-17 23:18:09.338 -07 000000610 INF: Z Motor: Moving to -0.172341 mm, started at -0.179304 mm, distance = 6.96 um
17-03-17 23:18:09.338 -07 000000610 INF: FPGA: Xmit ZDACW 37648\n [Z Motor]
17-03-17 23:18:09.338 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 23:18:09.348 -07 000000610 INF: FPGA: 'ZDACW 37648' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:18:09.348 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:18:09.348 -07 000000502 INF: FPGA: Recv ZDACR 37648
17-03-17 23:18:09.358 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:09.358 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:18:09.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:09.508 -07 000000478 INF: FPGA: Recv ZSGSRD 36119
17-03-17 23:18:09.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:18:09.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:09.518 -07 000000551 INF: FPGA: Recv ZSGSRD 36117
17-03-17 23:18:09.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:09.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:09.528 -07 000000547 INF: FPGA: Recv ZSGSRD 36123
17-03-17 23:18:09.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:09.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:09.538 -07 000000623 INF: FPGA: Recv ZSGSRD 36112
17-03-17 23:18:09.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:09.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:09.548 -07 000000502 INF: FPGA: Recv ZSGSRD 36115
17-03-17 23:18:09.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:09.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:09.558 -07 000000618 INF: FPGA: Recv ZSGSRD 36123
17-03-17 23:18:09.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:09.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:09.568 -07 000000593 INF: FPGA: Recv ZSGSRD 36112
17-03-17 23:18:09.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:09.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:09.578 -07 000000541 INF: FPGA: Recv ZSGSRD 36116
17-03-17 23:18:09.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:09.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:09.588 -07 000000593 INF: FPGA: Recv ZSGSRD 36114
17-03-17 23:18:09.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:09.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:09.598 -07 000000541 INF: FPGA: Recv ZSGSRD 36119
17-03-17 23:18:09.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:09.608 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:18:09.608 -07 000000429 INF: FPGA: Recv ZPIEZORD 32091
17-03-17 23:18:09.618 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:09.618 -07 000000610 INF: Z Motor: Piezo is near 48.6 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.745 V. Piezo Error = -8.9 V.
17-03-17 23:18:09.618 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.3 um, Read 10 ADC samples: Avg = 36117 (-171.5 uncal um), Error = 0.9 uncal um, Median = 36116 (-171.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36112 (-171.4 uncal um), Max = 36123 (-171.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:18:09.618 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36117, posNoise = 6, negNoise = 5
17-03-17 23:18:09.618 -07 000000610 INF: Z Motor: After move to -0.172341, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:18:09.618 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 23:18:09.618 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:18:09.618 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:18:09.618 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:18:09.618 -07 000000409 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:18:09.618 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:18:09.618 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:18:09.618 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:18:09.618 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:18:09.618 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:18:09.618 -07 000000547 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 23:18:09.618 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:18:09.618 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:18:09.628 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 23:18:09.628 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:18:09.638 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 23:18:09.638 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:18:09.648 -07 000000547 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-17 23:18:09.648 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:18:09.648 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 23:18:09.648 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:18:09.658 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 23:18:09.658 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 41 ms.
17-03-17 23:18:09.668 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 472 472 227 227 37825 150\n [Camera]
17-03-17 23:18:09.868 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:18:10.338 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 664
17-03-17 23:18:10.338 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 664
17-03-17 23:18:10.338 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:18:10.338 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 664
17-03-17 23:18:10.338 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 664
17-03-17 23:18:10.338 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:18:10.458 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:18:10.458 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2602438304, 0x0, 418435064) start.
17-03-17 23:18:10.458 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:18:10.458 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 23:18:10.528 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37825 857
17-03-17 23:18:10.678 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1007
17-03-17 23:18:10.858 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 23:18:10.858 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 23:18:10.858 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:18:10.858 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2602438304, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 23:18:10.858 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 23:18:10.858 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:18:10.858 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:18:10.858 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 524 ms.
17-03-17 23:18:10.858 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:18:10.868 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 529 ms.
17-03-17 23:18:10.908 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1234
17-03-17 23:18:10.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1234
17-03-17 23:18:10.908 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:18:10.908 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1234
17-03-17 23:18:10.908 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1234
17-03-17 23:18:10.908 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:18:10.918 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:18:10.918 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2483844328, 0x0, 418435064) start.
17-03-17 23:18:10.918 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:18:10.918 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 23:18:11.098 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP 1426
17-03-17 23:18:11.098 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:18:11.098 -07 000000610 INF: FPGA: 'CAMDBLSNAP 472 472 227 227 37825 150' command took 2 ms to send, 1425 ms to get response, and 1434 ms overall
17-03-17 23:18:11.098 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:18:11.098 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91064453125, Z-Position -0.172346621935115. ------
17-03-17 23:18:11.098 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:18:11.108 -07 000000623 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17832 mm
17-03-17 23:18:11.108 -07 000000623 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:18:11.108 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:18:11.108 -07 000000478 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 23:18:11.108 -07 000000478 INF: Y Motor: Moving to 60.7426 mm, started at 59.9106 mm, delta = 0.8320 mm
17-03-17 23:18:11.108 -07 000000448 INF: Z Motor: Entering MoveAbsStepped (DAC = 38954, sync = True, waitForSettling = False)
17-03-17 23:18:11.108 -07 000000448 INF: Z Motor: Moving to -0.178320 mm, started at -0.172347 mm, distance = -5.97 um
17-03-17 23:18:11.118 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:18:11.118 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:18:11.118 -07 000000551 INF: FPGA: Recv YRDPOS 122697
17-03-17 23:18:11.128 -07 000000448 INF: FPGA: Xmit ZDACW 38954\n [Z Motor]
17-03-17 23:18:11.128 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 23:18:11.128 -07 000000478 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:18:11.128 -07 000000478 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:18:11.128 -07 000000478 INF: Y Motor: Moving 1331 steps2
17-03-17 23:18:11.128 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 23:18:11.138 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:18:11.138 -07 000000448 INF: FPGA: 'ZDACW 38954' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 23:18:11.148 -07 000000478 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:18:11.158 -07 000000448 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:18:11.158 -07 000000576 INF: FPGA: Recv ZDACR 38954
17-03-17 23:18:11.168 -07 000000448 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:18:11.168 -07 000000448 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-17 23:18:11.308 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 23:18:11.308 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 23:18:11.308 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:18:11.318 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2483844328, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 23:18:11.318 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 23:18:11.318 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:18:11.318 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:18:11.318 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 23:18:11.318 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:18:11.328 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 23:18:11.338 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:18:11.338 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 23:18:11.528 -07 000000551 INF: FPGA: Recv YMVTILE
17-03-17 23:18:11.528 -07 000000478 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 399 ms overall
17-03-17 23:18:11.558 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:18:11.558 -07 000000547 INF: FPGA: Recv YRDPOS 124380
17-03-17 23:18:11.568 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:18:11.568 -07 000000478 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:18:11.568 -07 000000478 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-17 23:18:11.568 -07 000000478 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.832 mm, average velocity = 2.085 mm/sec
17-03-17 23:18:12.058 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:18:12.058 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 73. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1178, R2=1229, Total=2407. Warn if over 250 bubbles per interval.
17-03-17 23:18:12.438 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 74, FrontChillerTemperature: 3.996267,
17-03-17 23:18:12.518 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:18:12.518 -07 000000541 INF: FPGA: Recv YRDPOS 124380
17-03-17 23:18:12.528 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:18:12.528 -07 000000478 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:18:12.548 -07 000000478 INF: Y Motor: After move to 60.742607, error = -0.010185, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:18:12.548 -07 000000478 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:18:12.548 -07 000000478 INF: Y Motor: Moved to 60.7324 after 1441 ms (table move)
17-03-17 23:18:12.558 -07 000000623 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178320 mm (DAC = 38954)
17-03-17 23:18:12.568 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:12.568 -07 000000462 INF: FPGA: Recv ZSGSRD 37050
17-03-17 23:18:12.578 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:18:12.578 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:12.578 -07 000000593 INF: FPGA: Recv ZSGSRD 37048
17-03-17 23:18:12.588 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:12.588 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:12.588 -07 000000551 INF: FPGA: Recv ZSGSRD 37043
17-03-17 23:18:12.598 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:12.598 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:12.598 -07 000000482 INF: FPGA: Recv ZSGSRD 37047
17-03-17 23:18:12.608 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:12.608 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:12.608 -07 000000547 INF: FPGA: Recv ZSGSRD 37054
17-03-17 23:18:12.618 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:18:12.618 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:12.618 -07 000000382 INF: FPGA: Recv ZSGSRD 37050
17-03-17 23:18:12.628 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:12.628 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:12.628 -07 000000541 INF: FPGA: Recv ZSGSRD 37054
17-03-17 23:18:12.638 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:12.638 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:12.638 -07 000000618 INF: FPGA: Recv ZSGSRD 37047
17-03-17 23:18:12.648 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:12.648 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:12.648 -07 000000409 INF: FPGA: Recv ZSGSRD 37045
17-03-17 23:18:12.658 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:12.658 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:12.658 -07 000000475 INF: FPGA: Recv ZSGSRD 37049
17-03-17 23:18:12.668 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:12.668 -07 000000623 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:18:12.668 -07 000000561 INF: FPGA: Recv ZPIEZORD 33341
17-03-17 23:18:12.678 -07 000000623 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:12.678 -07 000000623 INF: Z Motor: Piezo is near 51.2 V (nominally 0 to 100 V), expect near 59.4 V, since DAC is at 5.944 V. Piezo Error = -8.2 V.
17-03-17 23:18:12.678 -07 000000623 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.3 um, Read 10 ADC samples: Avg = 37049 (-177.4 uncal um), Error = 0.9 uncal um, Median = 37048 (-177.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 37043 (-177.4 uncal um), Max = 37054 (-177.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:18:12.678 -07 000000623 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37049, posNoise = 5, negNoise = 6
17-03-17 23:18:12.678 -07 000000623 INF: Z Motor: After move to -0.178320, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:18:12.678 -07 000000623 INF: Z Motor: Settle wait time = 1443 ms, measure time = 121 ms (allowed 150 ms), total time = 1564 ms
17-03-17 23:18:12.678 -07 000000623 INF: Z Motor: Waiting extra 29 ms after reading position to reach expected total of 150 ms
17-03-17 23:18:12.708 -07 000000623 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-17 23:18:12.708 -07 000000623 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:18:12.708 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:18:12.708 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:18:12.708 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:18:12.708 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:18:12.708 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:18:12.708 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:18:12.708 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 23:18:12.708 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:18:12.718 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:18:12.718 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:18:12.728 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 23:18:12.728 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 23:18:12.728 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:18:12.778 -07 000000541 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:18:12.978 -07 000000478 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:18:12.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:18:12.978 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:18:12.978 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-17 23:18:13.008 -07 000000618 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:18:13.018 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-17 23:18:13.018 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 285 ms overall
17-03-17 23:18:13.098 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 23:18:13.098 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:18:13.108 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:18:13.108 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 23:18:13.118 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:18:13.118 -07 000000448 INF: Autofocus start
17-03-17 23:18:13.118 -07 000000448 INF: MeasureProfile start
17-03-17 23:18:13.118 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:18:13.128 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:18:13.128 -07 000000482 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:18:13.128 -07 000000448 INF: MeasureProfile done
17-03-17 23:18:13.128 -07 000000448 INF: X=0  Z correction [um]=-0.0713522
17-03-17 23:18:13.128 -07 000000448 INF: Autofocus finished
17-03-17 23:18:13.328 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:18:13.328 -07 000000482 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:18:13.328 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.732421875, Z-position -0.178333987651237. ----------
17-03-17 23:18:13.328 -07 000000610 INF: Cycle	74	Tile	2	Exposure Settings		A	472	G	227	T	227	C	472
17-03-17 23:18:13.338 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37451, sync = True, waitForSettling = True)
17-03-17 23:18:13.338 -07 000000610 INF: Z Motor: Moving to -0.171440 mm, started at -0.178334 mm, distance = 6.89 um
17-03-17 23:18:13.338 -07 000000610 INF: FPGA: Xmit ZDACW 37451\n [Z Motor]
17-03-17 23:18:13.338 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 23:18:13.348 -07 000000610 INF: FPGA: 'ZDACW 37451' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:18:13.348 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:18:13.348 -07 000000462 INF: FPGA: Recv ZDACR 37451
17-03-17 23:18:13.358 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:13.358 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:18:13.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:13.508 -07 000000561 INF: FPGA: Recv ZSGSRD 35976
17-03-17 23:18:13.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:13.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:13.518 -07 000000462 INF: FPGA: Recv ZSGSRD 35986
17-03-17 23:18:13.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:13.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:13.528 -07 000000448 INF: FPGA: Recv ZSGSRD 35976
17-03-17 23:18:13.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:13.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:13.538 -07 000000593 INF: FPGA: Recv ZSGSRD 35970
17-03-17 23:18:13.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:13.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:13.548 -07 000000561 INF: FPGA: Recv ZSGSRD 35980
17-03-17 23:18:13.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:13.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:13.558 -07 000000475 INF: FPGA: Recv ZSGSRD 35980
17-03-17 23:18:13.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:13.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:13.568 -07 000000627 INF: FPGA: Recv ZSGSRD 35977
17-03-17 23:18:13.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:13.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:13.578 -07 000000429 INF: FPGA: Recv ZSGSRD 35976
17-03-17 23:18:13.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:13.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:13.588 -07 000000486 INF: FPGA: Recv ZSGSRD 35978
17-03-17 23:18:13.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:13.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:13.598 -07 000000618 INF: FPGA: Recv ZSGSRD 35979
17-03-17 23:18:13.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:13.608 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:18:13.608 -07 000000501 INF: FPGA: Recv ZPIEZORD 31948
17-03-17 23:18:13.618 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:13.618 -07 000000610 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.715 V. Piezo Error = -8.9 V.
17-03-17 23:18:13.618 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.4 um, Read 10 ADC samples: Avg = 35978 (-170.6 uncal um), Error = 0.9 uncal um, Median = 35978 (-170.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35970 (-170.5 uncal um), Max = 35986 (-170.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 23:18:13.618 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35978, posNoise = 8, negNoise = 8
17-03-17 23:18:13.618 -07 000000610 INF: Z Motor: After move to -0.171440, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:18:13.618 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 23:18:13.618 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:18:13.618 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:18:13.618 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:18:13.618 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:18:13.618 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:18:13.618 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:18:13.618 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:18:13.618 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:18:13.618 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:18:13.618 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:18:13.618 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:18:13.618 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:18:13.628 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:18:13.628 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:18:13.628 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:18:13.628 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:18:13.638 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 23:18:13.638 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:18:13.648 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 17 ms.
17-03-17 23:18:13.648 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 23:18:13.648 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 472 472 227 227 37628 150\n [Camera]
17-03-17 23:18:13.848 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:18:14.318 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 664
17-03-17 23:18:14.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 664
17-03-17 23:18:14.318 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:18:14.318 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:18:14.318 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2637860568, 0x0, 391868352) start.
17-03-17 23:18:14.318 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 664
17-03-17 23:18:14.318 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 664
17-03-17 23:18:14.318 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:18:14.318 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:18:14.318 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 23:18:14.508 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37628 857
17-03-17 23:18:14.658 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1007
17-03-17 23:18:14.768 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2637860568, 0x0, 391868352) end. Duration was 452 ms.
17-03-17 23:18:14.768 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 452 ms.
17-03-17 23:18:14.768 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:18:14.768 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 449 ms.
17-03-17 23:18:14.768 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 450 ms.
17-03-17 23:18:14.768 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:18:14.778 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:18:14.778 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 457 ms.
17-03-17 23:18:14.778 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:18:14.778 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 462 ms.
17-03-17 23:18:14.888 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1234
17-03-17 23:18:14.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1234
17-03-17 23:18:14.888 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:18:14.888 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1234
17-03-17 23:18:14.888 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1234
17-03-17 23:18:14.888 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:18:14.898 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:18:14.898 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 23:18:14.898 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:18:14.898 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 23:18:15.078 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1426
17-03-17 23:18:15.078 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:18:15.078 -07 000000610 INF: FPGA: 'CAMDBLSNAP 472 472 227 227 37628 150' command took 2 ms to send, 1425 ms to get response, and 1433 ms overall
17-03-17 23:18:15.078 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:18:15.078 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.732421875, Z-Position -0.171453656447411. ------
17-03-17 23:18:15.088 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:18:15.088 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17812 mm
17-03-17 23:18:15.088 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:18:15.088 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:18:15.088 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 23:18:15.088 -07 000000501 INF: Y Motor: Moving to 61.5726 mm, started at 60.7324 mm, delta = 0.8402 mm
17-03-17 23:18:15.088 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 38910, sync = True, waitForSettling = False)
17-03-17 23:18:15.088 -07 000000623 INF: Z Motor: Moving to -0.178119 mm, started at -0.171454 mm, distance = -6.66 um
17-03-17 23:18:15.098 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:18:15.098 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:15.098 -07 000000429 INF: FPGA: Recv YRDPOS 124381
17-03-17 23:18:15.108 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 23:18:15.108 -07 000000501 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:18:15.108 -07 000000623 INF: FPGA: Xmit ZDACW 38910\n [Z Motor]
17-03-17 23:18:15.108 -07 000000501 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:18:15.108 -07 000000501 INF: Y Motor: Moving 1344 steps-21
17-03-17 23:18:15.108 -07 000000409 INF: FPGA: Recv ZDACW
17-03-17 23:18:15.118 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:18:15.118 -07 000000623 INF: FPGA: 'ZDACW 38910' command took 1 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 23:18:15.128 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:18:15.138 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:18:15.138 -07 000000547 INF: FPGA: Recv ZDACR 38910
17-03-17 23:18:15.148 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:18:15.148 -07 000000623 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 23:18:15.288 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 23:18:15.288 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 23:18:15.288 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:18:15.288 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 23:18:15.288 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 23:18:15.288 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:18:15.288 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:18:15.298 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:18:15.298 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 23:18:15.298 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 23:18:15.318 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:18:15.318 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 23:18:15.498 -07 000000486 INF: FPGA: Recv YMVTILE
17-03-17 23:18:15.498 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 23:18:15.538 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:18:15.548 -07 000000593 INF: FPGA: Recv YRDPOS 126081
17-03-17 23:18:15.548 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 23:18:15.548 -07 000000501 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:18:15.548 -07 000000501 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 23:18:15.548 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.840 mm, average velocity = 2.132 mm/sec
17-03-17 23:18:16.498 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:18:16.498 -07 000000576 INF: FPGA: Recv YRDPOS 126082
17-03-17 23:18:16.508 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:18:16.508 -07 000000501 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:18:16.528 -07 000000501 INF: Y Motor: After move to 61.572609, error = -0.009132, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:18:16.528 -07 000000501 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 23:18:16.528 -07 000000501 INF: Y Motor: Moved to 61.5635 after 1439 ms (table move)
17-03-17 23:18:16.538 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178119 mm (DAC = 38910)
17-03-17 23:18:16.538 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:16.538 -07 000000482 INF: FPGA: Recv ZSGSRD 37025
17-03-17 23:18:16.548 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:16.548 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:16.548 -07 000000541 INF: FPGA: Recv ZSGSRD 37017
17-03-17 23:18:16.558 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:16.558 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:16.558 -07 000000415 INF: FPGA: Recv ZSGSRD 37010
17-03-17 23:18:16.568 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:16.568 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:16.568 -07 000000623 INF: FPGA: Recv ZSGSRD 37014
17-03-17 23:18:16.578 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:16.578 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:16.578 -07 000000501 INF: FPGA: Recv ZSGSRD 37020
17-03-17 23:18:16.588 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:16.588 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:16.588 -07 000000551 INF: FPGA: Recv ZSGSRD 37019
17-03-17 23:18:16.598 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:16.598 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:16.598 -07 000000541 INF: FPGA: Recv ZSGSRD 37022
17-03-17 23:18:16.608 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:16.608 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:16.608 -07 000000415 INF: FPGA: Recv ZSGSRD 37010
17-03-17 23:18:16.618 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:16.618 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:16.618 -07 000000623 INF: FPGA: Recv ZSGSRD 37017
17-03-17 23:18:16.628 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:16.628 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:16.628 -07 000000501 INF: FPGA: Recv ZSGSRD 37014
17-03-17 23:18:16.638 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:16.638 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:18:16.638 -07 000000551 INF: FPGA: Recv ZPIEZORD 33316
17-03-17 23:18:16.648 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:16.648 -07 000000382 INF: Z Motor: Piezo is near 51.2 V (nominally 0 to 100 V), expect near 59.4 V, since DAC is at 5.937 V. Piezo Error = -8.2 V.
17-03-17 23:18:16.648 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.1 um, Read 10 ADC samples: Avg = 37017 (-177.2 uncal um), Error = 0.9 uncal um, Median = 37017 (-177.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 37010 (-177.2 uncal um), Max = 37025 (-177.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 23:18:16.648 -07 000000382 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37017, posNoise = 8, negNoise = 7
17-03-17 23:18:16.648 -07 000000382 INF: Z Motor: After move to -0.178119, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:18:16.648 -07 000000382 INF: Z Motor: Settle wait time = 1444 ms, measure time = 110 ms (allowed 150 ms), total time = 1554 ms
17-03-17 23:18:16.648 -07 000000382 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 23:18:16.688 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1598 ms
17-03-17 23:18:16.688 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:18:16.688 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:18:16.688 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:18:16.688 -07 000000409 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:18:16.688 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:18:16.688 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:18:16.688 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:18:16.698 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:18:16.698 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:18:16.698 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:18:16.698 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:18:16.708 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 23:18:16.708 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 23:18:16.708 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:18:16.748 -07 000000409 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:18:16.948 -07 000000547 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:18:16.948 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:18:16.948 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:18:16.958 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602569432, 0x0, 559484976) start.
17-03-17 23:18:16.988 -07 000000409 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:18:16.988 -07 000000593 INF: FPGA: Recv CAMSNAP
17-03-17 23:18:16.988 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 23:18:17.058 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:18:17.068 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2602569432, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 23:18:17.068 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:18:17.068 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:18:17.068 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 23:18:17.078 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 73. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1178, R2=1229, Total=2407. Warn if over 250 bubbles per interval.
17-03-17 23:18:17.098 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:18:17.098 -07 000000551 INF: Autofocus start
17-03-17 23:18:17.098 -07 000000551 INF: MeasureProfile start
17-03-17 23:18:17.098 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:18:17.108 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:18:17.108 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:18:17.108 -07 000000551 INF: MeasureProfile done
17-03-17 23:18:17.108 -07 000000551 INF: X=16  Z correction [um]=0.01042744
17-03-17 23:18:17.108 -07 000000551 INF: Autofocus finished
17-03-17 23:18:17.308 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:18:17.308 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-17 23:18:17.308 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.5634765625, Z-position -0.1781284128627. ----------
17-03-17 23:18:17.308 -07 000000610 INF: Cycle	74	Tile	3	Exposure Settings		A	472	G	227	T	227	C	472
17-03-17 23:18:17.318 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37425, sync = True, waitForSettling = True)
17-03-17 23:18:17.318 -07 000000610 INF: Z Motor: Moving to -0.171321 mm, started at -0.178128 mm, distance = 6.81 um
17-03-17 23:18:17.318 -07 000000610 INF: FPGA: Xmit ZDACW 37425\n [Z Motor]
17-03-17 23:18:17.318 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 23:18:17.328 -07 000000610 INF: FPGA: 'ZDACW 37425' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:18:17.328 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:18:17.328 -07 000000415 INF: FPGA: Recv ZDACR 37425
17-03-17 23:18:17.338 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:17.338 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:18:17.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:17.488 -07 000000561 INF: FPGA: Recv ZSGSRD 35954
17-03-17 23:18:17.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:18:17.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:17.498 -07 000000576 INF: FPGA: Recv ZSGSRD 35960
17-03-17 23:18:17.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:17.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:17.508 -07 000000618 INF: FPGA: Recv ZSGSRD 35955
17-03-17 23:18:17.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:17.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:17.518 -07 000000576 INF: FPGA: Recv ZSGSRD 35959
17-03-17 23:18:17.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:17.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:17.528 -07 000000448 INF: FPGA: Recv ZSGSRD 35957
17-03-17 23:18:17.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:17.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:17.538 -07 000000541 INF: FPGA: Recv ZSGSRD 35961
17-03-17 23:18:17.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:17.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:17.548 -07 000000501 INF: FPGA: Recv ZSGSRD 35962
17-03-17 23:18:17.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:17.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:17.558 -07 000000478 INF: FPGA: Recv ZSGSRD 35957
17-03-17 23:18:17.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:17.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:17.568 -07 000000502 INF: FPGA: Recv ZSGSRD 35958
17-03-17 23:18:17.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:17.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:17.578 -07 000000382 INF: FPGA: Recv ZSGSRD 35959
17-03-17 23:18:17.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:17.588 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:18:17.588 -07 000000541 INF: FPGA: Recv ZPIEZORD 31888
17-03-17 23:18:17.598 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:18:17.598 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.711 V. Piezo Error = -9.0 V.
17-03-17 23:18:17.598 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.3 um, Read 10 ADC samples: Avg = 35958 (-170.4 uncal um), Error = 0.9 uncal um, Median = 35958 (-170.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35954 (-170.4 uncal um), Max = 35962 (-170.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:18:17.598 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35958, posNoise = 4, negNoise = 4
17-03-17 23:18:17.598 -07 000000610 INF: Z Motor: After move to -0.171321, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:18:17.598 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 23:18:17.598 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:18:17.598 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:18:17.598 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:18:17.598 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:18:17.598 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:18:17.598 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:18:17.598 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:18:17.598 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:18:17.598 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 23:18:17.598 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:18:17.598 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:18:17.598 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:18:17.598 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:18:17.598 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:18:17.608 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:18:17.608 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:18:17.618 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 18 ms.
17-03-17 23:18:17.618 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 23:18:17.618 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 18 ms.
17-03-17 23:18:17.618 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 24 ms.
17-03-17 23:18:17.628 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 472 472 227 227 37602 150\n [Camera]
17-03-17 23:18:17.798 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 74, FrontChillerTemperature: 4.008536,
17-03-17 23:18:17.828 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:18:18.298 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 664
17-03-17 23:18:18.298 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 664
17-03-17 23:18:18.298 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:18:18.298 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:18:18.298 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2468351704, 0x0, 391868352) start.
17-03-17 23:18:18.298 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 664
17-03-17 23:18:18.298 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 664
17-03-17 23:18:18.298 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:18:18.298 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:18:18.298 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2503773968, 0x0, 418435064) start.
17-03-17 23:18:18.488 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37602 857
17-03-17 23:18:18.638 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1007
17-03-17 23:18:18.688 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2503773968, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 23:18:18.688 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 23:18:18.688 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:18:18.688 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2468351704, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 23:18:18.688 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 23:18:18.688 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:18:18.698 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:18:18.698 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:18:18.698 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 23:18:18.698 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 23:18:18.868 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1234
17-03-17 23:18:18.868 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1234
17-03-17 23:18:18.868 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:18:18.868 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1234
17-03-17 23:18:18.868 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1234
17-03-17 23:18:18.868 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:18:18.868 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:18:18.868 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-17 23:18:18.868 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:18:18.868 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-17 23:18:19.058 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1427
17-03-17 23:18:19.058 -07 000000415 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:18:19.058 -07 000000610 INF: FPGA: 'CAMDBLSNAP 472 472 227 227 37602 150' command took 4 ms to send, 1424 ms to get response, and 1433 ms overall
17-03-17 23:18:19.058 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:18:19.058 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.5634765625, Z-Position -0.171325172204575. ------
17-03-17 23:18:19.068 -07 000000593 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17761 mm
17-03-17 23:18:19.068 -07 000000593 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:18:19.068 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:18:19.068 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 38800, sync = True, waitForSettling = False)
17-03-17 23:18:19.068 -07 000000462 INF: Z Motor: Moving to -0.177615 mm, started at -0.171325 mm, distance = -6.29 um
17-03-17 23:18:19.068 -07 000000482 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 23:18:19.068 -07 000000482 INF: Y Motor: Moving to 62.4026 mm, started at 61.5635 mm, delta = 0.8391 mm
17-03-17 23:18:19.068 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:18:19.078 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:18:19.078 -07 000000462 INF: FPGA: Xmit ZDACW 38800\n [Z Motor]
17-03-17 23:18:19.078 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 23:18:19.088 -07 000000462 INF: FPGA: 'ZDACW 38800' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 23:18:19.088 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:18:19.088 -07 000000448 INF: FPGA: Recv YRDPOS 126082
17-03-17 23:18:19.098 -07 000000429 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:18:19.098 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 23:18:19.098 -07 000000482 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:18:19.098 -07 000000482 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:18:19.098 -07 000000482 INF: Y Motor: Moving 1343 steps-20
17-03-17 23:18:19.108 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:18:19.108 -07 000000478 INF: FPGA: Recv ZDACR 38800
17-03-17 23:18:19.118 -07 000000482 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:18:19.118 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:18:19.118 -07 000000462 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-17 23:18:19.278 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 23:18:19.278 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 23:18:19.278 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:18:19.278 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 403 ms.
17-03-17 23:18:19.278 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 23:18:19.278 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:18:19.278 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:18:19.278 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 23:18:19.278 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:18:19.288 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 23:18:19.298 -07 000000448 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:18:19.298 -07 000000429 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 23:18:19.488 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 23:18:19.488 -07 000000482 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 23:18:19.528 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:18:19.538 -07 000000486 INF: FPGA: Recv YRDPOS 127784
17-03-17 23:18:19.548 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:18:19.548 -07 000000482 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:18:19.548 -07 000000482 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 23:18:19.548 -07 000000482 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.114 mm/sec
17-03-17 23:18:20.498 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:18:20.498 -07 000000415 INF: FPGA: Recv YRDPOS 127785
17-03-17 23:18:20.508 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:20.508 -07 000000482 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:18:20.528 -07 000000482 INF: Y Motor: After move to 62.402607, error = -0.007587, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:18:20.528 -07 000000482 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 23:18:20.528 -07 000000482 INF: Y Motor: Moved to 62.3950 after 1459 ms (table move)
17-03-17 23:18:20.528 -07 000000593 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177615 mm (DAC = 38800)
17-03-17 23:18:20.528 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:20.538 -07 000000429 INF: FPGA: Recv ZSGSRD 36948
17-03-17 23:18:20.538 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 23:18:20.538 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:20.538 -07 000000547 INF: FPGA: Recv ZSGSRD 36943
17-03-17 23:18:20.548 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:18:20.548 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:20.548 -07 000000409 INF: FPGA: Recv ZSGSRD 36943
17-03-17 23:18:20.558 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:20.558 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:20.558 -07 000000502 INF: FPGA: Recv ZSGSRD 36939
17-03-17 23:18:20.568 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:20.568 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:20.568 -07 000000486 INF: FPGA: Recv ZSGSRD 36939
17-03-17 23:18:20.578 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:20.578 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:20.578 -07 000000429 INF: FPGA: Recv ZSGSRD 36938
17-03-17 23:18:20.588 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:20.588 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:20.588 -07 000000448 INF: FPGA: Recv ZSGSRD 36937
17-03-17 23:18:20.598 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:20.598 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:20.598 -07 000000618 INF: FPGA: Recv ZSGSRD 36928
17-03-17 23:18:20.608 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:20.608 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:20.608 -07 000000382 INF: FPGA: Recv ZSGSRD 36940
17-03-17 23:18:20.618 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:20.618 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:20.618 -07 000000462 INF: FPGA: Recv ZSGSRD 36941
17-03-17 23:18:20.628 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:20.628 -07 000000593 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:18:20.628 -07 000000429 INF: FPGA: Recv ZPIEZORD 33213
17-03-17 23:18:20.638 -07 000000593 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:20.638 -07 000000593 INF: Z Motor: Piezo is near 51.0 V (nominally 0 to 100 V), expect near 59.2 V, since DAC is at 5.921 V. Piezo Error = -8.3 V.
17-03-17 23:18:20.638 -07 000000593 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.6 um, Read 10 ADC samples: Avg = 36940 (-176.7 uncal um), Error = 0.9 uncal um, Median = 36940 (-176.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 36928 (-176.7 uncal um), Max = 36948 (-176.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 12 (0.1 uncal um)
17-03-17 23:18:20.638 -07 000000593 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36940, posNoise = 8, negNoise = 12
17-03-17 23:18:20.638 -07 000000593 INF: Z Motor: After move to -0.177615, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:18:20.638 -07 000000593 INF: Z Motor: Settle wait time = 1463 ms, measure time = 103 ms (allowed 150 ms), total time = 1566 ms
17-03-17 23:18:20.638 -07 000000593 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 23:18:20.688 -07 000000593 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1617 ms
17-03-17 23:18:20.688 -07 000000593 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:18:20.688 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:18:20.688 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:18:20.688 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:18:20.688 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:18:20.688 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:18:20.688 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:18:20.688 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:18:20.688 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:18:20.698 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:18:20.698 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:18:20.698 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 23:18:20.698 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 23:18:20.708 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:18:20.748 -07 000000551 INF: FPGA: Recv @CAMSNAP turning led on 43
17-03-17 23:18:20.948 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 243
17-03-17 23:18:20.948 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 243
17-03-17 23:18:20.948 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:18:20.958 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2621650816, 0x0, 559484976) start.
17-03-17 23:18:20.988 -07 000000478 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:18:20.988 -07 000000486 INF: FPGA: Recv CAMSNAP
17-03-17 23:18:20.988 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 23:18:21.068 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2621650816, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 23:18:21.068 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:18:21.068 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:18:21.068 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 23:18:21.088 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:18:21.088 -07 000000561 INF: Autofocus start
17-03-17 23:18:21.088 -07 000000561 INF: MeasureProfile start
17-03-17 23:18:21.088 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:18:21.098 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:18:21.098 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:18:21.098 -07 000000561 INF: MeasureProfile done
17-03-17 23:18:21.098 -07 000000561 INF: X=32  Z correction [um]=0.09220707
17-03-17 23:18:21.098 -07 000000561 INF: Autofocus finished
17-03-17 23:18:21.298 -07 000000627 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:18:21.298 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:18:21.298 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39501953125, Z-position -0.177633748527785. ----------
17-03-17 23:18:21.298 -07 000000610 INF: Cycle	74	Tile	4	Exposure Settings		A	472	G	227	T	227	C	472
17-03-17 23:18:21.308 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37332, sync = True, waitForSettling = True)
17-03-17 23:18:21.308 -07 000000610 INF: Z Motor: Moving to -0.170895 mm, started at -0.177634 mm, distance = 6.74 um
17-03-17 23:18:21.308 -07 000000610 INF: FPGA: Xmit ZDACW 37332\n [Z Motor]
17-03-17 23:18:21.308 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 23:18:21.318 -07 000000610 INF: FPGA: 'ZDACW 37332' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:21.318 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:18:21.318 -07 000000593 INF: FPGA: Recv ZDACR 37332
17-03-17 23:18:21.328 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:21.328 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:18:21.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:21.478 -07 000000478 INF: FPGA: Recv ZSGSRD 35893
17-03-17 23:18:21.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:18:21.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:21.488 -07 000000502 INF: FPGA: Recv ZSGSRD 35898
17-03-17 23:18:21.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:21.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:21.498 -07 000000627 INF: FPGA: Recv ZSGSRD 35896
17-03-17 23:18:21.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:21.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:21.508 -07 000000541 INF: FPGA: Recv ZSGSRD 35890
17-03-17 23:18:21.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:18:21.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:21.518 -07 000000448 INF: FPGA: Recv ZSGSRD 35897
17-03-17 23:18:21.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:21.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:21.528 -07 000000482 INF: FPGA: Recv ZSGSRD 35895
17-03-17 23:18:21.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:21.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:21.538 -07 000000547 INF: FPGA: Recv ZSGSRD 35891
17-03-17 23:18:21.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:21.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:21.548 -07 000000429 INF: FPGA: Recv ZSGSRD 35887
17-03-17 23:18:21.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:21.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:21.558 -07 000000486 INF: FPGA: Recv ZSGSRD 35895
17-03-17 23:18:21.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:21.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:21.568 -07 000000382 INF: FPGA: Recv ZSGSRD 35895
17-03-17 23:18:21.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:21.578 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:18:21.578 -07 000000409 INF: FPGA: Recv ZPIEZORD 31810
17-03-17 23:18:21.588 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:21.588 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.696 V. Piezo Error = -9.0 V.
17-03-17 23:18:21.588 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.9 um, Read 10 ADC samples: Avg = 35894 (-170.0 uncal um), Error = 0.9 uncal um, Median = 35895 (-170.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35887 (-170.0 uncal um), Max = 35898 (-170.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 23:18:21.588 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35894, posNoise = 4, negNoise = 7
17-03-17 23:18:21.588 -07 000000610 INF: Z Motor: After move to -0.170895, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:18:21.588 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 23:18:21.588 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:18:21.588 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:18:21.588 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:18:21.588 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:18:21.588 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:18:21.588 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:18:21.588 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:18:21.588 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:18:21.588 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:18:21.588 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:18:21.588 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 23:18:21.588 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:18:21.588 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:18:21.588 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:18:21.598 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:18:21.598 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:18:21.608 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 23:18:21.608 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 23:18:21.608 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 23:18:21.608 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:18:21.618 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 472 472 227 227 37509 150\n [Camera]
17-03-17 23:18:21.808 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:18:22.058 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:18:22.058 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 73. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1178, R2=1229, Total=2407. Warn if over 250 bubbles per interval.
17-03-17 23:18:22.288 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 664
17-03-17 23:18:22.288 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 664
17-03-17 23:18:22.288 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:18:22.288 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:18:22.288 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 23:18:22.288 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 664
17-03-17 23:18:22.288 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 664
17-03-17 23:18:22.288 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:18:22.408 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:18:22.408 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 23:18:22.478 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37509 857
17-03-17 23:18:22.628 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1007
17-03-17 23:18:22.678 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 23:18:22.678 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 23:18:22.678 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:18:22.678 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:18:22.678 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 23:18:22.788 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 23:18:22.788 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 23:18:22.788 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:18:22.788 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 23:18:22.798 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 509 ms.
17-03-17 23:18:22.858 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1234
17-03-17 23:18:22.858 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1234
17-03-17 23:18:22.858 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:18:22.858 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1234
17-03-17 23:18:22.858 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1234
17-03-17 23:18:22.858 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:18:22.868 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:18:22.868 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 23:18:22.868 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:18:22.868 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-17 23:18:23.048 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP 1427
17-03-17 23:18:23.048 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:18:23.048 -07 000000610 INF: FPGA: 'CAMDBLSNAP 472 472 227 227 37509 150' command took 2 ms to send, 1423 ms to get response, and 1434 ms overall
17-03-17 23:18:23.048 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:18:23.048 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39501953125, Z-Position -0.170914022627503. ------
17-03-17 23:18:23.058 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:18:23.058 -07 000000547 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17744 mm
17-03-17 23:18:23.058 -07 000000547 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:18:23.058 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:18:23.058 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 23:18:23.058 -07 000000623 INF: Y Motor: Moving to 63.2326 mm, started at 62.3950 mm, delta = 0.8376 mm
17-03-17 23:18:23.058 -07 000000478 INF: Z Motor: Entering MoveAbsStepped (DAC = 38762, sync = True, waitForSettling = False)
17-03-17 23:18:23.058 -07 000000478 INF: Z Motor: Moving to -0.177441 mm, started at -0.170914 mm, distance = -6.53 um
17-03-17 23:18:23.068 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:23.068 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:18:23.068 -07 000000576 INF: FPGA: Recv YRDPOS 127785
17-03-17 23:18:23.078 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 23:18:23.078 -07 000000623 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:18:23.078 -07 000000623 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:18:23.078 -07 000000623 INF: Y Motor: Moving 1340 steps-17
17-03-17 23:18:23.078 -07 000000478 INF: FPGA: Xmit ZDACW 38762\n [Z Motor]
17-03-17 23:18:23.078 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 23:18:23.088 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:18:23.088 -07 000000478 INF: FPGA: 'ZDACW 38762' command took 1 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 23:18:23.098 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:18:23.108 -07 000000478 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:18:23.108 -07 000000415 INF: FPGA: Recv ZDACR 38762
17-03-17 23:18:23.118 -07 000000478 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:18:23.118 -07 000000478 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-17 23:18:23.158 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 74, FrontChillerTemperature: 4.016692,
17-03-17 23:18:23.258 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 23:18:23.258 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 23:18:23.258 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:18:23.268 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 23:18:23.268 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 23:18:23.268 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:18:23.268 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:18:23.268 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 23:18:23.268 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:18:23.278 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 23:18:23.288 -07 000000486 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:18:23.288 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 23:18:23.478 -07 000000593 INF: FPGA: Recv YMVTILE
17-03-17 23:18:23.478 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 399 ms overall
17-03-17 23:18:23.518 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:18:23.518 -07 000000561 INF: FPGA: Recv YRDPOS 129481
17-03-17 23:18:23.528 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:23.528 -07 000000623 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:18:23.528 -07 000000623 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 23:18:23.528 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.838 mm, average velocity = 2.099 mm/sec
17-03-17 23:18:24.478 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:18:24.478 -07 000000415 INF: FPGA: Recv YRDPOS 129482
17-03-17 23:18:24.488 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:18:24.488 -07 000000623 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:18:24.508 -07 000000623 INF: Y Motor: After move to 63.232609, error = -0.008976, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:18:24.508 -07 000000623 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 23:18:24.508 -07 000000623 INF: Y Motor: Moved to 63.2236 after 1451 ms (table move)
17-03-17 23:18:24.508 -07 000000547 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177441 mm (DAC = 38762)
17-03-17 23:18:24.508 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:24.518 -07 000000551 INF: FPGA: Recv ZSGSRD 36915
17-03-17 23:18:24.518 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 23:18:24.518 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:24.518 -07 000000618 INF: FPGA: Recv ZSGSRD 36914
17-03-17 23:18:24.528 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:18:24.528 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:24.528 -07 000000501 INF: FPGA: Recv ZSGSRD 36904
17-03-17 23:18:24.538 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:24.538 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:24.538 -07 000000623 INF: FPGA: Recv ZSGSRD 36911
17-03-17 23:18:24.548 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:24.548 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:24.548 -07 000000486 INF: FPGA: Recv ZSGSRD 36917
17-03-17 23:18:24.558 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:24.558 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:24.558 -07 000000448 INF: FPGA: Recv ZSGSRD 36920
17-03-17 23:18:24.568 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:24.568 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:24.568 -07 000000415 INF: FPGA: Recv ZSGSRD 36911
17-03-17 23:18:24.578 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:24.578 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:24.578 -07 000000623 INF: FPGA: Recv ZSGSRD 36910
17-03-17 23:18:24.588 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:24.588 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:24.588 -07 000000551 INF: FPGA: Recv ZSGSRD 36909
17-03-17 23:18:24.598 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:24.598 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:24.598 -07 000000462 INF: FPGA: Recv ZSGSRD 36910
17-03-17 23:18:24.608 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:24.608 -07 000000547 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:18:24.608 -07 000000561 INF: FPGA: Recv ZPIEZORD 33194
17-03-17 23:18:24.618 -07 000000547 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:24.618 -07 000000547 INF: Z Motor: Piezo is near 50.9 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.915 V. Piezo Error = -8.2 V.
17-03-17 23:18:24.618 -07 000000547 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.4 um, Read 10 ADC samples: Avg = 36912 (-176.6 uncal um), Error = 0.9 uncal um, Median = 36911 (-176.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36904 (-176.5 uncal um), Max = 36920 (-176.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 23:18:24.618 -07 000000547 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36912, posNoise = 8, negNoise = 8
17-03-17 23:18:24.618 -07 000000547 INF: Z Motor: After move to -0.177441, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:18:24.618 -07 000000547 INF: Z Motor: Settle wait time = 1453 ms, measure time = 102 ms (allowed 150 ms), total time = 1555 ms
17-03-17 23:18:24.618 -07 000000547 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 23:18:24.668 -07 000000547 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1609 ms
17-03-17 23:18:24.668 -07 000000547 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:18:24.668 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:18:24.668 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:18:24.668 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:18:24.668 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:18:24.668 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:18:24.668 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:18:24.668 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:18:24.668 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:18:24.678 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 23:18:24.678 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:18:24.678 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 23:18:24.678 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 23:18:24.688 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:18:24.728 -07 000000486 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:18:24.928 -07 000000478 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:18:24.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:18:24.928 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:18:25.038 -07 000000618 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:18:25.038 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-17 23:18:25.038 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2621116632, 0x0, 559484976) start.
17-03-17 23:18:25.038 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 348 ms to get response, and 354 ms overall
17-03-17 23:18:25.158 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2621116632, 0x0, 559484976) end. Duration was 113 ms.
17-03-17 23:18:25.158 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:18:25.158 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:18:25.158 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 224 ms.
17-03-17 23:18:25.238 -07 000000623 INF: Autofocus start
17-03-17 23:18:25.238 -07 000000623 INF: MeasureProfile start
17-03-17 23:18:25.238 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:18:25.238 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:18:25.248 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:18:25.248 -07 000000593 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:18:25.248 -07 000000623 INF: MeasureProfile done
17-03-17 23:18:25.248 -07 000000623 INF: X=0  Z correction [um]=-0.0713522
17-03-17 23:18:25.248 -07 000000623 INF: Autofocus finished
17-03-17 23:18:25.448 -07 000000486 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:18:25.448 -07 000000593 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:18:25.448 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.2236328125, Z-position -0.177453870587815. ----------
17-03-17 23:18:25.458 -07 000000610 INF: Cycle	74	Tile	5	Exposure Settings		A	472	G	227	T	227	C	472
17-03-17 23:18:25.458 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37259, sync = True, waitForSettling = True)
17-03-17 23:18:25.458 -07 000000610 INF: Z Motor: Moving to -0.170561 mm, started at -0.177454 mm, distance = 6.89 um
17-03-17 23:18:25.458 -07 000000610 INF: FPGA: Xmit ZDACW 37259\n [Z Motor]
17-03-17 23:18:25.458 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 23:18:25.468 -07 000000610 INF: FPGA: 'ZDACW 37259' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:18:25.468 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:18:25.468 -07 000000593 INF: FPGA: Recv ZDACR 37259
17-03-17 23:18:25.478 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:25.478 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:18:25.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:25.628 -07 000000448 INF: FPGA: Recv ZSGSRD 35844
17-03-17 23:18:25.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:18:25.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:25.638 -07 000000547 INF: FPGA: Recv ZSGSRD 35840
17-03-17 23:18:25.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:25.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:25.648 -07 000000623 INF: FPGA: Recv ZSGSRD 35843
17-03-17 23:18:25.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:25.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:25.658 -07 000000382 INF: FPGA: Recv ZSGSRD 35837
17-03-17 23:18:25.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:25.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:25.668 -07 000000618 INF: FPGA: Recv ZSGSRD 35845
17-03-17 23:18:25.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:25.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:25.678 -07 000000501 INF: FPGA: Recv ZSGSRD 35851
17-03-17 23:18:25.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:25.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:25.688 -07 000000478 INF: FPGA: Recv ZSGSRD 35835
17-03-17 23:18:25.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:25.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:25.698 -07 000000382 INF: FPGA: Recv ZSGSRD 35837
17-03-17 23:18:25.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:25.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:25.708 -07 000000482 INF: FPGA: Recv ZSGSRD 35836
17-03-17 23:18:25.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:25.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:25.718 -07 000000501 INF: FPGA: Recv ZSGSRD 35843
17-03-17 23:18:25.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:25.728 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:18:25.728 -07 000000576 INF: FPGA: Recv ZPIEZORD 31769
17-03-17 23:18:25.738 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:25.738 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.685 V. Piezo Error = -9.0 V.
17-03-17 23:18:25.738 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.6 um, Read 10 ADC samples: Avg = 35841 (-169.7 uncal um), Error = 0.9 uncal um, Median = 35842 (-169.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 35835 (-169.7 uncal um), Max = 35851 (-169.8 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:18:25.738 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35841, posNoise = 10, negNoise = 6
17-03-17 23:18:25.738 -07 000000610 INF: Z Motor: After move to -0.170561, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:18:25.738 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 23:18:25.738 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:18:25.738 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:18:25.738 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:18:25.738 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:18:25.738 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:18:25.738 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:18:25.738 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:18:25.738 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 23:18:25.738 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:18:25.738 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:18:25.738 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:18:25.748 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:18:25.748 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:18:25.748 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:18:25.748 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:18:25.748 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:18:25.758 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 23:18:25.758 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:18:25.758 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 23:18:25.758 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 23:18:25.768 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 472 472 227 227 37436 150\n [Camera]
17-03-17 23:18:25.968 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:18:26.438 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 664
17-03-17 23:18:26.438 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 664
17-03-17 23:18:26.438 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:18:26.448 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 664
17-03-17 23:18:26.448 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 664
17-03-17 23:18:26.448 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:18:26.448 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:18:26.448 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 23:18:26.448 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:18:26.448 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 23:18:26.638 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37436 857
17-03-17 23:18:26.788 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1007
17-03-17 23:18:26.838 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 23:18:26.838 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 23:18:26.838 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:18:26.848 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 23:18:26.848 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 23:18:26.848 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:18:26.848 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:18:26.848 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 23:18:26.848 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:18:26.858 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 23:18:27.008 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1234
17-03-17 23:18:27.008 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1234
17-03-17 23:18:27.008 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:18:27.018 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1234
17-03-17 23:18:27.018 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1234
17-03-17 23:18:27.018 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:18:27.018 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:18:27.018 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2468220576, 0x0, 418435064) start.
17-03-17 23:18:27.018 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:18:27.018 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-17 23:18:27.058 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:18:27.058 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 73. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1178, R2=1229, Total=2407. Warn if over 250 bubbles per interval.
17-03-17 23:18:27.198 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP 1427
17-03-17 23:18:27.208 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:18:27.208 -07 000000610 INF: FPGA: 'CAMDBLSNAP 472 472 227 227 37436 150' command took 2 ms to send, 1430 ms to get response, and 1437 ms overall
17-03-17 23:18:27.208 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:18:27.208 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.2236328125, Z-Position -0.170573539383989. ------
17-03-17 23:18:27.208 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:18:27.208 -07 000000547 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17699 mm
17-03-17 23:18:27.208 -07 000000547 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:18:27.208 -07 000000448 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 23:18:27.208 -07 000000448 INF: Y Motor: Moving to 64.0626 mm, started at 63.2236 mm, delta = 0.8390 mm
17-03-17 23:18:27.208 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 38664, sync = True, waitForSettling = False)
17-03-17 23:18:27.208 -07 000000462 INF: Z Motor: Moving to -0.176992 mm, started at -0.170574 mm, distance = -6.42 um
17-03-17 23:18:27.208 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:18:27.218 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:18:27.218 -07 000000462 INF: FPGA: Xmit ZDACW 38664\n [Z Motor]
17-03-17 23:18:27.218 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 23:18:27.228 -07 000000593 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:18:27.228 -07 000000462 INF: FPGA: 'ZDACW 38664' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:18:27.238 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:18:27.238 -07 000000482 INF: FPGA: Recv YRDPOS 129482
17-03-17 23:18:27.248 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 23:18:27.248 -07 000000448 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:18:27.248 -07 000000448 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:18:27.248 -07 000000448 INF: Y Motor: Moving 1342 steps-19
17-03-17 23:18:27.248 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:18:27.248 -07 000000623 INF: FPGA: Recv ZDACR 38664
17-03-17 23:18:27.258 -07 000000462 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:18:27.258 -07 000000462 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-17 23:18:27.258 -07 000000448 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:18:27.418 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 23:18:27.418 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 23:18:27.418 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:18:27.418 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2468220576, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 23:18:27.418 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 23:18:27.418 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:18:27.418 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:18:27.418 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 23:18:27.418 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:18:27.428 -07 000000482 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:18:27.428 -07 000000593 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 215 ms overall
17-03-17 23:18:27.428 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 23:18:27.628 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-17 23:18:27.628 -07 000000448 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 23:18:27.668 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:18:27.678 -07 000000409 INF: FPGA: Recv YRDPOS 131187
17-03-17 23:18:27.678 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 23:18:27.678 -07 000000448 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:18:27.678 -07 000000448 INF: Y Motor: Position error before settling (table move) = -13 encoder counts (-0.006 mm)
17-03-17 23:18:27.678 -07 000000448 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.839 mm, average velocity = 2.162 mm/sec
17-03-17 23:18:28.518 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 74, FrontChillerTemperature: 3.994908,
17-03-17 23:18:28.628 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:18:28.628 -07 000000482 INF: FPGA: Recv YRDPOS 131188
17-03-17 23:18:28.638 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:28.638 -07 000000448 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:18:28.658 -07 000000448 INF: Y Motor: After move to 64.062607, error = -0.005966, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:18:28.658 -07 000000448 INF: Y Motor: Position error after settling (table move) = -12 encoder counts (-0.006 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 23:18:28.658 -07 000000448 INF: Y Motor: Moved to 64.0566 after 1446 ms (table move)
17-03-17 23:18:28.658 -07 000000547 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176992 mm (DAC = 38664)
17-03-17 23:18:28.658 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:28.668 -07 000000501 INF: FPGA: Recv ZSGSRD 36851
17-03-17 23:18:28.668 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 23:18:28.668 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:28.668 -07 000000551 INF: FPGA: Recv ZSGSRD 36842
17-03-17 23:18:28.678 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:18:28.678 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:28.678 -07 000000618 INF: FPGA: Recv ZSGSRD 36842
17-03-17 23:18:28.688 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:28.688 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:28.688 -07 000000623 INF: FPGA: Recv ZSGSRD 36847
17-03-17 23:18:28.698 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:28.698 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:28.698 -07 000000501 INF: FPGA: Recv ZSGSRD 36842
17-03-17 23:18:28.708 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:28.708 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:28.708 -07 000000551 INF: FPGA: Recv ZSGSRD 36842
17-03-17 23:18:28.718 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:28.718 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:28.718 -07 000000482 INF: FPGA: Recv ZSGSRD 36841
17-03-17 23:18:28.728 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:28.728 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:28.728 -07 000000501 INF: FPGA: Recv ZSGSRD 36837
17-03-17 23:18:28.738 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:28.738 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:28.738 -07 000000501 INF: FPGA: Recv ZSGSRD 36836
17-03-17 23:18:28.748 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:28.748 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:28.748 -07 000000448 INF: FPGA: Recv ZSGSRD 36841
17-03-17 23:18:28.758 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:28.758 -07 000000547 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:18:28.758 -07 000000561 INF: FPGA: Recv ZPIEZORD 33094
17-03-17 23:18:28.768 -07 000000547 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:28.768 -07 000000547 INF: Z Motor: Piezo is near 50.7 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.900 V. Piezo Error = -8.3 V.
17-03-17 23:18:28.768 -07 000000547 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.0 um, Read 10 ADC samples: Avg = 36842 (-176.1 uncal um), Error = 0.9 uncal um, Median = 36842 (-176.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36836 (-176.1 uncal um), Max = 36851 (-176.2 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:18:28.768 -07 000000547 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36842, posNoise = 9, negNoise = 6
17-03-17 23:18:28.768 -07 000000547 INF: Z Motor: After move to -0.176992, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:18:28.768 -07 000000547 INF: Z Motor: Settle wait time = 1449 ms, measure time = 101 ms (allowed 150 ms), total time = 1550 ms
17-03-17 23:18:28.768 -07 000000547 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 23:18:28.818 -07 000000547 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-17 23:18:28.818 -07 000000547 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:18:28.818 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:18:28.818 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:18:28.818 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:18:28.818 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:18:28.818 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:18:28.818 -07 000000409 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:18:28.818 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:18:28.818 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:18:28.818 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:18:28.818 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:18:28.828 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 23:18:28.828 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 23:18:28.828 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:18:28.878 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:18:29.078 -07 000000551 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:18:29.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:18:29.078 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:18:29.078 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 661079536, 0x0, 559484976) start.
17-03-17 23:18:29.118 -07 000000415 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:18:29.118 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-17 23:18:29.118 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 274 ms to get response, and 284 ms overall
17-03-17 23:18:29.198 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 661079536, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 23:18:29.198 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:18:29.198 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 23:18:29.198 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 23:18:29.218 -07 000000478 INF: Autofocus start
17-03-17 23:18:29.218 -07 000000478 INF: MeasureProfile start
17-03-17 23:18:29.218 -07 000000409 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:18:29.218 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:18:29.228 -07 000000409 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:18:29.228 -07 000000409 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:18:29.238 -07 000000478 INF: MeasureProfile done
17-03-17 23:18:29.238 -07 000000478 INF: X=48  Z correction [um]=0.1739867
17-03-17 23:18:29.238 -07 000000478 INF: Autofocus finished
17-03-17 23:18:29.438 -07 000000482 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:18:29.438 -07 000000409 INF: FPGA: 'FOCMRRIMG' command took 11 ms to send, 194 ms to get response, and 214 ms overall
17-03-17 23:18:29.438 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.056640625, Z-position -0.177004175737892. ----------
17-03-17 23:18:29.448 -07 000000610 INF: Cycle	74	Tile	6	Exposure Settings		A	472	G	227	T	227	C	472
17-03-17 23:18:29.448 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37215, sync = True, waitForSettling = True)
17-03-17 23:18:29.448 -07 000000610 INF: Z Motor: Moving to -0.170359 mm, started at -0.177004 mm, distance = 6.64 um
17-03-17 23:18:29.448 -07 000000610 INF: FPGA: Xmit ZDACW 37215\n [Z Motor]
17-03-17 23:18:29.458 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 23:18:29.458 -07 000000610 INF: FPGA: 'ZDACW 37215' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 23:18:29.458 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:18:29.458 -07 000000618 INF: FPGA: Recv ZDACR 37215
17-03-17 23:18:29.468 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:29.468 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:18:29.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:29.618 -07 000000486 INF: FPGA: Recv ZSGSRD 35809
17-03-17 23:18:29.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:29.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:29.628 -07 000000409 INF: FPGA: Recv ZSGSRD 35808
17-03-17 23:18:29.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:29.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:29.638 -07 000000448 INF: FPGA: Recv ZSGSRD 35808
17-03-17 23:18:29.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:29.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:29.648 -07 000000429 INF: FPGA: Recv ZSGSRD 35804
17-03-17 23:18:29.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:29.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:29.658 -07 000000478 INF: FPGA: Recv ZSGSRD 35807
17-03-17 23:18:29.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:29.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:29.668 -07 000000486 INF: FPGA: Recv ZSGSRD 35811
17-03-17 23:18:29.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:29.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:29.678 -07 000000623 INF: FPGA: Recv ZSGSRD 35807
17-03-17 23:18:29.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:29.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:29.688 -07 000000551 INF: FPGA: Recv ZSGSRD 35810
17-03-17 23:18:29.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:29.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:29.698 -07 000000561 INF: FPGA: Recv ZSGSRD 35809
17-03-17 23:18:29.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:29.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:29.708 -07 000000462 INF: FPGA: Recv ZSGSRD 35810
17-03-17 23:18:29.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:29.718 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:18:29.718 -07 000000623 INF: FPGA: Recv ZPIEZORD 31693
17-03-17 23:18:29.728 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:29.728 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.679 V. Piezo Error = -9.1 V.
17-03-17 23:18:29.728 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.4 um, Read 10 ADC samples: Avg = 35808 (-169.5 uncal um), Error = 0.9 uncal um, Median = 35808 (-169.5 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35804 (-169.5 uncal um), Max = 35811 (-169.5 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:18:29.728 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35808, posNoise = 3, negNoise = 4
17-03-17 23:18:29.728 -07 000000610 INF: Z Motor: After move to -0.170359, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:18:29.728 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 23:18:29.728 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:18:29.728 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:18:29.728 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:18:29.728 -07 000000409 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:18:29.728 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:18:29.728 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:18:29.728 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:18:29.728 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:18:29.728 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 23:18:29.728 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:18:29.728 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 23:18:29.728 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:18:29.738 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:18:29.738 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:18:29.738 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:18:29.738 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:18:29.748 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 23:18:29.748 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 23:18:29.748 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 23:18:29.748 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 23:18:29.748 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 472 472 227 227 37392 150\n [Camera]
17-03-17 23:18:29.948 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:18:30.418 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 664
17-03-17 23:18:30.418 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 664
17-03-17 23:18:30.418 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:18:30.418 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:18:30.418 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2503642840, 0x0, 391868352) start.
17-03-17 23:18:30.428 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 664
17-03-17 23:18:30.428 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 664
17-03-17 23:18:30.428 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:18:30.428 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:18:30.428 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2631387408, 0x0, 418435064) start.
17-03-17 23:18:30.618 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37392 857
17-03-17 23:18:30.758 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1007
17-03-17 23:18:30.818 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2503642840, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 23:18:30.818 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 23:18:30.818 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:18:30.818 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2631387408, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 23:18:30.818 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 23:18:30.818 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:18:30.818 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:18:30.818 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 23:18:30.828 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:18:30.828 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 23:18:30.988 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1234
17-03-17 23:18:31.108 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1234
17-03-17 23:18:31.108 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1234
17-03-17 23:18:31.108 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1234
17-03-17 23:18:31.108 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:18:31.108 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:18:31.108 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:18:31.108 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2468220576, 0x0, 418435064) start.
17-03-17 23:18:31.118 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:18:31.118 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 23:18:31.178 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP 1426
17-03-17 23:18:31.178 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:18:31.178 -07 000000610 INF: FPGA: 'CAMDBLSNAP 472 472 227 227 37392 150' command took 2 ms to send, 1429 ms to get response, and 1434 ms overall
17-03-17 23:18:31.188 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:18:31.188 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.056640625, Z-Position -0.170361540383311. ------
17-03-17 23:18:31.188 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:18:31.188 -07 000000429 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17655 mm
17-03-17 23:18:31.188 -07 000000429 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:18:31.188 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 23:18:31.188 -07 000000576 INF: Y Motor: Moving to 64.8926 mm, started at 64.0566 mm, delta = 0.8360 mm
17-03-17 23:18:31.188 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:18:31.188 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 38567, sync = True, waitForSettling = False)
17-03-17 23:18:31.188 -07 000000551 INF: Z Motor: Moving to -0.176548 mm, started at -0.170362 mm, distance = -6.19 um
17-03-17 23:18:31.198 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:18:31.198 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:18:31.198 -07 000000623 INF: FPGA: Recv YRDPOS 131188
17-03-17 23:18:31.208 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 23:18:31.208 -07 000000576 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:18:31.208 -07 000000576 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:18:31.208 -07 000000576 INF: Y Motor: Moving 1338 steps-13
17-03-17 23:18:31.208 -07 000000593 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:18:31.218 -07 000000551 INF: FPGA: Xmit ZDACW 38567\n [Z Motor]
17-03-17 23:18:31.218 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 23:18:31.228 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:18:31.228 -07 000000551 INF: FPGA: 'ZDACW 38567' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 23:18:31.238 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:18:31.238 -07 000000482 INF: FPGA: Recv ZDACR 38567
17-03-17 23:18:31.248 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:18:31.248 -07 000000551 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-17 23:18:31.408 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:18:31.408 -07 000000593 INF: FPGA: 'FOCMRRFOC' command took 3 ms to send, 196 ms to get response, and 215 ms overall
17-03-17 23:18:31.488 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2468220576, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 23:18:31.488 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 23:18:31.488 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:18:31.498 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:18:31.498 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 23:18:31.498 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 23:18:31.498 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:18:31.498 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 23:18:31.508 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:18:31.508 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 23:18:31.598 -07 000000486 INF: FPGA: Recv YMVTILE
17-03-17 23:18:31.598 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 23:18:31.638 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:18:31.648 -07 000000623 INF: FPGA: Recv YRDPOS 132870
17-03-17 23:18:31.648 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 23:18:31.648 -07 000000576 INF: Y Motor: Encoder = 132870 = motor step 103804.7 = 64.8779 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:18:31.648 -07 000000576 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 23:18:31.648 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.836 mm, average velocity = 2.116 mm/sec
17-03-17 23:18:32.058 -07 000000409 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:18:32.058 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 73. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1178, R2=1229, Total=2407. Warn if over 250 bubbles per interval.
17-03-17 23:18:32.598 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:18:32.598 -07 000000482 INF: FPGA: Recv YRDPOS 132871
17-03-17 23:18:32.608 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:18:32.608 -07 000000576 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:18:32.628 -07 000000576 INF: Y Motor: After move to 64.892609, error = -0.014191, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:18:32.628 -07 000000576 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 23:18:32.628 -07 000000576 INF: Y Motor: Moved to 64.8784 after 1438 ms (table move)
17-03-17 23:18:32.628 -07 000000429 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176548 mm (DAC = 38567)
17-03-17 23:18:32.628 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:32.638 -07 000000618 INF: FPGA: Recv ZSGSRD 36774
17-03-17 23:18:32.638 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 3 ms to get response, and 4 ms overall
17-03-17 23:18:32.638 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:32.638 -07 000000576 INF: FPGA: Recv ZSGSRD 36783
17-03-17 23:18:32.648 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:18:32.648 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:32.648 -07 000000478 INF: FPGA: Recv ZSGSRD 36768
17-03-17 23:18:32.658 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:32.658 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:32.658 -07 000000551 INF: FPGA: Recv ZSGSRD 36773
17-03-17 23:18:32.668 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:32.668 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:32.668 -07 000000501 INF: FPGA: Recv ZSGSRD 36779
17-03-17 23:18:32.678 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:32.678 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:32.678 -07 000000576 INF: FPGA: Recv ZSGSRD 36779
17-03-17 23:18:32.688 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:32.688 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:32.688 -07 000000478 INF: FPGA: Recv ZSGSRD 36770
17-03-17 23:18:32.698 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:32.698 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:32.698 -07 000000551 INF: FPGA: Recv ZSGSRD 36764
17-03-17 23:18:32.708 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:32.708 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:32.708 -07 000000501 INF: FPGA: Recv ZSGSRD 36764
17-03-17 23:18:32.718 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:32.718 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:32.718 -07 000000576 INF: FPGA: Recv ZSGSRD 36774
17-03-17 23:18:32.728 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:32.728 -07 000000429 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:18:32.728 -07 000000448 INF: FPGA: Recv ZPIEZORD 33033
17-03-17 23:18:32.738 -07 000000429 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:32.738 -07 000000429 INF: Z Motor: Piezo is near 50.6 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.885 V. Piezo Error = -8.3 V.
17-03-17 23:18:32.738 -07 000000429 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.5 um, Read 10 ADC samples: Avg = 36773 (-175.7 uncal um), Error = 0.9 uncal um, Median = 36774 (-175.7 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 36764 (-175.6 uncal um), Max = 36783 (-175.7 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 23:18:32.738 -07 000000429 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36773, posNoise = 10, negNoise = 9
17-03-17 23:18:32.738 -07 000000429 INF: Z Motor: After move to -0.176548, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:18:32.738 -07 000000429 INF: Z Motor: Settle wait time = 1440 ms, measure time = 101 ms (allowed 150 ms), total time = 1541 ms
17-03-17 23:18:32.738 -07 000000429 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 23:18:32.788 -07 000000429 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1595 ms
17-03-17 23:18:32.788 -07 000000429 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:18:32.788 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:18:32.788 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:18:32.788 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:18:32.788 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:18:32.788 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:18:32.788 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:18:32.788 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 23:18:32.788 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:18:32.798 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:18:32.798 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:18:32.798 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 23:18:32.798 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 23:18:32.808 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:18:32.848 -07 000000478 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:18:33.048 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:18:33.048 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:18:33.048 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:18:33.048 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-17 23:18:33.088 -07 000000551 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:18:33.088 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-17 23:18:33.088 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 23:18:33.168 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 23:18:33.168 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:18:33.168 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:18:33.168 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 23:18:33.188 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:18:33.188 -07 000000551 INF: Autofocus start
17-03-17 23:18:33.188 -07 000000551 INF: MeasureProfile start
17-03-17 23:18:33.188 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:18:33.198 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:18:33.198 -07 000000623 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:18:33.198 -07 000000551 INF: MeasureProfile done
17-03-17 23:18:33.198 -07 000000551 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 23:18:33.198 -07 000000551 INF: Autofocus finished
17-03-17 23:18:33.398 -07 000000409 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:18:33.398 -07 000000623 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:18:33.398 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87841796875, Z-position -0.176560905100111. ----------
17-03-17 23:18:33.398 -07 000000610 INF: Cycle	74	Tile	7	Exposure Settings		A	472	G	227	T	227	C	472
17-03-17 23:18:33.408 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37047, sync = True, waitForSettling = True)
17-03-17 23:18:33.408 -07 000000610 INF: Z Motor: Moving to -0.169590 mm, started at -0.176561 mm, distance = 6.97 um
17-03-17 23:18:33.408 -07 000000610 INF: FPGA: Xmit ZDACW 37047\n [Z Motor]
17-03-17 23:18:33.408 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 23:18:33.418 -07 000000610 INF: FPGA: 'ZDACW 37047' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:18:33.418 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:18:33.418 -07 000000618 INF: FPGA: Recv ZDACR 37047
17-03-17 23:18:33.428 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:33.428 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:18:33.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:33.578 -07 000000478 INF: FPGA: Recv ZSGSRD 35689
17-03-17 23:18:33.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:18:33.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:33.588 -07 000000429 INF: FPGA: Recv ZSGSRD 35686
17-03-17 23:18:33.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:33.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:33.598 -07 000000462 INF: FPGA: Recv ZSGSRD 35692
17-03-17 23:18:33.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:33.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:33.608 -07 000000382 INF: FPGA: Recv ZSGSRD 35693
17-03-17 23:18:33.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:33.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:33.618 -07 000000478 INF: FPGA: Recv ZSGSRD 35691
17-03-17 23:18:33.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:33.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:33.628 -07 000000486 INF: FPGA: Recv ZSGSRD 35694
17-03-17 23:18:33.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:33.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:33.638 -07 000000462 INF: FPGA: Recv ZSGSRD 35691
17-03-17 23:18:33.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:33.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:33.648 -07 000000429 INF: FPGA: Recv ZSGSRD 35693
17-03-17 23:18:33.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:33.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:33.658 -07 000000382 INF: FPGA: Recv ZSGSRD 35686
17-03-17 23:18:33.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:33.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:33.668 -07 000000593 INF: FPGA: Recv ZSGSRD 35689
17-03-17 23:18:33.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:33.678 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:18:33.678 -07 000000448 INF: FPGA: Recv ZPIEZORD 31556
17-03-17 23:18:33.688 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:33.688 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.653 V. Piezo Error = -9.1 V.
17-03-17 23:18:33.688 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.6 um, Read 10 ADC samples: Avg = 35690 (-168.7 uncal um), Error = 0.9 uncal um, Median = 35691 (-168.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35686 (-168.7 uncal um), Max = 35694 (-168.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:18:33.688 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35690, posNoise = 4, negNoise = 4
17-03-17 23:18:33.688 -07 000000610 INF: Z Motor: After move to -0.169590, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:18:33.688 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 23:18:33.688 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:18:33.688 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:18:33.688 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:18:33.688 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:18:33.688 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:18:33.688 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:18:33.688 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:18:33.688 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:18:33.688 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:18:33.688 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:18:33.688 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:18:33.688 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:18:33.698 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:18:33.698 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:18:33.698 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 23:18:33.698 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:18:33.708 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 17 ms.
17-03-17 23:18:33.718 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 23:18:33.718 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 18 ms.
17-03-17 23:18:33.718 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 23:18:33.718 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 472 472 227 227 37223 150\n [Camera]
17-03-17 23:18:33.878 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 74, FrontChillerTemperature: 3.989471,
17-03-17 23:18:33.918 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:18:34.388 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 664
17-03-17 23:18:34.388 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 664
17-03-17 23:18:34.388 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:18:34.388 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:18:34.388 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2503642840, 0x0, 391868352) start.
17-03-17 23:18:34.388 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 664
17-03-17 23:18:34.388 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 664
17-03-17 23:18:34.508 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:18:34.508 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:18:34.508 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 23:18:34.578 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37223 857
17-03-17 23:18:34.728 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1007
17-03-17 23:18:34.778 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2503642840, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 23:18:34.778 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 23:18:34.778 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:18:34.778 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:18:34.778 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 23:18:34.888 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 23:18:34.888 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 23:18:34.888 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:18:34.888 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 23:18:34.898 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 23:18:34.958 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1234
17-03-17 23:18:34.958 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1234
17-03-17 23:18:34.958 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:18:34.958 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1234
17-03-17 23:18:34.958 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1234
17-03-17 23:18:34.958 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:18:34.958 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:18:34.958 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 23:18:34.968 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:18:34.968 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2468220576, 0x0, 391868352) start.
17-03-17 23:18:35.148 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP 1427
17-03-17 23:18:35.148 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:18:35.148 -07 000000610 INF: FPGA: 'CAMDBLSNAP 472 472 227 227 37223 150' command took 2 ms to send, 1427 ms to get response, and 1434 ms overall
17-03-17 23:18:35.148 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:18:35.148 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87841796875, Z-Position -0.169603483350584. ------
17-03-17 23:18:35.158 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:18:35.158 -07 000000482 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17615 mm
17-03-17 23:18:35.158 -07 000000482 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:18:35.158 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:18:35.158 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 23:18:35.158 -07 000000576 INF: Y Motor: Moving to 65.7226 mm, started at 64.8784 mm, delta = 0.8442 mm
17-03-17 23:18:35.158 -07 000000478 INF: Z Motor: Entering MoveAbsStepped (DAC = 38481, sync = True, waitForSettling = False)
17-03-17 23:18:35.158 -07 000000478 INF: Z Motor: Moving to -0.176155 mm, started at -0.169603 mm, distance = -6.55 um
17-03-17 23:18:35.168 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:18:35.168 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:18:35.168 -07 000000462 INF: FPGA: Recv YRDPOS 132871
17-03-17 23:18:35.178 -07 000000478 INF: FPGA: Xmit ZDACW 38481\n [Z Motor]
17-03-17 23:18:35.178 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 23:18:35.178 -07 000000576 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:18:35.178 -07 000000576 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:18:35.178 -07 000000576 INF: Y Motor: Moving 1351 steps-30
17-03-17 23:18:35.178 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 23:18:35.188 -07 000000478 INF: FPGA: 'ZDACW 38481' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 23:18:35.188 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:18:35.198 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:18:35.208 -07 000000478 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:18:35.208 -07 000000409 INF: FPGA: Recv ZDACR 38481
17-03-17 23:18:35.218 -07 000000478 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:18:35.218 -07 000000478 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 23:18:35.358 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 23:18:35.358 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 23:18:35.358 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:18:35.368 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2468220576, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 23:18:35.368 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 23:18:35.368 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:18:35.368 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:18:35.368 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:18:35.368 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 23:18:35.378 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 23:18:35.388 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:18:35.388 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 23:18:35.568 -07 000000486 INF: FPGA: Recv YMVTILE
17-03-17 23:18:35.568 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 23:18:35.608 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:18:35.618 -07 000000561 INF: FPGA: Recv YRDPOS 134581
17-03-17 23:18:35.618 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 23:18:35.618 -07 000000576 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:18:35.618 -07 000000576 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 23:18:35.618 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.126 mm/sec
17-03-17 23:18:36.568 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:18:36.568 -07 000000478 INF: FPGA: Recv YRDPOS 134581
17-03-17 23:18:36.578 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:36.578 -07 000000576 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:18:36.608 -07 000000576 INF: Y Motor: After move to 65.722610, error = -0.009232, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:18:36.608 -07 000000576 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:18:36.608 -07 000000576 INF: Y Motor: Moved to 65.7134 after 1442 ms (table move)
17-03-17 23:18:36.608 -07 000000482 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176155 mm (DAC = 38481)
17-03-17 23:18:36.608 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:36.608 -07 000000618 INF: FPGA: Recv ZSGSRD 36712
17-03-17 23:18:36.618 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:18:36.618 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:36.618 -07 000000551 INF: FPGA: Recv ZSGSRD 36710
17-03-17 23:18:36.628 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:36.628 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:36.628 -07 000000462 INF: FPGA: Recv ZSGSRD 36721
17-03-17 23:18:36.638 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:36.638 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:36.638 -07 000000409 INF: FPGA: Recv ZSGSRD 36717
17-03-17 23:18:36.648 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:36.648 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:36.648 -07 000000618 INF: FPGA: Recv ZSGSRD 36705
17-03-17 23:18:36.658 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:36.658 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:36.658 -07 000000623 INF: FPGA: Recv ZSGSRD 36712
17-03-17 23:18:36.668 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:36.668 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:36.668 -07 000000462 INF: FPGA: Recv ZSGSRD 36711
17-03-17 23:18:36.678 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:36.678 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:36.678 -07 000000501 INF: FPGA: Recv ZSGSRD 36705
17-03-17 23:18:36.688 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:18:36.688 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:36.688 -07 000000448 INF: FPGA: Recv ZSGSRD 36705
17-03-17 23:18:36.698 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:36.698 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:36.698 -07 000000486 INF: FPGA: Recv ZSGSRD 36710
17-03-17 23:18:36.708 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:36.708 -07 000000482 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:18:36.708 -07 000000618 INF: FPGA: Recv ZPIEZORD 32922
17-03-17 23:18:36.718 -07 000000482 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:36.718 -07 000000482 INF: Z Motor: Piezo is near 50.3 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.872 V. Piezo Error = -8.4 V.
17-03-17 23:18:36.718 -07 000000482 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.2 um, Read 10 ADC samples: Avg = 36711 (-175.3 uncal um), Error = 0.9 uncal um, Median = 36710 (-175.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36705 (-175.2 uncal um), Max = 36721 (-175.3 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:18:36.718 -07 000000482 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36711, posNoise = 10, negNoise = 6
17-03-17 23:18:36.718 -07 000000482 INF: Z Motor: After move to -0.176155, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:18:36.718 -07 000000482 INF: Z Motor: Settle wait time = 1444 ms, measure time = 107 ms (allowed 150 ms), total time = 1551 ms
17-03-17 23:18:36.718 -07 000000482 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 23:18:36.768 -07 000000482 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1606 ms
17-03-17 23:18:36.768 -07 000000482 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:18:36.768 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:18:36.768 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:18:36.768 -07 000000409 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:18:36.768 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:18:36.768 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:18:36.768 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:18:36.778 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:18:36.778 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:18:36.778 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:18:36.778 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:18:36.788 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 23:18:36.788 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 23:18:36.788 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:18:36.828 -07 000000486 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:18:37.028 -07 000000486 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:18:37.028 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:18:37.028 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:18:37.038 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-17 23:18:37.058 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:18:37.068 -07 000000382 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:18:37.068 -07 000000541 INF: FPGA: Recv CAMSNAP
17-03-17 23:18:37.068 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 23:18:37.148 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 23:18:37.148 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:18:37.148 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:18:37.148 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 23:18:37.158 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 73. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1178, R2=1229, Total=2407. Warn if over 250 bubbles per interval.
17-03-17 23:18:37.168 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:18:37.168 -07 000000486 INF: Autofocus start
17-03-17 23:18:37.168 -07 000000486 INF: MeasureProfile start
17-03-17 23:18:37.168 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:18:37.178 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:18:37.178 -07 000000623 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:18:37.178 -07 000000486 INF: MeasureProfile done
17-03-17 23:18:37.178 -07 000000486 INF: X=0  Z correction [um]=-0.0713522
17-03-17 23:18:37.188 -07 000000486 INF: Autofocus finished
17-03-17 23:18:37.378 -07 000000593 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:18:37.378 -07 000000623 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-17 23:18:37.388 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71337890625, Z-position -0.176162603947321. ----------
17-03-17 23:18:37.388 -07 000000610 INF: Cycle	74	Tile	8	Exposure Settings		A	472	G	227	T	227	C	472
17-03-17 23:18:37.388 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36978, sync = True, waitForSettling = True)
17-03-17 23:18:37.388 -07 000000610 INF: Z Motor: Moving to -0.169274 mm, started at -0.176163 mm, distance = 6.89 um
17-03-17 23:18:37.388 -07 000000610 INF: FPGA: Xmit ZDACW 36978\n [Z Motor]
17-03-17 23:18:37.388 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 23:18:37.398 -07 000000610 INF: FPGA: 'ZDACW 36978' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:18:37.398 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:18:37.398 -07 000000429 INF: FPGA: Recv ZDACR 36978
17-03-17 23:18:37.408 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:37.408 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:18:37.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:37.558 -07 000000541 INF: FPGA: Recv ZSGSRD 35643
17-03-17 23:18:37.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:18:37.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:37.568 -07 000000561 INF: FPGA: Recv ZSGSRD 35645
17-03-17 23:18:37.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:37.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:37.578 -07 000000593 INF: FPGA: Recv ZSGSRD 35640
17-03-17 23:18:37.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:37.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:37.588 -07 000000618 INF: FPGA: Recv ZSGSRD 35640
17-03-17 23:18:37.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:37.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:37.598 -07 000000541 INF: FPGA: Recv ZSGSRD 35643
17-03-17 23:18:37.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:37.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:37.608 -07 000000561 INF: FPGA: Recv ZSGSRD 35641
17-03-17 23:18:37.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:37.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:37.618 -07 000000593 INF: FPGA: Recv ZSGSRD 35635
17-03-17 23:18:37.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:37.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:37.628 -07 000000627 INF: FPGA: Recv ZSGSRD 35642
17-03-17 23:18:37.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:37.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:37.638 -07 000000541 INF: FPGA: Recv ZSGSRD 35638
17-03-17 23:18:37.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:37.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:37.648 -07 000000561 INF: FPGA: Recv ZSGSRD 35643
17-03-17 23:18:37.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:37.658 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:18:37.658 -07 000000593 INF: FPGA: Recv ZPIEZORD 31525
17-03-17 23:18:37.668 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:37.668 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.642 V. Piezo Error = -9.1 V.
17-03-17 23:18:37.668 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.3 um, Read 10 ADC samples: Avg = 35641 (-168.4 uncal um), Error = 0.9 uncal um, Median = 35642 (-168.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35635 (-168.4 uncal um), Max = 35645 (-168.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:18:37.668 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35641, posNoise = 4, negNoise = 6
17-03-17 23:18:37.668 -07 000000610 INF: Z Motor: After move to -0.169274, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:18:37.668 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 23:18:37.668 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:18:37.668 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:18:37.668 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:18:37.668 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:18:37.668 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:18:37.668 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:18:37.668 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:18:37.668 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:18:37.668 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 23:18:37.668 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:18:37.668 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:18:37.668 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:18:37.678 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:18:37.678 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:18:37.678 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:18:37.678 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:18:37.688 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 23:18:37.688 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 23:18:37.688 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 23:18:37.688 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:18:37.688 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 472 472 227 227 37154 150\n [Camera]
17-03-17 23:18:37.888 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:18:38.358 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 664
17-03-17 23:18:38.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 664
17-03-17 23:18:38.358 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:18:38.358 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:18:38.358 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-17 23:18:38.358 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 664
17-03-17 23:18:38.358 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 664
17-03-17 23:18:38.358 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:18:38.358 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:18:38.358 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-17 23:18:38.548 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37154 857
17-03-17 23:18:38.698 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1007
17-03-17 23:18:38.748 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 23:18:38.748 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 23:18:38.748 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:18:38.748 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:18:38.748 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 23:18:38.748 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 23:18:38.748 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 23:18:38.748 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:18:38.758 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:18:38.758 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 23:18:38.928 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1234
17-03-17 23:18:38.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1234
17-03-17 23:18:38.928 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:18:38.928 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:18:38.928 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 23:18:38.928 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1234
17-03-17 23:18:38.928 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1234
17-03-17 23:18:38.928 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:18:38.928 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:18:38.928 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 23:18:39.118 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP 1427
17-03-17 23:18:39.118 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:18:39.118 -07 000000610 INF: FPGA: 'CAMDBLSNAP 472 472 227 227 37154 150' command took 2 ms to send, 1426 ms to get response, and 1434 ms overall
17-03-17 23:18:39.118 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:18:39.118 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71337890625, Z-Position -0.169288696955637. ------
17-03-17 23:18:39.128 -07 000000627 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17571 mm
17-03-17 23:18:39.128 -07 000000627 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:18:39.128 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:18:39.128 -07 000000482 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 23:18:39.128 -07 000000482 INF: Y Motor: Moving to 66.5526 mm, started at 65.7134 mm, delta = 0.8392 mm
17-03-17 23:18:39.128 -07 000000593 INF: Z Motor: Entering MoveAbsStepped (DAC = 38384, sync = True, waitForSettling = False)
17-03-17 23:18:39.128 -07 000000593 INF: Z Motor: Moving to -0.175711 mm, started at -0.169289 mm, distance = -6.42 um
17-03-17 23:18:39.128 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:18:39.138 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:18:39.138 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:18:39.138 -07 000000623 INF: FPGA: Recv YRDPOS 134581
17-03-17 23:18:39.148 -07 000000593 INF: FPGA: Xmit ZDACW 38384\n [Z Motor]
17-03-17 23:18:39.148 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 23:18:39.148 -07 000000482 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:18:39.148 -07 000000482 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:18:39.148 -07 000000482 INF: Y Motor: Moving 1343 steps-19
17-03-17 23:18:39.148 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 23:18:39.158 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:18:39.158 -07 000000593 INF: FPGA: 'ZDACW 38384' command took 2 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 23:18:39.168 -07 000000482 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:18:39.178 -07 000000593 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:18:39.178 -07 000000623 INF: FPGA: Recv ZDACR 38384
17-03-17 23:18:39.188 -07 000000593 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:18:39.188 -07 000000593 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-17 23:18:39.238 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 74, FrontChillerTemperature: 3.999021,
17-03-17 23:18:39.328 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 23:18:39.328 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 23:18:39.328 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:18:39.328 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 23:18:39.328 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 23:18:39.328 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:18:39.338 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:18:39.338 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 23:18:39.338 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 23:18:39.338 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 23:18:39.358 -07 000000541 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:18:39.358 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 199 ms to get response, and 228 ms overall
17-03-17 23:18:39.538 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 23:18:39.538 -07 000000482 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 23:18:39.578 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:18:39.588 -07 000000623 INF: FPGA: Recv YRDPOS 136270
17-03-17 23:18:39.588 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 23:18:39.588 -07 000000482 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:18:39.588 -07 000000482 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 23:18:39.588 -07 000000482 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.839 mm, average velocity = 2.130 mm/sec
17-03-17 23:18:40.538 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:18:40.538 -07 000000462 INF: FPGA: Recv YRDPOS 136271
17-03-17 23:18:40.548 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:40.548 -07 000000482 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:18:40.568 -07 000000482 INF: Y Motor: After move to 66.552605, error = -0.014030, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:18:40.568 -07 000000482 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 23:18:40.568 -07 000000482 INF: Y Motor: Moved to 66.5386 after 1441 ms (table move)
17-03-17 23:18:40.578 -07 000000627 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175711 mm (DAC = 38384)
17-03-17 23:18:40.578 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:40.578 -07 000000623 INF: FPGA: Recv ZSGSRD 36642
17-03-17 23:18:40.588 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:40.588 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:40.588 -07 000000541 INF: FPGA: Recv ZSGSRD 36645
17-03-17 23:18:40.598 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:40.598 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:40.598 -07 000000409 INF: FPGA: Recv ZSGSRD 36645
17-03-17 23:18:40.608 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:40.608 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:40.608 -07 000000482 INF: FPGA: Recv ZSGSRD 36642
17-03-17 23:18:40.618 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:40.618 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:40.618 -07 000000623 INF: FPGA: Recv ZSGSRD 36651
17-03-17 23:18:40.628 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:40.628 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:40.628 -07 000000541 INF: FPGA: Recv ZSGSRD 36646
17-03-17 23:18:40.638 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:40.638 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:40.638 -07 000000409 INF: FPGA: Recv ZSGSRD 36640
17-03-17 23:18:40.648 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:40.648 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:40.648 -07 000000551 INF: FPGA: Recv ZSGSRD 36634
17-03-17 23:18:40.658 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:40.658 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:40.658 -07 000000623 INF: FPGA: Recv ZSGSRD 36637
17-03-17 23:18:40.668 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:40.668 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:40.668 -07 000000541 INF: FPGA: Recv ZSGSRD 36648
17-03-17 23:18:40.678 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:40.678 -07 000000627 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:18:40.678 -07 000000409 INF: FPGA: Recv ZPIEZORD 32829
17-03-17 23:18:40.688 -07 000000627 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:40.688 -07 000000627 INF: Z Motor: Piezo is near 50.1 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.857 V. Piezo Error = -8.4 V.
17-03-17 23:18:40.688 -07 000000627 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.7 um, Read 10 ADC samples: Avg = 36643 (-174.8 uncal um), Error = 0.9 uncal um, Median = 36644 (-174.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36634 (-174.8 uncal um), Max = 36651 (-174.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 23:18:40.688 -07 000000627 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36643, posNoise = 8, negNoise = 9
17-03-17 23:18:40.688 -07 000000627 INF: Z Motor: After move to -0.175711, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:18:40.688 -07 000000627 INF: Z Motor: Settle wait time = 1445 ms, measure time = 110 ms (allowed 150 ms), total time = 1555 ms
17-03-17 23:18:40.688 -07 000000627 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 23:18:40.728 -07 000000627 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1597 ms
17-03-17 23:18:40.728 -07 000000627 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:18:40.728 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:18:40.728 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:18:40.728 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:18:40.728 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:18:40.728 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:18:40.728 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:18:40.728 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:18:40.738 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:18:40.738 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 23:18:40.738 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:18:40.748 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 23:18:40.748 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 23:18:40.748 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:18:40.788 -07 000000448 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:18:40.988 -07 000000486 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:18:40.988 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:18:40.988 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:18:40.998 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 658880552, 0x0, 559484976) start.
17-03-17 23:18:41.028 -07 000000409 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:18:41.028 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 23:18:41.028 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 23:18:41.108 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 658880552, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 23:18:41.108 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:18:41.118 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 23:18:41.118 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-17 23:18:41.128 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:18:41.128 -07 000000382 INF: Autofocus start
17-03-17 23:18:41.128 -07 000000382 INF: MeasureProfile start
17-03-17 23:18:41.128 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:18:41.138 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:18:41.138 -07 000000541 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:18:41.138 -07 000000382 INF: MeasureProfile done
17-03-17 23:18:41.138 -07 000000382 INF: X=16  Z correction [um]=0.01042744
17-03-17 23:18:41.138 -07 000000382 INF: Autofocus finished
17-03-17 23:18:41.338 -07 000000593 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:18:41.338 -07 000000541 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:18:41.338 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53857421875, Z-position -0.175725757521682. ----------
17-03-17 23:18:41.348 -07 000000610 INF: Cycle	74	Tile	9	Exposure Settings		A	472	G	227	T	227	C	472
17-03-17 23:18:41.348 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36899, sync = True, waitForSettling = True)
17-03-17 23:18:41.348 -07 000000610 INF: Z Motor: Moving to -0.168913 mm, started at -0.175726 mm, distance = 6.81 um
17-03-17 23:18:41.348 -07 000000610 INF: FPGA: Xmit ZDACW 36899\n [Z Motor]
17-03-17 23:18:41.348 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 23:18:41.358 -07 000000610 INF: FPGA: 'ZDACW 36899' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:18:41.358 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:18:41.358 -07 000000382 INF: FPGA: Recv ZDACR 36899
17-03-17 23:18:41.368 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:41.368 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:18:41.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:41.518 -07 000000541 INF: FPGA: Recv ZSGSRD 35587
17-03-17 23:18:41.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:18:41.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:41.528 -07 000000561 INF: FPGA: Recv ZSGSRD 35588
17-03-17 23:18:41.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:41.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:41.538 -07 000000482 INF: FPGA: Recv ZSGSRD 35581
17-03-17 23:18:41.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:41.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:41.548 -07 000000462 INF: FPGA: Recv ZSGSRD 35584
17-03-17 23:18:41.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:41.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:41.558 -07 000000409 INF: FPGA: Recv ZSGSRD 35580
17-03-17 23:18:41.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:41.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:41.568 -07 000000561 INF: FPGA: Recv ZSGSRD 35582
17-03-17 23:18:41.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:41.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:41.578 -07 000000618 INF: FPGA: Recv ZSGSRD 35582
17-03-17 23:18:41.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:41.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:41.588 -07 000000623 INF: FPGA: Recv ZSGSRD 35587
17-03-17 23:18:41.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:41.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:41.598 -07 000000409 INF: FPGA: Recv ZSGSRD 35584
17-03-17 23:18:41.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:41.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:41.608 -07 000000561 INF: FPGA: Recv ZSGSRD 35586
17-03-17 23:18:41.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:41.618 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:18:41.618 -07 000000486 INF: FPGA: Recv ZPIEZORD 31429
17-03-17 23:18:41.628 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:41.628 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.630 V. Piezo Error = -9.2 V.
17-03-17 23:18:41.628 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.9 um, Read 10 ADC samples: Avg = 35584 (-168.1 uncal um), Error = 0.9 uncal um, Median = 35584 (-168.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35580 (-168.0 uncal um), Max = 35588 (-168.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:18:41.628 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35584, posNoise = 4, negNoise = 4
17-03-17 23:18:41.628 -07 000000610 INF: Z Motor: After move to -0.168913, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:18:41.628 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 23:18:41.628 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:18:41.628 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:18:41.628 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:18:41.628 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:18:41.628 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:18:41.628 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:18:41.628 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:18:41.628 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:18:41.628 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:18:41.628 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:18:41.628 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:18:41.628 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:18:41.638 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 23:18:41.638 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:18:41.638 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 23:18:41.638 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:18:41.648 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 23:18:41.648 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:18:41.648 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 23:18:41.648 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:18:41.648 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 472 472 227 227 37076 150\n [Camera]
17-03-17 23:18:41.848 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:18:42.058 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:18:42.058 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 73. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1178, R2=1229, Total=2407. Warn if over 250 bubbles per interval.
17-03-17 23:18:42.318 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 664
17-03-17 23:18:42.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 664
17-03-17 23:18:42.318 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:18:42.318 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:18:42.318 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 23:18:42.318 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 664
17-03-17 23:18:42.318 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 664
17-03-17 23:18:42.318 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:18:42.318 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:18:42.328 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 23:18:42.508 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37076 857
17-03-17 23:18:42.658 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1007
17-03-17 23:18:42.708 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 23:18:42.708 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 23:18:42.708 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:18:42.708 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 23:18:42.708 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 23:18:42.708 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:18:42.718 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:18:42.718 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 23:18:42.718 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:18:42.718 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 23:18:42.888 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1234
17-03-17 23:18:42.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1234
17-03-17 23:18:42.888 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:18:42.888 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:18:42.888 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 23:18:42.888 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1234
17-03-17 23:18:42.888 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1234
17-03-17 23:18:42.888 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:18:42.888 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:18:42.888 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 23:18:43.078 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1427
17-03-17 23:18:43.078 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:18:43.078 -07 000000610 INF: FPGA: 'CAMDBLSNAP 472 472 227 227 37076 150' command took 2 ms to send, 1428 ms to get response, and 1434 ms overall
17-03-17 23:18:43.088 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:18:43.088 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53857421875, Z-Position -0.168922516863557. ------
17-03-17 23:18:43.208 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:18:43.208 -07 000000593 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17569 mm
17-03-17 23:18:43.208 -07 000000593 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:18:43.208 -07 000000551 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 23:18:43.208 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:18:43.208 -07 000000551 INF: Y Motor: Moving to 67.3826 mm, started at 66.5386 mm, delta = 0.8440 mm
17-03-17 23:18:43.208 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 38379, sync = True, waitForSettling = False)
17-03-17 23:18:43.208 -07 000000623 INF: Z Motor: Moving to -0.175688 mm, started at -0.168923 mm, distance = -6.77 um
17-03-17 23:18:43.218 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:18:43.218 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:18:43.218 -07 000000462 INF: FPGA: Recv YRDPOS 136271
17-03-17 23:18:43.228 -07 000000623 INF: FPGA: Xmit ZDACW 38379\n [Z Motor]
17-03-17 23:18:43.228 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 23:18:43.228 -07 000000551 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:18:43.228 -07 000000551 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:18:43.228 -07 000000551 INF: Y Motor: Moving 1350 steps-30
17-03-17 23:18:43.228 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 23:18:43.238 -07 000000482 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:18:43.238 -07 000000623 INF: FPGA: 'ZDACW 38379' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 23:18:43.248 -07 000000551 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:18:43.258 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:18:43.258 -07 000000382 INF: FPGA: Recv ZDACR 38379
17-03-17 23:18:43.268 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:18:43.268 -07 000000623 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-17 23:18:43.278 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 23:18:43.278 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 23:18:43.278 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:18:43.288 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:18:43.288 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 23:18:43.288 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 23:18:43.288 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:18:43.288 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 23:18:43.298 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 23:18:43.298 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 23:18:43.438 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:18:43.438 -07 000000482 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 23:18:43.618 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-17 23:18:43.618 -07 000000551 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 23:18:43.658 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:18:43.668 -07 000000623 INF: FPGA: Recv YRDPOS 137977
17-03-17 23:18:43.668 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 23:18:43.668 -07 000000551 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:18:43.668 -07 000000551 INF: Y Motor: Position error before settling (table move) = -23 encoder counts (-0.011 mm)
17-03-17 23:18:43.668 -07 000000551 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.126 mm/sec
17-03-17 23:18:44.598 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 74, FrontChillerTemperature: 4.012614,
17-03-17 23:18:44.618 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:18:44.618 -07 000000541 INF: FPGA: Recv YRDPOS 137977
17-03-17 23:18:44.628 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:18:44.628 -07 000000551 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:18:44.648 -07 000000551 INF: Y Motor: After move to 67.382607, error = -0.011024, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:18:44.648 -07 000000551 INF: Y Motor: Position error after settling (table move) = -23 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:18:44.648 -07 000000551 INF: Y Motor: Moved to 67.3716 after 1442 ms (table move)
17-03-17 23:18:44.658 -07 000000593 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175688 mm (DAC = 38379)
17-03-17 23:18:44.658 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:44.658 -07 000000382 INF: FPGA: Recv ZSGSRD 36645
17-03-17 23:18:44.668 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:18:44.668 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:44.668 -07 000000501 INF: FPGA: Recv ZSGSRD 36637
17-03-17 23:18:44.678 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:44.678 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:44.678 -07 000000541 INF: FPGA: Recv ZSGSRD 36645
17-03-17 23:18:44.688 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:44.688 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:44.688 -07 000000462 INF: FPGA: Recv ZSGSRD 36647
17-03-17 23:18:44.698 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:44.698 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:44.698 -07 000000623 INF: FPGA: Recv ZSGSRD 36637
17-03-17 23:18:44.708 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:44.708 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:44.708 -07 000000382 INF: FPGA: Recv ZSGSRD 36642
17-03-17 23:18:44.718 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:44.728 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:44.728 -07 000000561 INF: FPGA: Recv ZSGSRD 36636
17-03-17 23:18:44.738 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:18:44.738 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:44.738 -07 000000462 INF: FPGA: Recv ZSGSRD 36637
17-03-17 23:18:44.748 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:44.748 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:44.748 -07 000000623 INF: FPGA: Recv ZSGSRD 36634
17-03-17 23:18:44.758 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:44.758 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:44.758 -07 000000541 INF: FPGA: Recv ZSGSRD 36635
17-03-17 23:18:44.768 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:44.768 -07 000000593 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:18:44.768 -07 000000482 INF: FPGA: Recv ZPIEZORD 32858
17-03-17 23:18:44.778 -07 000000593 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:44.778 -07 000000593 INF: Z Motor: Piezo is near 50.2 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.856 V. Piezo Error = -8.4 V.
17-03-17 23:18:44.778 -07 000000593 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.7 um, Read 10 ADC samples: Avg = 36640 (-174.8 uncal um), Error = 0.9 uncal um, Median = 36637 (-174.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36634 (-174.8 uncal um), Max = 36647 (-174.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:18:44.778 -07 000000593 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36640, posNoise = 7, negNoise = 6
17-03-17 23:18:44.778 -07 000000593 INF: Z Motor: After move to -0.175688, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:18:44.778 -07 000000593 INF: Z Motor: Settle wait time = 1445 ms, measure time = 118 ms (allowed 150 ms), total time = 1563 ms
17-03-17 23:18:44.778 -07 000000593 INF: Z Motor: Waiting extra 32 ms after reading position to reach expected total of 150 ms
17-03-17 23:18:44.818 -07 000000593 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-17 23:18:44.818 -07 000000593 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:18:44.818 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:18:44.818 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:18:44.818 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:18:44.818 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:18:44.818 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:18:44.818 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:18:44.818 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:18:44.818 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:18:44.828 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:18:44.828 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:18:44.828 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 23:18:44.828 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 23:18:44.838 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:18:44.878 -07 000000448 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:18:45.078 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:18:45.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:18:45.078 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:18:45.088 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-17 23:18:45.118 -07 000000551 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:18:45.118 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-17 23:18:45.118 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 23:18:45.198 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 23:18:45.198 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:18:45.198 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:18:45.198 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 23:18:45.218 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:18:45.218 -07 000000462 INF: Autofocus start
17-03-17 23:18:45.218 -07 000000462 INF: MeasureProfile start
17-03-17 23:18:45.218 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:18:45.228 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:18:45.228 -07 000000486 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:18:45.238 -07 000000462 INF: MeasureProfile done
17-03-17 23:18:45.238 -07 000000462 INF: X=32  Z correction [um]=0.09220707
17-03-17 23:18:45.248 -07 000000462 INF: Autofocus finished
17-03-17 23:18:45.428 -07 000000541 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:18:45.428 -07 000000486 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:18:45.428 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37158203125, Z-position -0.175706484885256. ----------
17-03-17 23:18:45.428 -07 000000610 INF: Cycle	74	Tile	10	Exposure Settings		A	472	G	227	T	227	C	472
17-03-17 23:18:45.438 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36912, sync = True, waitForSettling = True)
17-03-17 23:18:45.438 -07 000000610 INF: Z Motor: Moving to -0.168972 mm, started at -0.175706 mm, distance = 6.73 um
17-03-17 23:18:45.438 -07 000000610 INF: FPGA: Xmit ZDACW 36912\n [Z Motor]
17-03-17 23:18:45.438 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 23:18:45.448 -07 000000610 INF: FPGA: 'ZDACW 36912' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:18:45.448 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:18:45.448 -07 000000462 INF: FPGA: Recv ZDACR 36912
17-03-17 23:18:45.458 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:45.458 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:18:45.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:45.608 -07 000000551 INF: FPGA: Recv ZSGSRD 35594
17-03-17 23:18:45.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:45.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:45.618 -07 000000482 INF: FPGA: Recv ZSGSRD 35591
17-03-17 23:18:45.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:45.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:45.628 -07 000000448 INF: FPGA: Recv ZSGSRD 35593
17-03-17 23:18:45.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:45.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:45.638 -07 000000561 INF: FPGA: Recv ZSGSRD 35598
17-03-17 23:18:45.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:45.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:45.648 -07 000000551 INF: FPGA: Recv ZSGSRD 35595
17-03-17 23:18:45.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:45.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:45.658 -07 000000486 INF: FPGA: Recv ZSGSRD 35590
17-03-17 23:18:45.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:45.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:45.668 -07 000000462 INF: FPGA: Recv ZSGSRD 35596
17-03-17 23:18:45.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:45.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:45.678 -07 000000627 INF: FPGA: Recv ZSGSRD 35596
17-03-17 23:18:45.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:45.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:45.688 -07 000000382 INF: FPGA: Recv ZSGSRD 35593
17-03-17 23:18:45.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:45.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:45.698 -07 000000623 INF: FPGA: Recv ZSGSRD 35593
17-03-17 23:18:45.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:45.708 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:18:45.708 -07 000000618 INF: FPGA: Recv ZPIEZORD 31442
17-03-17 23:18:45.718 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:45.718 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.632 V. Piezo Error = -9.2 V.
17-03-17 23:18:45.718 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.0 um, Read 10 ADC samples: Avg = 35594 (-168.1 uncal um), Error = 0.9 uncal um, Median = 35594 (-168.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35590 (-168.1 uncal um), Max = 35598 (-168.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:18:45.718 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35594, posNoise = 4, negNoise = 4
17-03-17 23:18:45.718 -07 000000610 INF: Z Motor: After move to -0.168972, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:18:45.718 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 23:18:45.718 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:18:45.718 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:18:45.718 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:18:45.718 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:18:45.718 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:18:45.718 -07 000000409 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:18:45.718 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:18:45.718 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:18:45.718 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:18:45.718 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:18:45.718 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:18:45.718 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:18:45.718 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 23:18:45.728 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:18:45.728 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:18:45.728 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:18:45.738 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 23:18:45.738 -07 000000409 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 23:18:45.738 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-17 23:18:45.738 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 23:18:45.738 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 472 472 227 227 37089 150\n [Camera]
17-03-17 23:18:45.938 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:18:46.408 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 664
17-03-17 23:18:46.408 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 664
17-03-17 23:18:46.418 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:18:46.418 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 664
17-03-17 23:18:46.418 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 664
17-03-17 23:18:46.418 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:18:46.418 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:18:46.418 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 23:18:46.428 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:18:46.428 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 23:18:46.608 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37089 857
17-03-17 23:18:46.758 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1007
17-03-17 23:18:46.798 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 23:18:46.798 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 23:18:46.798 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:18:46.798 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 23:18:46.798 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms.
17-03-17 23:18:46.798 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:18:46.808 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:18:46.808 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 23:18:46.808 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:18:46.818 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 23:18:46.978 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1234
17-03-17 23:18:46.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1234
17-03-17 23:18:46.988 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:18:46.988 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1234
17-03-17 23:18:46.988 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1234
17-03-17 23:18:46.988 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:18:47.108 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:18:47.108 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-17 23:18:47.108 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:18:47.108 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 73. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1178, R2=1229, Total=2407. Warn if over 250 bubbles per interval.
17-03-17 23:18:47.108 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:18:47.108 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-17 23:18:47.178 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1426
17-03-17 23:18:47.178 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:18:47.178 -07 000000610 INF: FPGA: 'CAMDBLSNAP 472 472 227 227 37089 150' command took 2 ms to send, 1421 ms to get response, and 1433 ms overall
17-03-17 23:18:47.178 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:18:47.178 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37158203125, Z-Position -0.168986758984974. ------
17-03-17 23:18:47.178 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:18:47.178 -07 000000541 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17530 mm
17-03-17 23:18:47.178 -07 000000541 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:18:47.188 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 23:18:47.188 -07 000000623 INF: Y Motor: Moving to 68.2126 mm, started at 67.3716 mm, delta = 0.8410 mm
17-03-17 23:18:47.188 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:18:47.188 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:18:47.188 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 38295, sync = True, waitForSettling = False)
17-03-17 23:18:47.188 -07 000000627 INF: Z Motor: Moving to -0.175303 mm, started at -0.168987 mm, distance = -6.32 um
17-03-17 23:18:47.188 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:18:47.188 -07 000000486 INF: FPGA: Recv YRDPOS 137977
17-03-17 23:18:47.198 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:47.198 -07 000000623 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:18:47.198 -07 000000623 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:18:47.198 -07 000000623 INF: Y Motor: Moving 1346 steps-23
17-03-17 23:18:47.198 -07 000000627 INF: FPGA: Xmit ZDACW 38295\n [Z Motor]
17-03-17 23:18:47.198 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 23:18:47.208 -07 000000448 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:18:47.208 -07 000000627 INF: FPGA: 'ZDACW 38295' command took 1 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 23:18:47.218 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:18:47.228 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:18:47.228 -07 000000486 INF: FPGA: Recv ZDACR 38295
17-03-17 23:18:47.238 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 23:18:47.238 -07 000000627 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 23:18:47.408 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:18:47.408 -07 000000448 INF: FPGA: 'FOCMRRFOC' command took 2 ms to send, 195 ms to get response, and 224 ms overall
17-03-17 23:18:47.508 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 23:18:47.508 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 23:18:47.508 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:18:47.508 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 23:18:47.508 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 23:18:47.508 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:18:47.508 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:18:47.508 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:18:47.508 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 528 ms.
17-03-17 23:18:47.518 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 531 ms.
17-03-17 23:18:47.588 -07 000000462 INF: FPGA: Recv YMVTILE
17-03-17 23:18:47.588 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 23:18:47.628 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:18:47.638 -07 000000448 INF: FPGA: Recv YRDPOS 139682
17-03-17 23:18:47.638 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 23:18:47.638 -07 000000623 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:18:47.638 -07 000000623 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 23:18:47.638 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.841 mm, average velocity = 2.118 mm/sec
17-03-17 23:18:48.588 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:18:48.588 -07 000000501 INF: FPGA: Recv YRDPOS 139683
17-03-17 23:18:48.598 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:18:48.598 -07 000000623 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:18:48.618 -07 000000623 INF: Y Motor: After move to 68.212608, error = -0.008018, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:18:48.618 -07 000000623 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 23:18:48.618 -07 000000623 INF: Y Motor: Moved to 68.2046 after 1434 ms (table move)
17-03-17 23:18:48.618 -07 000000541 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175303 mm (DAC = 38295)
17-03-17 23:18:48.618 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:48.628 -07 000000486 INF: FPGA: Recv ZSGSRD 36588
17-03-17 23:18:48.628 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 23:18:48.628 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:48.628 -07 000000482 INF: FPGA: Recv ZSGSRD 36578
17-03-17 23:18:48.638 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:18:48.638 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:48.638 -07 000000448 INF: FPGA: Recv ZSGSRD 36584
17-03-17 23:18:48.648 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:48.648 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:48.648 -07 000000501 INF: FPGA: Recv ZSGSRD 36580
17-03-17 23:18:48.658 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:48.658 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:48.658 -07 000000382 INF: FPGA: Recv ZSGSRD 36574
17-03-17 23:18:48.668 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:48.668 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:48.668 -07 000000409 INF: FPGA: Recv ZSGSRD 36585
17-03-17 23:18:48.678 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:48.678 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:48.678 -07 000000486 INF: FPGA: Recv ZSGSRD 36577
17-03-17 23:18:48.688 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:48.688 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:48.688 -07 000000551 INF: FPGA: Recv ZSGSRD 36573
17-03-17 23:18:48.698 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:48.698 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:48.698 -07 000000382 INF: FPGA: Recv ZSGSRD 36578
17-03-17 23:18:48.708 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:48.708 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:48.708 -07 000000409 INF: FPGA: Recv ZSGSRD 36583
17-03-17 23:18:48.718 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:48.718 -07 000000541 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:18:48.718 -07 000000618 INF: FPGA: Recv ZPIEZORD 32793
17-03-17 23:18:48.728 -07 000000541 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:48.728 -07 000000541 INF: Z Motor: Piezo is near 50.1 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.843 V. Piezo Error = -8.4 V.
17-03-17 23:18:48.728 -07 000000541 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.3 um, Read 10 ADC samples: Avg = 36580 (-174.4 uncal um), Error = 0.9 uncal um, Median = 36579 (-174.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36573 (-174.4 uncal um), Max = 36588 (-174.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 23:18:48.728 -07 000000541 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36580, posNoise = 8, negNoise = 7
17-03-17 23:18:48.728 -07 000000541 INF: Z Motor: After move to -0.175303, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:18:48.728 -07 000000541 INF: Z Motor: Settle wait time = 1437 ms, measure time = 102 ms (allowed 150 ms), total time = 1539 ms
17-03-17 23:18:48.728 -07 000000541 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 23:18:48.778 -07 000000541 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1592 ms
17-03-17 23:18:48.778 -07 000000541 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:18:48.778 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:18:48.778 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:18:48.778 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:18:48.778 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:18:48.778 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:18:48.778 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:18:48.778 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 23:18:48.778 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:18:48.788 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:18:48.788 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:18:48.788 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 23:18:48.788 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 23:18:48.798 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:18:48.838 -07 000000486 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:18:49.038 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:18:49.038 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:18:49.038 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:18:49.038 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) start.
17-03-17 23:18:49.078 -07 000000501 INF: FPGA: Recv @CAMSNAP 282
17-03-17 23:18:49.078 -07 000000593 INF: FPGA: Recv CAMSNAP
17-03-17 23:18:49.078 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 287 ms overall
17-03-17 23:18:49.158 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 23:18:49.158 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:18:49.158 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:18:49.158 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 23:18:49.178 -07 000000409 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:18:49.178 -07 000000482 INF: Autofocus start
17-03-17 23:18:49.178 -07 000000482 INF: MeasureProfile start
17-03-17 23:18:49.178 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:18:49.188 -07 000000409 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:18:49.188 -07 000000409 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:18:49.188 -07 000000482 INF: MeasureProfile done
17-03-17 23:18:49.188 -07 000000482 INF: X=16  Z correction [um]=0.01042744
17-03-17 23:18:49.188 -07 000000482 INF: Autofocus finished
17-03-17 23:18:49.388 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:18:49.388 -07 000000409 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:18:49.388 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20458984375, Z-position -0.175321032156751. ----------
17-03-17 23:18:49.398 -07 000000610 INF: Cycle	74	Tile	11	Exposure Settings		A	472	G	227	T	227	C	472
17-03-17 23:18:49.398 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36810, sync = True, waitForSettling = True)
17-03-17 23:18:49.398 -07 000000610 INF: Z Motor: Moving to -0.168505 mm, started at -0.175321 mm, distance = 6.82 um
17-03-17 23:18:49.398 -07 000000610 INF: FPGA: Xmit ZDACW 36810\n [Z Motor]
17-03-17 23:18:49.398 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 23:18:49.408 -07 000000610 INF: FPGA: 'ZDACW 36810' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:18:49.408 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:18:49.408 -07 000000593 INF: FPGA: Recv ZDACR 36810
17-03-17 23:18:49.418 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:49.418 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:18:49.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:49.568 -07 000000501 INF: FPGA: Recv ZSGSRD 35516
17-03-17 23:18:49.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:49.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:49.578 -07 000000627 INF: FPGA: Recv ZSGSRD 35526
17-03-17 23:18:49.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:49.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:49.588 -07 000000618 INF: FPGA: Recv ZSGSRD 35522
17-03-17 23:18:49.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:49.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:49.598 -07 000000561 INF: FPGA: Recv ZSGSRD 35522
17-03-17 23:18:49.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:49.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:49.608 -07 000000429 INF: FPGA: Recv ZSGSRD 35527
17-03-17 23:18:49.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:49.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:49.618 -07 000000382 INF: FPGA: Recv ZSGSRD 35517
17-03-17 23:18:49.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:49.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:49.628 -07 000000482 INF: FPGA: Recv ZSGSRD 35521
17-03-17 23:18:49.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:49.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:49.638 -07 000000627 INF: FPGA: Recv ZSGSRD 35518
17-03-17 23:18:49.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:49.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:49.658 -07 000000409 INF: FPGA: Recv ZSGSRD 35521
17-03-17 23:18:49.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:18:49.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:49.668 -07 000000618 INF: FPGA: Recv ZSGSRD 35517
17-03-17 23:18:49.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:49.678 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:18:49.678 -07 000000541 INF: FPGA: Recv ZPIEZORD 31383
17-03-17 23:18:49.688 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:49.688 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.617 V. Piezo Error = -9.1 V.
17-03-17 23:18:49.688 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.5 um, Read 10 ADC samples: Avg = 35521 (-167.6 uncal um), Error = 0.9 uncal um, Median = 35521 (-167.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35516 (-167.6 uncal um), Max = 35527 (-167.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:18:49.688 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35521, posNoise = 6, negNoise = 5
17-03-17 23:18:49.688 -07 000000610 INF: Z Motor: After move to -0.168505, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:18:49.688 -07 000000610 INF: Z Motor: MoveAbsStepped took 287 ms)
17-03-17 23:18:49.688 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:18:49.688 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:18:49.688 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:18:49.688 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:18:49.688 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:18:49.688 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:18:49.688 -07 000000409 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:18:49.688 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:18:49.688 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 23:18:49.688 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:18:49.688 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:18:49.688 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:18:49.698 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:18:49.698 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:18:49.698 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:18:49.698 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:18:49.708 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 23:18:49.708 -07 000000409 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:18:49.708 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 23:18:49.708 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 23:18:49.708 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 472 472 227 227 36987 150\n [Camera]
17-03-17 23:18:49.908 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:18:49.968 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 74, FrontChillerTemperature: 3.999021,
17-03-17 23:18:50.378 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 664
17-03-17 23:18:50.378 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 664
17-03-17 23:18:50.378 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:18:50.388 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 664
17-03-17 23:18:50.388 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:18:50.388 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 23:18:50.388 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 664
17-03-17 23:18:50.388 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:18:50.388 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:18:50.388 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 23:18:50.568 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36987 857
17-03-17 23:18:50.718 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1007
17-03-17 23:18:50.768 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 23:18:50.768 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 23:18:50.768 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:18:50.778 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:18:50.778 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 23:18:50.778 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 23:18:50.778 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 23:18:50.778 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:18:50.778 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:18:50.788 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 23:18:50.948 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1234
17-03-17 23:18:50.948 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1234
17-03-17 23:18:50.948 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:18:50.948 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:18:50.948 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2468220576, 0x0, 391868352) start.
17-03-17 23:18:50.948 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1234
17-03-17 23:18:50.948 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1234
17-03-17 23:18:50.948 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:18:50.948 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:18:50.948 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2503642840, 0x0, 418435064) start.
17-03-17 23:18:51.138 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1427
17-03-17 23:18:51.138 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:18:51.138 -07 000000610 INF: FPGA: 'CAMDBLSNAP 472 472 227 227 36987 150' command took 2 ms to send, 1427 ms to get response, and 1433 ms overall
17-03-17 23:18:51.138 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:18:51.138 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20458984375, Z-Position -0.168517791498626. ------
17-03-17 23:18:51.148 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:18:51.148 -07 000000448 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17509 mm
17-03-17 23:18:51.148 -07 000000448 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:18:51.148 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:18:51.148 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 38248, sync = True, waitForSettling = False)
17-03-17 23:18:51.158 -07 000000551 INF: Z Motor: Moving to -0.175088 mm, started at -0.168518 mm, distance = -6.57 um
17-03-17 23:18:51.158 -07 000000551 INF: FPGA: Xmit ZDACW 38248\n [Z Motor]
17-03-17 23:18:51.158 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:18:51.158 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 23:18:51.158 -07 000000618 INF: Y Motor: Moving to 69.0426 mm, started at 68.2046 mm, delta = 0.8380 mm
17-03-17 23:18:51.158 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 23:18:51.168 -07 000000551 INF: FPGA: 'ZDACW 38248' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:51.168 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:18:51.168 -07 000000576 INF: FPGA: Recv YRDPOS 139683
17-03-17 23:18:51.178 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:18:51.178 -07 000000618 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:18:51.178 -07 000000618 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:18:51.178 -07 000000618 INF: Y Motor: Moving 1341 steps-17
17-03-17 23:18:51.178 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:18:51.188 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:18:51.188 -07 000000541 INF: FPGA: Recv ZDACR 38248
17-03-17 23:18:51.198 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:18:51.198 -07 000000551 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-17 23:18:51.198 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:18:51.358 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2468220576, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 23:18:51.358 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 23:18:51.358 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:18:51.358 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2503642840, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 23:18:51.358 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 23:18:51.358 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:18:51.358 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:18:51.358 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 23:18:51.358 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 23:18:51.368 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 23:18:51.378 -07 000000409 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:18:51.378 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 223 ms overall
17-03-17 23:18:51.568 -07 000000541 INF: FPGA: Recv YMVTILE
17-03-17 23:18:51.568 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-17 23:18:51.608 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:18:51.618 -07 000000478 INF: FPGA: Recv YRDPOS 141366
17-03-17 23:18:51.618 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 23:18:51.618 -07 000000618 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:18:51.618 -07 000000618 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-17 23:18:51.618 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.838 mm, average velocity = 2.106 mm/sec
17-03-17 23:18:52.058 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:18:52.058 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 73. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1178, R2=1229, Total=2407. Warn if over 250 bubbles per interval.
17-03-17 23:18:52.568 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:18:52.568 -07 000000482 INF: FPGA: Recv YRDPOS 141366
17-03-17 23:18:52.578 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:18:52.578 -07 000000618 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:18:52.598 -07 000000618 INF: Y Motor: After move to 69.042610, error = -0.016243, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:18:52.598 -07 000000618 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:18:52.598 -07 000000618 INF: Y Motor: Moved to 69.0264 after 1445 ms (table move)
17-03-17 23:18:52.598 -07 000000448 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175088 mm (DAC = 38248)
17-03-17 23:18:52.598 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:52.608 -07 000000576 INF: FPGA: Recv ZSGSRD 36549
17-03-17 23:18:52.608 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 23:18:52.608 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:52.608 -07 000000561 INF: FPGA: Recv ZSGSRD 36542
17-03-17 23:18:52.618 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:18:52.618 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:52.618 -07 000000623 INF: FPGA: Recv ZSGSRD 36549
17-03-17 23:18:52.628 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:52.628 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:52.628 -07 000000551 INF: FPGA: Recv ZSGSRD 36543
17-03-17 23:18:52.638 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:52.638 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:52.638 -07 000000501 INF: FPGA: Recv ZSGSRD 36549
17-03-17 23:18:52.648 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:52.648 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:52.648 -07 000000561 INF: FPGA: Recv ZSGSRD 36545
17-03-17 23:18:52.658 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:52.658 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:52.658 -07 000000382 INF: FPGA: Recv ZSGSRD 36546
17-03-17 23:18:52.668 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:52.668 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:52.668 -07 000000576 INF: FPGA: Recv ZSGSRD 36544
17-03-17 23:18:52.678 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:52.678 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:52.678 -07 000000486 INF: FPGA: Recv ZSGSRD 36539
17-03-17 23:18:52.688 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:52.688 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:52.688 -07 000000561 INF: FPGA: Recv ZSGSRD 36545
17-03-17 23:18:52.698 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:52.698 -07 000000448 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:18:52.698 -07 000000409 INF: FPGA: Recv ZPIEZORD 32722
17-03-17 23:18:52.708 -07 000000448 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:52.708 -07 000000448 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.836 V. Piezo Error = -8.5 V.
17-03-17 23:18:52.708 -07 000000448 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.1 um, Read 10 ADC samples: Avg = 36545 (-174.2 uncal um), Error = 0.9 uncal um, Median = 36545 (-174.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36539 (-174.2 uncal um), Max = 36549 (-174.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:18:52.708 -07 000000448 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36545, posNoise = 4, negNoise = 6
17-03-17 23:18:52.708 -07 000000448 INF: Z Motor: After move to -0.175088, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:18:52.708 -07 000000448 INF: Z Motor: Settle wait time = 1449 ms, measure time = 101 ms (allowed 150 ms), total time = 1550 ms
17-03-17 23:18:52.708 -07 000000448 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 23:18:52.758 -07 000000448 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1606 ms
17-03-17 23:18:52.758 -07 000000448 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:18:52.758 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:18:52.758 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:18:52.758 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:18:52.758 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:18:52.758 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:18:52.758 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:18:52.758 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:18:52.758 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:18:52.768 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:18:52.768 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:18:52.768 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 23:18:52.768 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 23:18:52.778 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:18:52.828 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:18:53.028 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:18:53.028 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:18:53.028 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:18:53.028 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2539065104, 0x0, 559484976) start.
17-03-17 23:18:53.068 -07 000000627 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:18:53.068 -07 000000482 INF: FPGA: Recv CAMSNAP
17-03-17 23:18:53.068 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 288 ms overall
17-03-17 23:18:53.148 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2539065104, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 23:18:53.148 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:18:53.148 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:18:53.148 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 23:18:53.168 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:18:53.168 -07 000000429 INF: Autofocus start
17-03-17 23:18:53.168 -07 000000429 INF: MeasureProfile start
17-03-17 23:18:53.168 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:18:53.178 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:18:53.178 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:18:53.178 -07 000000429 INF: MeasureProfile done
17-03-17 23:18:53.178 -07 000000429 INF: X=-48  Z correction [um]=-0.3191189
17-03-17 23:18:53.178 -07 000000429 INF: Autofocus finished
17-03-17 23:18:53.378 -07 000000486 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:18:53.378 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:18:53.378 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.0263671875, Z-position -0.175096184731789. ----------
17-03-17 23:18:53.378 -07 000000610 INF: Cycle	74	Tile	12	Exposure Settings		A	472	G	227	T	227	C	472
17-03-17 23:18:53.388 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36691, sync = True, waitForSettling = True)
17-03-17 23:18:53.388 -07 000000610 INF: Z Motor: Moving to -0.167961 mm, started at -0.175096 mm, distance = 7.14 um
17-03-17 23:18:53.388 -07 000000610 INF: FPGA: Xmit ZDACW 36691\n [Z Motor]
17-03-17 23:18:53.388 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 23:18:53.398 -07 000000610 INF: FPGA: 'ZDACW 36691' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:53.398 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:18:53.398 -07 000000576 INF: FPGA: Recv ZDACR 36691
17-03-17 23:18:53.408 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:53.408 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:18:53.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:53.558 -07 000000478 INF: FPGA: Recv ZSGSRD 35434
17-03-17 23:18:53.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:18:53.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:53.568 -07 000000409 INF: FPGA: Recv ZSGSRD 35436
17-03-17 23:18:53.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:53.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:53.578 -07 000000551 INF: FPGA: Recv ZSGSRD 35433
17-03-17 23:18:53.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:53.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:53.588 -07 000000623 INF: FPGA: Recv ZSGSRD 35434
17-03-17 23:18:53.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:53.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:53.598 -07 000000429 INF: FPGA: Recv ZSGSRD 35437
17-03-17 23:18:53.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:53.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:53.608 -07 000000478 INF: FPGA: Recv ZSGSRD 35435
17-03-17 23:18:53.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:53.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:53.618 -07 000000409 INF: FPGA: Recv ZSGSRD 35439
17-03-17 23:18:53.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:53.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:53.628 -07 000000459 INF: FPGA: Recv ZSGSRD 35436
17-03-17 23:18:53.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:53.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:53.638 -07 000000448 INF: FPGA: Recv ZSGSRD 35438
17-03-17 23:18:53.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:53.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:53.648 -07 000000501 INF: FPGA: Recv ZSGSRD 35432
17-03-17 23:18:53.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:18:53.658 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:18:53.658 -07 000000541 INF: FPGA: Recv ZPIEZORD 31292
17-03-17 23:18:53.668 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:53.668 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.599 V. Piezo Error = -9.1 V.
17-03-17 23:18:53.668 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.0 um, Read 10 ADC samples: Avg = 35435 (-167.1 uncal um), Error = 0.9 uncal um, Median = 35436 (-167.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35432 (-167.1 uncal um), Max = 35439 (-167.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 23:18:53.668 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35435, posNoise = 4, negNoise = 3
17-03-17 23:18:53.668 -07 000000610 INF: Z Motor: After move to -0.167961, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:18:53.668 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 23:18:53.668 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:18:53.668 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:18:53.668 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:18:53.668 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:18:53.668 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:18:53.668 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:18:53.668 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:18:53.668 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:18:53.668 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:18:53.668 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:18:53.668 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:18:53.668 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:18:53.678 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:18:53.678 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:18:53.678 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:18:53.678 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:18:53.688 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 23:18:53.688 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:18:53.688 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 23:18:53.688 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 23:18:53.688 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 472 472 227 227 36867 150\n [Camera]
17-03-17 23:18:53.888 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:18:54.358 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 665
17-03-17 23:18:54.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 665
17-03-17 23:18:54.368 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:18:54.368 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:18:54.368 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 23:18:54.368 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 665
17-03-17 23:18:54.368 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 665
17-03-17 23:18:54.368 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:18:54.368 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:18:54.368 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 23:18:54.558 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36867 857
17-03-17 23:18:54.708 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1007
17-03-17 23:18:54.758 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 23:18:54.758 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 23:18:54.758 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:18:54.758 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 23:18:54.758 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 23:18:54.758 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:18:54.758 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:18:54.758 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 23:18:54.758 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:18:54.768 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 23:18:54.928 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1234
17-03-17 23:18:54.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1234
17-03-17 23:18:54.928 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:18:55.048 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1234
17-03-17 23:18:55.048 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1234
17-03-17 23:18:55.058 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:18:55.058 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:18:55.058 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 23:18:55.058 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:18:55.058 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 23:18:55.118 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1427
17-03-17 23:18:55.118 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:18:55.118 -07 000000610 INF: FPGA: 'CAMDBLSNAP 472 472 227 227 36867 150' command took 2 ms to send, 1429 ms to get response, and 1434 ms overall
17-03-17 23:18:55.128 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:18:55.128 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.0263671875, Z-Position -0.167965309254434. ------
17-03-17 23:18:55.128 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:18:55.128 -07 000000482 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17427 mm
17-03-17 23:18:55.128 -07 000000482 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:18:55.128 -07 000000429 INF: Z Motor: Entering MoveAbsStepped (DAC = 38069, sync = True, waitForSettling = False)
17-03-17 23:18:55.128 -07 000000429 INF: Z Motor: Moving to -0.174269 mm, started at -0.167965 mm, distance = -6.30 um
17-03-17 23:18:55.128 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:18:55.128 -07 000000627 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 23:18:55.128 -07 000000627 INF: Y Motor: Moving to 69.8726 mm, started at 69.0264 mm, delta = 0.8462 mm
17-03-17 23:18:55.138 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:18:55.138 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:18:55.138 -07 000000448 INF: FPGA: Recv YRDPOS 141367
17-03-17 23:18:55.148 -07 000000429 INF: FPGA: Xmit ZDACW 38069\n [Z Motor]
17-03-17 23:18:55.148 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:18:55.148 -07 000000627 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:18:55.148 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 23:18:55.148 -07 000000627 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:18:55.148 -07 000000627 INF: Y Motor: Moving 1353 steps-33
17-03-17 23:18:55.158 -07 000000459 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:18:55.158 -07 000000429 INF: FPGA: 'ZDACW 38069' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 23:18:55.168 -07 000000627 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:18:55.178 -07 000000429 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:18:55.178 -07 000000623 INF: FPGA: Recv ZDACR 38069
17-03-17 23:18:55.188 -07 000000429 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:18:55.188 -07 000000429 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-17 23:18:55.358 -07 000000593 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:18:55.358 -07 000000459 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 23:18:55.378 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 74, FrontChillerTemperature: 3.999021,
17-03-17 23:18:55.458 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 23:18:55.458 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 23:18:55.458 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:18:55.458 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 23:18:55.458 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 23:18:55.458 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:18:55.458 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:18:55.458 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:18:55.458 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 528 ms.
17-03-17 23:18:55.468 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 23:18:55.538 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 23:18:55.538 -07 000000627 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-17 23:18:55.578 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:18:55.588 -07 000000459 INF: FPGA: Recv YRDPOS 143078
17-03-17 23:18:55.588 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 23:18:55.588 -07 000000627 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:18:55.588 -07 000000627 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-17 23:18:55.588 -07 000000627 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.846 mm, average velocity = 2.159 mm/sec
17-03-17 23:18:56.538 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:18:56.538 -07 000000551 INF: FPGA: Recv YRDPOS 143078
17-03-17 23:18:56.548 -07 000000627 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:18:56.548 -07 000000627 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:18:56.568 -07 000000627 INF: Y Motor: After move to 69.872612, error = -0.010307, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:18:56.568 -07 000000627 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:18:56.568 -07 000000627 INF: Y Motor: Moved to 69.8623 after 1436 ms (table move)
17-03-17 23:18:56.568 -07 000000482 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174269 mm (DAC = 38069)
17-03-17 23:18:56.578 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:56.578 -07 000000429 INF: FPGA: Recv ZSGSRD 36421
17-03-17 23:18:56.588 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:18:56.588 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:56.588 -07 000000551 INF: FPGA: Recv ZSGSRD 36420
17-03-17 23:18:56.598 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:56.598 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:56.598 -07 000000429 INF: FPGA: Recv ZSGSRD 36422
17-03-17 23:18:56.608 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:56.608 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:56.608 -07 000000551 INF: FPGA: Recv ZSGSRD 36422
17-03-17 23:18:56.618 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:56.618 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:56.618 -07 000000429 INF: FPGA: Recv ZSGSRD 36411
17-03-17 23:18:56.628 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:56.628 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:56.628 -07 000000551 INF: FPGA: Recv ZSGSRD 36419
17-03-17 23:18:56.638 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:56.638 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:56.638 -07 000000462 INF: FPGA: Recv ZSGSRD 36416
17-03-17 23:18:56.648 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:56.648 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:56.648 -07 000000551 INF: FPGA: Recv ZSGSRD 36413
17-03-17 23:18:56.658 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:56.658 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:56.658 -07 000000429 INF: FPGA: Recv ZSGSRD 36418
17-03-17 23:18:56.668 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:56.668 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:56.668 -07 000000551 INF: FPGA: Recv ZSGSRD 36419
17-03-17 23:18:56.678 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:56.678 -07 000000482 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:18:56.678 -07 000000448 INF: FPGA: Recv ZPIEZORD 32609
17-03-17 23:18:56.688 -07 000000482 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:56.688 -07 000000482 INF: Z Motor: Piezo is near 49.7 V (nominally 0 to 100 V), expect near 58.1 V, since DAC is at 5.809 V. Piezo Error = -8.4 V.
17-03-17 23:18:56.688 -07 000000482 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.3 um, Read 10 ADC samples: Avg = 36418 (-173.4 uncal um), Error = 0.9 uncal um, Median = 36419 (-173.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36411 (-173.4 uncal um), Max = 36422 (-173.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 23:18:56.688 -07 000000482 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36418, posNoise = 4, negNoise = 7
17-03-17 23:18:56.688 -07 000000482 INF: Z Motor: After move to -0.174269, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:18:56.688 -07 000000482 INF: Z Motor: Settle wait time = 1441 ms, measure time = 111 ms (allowed 150 ms), total time = 1552 ms
17-03-17 23:18:56.688 -07 000000482 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 23:18:56.728 -07 000000482 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1595 ms
17-03-17 23:18:56.728 -07 000000482 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:18:56.728 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:18:56.728 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:18:56.728 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:18:56.728 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:18:56.728 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:18:56.728 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:18:56.728 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:18:56.728 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:18:56.738 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:18:56.738 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:18:56.738 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 23:18:56.738 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 23:18:56.748 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:18:56.788 -07 000000482 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:18:56.988 -07 000000409 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:18:56.988 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:18:56.988 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:18:56.998 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) start.
17-03-17 23:18:57.028 -07 000000459 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:18:57.028 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 23:18:57.028 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 285 ms overall
17-03-17 23:18:57.058 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:18:57.108 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 23:18:57.108 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:18:57.108 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:18:57.108 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-17 23:18:57.118 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 73. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1178, R2=1229, Total=2407. Warn if over 250 bubbles per interval.
17-03-17 23:18:57.128 -07 000000501 INF: Autofocus start
17-03-17 23:18:57.128 -07 000000501 INF: MeasureProfile start
17-03-17 23:18:57.128 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:18:57.128 -07 000000409 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:18:57.138 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:18:57.138 -07 000000627 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:18:57.138 -07 000000501 INF: MeasureProfile done
17-03-17 23:18:57.138 -07 000000501 INF: X=32  Z correction [um]=0.09220707
17-03-17 23:18:57.138 -07 000000501 INF: Autofocus finished
17-03-17 23:18:57.338 -07 000000623 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:18:57.338 -07 000000627 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:18:57.338 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.8623046875, Z-position -0.174280309789785. ----------
17-03-17 23:18:57.338 -07 000000610 INF: Cycle	74	Tile	13	Exposure Settings		A	472	G	227	T	227	C	472
17-03-17 23:18:57.348 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36601, sync = True, waitForSettling = True)
17-03-17 23:18:57.348 -07 000000610 INF: Z Motor: Moving to -0.167549 mm, started at -0.174280 mm, distance = 6.73 um
17-03-17 23:18:57.348 -07 000000610 INF: FPGA: Xmit ZDACW 36601\n [Z Motor]
17-03-17 23:18:57.348 -07 000000409 INF: FPGA: Recv ZDACW
17-03-17 23:18:57.358 -07 000000610 INF: FPGA: 'ZDACW 36601' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:18:57.358 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:18:57.358 -07 000000593 INF: FPGA: Recv ZDACR 36601
17-03-17 23:18:57.368 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:57.368 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:18:57.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:57.518 -07 000000486 INF: FPGA: Recv ZSGSRD 35371
17-03-17 23:18:57.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:18:57.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:57.528 -07 000000429 INF: FPGA: Recv ZSGSRD 35374
17-03-17 23:18:57.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:57.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:57.538 -07 000000623 INF: FPGA: Recv ZSGSRD 35373
17-03-17 23:18:57.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:57.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:57.548 -07 000000593 INF: FPGA: Recv ZSGSRD 35369
17-03-17 23:18:57.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:57.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:57.558 -07 000000627 INF: FPGA: Recv ZSGSRD 35376
17-03-17 23:18:57.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:57.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:57.568 -07 000000448 INF: FPGA: Recv ZSGSRD 35375
17-03-17 23:18:57.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:57.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:57.578 -07 000000459 INF: FPGA: Recv ZSGSRD 35371
17-03-17 23:18:57.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:57.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:57.588 -07 000000593 INF: FPGA: Recv ZSGSRD 35373
17-03-17 23:18:57.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:57.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:57.598 -07 000000627 INF: FPGA: Recv ZSGSRD 35373
17-03-17 23:18:57.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:57.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:18:57.608 -07 000000501 INF: FPGA: Recv ZSGSRD 35373
17-03-17 23:18:57.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:57.618 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:18:57.618 -07 000000623 INF: FPGA: Recv ZPIEZORD 31184
17-03-17 23:18:57.628 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:18:57.628 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.585 V. Piezo Error = -9.2 V.
17-03-17 23:18:57.628 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.5 um, Read 10 ADC samples: Avg = 35373 (-166.7 uncal um), Error = 0.9 uncal um, Median = 35373 (-166.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35369 (-166.7 uncal um), Max = 35376 (-166.7 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:18:57.628 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35373, posNoise = 3, negNoise = 4
17-03-17 23:18:57.628 -07 000000610 INF: Z Motor: After move to -0.167549, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:18:57.628 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 23:18:57.628 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:18:57.628 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:18:57.628 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:18:57.628 -07 000000409 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:18:57.628 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:18:57.628 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:18:57.628 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:18:57.628 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:18:57.628 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:18:57.628 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:18:57.628 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:18:57.628 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:18:57.638 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 23:18:57.638 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:18:57.638 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:18:57.638 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:18:57.648 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 23:18:57.648 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:18:57.648 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 23:18:57.648 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 23:18:57.648 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 472 472 227 227 36778 150\n [Camera]
17-03-17 23:18:57.848 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:18:58.318 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 664
17-03-17 23:18:58.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 664
17-03-17 23:18:58.318 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:18:58.318 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 664
17-03-17 23:18:58.318 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 664
17-03-17 23:18:58.318 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:18:58.328 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:18:58.328 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 23:18:58.328 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:18:58.328 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 23:18:58.508 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36778 857
17-03-17 23:18:58.668 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1010
17-03-17 23:18:58.708 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 23:18:58.708 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 23:18:58.708 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:18:58.708 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 23:18:58.708 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 23:18:58.708 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:18:58.708 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:18:58.708 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:18:58.708 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 23:18:58.718 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 23:18:58.888 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1234
17-03-17 23:18:58.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1234
17-03-17 23:18:58.888 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:18:58.888 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1234
17-03-17 23:18:58.888 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1234
17-03-17 23:18:58.888 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:18:58.888 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:18:58.888 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2468220576, 0x0, 418435064) start.
17-03-17 23:18:58.898 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:18:58.898 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 23:18:59.078 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1427
17-03-17 23:18:59.078 -07 000000482 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:18:59.078 -07 000000610 INF: FPGA: 'CAMDBLSNAP 472 472 227 227 36778 150' command took 2 ms to send, 1427 ms to get response, and 1433 ms overall
17-03-17 23:18:59.078 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:18:59.078 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.8623046875, Z-Position -0.167567008101645. ------
17-03-17 23:18:59.088 -07 000000459 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17405 mm
17-03-17 23:18:59.088 -07 000000459 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:18:59.088 -07 000000409 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:18:59.088 -07 000000482 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 23:18:59.088 -07 000000482 INF: Y Motor: Moving to 70.7026 mm, started at 69.8623 mm, delta = 0.8403 mm
17-03-17 23:18:59.088 -07 000000448 INF: Z Motor: Entering MoveAbsStepped (DAC = 38022, sync = True, waitForSettling = False)
17-03-17 23:18:59.088 -07 000000448 INF: Z Motor: Moving to -0.174054 mm, started at -0.167567 mm, distance = -6.49 um
17-03-17 23:18:59.088 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:18:59.098 -07 000000409 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:18:59.098 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:18:59.098 -07 000000462 INF: FPGA: Recv YRDPOS 143079
17-03-17 23:18:59.108 -07 000000448 INF: FPGA: Xmit ZDACW 38022\n [Z Motor]
17-03-17 23:18:59.108 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 23:18:59.108 -07 000000482 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:18:59.108 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 23:18:59.108 -07 000000482 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:18:59.108 -07 000000482 INF: Y Motor: Moving 1344 steps-21
17-03-17 23:18:59.118 -07 000000409 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:18:59.118 -07 000000448 INF: FPGA: 'ZDACW 38022' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 23:18:59.128 -07 000000482 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:18:59.138 -07 000000448 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:18:59.138 -07 000000382 INF: FPGA: Recv ZDACR 38022
17-03-17 23:18:59.148 -07 000000448 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:18:59.148 -07 000000448 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 23:18:59.288 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 23:18:59.288 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 23:18:59.288 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:18:59.298 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2468220576, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 23:18:59.298 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 23:18:59.298 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:18:59.298 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:18:59.298 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 23:18:59.298 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:18:59.308 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 23:18:59.318 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:18:59.318 -07 000000409 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 23:18:59.498 -07 000000486 INF: FPGA: Recv YMVTILE
17-03-17 23:18:59.498 -07 000000482 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 23:18:59.538 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:18:59.548 -07 000000382 INF: FPGA: Recv YRDPOS 144768
17-03-17 23:18:59.548 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 23:18:59.548 -07 000000482 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:18:59.548 -07 000000482 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 23:18:59.548 -07 000000482 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.840 mm, average velocity = 2.133 mm/sec
17-03-17 23:19:00.498 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:19:00.498 -07 000000462 INF: FPGA: Recv YRDPOS 144769
17-03-17 23:19:00.508 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:19:00.508 -07 000000482 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:19:00.528 -07 000000482 INF: Y Motor: After move to 70.702606, error = -0.014618, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:19:00.528 -07 000000482 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 23:19:00.528 -07 000000482 INF: Y Motor: Moved to 70.6880 after 1437 ms (table move)
17-03-17 23:19:00.528 -07 000000459 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174054 mm (DAC = 38022)
17-03-17 23:19:00.528 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:00.538 -07 000000501 INF: FPGA: Recv ZSGSRD 36387
17-03-17 23:19:00.538 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 23:19:00.538 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:00.538 -07 000000462 INF: FPGA: Recv ZSGSRD 36388
17-03-17 23:19:00.548 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:19:00.548 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:00.548 -07 000000486 INF: FPGA: Recv ZSGSRD 36390
17-03-17 23:19:00.558 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:00.558 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:00.558 -07 000000501 INF: FPGA: Recv ZSGSRD 36384
17-03-17 23:19:00.568 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:00.568 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:00.568 -07 000000382 INF: FPGA: Recv ZSGSRD 36384
17-03-17 23:19:00.578 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:00.578 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:00.578 -07 000000486 INF: FPGA: Recv ZSGSRD 36383
17-03-17 23:19:00.588 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:00.588 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:00.588 -07 000000623 INF: FPGA: Recv ZSGSRD 36387
17-03-17 23:19:00.598 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:00.598 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:00.598 -07 000000382 INF: FPGA: Recv ZSGSRD 36382
17-03-17 23:19:00.608 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:00.608 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:00.608 -07 000000486 INF: FPGA: Recv ZSGSRD 36380
17-03-17 23:19:00.618 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:00.618 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:00.618 -07 000000382 INF: FPGA: Recv ZSGSRD 36383
17-03-17 23:19:00.628 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:00.628 -07 000000459 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:19:00.628 -07 000000501 INF: FPGA: Recv ZPIEZORD 32524
17-03-17 23:19:00.638 -07 000000459 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:00.638 -07 000000459 INF: Z Motor: Piezo is near 49.5 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.802 V. Piezo Error = -8.5 V.
17-03-17 23:19:00.638 -07 000000459 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.1 um, Read 10 ADC samples: Avg = 36385 (-173.2 uncal um), Error = 0.9 uncal um, Median = 36384 (-173.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36380 (-173.2 uncal um), Max = 36390 (-173.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:19:00.638 -07 000000459 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36385, posNoise = 5, negNoise = 5
17-03-17 23:19:00.638 -07 000000459 INF: Z Motor: After move to -0.174054, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:19:00.638 -07 000000459 INF: Z Motor: Settle wait time = 1440 ms, measure time = 101 ms (allowed 150 ms), total time = 1541 ms
17-03-17 23:19:00.638 -07 000000459 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 23:19:00.688 -07 000000459 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1594 ms
17-03-17 23:19:00.688 -07 000000459 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:19:00.688 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:19:00.688 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:19:00.688 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:19:00.688 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:19:00.688 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:19:00.688 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:19:00.688 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:19:00.688 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:19:00.698 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 23:19:00.698 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:19:00.708 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 23:19:00.708 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 23:19:00.708 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:19:00.738 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 74, FrontChillerTemperature: 4.008536,
17-03-17 23:19:00.748 -07 000000593 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:19:00.948 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:19:00.948 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:19:00.948 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:19:00.958 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-17 23:19:00.988 -07 000000448 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:19:00.988 -07 000000486 INF: FPGA: Recv CAMSNAP
17-03-17 23:19:00.988 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 23:19:01.068 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 23:19:01.068 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:19:01.068 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:19:01.068 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 23:19:01.088 -07 000000409 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:19:01.088 -07 000000429 INF: Autofocus start
17-03-17 23:19:01.088 -07 000000429 INF: MeasureProfile start
17-03-17 23:19:01.088 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:19:01.098 -07 000000409 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:19:01.098 -07 000000409 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:19:01.098 -07 000000429 INF: MeasureProfile done
17-03-17 23:19:01.098 -07 000000429 INF: X=16  Z correction [um]=0.01042744
17-03-17 23:19:01.098 -07 000000429 INF: Autofocus finished
17-03-17 23:19:01.298 -07 000000448 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:19:01.298 -07 000000409 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:19:01.298 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68798828125, Z-position -0.174068310789107. ----------
17-03-17 23:19:01.308 -07 000000610 INF: Cycle	74	Tile	14	Exposure Settings		A	472	G	227	T	227	C	472
17-03-17 23:19:01.308 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36536, sync = True, waitForSettling = True)
17-03-17 23:19:01.308 -07 000000610 INF: Z Motor: Moving to -0.167251 mm, started at -0.174068 mm, distance = 6.82 um
17-03-17 23:19:01.308 -07 000000610 INF: FPGA: Xmit ZDACW 36536\n [Z Motor]
17-03-17 23:19:01.308 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 23:19:01.318 -07 000000610 INF: FPGA: 'ZDACW 36536' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:19:01.318 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:19:01.318 -07 000000593 INF: FPGA: Recv ZDACR 36536
17-03-17 23:19:01.328 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:01.328 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:19:01.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:01.478 -07 000000482 INF: FPGA: Recv ZSGSRD 35326
17-03-17 23:19:01.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:19:01.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:01.488 -07 000000501 INF: FPGA: Recv ZSGSRD 35324
17-03-17 23:19:01.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:01.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:01.498 -07 000000486 INF: FPGA: Recv ZSGSRD 35319
17-03-17 23:19:01.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:01.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:01.508 -07 000000593 INF: FPGA: Recv ZSGSRD 35325
17-03-17 23:19:01.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:01.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:01.518 -07 000000501 INF: FPGA: Recv ZSGSRD 35325
17-03-17 23:19:01.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:01.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:01.528 -07 000000593 INF: FPGA: Recv ZSGSRD 35327
17-03-17 23:19:01.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:01.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:01.538 -07 000000501 INF: FPGA: Recv ZSGSRD 35322
17-03-17 23:19:01.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:01.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:01.548 -07 000000593 INF: FPGA: Recv ZSGSRD 35327
17-03-17 23:19:01.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:01.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:01.558 -07 000000501 INF: FPGA: Recv ZSGSRD 35324
17-03-17 23:19:01.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:01.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:01.568 -07 000000593 INF: FPGA: Recv ZSGSRD 35326
17-03-17 23:19:01.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:01.578 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:19:01.578 -07 000000501 INF: FPGA: Recv ZPIEZORD 31155
17-03-17 23:19:01.588 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:01.588 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.575 V. Piezo Error = -9.2 V.
17-03-17 23:19:01.588 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.3 um, Read 10 ADC samples: Avg = 35324 (-166.4 uncal um), Error = 0.9 uncal um, Median = 35325 (-166.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35319 (-166.4 uncal um), Max = 35327 (-166.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:19:01.588 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35324, posNoise = 3, negNoise = 5
17-03-17 23:19:01.588 -07 000000610 INF: Z Motor: After move to -0.167251, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:19:01.588 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 23:19:01.588 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:19:01.588 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:19:01.588 -07 000000409 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:19:01.588 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:19:01.588 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:19:01.588 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:19:01.588 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:19:01.588 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:19:01.588 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:19:01.588 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:19:01.588 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:19:01.588 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:19:01.588 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:19:01.598 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:19:01.598 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:19:01.598 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:19:01.608 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 23:19:01.608 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 23:19:01.608 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 18 ms.
17-03-17 23:19:01.608 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 23:19:01.618 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 472 472 227 227 36713 150\n [Camera]
17-03-17 23:19:01.818 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:19:02.058 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:19:02.058 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 73. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1178, R2=1229, Total=2407. Warn if over 250 bubbles per interval.
17-03-17 23:19:02.288 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 664
17-03-17 23:19:02.288 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 664
17-03-17 23:19:02.288 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:19:02.288 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:19:02.288 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2503642840, 0x0, 391868352) start.
17-03-17 23:19:02.288 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 664
17-03-17 23:19:02.288 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 664
17-03-17 23:19:02.288 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:19:02.288 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:19:02.288 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 23:19:02.478 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36713 857
17-03-17 23:19:02.628 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1007
17-03-17 23:19:02.668 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2503642840, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 23:19:02.668 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 23:19:02.668 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:19:02.668 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 23:19:02.668 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 23:19:02.668 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:19:02.678 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:19:02.678 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 23:19:02.678 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:19:02.678 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 23:19:02.858 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1234
17-03-17 23:19:02.858 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1234
17-03-17 23:19:02.858 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:19:02.858 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:19:02.858 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 23:19:02.868 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1234
17-03-17 23:19:02.868 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1234
17-03-17 23:19:02.868 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:19:02.868 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:19:02.868 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-17 23:19:03.048 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 1427
17-03-17 23:19:03.048 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:19:03.048 -07 000000610 INF: FPGA: 'CAMDBLSNAP 472 472 227 227 36713 150' command took 2 ms to send, 1426 ms to get response, and 1434 ms overall
17-03-17 23:19:03.048 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:19:03.048 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.68798828125, Z-Position -0.167252221706699. ------
17-03-17 23:19:03.058 -07 000000429 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17398 mm
17-03-17 23:19:03.058 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:19:03.058 -07 000000429 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:19:03.058 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 23:19:03.058 -07 000000459 INF: Y Motor: Moving to 71.5326 mm, started at 70.6880 mm, delta = 0.8446 mm
17-03-17 23:19:03.058 -07 000000448 INF: Z Motor: Entering MoveAbsStepped (DAC = 38005, sync = True, waitForSettling = False)
17-03-17 23:19:03.058 -07 000000448 INF: Z Motor: Moving to -0.173976 mm, started at -0.167252 mm, distance = -6.72 um
17-03-17 23:19:03.058 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:19:03.068 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:19:03.068 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:19:03.068 -07 000000486 INF: FPGA: Recv YRDPOS 144769
17-03-17 23:19:03.078 -07 000000448 INF: FPGA: Xmit ZDACW 38005\n [Z Motor]
17-03-17 23:19:03.078 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 23:19:03.078 -07 000000459 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:19:03.078 -07 000000459 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:19:03.078 -07 000000459 INF: Y Motor: Moving 1351 steps-31
17-03-17 23:19:03.078 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 23:19:03.088 -07 000000593 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:19:03.088 -07 000000448 INF: FPGA: 'ZDACW 38005' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 23:19:03.098 -07 000000459 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:19:03.108 -07 000000448 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:19:03.108 -07 000000551 INF: FPGA: Recv ZDACR 38005
17-03-17 23:19:03.118 -07 000000448 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:19:03.118 -07 000000448 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-17 23:19:03.248 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 23:19:03.248 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 23:19:03.258 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:19:03.258 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 23:19:03.258 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 23:19:03.258 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:19:03.258 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:19:03.258 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 23:19:03.258 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 23:19:03.268 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 23:19:03.288 -07 000000486 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:19:03.288 -07 000000593 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 23:19:03.468 -07 000000551 INF: FPGA: Recv YMVTILE
17-03-17 23:19:03.468 -07 000000459 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 23:19:03.508 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:19:03.518 -07 000000551 INF: FPGA: Recv YRDPOS 146469
17-03-17 23:19:03.518 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 23:19:03.518 -07 000000459 INF: Y Motor: Encoder = 146469 = motor step 114428.9 = 71.5181 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:19:03.518 -07 000000459 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 23:19:03.518 -07 000000459 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.128 mm/sec
17-03-17 23:19:04.468 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:19:04.468 -07 000000462 INF: FPGA: Recv YRDPOS 146470
17-03-17 23:19:04.478 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:04.478 -07 000000459 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:19:04.498 -07 000000459 INF: Y Motor: After move to 71.532608, error = -0.014053, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:19:04.498 -07 000000459 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 23:19:04.498 -07 000000459 INF: Y Motor: Moved to 71.5186 after 1441 ms (table move)
17-03-17 23:19:04.498 -07 000000429 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173976 mm (DAC = 38005)
17-03-17 23:19:04.498 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:04.508 -07 000000459 INF: FPGA: Recv ZSGSRD 36371
17-03-17 23:19:04.518 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:19:04.518 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:04.518 -07 000000459 INF: FPGA: Recv ZSGSRD 36367
17-03-17 23:19:04.528 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:04.528 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:04.528 -07 000000459 INF: FPGA: Recv ZSGSRD 36378
17-03-17 23:19:04.538 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:04.538 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:04.538 -07 000000459 INF: FPGA: Recv ZSGSRD 36366
17-03-17 23:19:04.548 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:04.548 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:04.548 -07 000000459 INF: FPGA: Recv ZSGSRD 36369
17-03-17 23:19:04.558 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:04.558 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:04.558 -07 000000593 INF: FPGA: Recv ZSGSRD 36374
17-03-17 23:19:04.568 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:04.568 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:04.568 -07 000000462 INF: FPGA: Recv ZSGSRD 36382
17-03-17 23:19:04.578 -07 000000429 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:04.578 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:04.578 -07 000000409 INF: FPGA: Recv ZSGSRD 36373
17-03-17 23:19:04.588 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:04.588 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:04.588 -07 000000462 INF: FPGA: Recv ZSGSRD 36362
17-03-17 23:19:04.598 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:04.598 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:04.598 -07 000000462 INF: FPGA: Recv ZSGSRD 36367
17-03-17 23:19:04.608 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:04.608 -07 000000429 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:19:04.608 -07 000000409 INF: FPGA: Recv ZPIEZORD 32503
17-03-17 23:19:04.618 -07 000000429 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:04.618 -07 000000429 INF: Z Motor: Piezo is near 49.4 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.799 V. Piezo Error = -8.6 V.
17-03-17 23:19:04.618 -07 000000429 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.0 um, Read 10 ADC samples: Avg = 36371 (-173.1 uncal um), Error = 0.9 uncal um, Median = 36370 (-173.1 uncal um), StdDev = 6 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 36362 (-173.0 uncal um), Max = 36382 (-173.2 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 23:19:04.618 -07 000000429 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36371, posNoise = 11, negNoise = 9
17-03-17 23:19:04.618 -07 000000429 INF: Z Motor: After move to -0.173976, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:19:04.618 -07 000000429 INF: Z Motor: Settle wait time = 1444 ms, measure time = 111 ms (allowed 150 ms), total time = 1555 ms
17-03-17 23:19:04.618 -07 000000429 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 23:19:04.658 -07 000000429 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1597 ms
17-03-17 23:19:04.658 -07 000000429 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:19:04.658 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:19:04.658 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:19:04.658 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:19:04.658 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:19:04.658 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:19:04.658 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:19:04.658 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:19:04.658 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:19:04.668 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 23:19:04.668 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:19:04.668 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 23:19:04.668 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 23:19:04.678 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:19:04.718 -07 000000551 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:19:04.918 -07 000000409 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:19:04.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:19:04.918 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:19:04.918 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2539065104, 0x0, 559484976) start.
17-03-17 23:19:04.958 -07 000000501 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:19:04.958 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-17 23:19:04.958 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 23:19:05.038 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2539065104, 0x0, 559484976) end. Duration was 118 ms.
17-03-17 23:19:05.038 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:19:05.038 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:19:05.038 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-17 23:19:05.058 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:19:05.058 -07 000000429 INF: Autofocus start
17-03-17 23:19:05.058 -07 000000429 INF: MeasureProfile start
17-03-17 23:19:05.068 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:19:05.068 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:19:05.068 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:19:05.068 -07 000000429 INF: MeasureProfile done
17-03-17 23:19:05.068 -07 000000429 INF: X=0  Z correction [um]=-0.0713522
17-03-17 23:19:05.068 -07 000000429 INF: Autofocus finished
17-03-17 23:19:05.268 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:19:05.268 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:19:05.268 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.5185546875, Z-position -0.173978371819123. ----------
17-03-17 23:19:05.268 -07 000000610 INF: Cycle	74	Tile	15	Exposure Settings		A	472	G	227	T	227	C	472
17-03-17 23:19:05.278 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36502, sync = True, waitForSettling = True)
17-03-17 23:19:05.278 -07 000000610 INF: Z Motor: Moving to -0.167095 mm, started at -0.173978 mm, distance = 6.88 um
17-03-17 23:19:05.278 -07 000000610 INF: FPGA: Xmit ZDACW 36502\n [Z Motor]
17-03-17 23:19:05.278 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 23:19:05.288 -07 000000610 INF: FPGA: 'ZDACW 36502' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:05.288 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:19:05.288 -07 000000627 INF: FPGA: Recv ZDACR 36502
17-03-17 23:19:05.298 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:05.298 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:19:05.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:05.448 -07 000000448 INF: FPGA: Recv ZSGSRD 35304
17-03-17 23:19:05.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:19:05.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:05.458 -07 000000627 INF: FPGA: Recv ZSGSRD 35299
17-03-17 23:19:05.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:05.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:05.468 -07 000000448 INF: FPGA: Recv ZSGSRD 35293
17-03-17 23:19:05.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:05.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:05.478 -07 000000409 INF: FPGA: Recv ZSGSRD 35303
17-03-17 23:19:05.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:05.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:05.488 -07 000000448 INF: FPGA: Recv ZSGSRD 35300
17-03-17 23:19:05.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:05.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:05.498 -07 000000409 INF: FPGA: Recv ZSGSRD 35301
17-03-17 23:19:05.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:05.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:05.508 -07 000000551 INF: FPGA: Recv ZSGSRD 35307
17-03-17 23:19:05.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:05.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:05.518 -07 000000627 INF: FPGA: Recv ZSGSRD 35299
17-03-17 23:19:05.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:05.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:05.528 -07 000000448 INF: FPGA: Recv ZSGSRD 35304
17-03-17 23:19:05.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:05.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:05.538 -07 000000627 INF: FPGA: Recv ZSGSRD 35299
17-03-17 23:19:05.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:05.548 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:19:05.548 -07 000000448 INF: FPGA: Recv ZPIEZORD 31106
17-03-17 23:19:05.558 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:05.558 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.570 V. Piezo Error = -9.2 V.
17-03-17 23:19:05.558 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.1 um, Read 10 ADC samples: Avg = 35301 (-166.2 uncal um), Error = 0.9 uncal um, Median = 35300 (-166.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35293 (-166.2 uncal um), Max = 35307 (-166.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 23:19:05.558 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35301, posNoise = 6, negNoise = 8
17-03-17 23:19:05.558 -07 000000610 INF: Z Motor: After move to -0.167095, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:19:05.558 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 23:19:05.558 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:19:05.558 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:19:05.558 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:19:05.558 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:19:05.558 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:19:05.558 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:19:05.558 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:19:05.558 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:19:05.558 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:19:05.558 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:19:05.558 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:19:05.558 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:19:05.558 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 23:19:05.558 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:19:05.568 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:19:05.568 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:19:05.568 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 23:19:05.568 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 23:19:05.578 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 23:19:05.578 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 23:19:05.578 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 472 472 227 227 36679 150\n [Camera]
17-03-17 23:19:05.788 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:19:06.098 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 74, FrontChillerTemperature: 4.018051,
17-03-17 23:19:06.258 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 664
17-03-17 23:19:06.258 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 664
17-03-17 23:19:06.258 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:19:06.258 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:19:06.258 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-17 23:19:06.258 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 664
17-03-17 23:19:06.258 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 664
17-03-17 23:19:06.258 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:19:06.258 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:19:06.258 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 23:19:06.448 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36679 857
17-03-17 23:19:06.598 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1007
17-03-17 23:19:06.628 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 23:19:06.628 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 23:19:06.628 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:19:06.638 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:19:06.638 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 23:19:06.638 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 23:19:06.638 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:19:06.638 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 23:19:06.638 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:19:06.638 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 23:19:06.828 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1234
17-03-17 23:19:06.828 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1234
17-03-17 23:19:06.828 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:19:06.828 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:19:06.828 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 23:19:06.828 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1234
17-03-17 23:19:06.828 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1234
17-03-17 23:19:06.828 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:19:06.828 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:19:06.828 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 23:19:07.018 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP 1426
17-03-17 23:19:07.018 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:19:07.018 -07 000000610 INF: FPGA: 'CAMDBLSNAP 472 472 227 227 36679 150' command took 2 ms to send, 1432 ms to get response, and 1437 ms overall
17-03-17 23:19:07.018 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:19:07.018 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.5185546875, Z-Position -0.167104464827439. ------
17-03-17 23:19:07.018 -07 000000459 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17357 mm
17-03-17 23:19:07.018 -07 000000459 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:19:07.018 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:19:07.028 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:19:07.028 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:19:07.028 -07 000000448 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 23:19:07.028 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 37917, sync = True, waitForSettling = False)
17-03-17 23:19:07.028 -07 000000448 INF: Y Motor: Moving to 72.3626 mm, started at 71.5186 mm, delta = 0.8441 mm
17-03-17 23:19:07.028 -07 000000627 INF: Z Motor: Moving to -0.173573 mm, started at -0.167104 mm, distance = -6.47 um
17-03-17 23:19:07.028 -07 000000551 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:19:07.038 -07 000000627 INF: FPGA: Xmit ZDACW 37917\n [Z Motor]
17-03-17 23:19:07.038 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 23:19:07.048 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:19:07.048 -07 000000627 INF: FPGA: 'ZDACW 37917' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 23:19:07.048 -07 000000429 INF: FPGA: Recv YRDPOS 146470
17-03-17 23:19:07.058 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 23:19:07.058 -07 000000448 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:19:07.058 -07 000000448 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:19:07.058 -07 000000448 INF: Y Motor: Moving 1350 steps-30
17-03-17 23:19:07.058 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:19:07.058 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:19:07.058 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 73. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1178, R2=1229, Total=2407. Warn if over 250 bubbles per interval.
17-03-17 23:19:07.058 -07 000000462 INF: FPGA: Recv ZDACR 37917
17-03-17 23:19:07.068 -07 000000627 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:19:07.068 -07 000000627 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-17 23:19:07.068 -07 000000448 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:19:07.228 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:19:07.228 -07 000000551 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 197 ms to get response, and 206 ms overall
17-03-17 23:19:07.228 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 405 ms.
17-03-17 23:19:07.228 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 23:19:07.228 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:19:07.228 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 404 ms.
17-03-17 23:19:07.228 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 23:19:07.228 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:19:07.238 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:19:07.238 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 23:19:07.238 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms.
17-03-17 23:19:07.248 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 23:19:07.438 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 23:19:07.438 -07 000000448 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 388 ms overall
17-03-17 23:19:07.488 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:19:07.488 -07 000000382 INF: FPGA: Recv YRDPOS 148171
17-03-17 23:19:07.498 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:19:07.498 -07 000000448 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:19:07.498 -07 000000448 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 23:19:07.498 -07 000000448 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.844 mm, average velocity = 2.175 mm/sec
17-03-17 23:19:08.448 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:19:08.448 -07 000000593 INF: FPGA: Recv YRDPOS 148171
17-03-17 23:19:08.458 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:19:08.458 -07 000000448 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:19:08.478 -07 000000448 INF: Y Motor: After move to 72.362610, error = -0.013489, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:19:08.478 -07 000000448 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:19:08.478 -07 000000448 INF: Y Motor: Moved to 72.3491 after 1456 ms (table move)
17-03-17 23:19:08.488 -07 000000459 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173573 mm (DAC = 37917)
17-03-17 23:19:08.488 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:08.488 -07 000000429 INF: FPGA: Recv ZSGSRD 36311
17-03-17 23:19:08.498 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:19:08.498 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:08.498 -07 000000409 INF: FPGA: Recv ZSGSRD 36314
17-03-17 23:19:08.508 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:08.508 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:08.508 -07 000000462 INF: FPGA: Recv ZSGSRD 36310
17-03-17 23:19:08.518 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:08.518 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:08.518 -07 000000429 INF: FPGA: Recv ZSGSRD 36307
17-03-17 23:19:08.528 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:08.528 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:08.528 -07 000000551 INF: FPGA: Recv ZSGSRD 36307
17-03-17 23:19:08.538 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:08.538 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:08.538 -07 000000409 INF: FPGA: Recv ZSGSRD 36307
17-03-17 23:19:08.548 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:08.548 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:08.548 -07 000000409 INF: FPGA: Recv ZSGSRD 36316
17-03-17 23:19:08.558 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:08.558 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:08.558 -07 000000409 INF: FPGA: Recv ZSGSRD 36307
17-03-17 23:19:08.568 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:08.568 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:08.568 -07 000000409 INF: FPGA: Recv ZSGSRD 36308
17-03-17 23:19:08.578 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:08.578 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:08.578 -07 000000409 INF: FPGA: Recv ZSGSRD 36306
17-03-17 23:19:08.588 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:08.588 -07 000000459 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:19:08.588 -07 000000409 INF: FPGA: Recv ZPIEZORD 32442
17-03-17 23:19:08.598 -07 000000459 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:08.598 -07 000000459 INF: Z Motor: Piezo is near 49.3 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.786 V. Piezo Error = -8.6 V.
17-03-17 23:19:08.598 -07 000000459 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.6 um, Read 10 ADC samples: Avg = 36309 (-172.7 uncal um), Error = 0.9 uncal um, Median = 36308 (-172.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36306 (-172.7 uncal um), Max = 36316 (-172.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 23:19:08.598 -07 000000459 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36309, posNoise = 7, negNoise = 3
17-03-17 23:19:08.598 -07 000000459 INF: Z Motor: After move to -0.173573, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:19:08.598 -07 000000459 INF: Z Motor: Settle wait time = 1457 ms, measure time = 109 ms (allowed 150 ms), total time = 1566 ms
17-03-17 23:19:08.598 -07 000000459 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 23:19:08.648 -07 000000459 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1623 ms
17-03-17 23:19:08.648 -07 000000459 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:19:08.648 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:19:08.648 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:19:08.648 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:19:08.648 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:19:08.648 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:19:08.648 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:19:08.648 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:19:08.648 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:19:08.658 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 23:19:08.658 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:19:08.668 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 23:19:08.668 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 23:19:08.668 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:19:08.718 -07 000000459 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:19:08.918 -07 000000593 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:19:08.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:19:08.918 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:19:08.918 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) start.
17-03-17 23:19:08.948 -07 000000501 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:19:08.958 -07 000000593 INF: FPGA: Recv CAMSNAP
17-03-17 23:19:08.958 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 23:19:09.028 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 23:19:09.028 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:19:09.028 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 23:19:09.028 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 23:19:09.058 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:19:09.058 -07 000000462 INF: Autofocus start
17-03-17 23:19:09.058 -07 000000462 INF: MeasureProfile start
17-03-17 23:19:09.068 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:19:09.068 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 5 ms overall
17-03-17 23:19:09.068 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:19:09.068 -07 000000462 INF: MeasureProfile done
17-03-17 23:19:09.068 -07 000000462 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 23:19:09.068 -07 000000462 INF: Autofocus finished
17-03-17 23:19:09.268 -07 000000459 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:19:09.268 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 23:19:09.278 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34912109375, Z-position -0.173580070666334. ----------
17-03-17 23:19:09.278 -07 000000610 INF: Cycle	74	Tile	16	Exposure Settings		A	472	G	227	T	227	C	472
17-03-17 23:19:09.278 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36397, sync = True, waitForSettling = True)
17-03-17 23:19:09.278 -07 000000610 INF: Z Motor: Moving to -0.166615 mm, started at -0.173580 mm, distance = 6.97 um
17-03-17 23:19:09.278 -07 000000610 INF: FPGA: Xmit ZDACW 36397\n [Z Motor]
17-03-17 23:19:09.278 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 23:19:09.288 -07 000000610 INF: FPGA: 'ZDACW 36397' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:19:09.288 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:19:09.288 -07 000000459 INF: FPGA: Recv ZDACR 36397
17-03-17 23:19:09.298 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:09.298 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:19:09.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:09.448 -07 000000593 INF: FPGA: Recv ZSGSRD 35229
17-03-17 23:19:09.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:09.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:09.458 -07 000000382 INF: FPGA: Recv ZSGSRD 35222
17-03-17 23:19:09.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:09.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:09.468 -07 000000459 INF: FPGA: Recv ZSGSRD 35225
17-03-17 23:19:09.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:09.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:09.478 -07 000000448 INF: FPGA: Recv ZSGSRD 35223
17-03-17 23:19:09.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:09.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:09.488 -07 000000382 INF: FPGA: Recv ZSGSRD 35223
17-03-17 23:19:09.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:09.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:09.498 -07 000000593 INF: FPGA: Recv ZSGSRD 35233
17-03-17 23:19:09.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:09.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:09.508 -07 000000382 INF: FPGA: Recv ZSGSRD 35229
17-03-17 23:19:09.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:09.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:09.518 -07 000000593 INF: FPGA: Recv ZSGSRD 35226
17-03-17 23:19:09.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:09.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:09.528 -07 000000459 INF: FPGA: Recv ZSGSRD 35226
17-03-17 23:19:09.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:09.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:09.538 -07 000000382 INF: FPGA: Recv ZSGSRD 35222
17-03-17 23:19:09.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:09.548 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:19:09.548 -07 000000459 INF: FPGA: Recv ZPIEZORD 31026
17-03-17 23:19:09.558 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:09.558 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.554 V. Piezo Error = -9.3 V.
17-03-17 23:19:09.558 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.6 um, Read 10 ADC samples: Avg = 35226 (-165.8 uncal um), Error = 0.9 uncal um, Median = 35226 (-165.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35222 (-165.7 uncal um), Max = 35233 (-165.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:19:09.558 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35226, posNoise = 7, negNoise = 4
17-03-17 23:19:09.558 -07 000000610 INF: Z Motor: After move to -0.166615, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:19:09.558 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 23:19:09.558 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:19:09.558 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:19:09.558 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:19:09.558 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:19:09.558 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:19:09.558 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:19:09.558 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:19:09.558 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:19:09.558 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:19:09.558 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:19:09.558 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:19:09.558 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:19:09.568 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:19:09.568 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:19:09.568 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 23:19:09.568 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:19:09.578 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 23:19:09.578 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:19:09.578 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 23:19:09.578 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 23:19:09.578 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 472 472 227 227 36574 150\n [Camera]
17-03-17 23:19:09.778 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:19:10.258 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 664
17-03-17 23:19:10.258 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 664
17-03-17 23:19:10.258 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:19:10.258 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:19:10.258 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 23:19:10.258 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 664
17-03-17 23:19:10.258 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 664
17-03-17 23:19:10.258 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:19:10.258 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:19:10.258 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 23:19:10.448 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36574 857
17-03-17 23:19:10.598 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1007
17-03-17 23:19:10.628 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 23:19:10.628 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 23:19:10.628 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:19:10.638 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 23:19:10.638 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 23:19:10.638 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:19:10.638 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:19:10.638 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:19:10.638 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 23:19:10.648 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 23:19:10.828 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1234
17-03-17 23:19:10.828 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1234
17-03-17 23:19:10.828 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:19:10.828 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:19:10.828 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 23:19:10.828 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1234
17-03-17 23:19:10.828 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1234
17-03-17 23:19:10.828 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:19:10.828 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:19:10.828 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 23:19:11.018 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP 1427
17-03-17 23:19:11.018 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:19:11.018 -07 000000610 INF: FPGA: 'CAMDBLSNAP 472 472 227 227 36574 150' command took 2 ms to send, 1433 ms to get response, and 1437 ms overall
17-03-17 23:19:11.018 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:19:11.018 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.34912109375, Z-Position -0.166622648916806. ------
17-03-17 23:19:11.018 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:19:11.018 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17317 mm
17-03-17 23:19:11.018 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:19:11.028 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:19:11.028 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:19:11.028 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:19:11.028 -07 000000593 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 23:19:11.028 -07 000000593 INF: Y Motor: Moving to 73.1926 mm, started at 72.3491 mm, delta = 0.8435 mm
17-03-17 23:19:11.028 -07 000000478 INF: Z Motor: Entering MoveAbsStepped (DAC = 37828, sync = True, waitForSettling = False)
17-03-17 23:19:11.028 -07 000000478 INF: Z Motor: Moving to -0.173165 mm, started at -0.166623 mm, distance = -6.54 um
17-03-17 23:19:11.038 -07 000000478 INF: FPGA: Xmit ZDACW 37828\n [Z Motor]
17-03-17 23:19:11.038 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 23:19:11.048 -07 000000478 INF: FPGA: 'ZDACW 37828' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 23:19:11.048 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:19:11.048 -07 000000459 INF: FPGA: Recv YRDPOS 148172
17-03-17 23:19:11.058 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 23:19:11.058 -07 000000478 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:19:11.058 -07 000000593 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:19:11.058 -07 000000459 INF: FPGA: Recv ZDACR 37828
17-03-17 23:19:11.058 -07 000000593 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:19:11.058 -07 000000593 INF: Y Motor: Moving 1349 steps-28
17-03-17 23:19:11.068 -07 000000478 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:19:11.068 -07 000000593 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:19:11.068 -07 000000478 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet))
17-03-17 23:19:11.208 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 23:19:11.208 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 23:19:11.208 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:19:11.218 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:19:11.218 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 23:19:11.218 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 23:19:11.218 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:19:11.218 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 23:19:11.228 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 23:19:11.228 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 23:19:11.228 -07 000000551 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:19:11.228 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 23:19:11.438 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 23:19:11.438 -07 000000593 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-17 23:19:11.458 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 74, FrontChillerTemperature: 4.001704,
17-03-17 23:19:11.498 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:19:11.498 -07 000000618 INF: FPGA: Recv YRDPOS 149863
17-03-17 23:19:11.508 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 23:19:11.508 -07 000000593 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:19:11.508 -07 000000593 INF: Y Motor: Position error before settling (table move) = -35 encoder counts (-0.017 mm)
17-03-17 23:19:11.508 -07 000000593 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.843 mm, average velocity = 2.197 mm/sec
17-03-17 23:19:12.058 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:19:12.058 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 73. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1178, R2=1229, Total=2407. Warn if over 250 bubbles per interval.
17-03-17 23:19:12.458 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:19:12.458 -07 000000382 INF: FPGA: Recv YRDPOS 149863
17-03-17 23:19:12.468 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:19:12.468 -07 000000593 INF: Y Motor: Encoder = 149863 = motor step 117080.5 = 73.1753 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:19:12.488 -07 000000593 INF: Y Motor: After move to 73.192604, error = -0.017311, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:19:12.488 -07 000000593 INF: Y Motor: Position error after settling (table move) = -35 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:19:12.488 -07 000000593 INF: Y Motor: Moved to 73.1753 after 1462 ms (table move)
17-03-17 23:19:12.488 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173165 mm (DAC = 37828)
17-03-17 23:19:12.488 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:12.498 -07 000000409 INF: FPGA: Recv ZSGSRD 36249
17-03-17 23:19:12.498 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 23:19:12.498 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:12.498 -07 000000409 INF: FPGA: Recv ZSGSRD 36247
17-03-17 23:19:12.508 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:19:12.508 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:12.508 -07 000000409 INF: FPGA: Recv ZSGSRD 36252
17-03-17 23:19:12.518 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:12.518 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:12.518 -07 000000409 INF: FPGA: Recv ZSGSRD 36253
17-03-17 23:19:12.528 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:12.528 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:12.528 -07 000000409 INF: FPGA: Recv ZSGSRD 36247
17-03-17 23:19:12.538 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:12.538 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:12.538 -07 000000409 INF: FPGA: Recv ZSGSRD 36241
17-03-17 23:19:12.548 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:12.548 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:12.548 -07 000000409 INF: FPGA: Recv ZSGSRD 36247
17-03-17 23:19:12.558 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:12.558 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:12.558 -07 000000409 INF: FPGA: Recv ZSGSRD 36242
17-03-17 23:19:12.568 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:12.568 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:12.568 -07 000000409 INF: FPGA: Recv ZSGSRD 36240
17-03-17 23:19:12.578 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:12.578 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:12.578 -07 000000409 INF: FPGA: Recv ZSGSRD 36249
17-03-17 23:19:12.588 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:12.588 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:19:12.588 -07 000000409 INF: FPGA: Recv ZPIEZORD 32352
17-03-17 23:19:12.598 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:12.598 -07 000000501 INF: Z Motor: Piezo is near 49.1 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.772 V. Piezo Error = -8.6 V.
17-03-17 23:19:12.598 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.2 um, Read 10 ADC samples: Avg = 36247 (-172.3 uncal um), Error = 0.9 uncal um, Median = 36247 (-172.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36240 (-172.3 uncal um), Max = 36253 (-172.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 23:19:12.598 -07 000000501 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36247, posNoise = 6, negNoise = 7
17-03-17 23:19:12.598 -07 000000501 INF: Z Motor: After move to -0.173165, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:19:12.598 -07 000000501 INF: Z Motor: Settle wait time = 1465 ms, measure time = 103 ms (allowed 150 ms), total time = 1568 ms
17-03-17 23:19:12.598 -07 000000501 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 23:19:12.648 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1622 ms
17-03-17 23:19:12.648 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:19:12.648 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:19:12.648 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:19:12.648 -07 000000409 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:19:12.648 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:19:12.648 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:19:12.648 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:19:12.648 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:19:12.648 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:19:12.648 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:19:12.658 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:19:12.668 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 23:19:12.668 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 23:19:12.668 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:19:12.718 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:19:12.918 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:19:12.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:19:12.918 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:19:12.918 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2253754584, 0x0, 559484976) start.
17-03-17 23:19:12.958 -07 000000409 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:19:12.958 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 23:19:12.958 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 23:19:13.028 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2253754584, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 23:19:13.028 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:19:13.038 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 23:19:13.038 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 23:19:13.058 -07 000000501 INF: Autofocus start
17-03-17 23:19:13.058 -07 000000501 INF: MeasureProfile start
17-03-17 23:19:13.058 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:19:13.058 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:19:13.068 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:19:13.068 -07 000000459 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:19:13.068 -07 000000501 INF: MeasureProfile done
17-03-17 23:19:13.068 -07 000000501 INF: X=0  Z correction [um]=-0.0713522
17-03-17 23:19:13.068 -07 000000501 INF: Autofocus finished
17-03-17 23:19:13.268 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:19:13.268 -07 000000459 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:19:13.268 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17529296875, Z-position -0.173181769513544. ----------
17-03-17 23:19:13.268 -07 000000610 INF: Cycle	74	Tile	17	Exposure Settings		A	472	G	227	T	227	C	472
17-03-17 23:19:13.278 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36325, sync = True, waitForSettling = True)
17-03-17 23:19:13.278 -07 000000610 INF: Z Motor: Moving to -0.166285 mm, started at -0.173182 mm, distance = 6.90 um
17-03-17 23:19:13.278 -07 000000610 INF: FPGA: Xmit ZDACW 36325\n [Z Motor]
17-03-17 23:19:13.278 -07 000000409 INF: FPGA: Recv ZDACW
17-03-17 23:19:13.288 -07 000000610 INF: FPGA: 'ZDACW 36325' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:13.288 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:19:13.288 -07 000000551 INF: FPGA: Recv ZDACR 36325
17-03-17 23:19:13.298 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:13.298 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:19:13.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:13.448 -07 000000459 INF: FPGA: Recv ZSGSRD 35175
17-03-17 23:19:13.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:19:13.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:13.458 -07 000000459 INF: FPGA: Recv ZSGSRD 35180
17-03-17 23:19:13.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:13.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:13.468 -07 000000409 INF: FPGA: Recv ZSGSRD 35178
17-03-17 23:19:13.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:13.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:13.478 -07 000000409 INF: FPGA: Recv ZSGSRD 35175
17-03-17 23:19:13.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:13.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:13.488 -07 000000478 INF: FPGA: Recv ZSGSRD 35171
17-03-17 23:19:13.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:13.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:13.498 -07 000000478 INF: FPGA: Recv ZSGSRD 35175
17-03-17 23:19:13.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:13.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:13.508 -07 000000478 INF: FPGA: Recv ZSGSRD 35178
17-03-17 23:19:13.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:13.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:13.518 -07 000000618 INF: FPGA: Recv ZSGSRD 35178
17-03-17 23:19:13.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:13.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:13.528 -07 000000501 INF: FPGA: Recv ZSGSRD 35171
17-03-17 23:19:13.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:13.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:13.538 -07 000000501 INF: FPGA: Recv ZSGSRD 35177
17-03-17 23:19:13.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:13.548 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:19:13.548 -07 000000501 INF: FPGA: Recv ZPIEZORD 30968
17-03-17 23:19:13.558 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:13.558 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.543 V. Piezo Error = -9.3 V.
17-03-17 23:19:13.558 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.3 um, Read 10 ADC samples: Avg = 35176 (-165.4 uncal um), Error = 0.8 uncal um, Median = 35176 (-165.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35171 (-165.4 uncal um), Max = 35180 (-165.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:19:13.558 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35176, posNoise = 4, negNoise = 5
17-03-17 23:19:13.558 -07 000000610 INF: Z Motor: After move to -0.166285, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:19:13.558 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 23:19:13.558 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:19:13.558 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:19:13.558 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:19:13.558 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:19:13.558 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:19:13.558 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:19:13.558 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:19:13.558 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:19:13.558 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:19:13.558 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:19:13.558 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:19:13.558 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:19:13.558 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 23:19:13.558 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:19:13.558 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:19:13.558 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:19:13.568 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 23:19:13.568 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 23:19:13.568 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 23:19:13.568 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 23:19:13.578 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 472 472 227 227 36502 150\n [Camera]
17-03-17 23:19:13.778 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:19:14.248 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 664
17-03-17 23:19:14.248 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 664
17-03-17 23:19:14.248 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:19:14.248 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:19:14.248 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-17 23:19:14.248 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 664
17-03-17 23:19:14.248 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 664
17-03-17 23:19:14.248 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:19:14.248 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:19:14.248 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-17 23:19:14.438 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36502 857
17-03-17 23:19:14.588 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1008
17-03-17 23:19:14.628 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 23:19:14.628 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 23:19:14.628 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:19:14.628 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 23:19:14.628 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 23:19:14.628 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:19:14.628 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:19:14.628 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:19:14.628 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 23:19:14.638 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 23:19:14.818 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1234
17-03-17 23:19:14.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1234
17-03-17 23:19:14.818 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:19:14.818 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:19:14.818 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-17 23:19:14.818 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1234
17-03-17 23:19:14.818 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1234
17-03-17 23:19:14.818 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:19:14.958 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:19:14.968 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 23:19:15.008 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP 1427
17-03-17 23:19:15.008 -07 000000459 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:19:15.008 -07 000000610 INF: FPGA: 'CAMDBLSNAP 472 472 227 227 36502 150' command took 2 ms to send, 1425 ms to get response, and 1434 ms overall
17-03-17 23:19:15.008 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:19:15.008 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17529296875, Z-Position -0.166301438309718. ------
17-03-17 23:19:15.018 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:19:15.018 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17271 mm
17-03-17 23:19:15.018 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:19:15.018 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 23:19:15.018 -07 000000541 INF: Y Motor: Moving to 74.0226 mm, started at 73.1753 mm, delta = 0.8473 mm
17-03-17 23:19:15.018 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:19:15.018 -07 000000429 INF: Z Motor: Entering MoveAbsStepped (DAC = 37728, sync = True, waitForSettling = False)
17-03-17 23:19:15.018 -07 000000429 INF: Z Motor: Moving to -0.172708 mm, started at -0.166301 mm, distance = -6.41 um
17-03-17 23:19:15.028 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:19:15.028 -07 000000429 INF: FPGA: Xmit ZDACW 37728\n [Z Motor]
17-03-17 23:19:15.028 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 23:19:15.038 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:19:15.038 -07 000000429 INF: FPGA: 'ZDACW 37728' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 23:19:15.038 -07 000000501 INF: FPGA: Recv YRDPOS 149864
17-03-17 23:19:15.048 -07 000000448 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:19:15.048 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 23:19:15.048 -07 000000541 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:19:15.048 -07 000000541 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:19:15.048 -07 000000541 INF: Y Motor: Moving 1355 steps-35
17-03-17 23:19:15.058 -07 000000429 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:19:15.058 -07 000000551 INF: FPGA: Recv ZDACR 37728
17-03-17 23:19:15.068 -07 000000429 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:19:15.068 -07 000000429 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-17 23:19:15.068 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:19:15.228 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 412 ms.
17-03-17 23:19:15.228 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 23:19:15.228 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:19:15.238 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 23:19:15.238 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 419 ms.
17-03-17 23:19:15.248 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:19:15.248 -07 000000448 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 23:19:15.358 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 23:19:15.358 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 23:19:15.358 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:19:15.358 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 23:19:15.368 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 543 ms.
17-03-17 23:19:15.438 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-17 23:19:15.438 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-17 23:19:15.478 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:19:15.478 -07 000000459 INF: FPGA: Recv YRDPOS 151568
17-03-17 23:19:15.488 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:19:15.488 -07 000000541 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:19:15.488 -07 000000541 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 23:19:15.488 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.847 mm, average velocity = 2.162 mm/sec
17-03-17 23:19:16.438 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:19:16.438 -07 000000576 INF: FPGA: Recv YRDPOS 151568
17-03-17 23:19:16.448 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:16.448 -07 000000541 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:19:16.458 -07 000000541 INF: Y Motor: After move to 74.022606, error = -0.014793, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:19:16.458 -07 000000541 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:19:16.458 -07 000000541 INF: Y Motor: Moved to 74.0078 after 1444 ms (table move)
17-03-17 23:19:16.468 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172708 mm (DAC = 37728)
17-03-17 23:19:16.468 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:16.468 -07 000000541 INF: FPGA: Recv ZSGSRD 36181
17-03-17 23:19:16.478 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:19:16.478 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:16.478 -07 000000541 INF: FPGA: Recv ZSGSRD 36179
17-03-17 23:19:16.488 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:16.488 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:16.488 -07 000000541 INF: FPGA: Recv ZSGSRD 36172
17-03-17 23:19:16.498 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:16.508 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:16.508 -07 000000618 INF: FPGA: Recv ZSGSRD 36175
17-03-17 23:19:16.518 -07 000000561 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:19:16.518 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:16.518 -07 000000618 INF: FPGA: Recv ZSGSRD 36175
17-03-17 23:19:16.528 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:16.528 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:16.528 -07 000000618 INF: FPGA: Recv ZSGSRD 36168
17-03-17 23:19:16.538 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:16.538 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:16.538 -07 000000618 INF: FPGA: Recv ZSGSRD 36167
17-03-17 23:19:16.548 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:16.548 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:16.548 -07 000000551 INF: FPGA: Recv ZSGSRD 36179
17-03-17 23:19:16.558 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:16.558 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:16.558 -07 000000551 INF: FPGA: Recv ZSGSRD 36177
17-03-17 23:19:16.568 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:16.568 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:16.568 -07 000000551 INF: FPGA: Recv ZSGSRD 36181
17-03-17 23:19:16.578 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:16.578 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:19:16.578 -07 000000551 INF: FPGA: Recv ZPIEZORD 32309
17-03-17 23:19:16.588 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:16.588 -07 000000561 INF: Z Motor: Piezo is near 49.0 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.757 V. Piezo Error = -8.5 V.
17-03-17 23:19:16.588 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.7 um, Read 10 ADC samples: Avg = 36175 (-171.8 uncal um), Error = 0.9 uncal um, Median = 36176 (-171.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36167 (-171.8 uncal um), Max = 36181 (-171.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 23:19:16.588 -07 000000561 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36175, posNoise = 6, negNoise = 8
17-03-17 23:19:16.588 -07 000000561 INF: Z Motor: After move to -0.172708, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:19:16.588 -07 000000561 INF: Z Motor: Settle wait time = 1446 ms, measure time = 118 ms (allowed 150 ms), total time = 1564 ms
17-03-17 23:19:16.588 -07 000000561 INF: Z Motor: Waiting extra 32 ms after reading position to reach expected total of 150 ms
17-03-17 23:19:16.628 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-17 23:19:16.628 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:19:16.628 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:19:16.628 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:19:16.628 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:19:16.628 -07 000000409 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:19:16.628 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:19:16.628 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:19:16.628 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 23:19:16.628 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:19:16.638 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:19:16.638 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:19:16.648 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 23:19:16.648 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 23:19:16.648 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:19:16.698 -07 000000551 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:19:16.818 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 74, FrontChillerTemperature: 3.978563,
17-03-17 23:19:16.898 -07 000000409 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:19:16.898 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:19:16.898 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:19:16.898 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-17 23:19:16.938 -07 000000459 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:19:16.938 -07 000000593 INF: FPGA: Recv CAMSNAP
17-03-17 23:19:16.938 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 23:19:17.018 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 121 ms.
17-03-17 23:19:17.018 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:19:17.018 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:19:17.018 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 124 ms.
17-03-17 23:19:17.038 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:19:17.038 -07 000000409 INF: Autofocus start
17-03-17 23:19:17.038 -07 000000409 INF: MeasureProfile start
17-03-17 23:19:17.038 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:19:17.048 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:19:17.048 -07 000000459 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:19:17.048 -07 000000409 INF: MeasureProfile done
17-03-17 23:19:17.048 -07 000000409 INF: X=32  Z correction [um]=0.09220707
17-03-17 23:19:17.048 -07 000000409 INF: Autofocus finished
17-03-17 23:19:17.058 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:19:17.058 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 73. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1178, R2=1229, Total=2407. Warn if over 250 bubbles per interval.
17-03-17 23:19:17.248 -07 000000551 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:19:17.248 -07 000000459 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:19:17.248 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0078125, Z-position -0.172719226239338. ----------
17-03-17 23:19:17.248 -07 000000610 INF: Cycle	74	Tile	18	Exposure Settings		A	472	G	227	T	227	C	472
17-03-17 23:19:17.258 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36261, sync = True, waitForSettling = True)
17-03-17 23:19:17.258 -07 000000610 INF: Z Motor: Moving to -0.165992 mm, started at -0.172719 mm, distance = 6.73 um
17-03-17 23:19:17.258 -07 000000610 INF: FPGA: Xmit ZDACW 36261\n [Z Motor]
17-03-17 23:19:17.258 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 23:19:17.268 -07 000000610 INF: FPGA: 'ZDACW 36261' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:19:17.268 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:19:17.268 -07 000000501 INF: FPGA: Recv ZDACR 36261
17-03-17 23:19:17.278 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:17.278 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:19:17.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:17.428 -07 000000478 INF: FPGA: Recv ZSGSRD 35133
17-03-17 23:19:17.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:17.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:17.438 -07 000000501 INF: FPGA: Recv ZSGSRD 35131
17-03-17 23:19:17.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:17.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:17.448 -07 000000478 INF: FPGA: Recv ZSGSRD 35128
17-03-17 23:19:17.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:17.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:17.458 -07 000000429 INF: FPGA: Recv ZSGSRD 35130
17-03-17 23:19:17.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:17.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:17.468 -07 000000501 INF: FPGA: Recv ZSGSRD 35131
17-03-17 23:19:17.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:17.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:17.478 -07 000000501 INF: FPGA: Recv ZSGSRD 35134
17-03-17 23:19:17.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:17.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:17.488 -07 000000593 INF: FPGA: Recv ZSGSRD 35130
17-03-17 23:19:17.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:17.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:17.498 -07 000000593 INF: FPGA: Recv ZSGSRD 35129
17-03-17 23:19:17.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:17.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:17.508 -07 000000593 INF: FPGA: Recv ZSGSRD 35129
17-03-17 23:19:17.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:17.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:17.518 -07 000000409 INF: FPGA: Recv ZSGSRD 35127
17-03-17 23:19:17.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:17.528 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:19:17.528 -07 000000448 INF: FPGA: Recv ZPIEZORD 30905
17-03-17 23:19:17.538 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:17.538 -07 000000610 INF: Z Motor: Piezo is near 46.0 V (nominally 0 to 100 V), expect near 55.3 V, since DAC is at 5.533 V. Piezo Error = -9.3 V.
17-03-17 23:19:17.538 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.0 um, Read 10 ADC samples: Avg = 35130 (-165.1 uncal um), Error = 0.9 uncal um, Median = 35130 (-165.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35127 (-165.1 uncal um), Max = 35134 (-165.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 23:19:17.538 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35130, posNoise = 4, negNoise = 3
17-03-17 23:19:17.538 -07 000000610 INF: Z Motor: After move to -0.165992, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:19:17.538 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 23:19:17.538 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:19:17.538 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:19:17.538 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:19:17.538 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:19:17.538 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:19:17.538 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:19:17.538 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:19:17.538 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:19:17.538 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:19:17.538 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:19:17.548 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:19:17.548 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:19:17.548 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 23:19:17.548 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:19:17.548 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 23:19:17.548 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:19:17.558 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 23:19:17.558 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 23:19:17.558 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 23:19:17.558 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:19:17.558 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 472 472 227 227 36437 150\n [Camera]
17-03-17 23:19:17.758 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:19:18.228 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 664
17-03-17 23:19:18.228 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 664
17-03-17 23:19:18.228 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:19:18.228 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 664
17-03-17 23:19:18.228 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 664
17-03-17 23:19:18.238 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:19:18.258 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:19:18.258 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 23:19:18.258 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:19:18.258 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 23:19:18.418 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36437 857
17-03-17 23:19:18.568 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1007
17-03-17 23:19:18.628 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 23:19:18.628 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 23:19:18.628 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:19:18.628 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 374 ms.
17-03-17 23:19:18.628 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 23:19:18.628 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:19:18.638 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 23:19:18.638 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:19:18.638 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 23:19:18.638 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 23:19:18.798 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1234
17-03-17 23:19:18.798 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1234
17-03-17 23:19:18.798 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:19:18.798 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1234
17-03-17 23:19:18.798 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1234
17-03-17 23:19:18.808 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:19:18.918 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:19:18.918 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 23:19:18.918 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:19:18.918 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 23:19:18.988 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1427
17-03-17 23:19:18.988 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:19:18.988 -07 000000610 INF: FPGA: 'CAMDBLSNAP 472 472 227 227 36437 150' command took 2 ms to send, 1428 ms to get response, and 1434 ms overall
17-03-17 23:19:18.998 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:19:18.998 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0078125, Z-Position -0.166005924551197. ------
17-03-17 23:19:18.998 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17235 mm
17-03-17 23:19:18.998 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:19:18.998 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:19:18.998 -07 000000478 INF: Z Motor: Entering MoveAbsStepped (DAC = 37650, sync = True, waitForSettling = False)
17-03-17 23:19:18.998 -07 000000478 INF: Z Motor: Moving to -0.172351 mm, started at -0.166006 mm, distance = -6.34 um
17-03-17 23:19:18.998 -07 000000429 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 23:19:18.998 -07 000000429 INF: Y Motor: Moving to 74.8526 mm, started at 74.0078 mm, delta = 0.8448 mm
17-03-17 23:19:18.998 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:19:19.008 -07 000000478 INF: FPGA: Xmit ZDACW 37650\n [Z Motor]
17-03-17 23:19:19.008 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:19:19.008 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 23:19:19.018 -07 000000478 INF: FPGA: 'ZDACW 37650' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 23:19:19.018 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:19:19.018 -07 000000459 INF: FPGA: Recv YRDPOS 151568
17-03-17 23:19:19.028 -07 000000541 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:19:19.028 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 23:19:19.028 -07 000000429 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:19:19.028 -07 000000429 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:19:19.028 -07 000000429 INF: Y Motor: Moving 1352 steps-30
17-03-17 23:19:19.038 -07 000000478 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:19:19.038 -07 000000576 INF: FPGA: Recv ZDACR 37650
17-03-17 23:19:19.048 -07 000000478 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:19:19.048 -07 000000478 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-17 23:19:19.048 -07 000000429 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:19:19.228 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:19:19.228 -07 000000541 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 23:19:19.298 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 23:19:19.298 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 23:19:19.298 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:19:19.308 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 23:19:19.308 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 23:19:19.308 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:19:19.308 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:19:19.308 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:19:19.308 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 507 ms.
17-03-17 23:19:19.318 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 509 ms.
17-03-17 23:19:19.428 -07 000000409 INF: FPGA: Recv YMVTILE
17-03-17 23:19:19.428 -07 000000429 INF: FPGA: 'YMVTILE 1327' command took 2 ms to send, 370 ms to get response, and 399 ms overall
17-03-17 23:19:19.448 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:19:19.448 -07 000000448 INF: FPGA: Recv YRDPOS 153254
17-03-17 23:19:19.458 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:19:19.458 -07 000000429 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:19:19.458 -07 000000429 INF: Y Motor: Position error before settling (table move) = -44 encoder counts (-0.021 mm)
17-03-17 23:19:19.458 -07 000000429 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.845 mm, average velocity = 2.117 mm/sec
17-03-17 23:19:20.408 -07 000000429 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:19:20.408 -07 000000459 INF: FPGA: Recv YRDPOS 153255
17-03-17 23:19:20.418 -07 000000429 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:19:20.418 -07 000000429 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:19:20.428 -07 000000429 INF: Y Motor: After move to 74.852608, error = -0.021065, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:19:20.428 -07 000000429 INF: Y Motor: Position error after settling (table move) = -43 encoder counts (-0.021 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 23:19:20.428 -07 000000429 INF: Y Motor: Moved to 74.8315 after 1430 ms (table move)
17-03-17 23:19:20.438 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172351 mm (DAC = 37650)
17-03-17 23:19:20.438 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:20.438 -07 000000576 INF: FPGA: Recv ZSGSRD 36119
17-03-17 23:19:20.448 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:20.448 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:20.448 -07 000000541 INF: FPGA: Recv ZSGSRD 36120
17-03-17 23:19:20.458 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:20.458 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:20.458 -07 000000576 INF: FPGA: Recv ZSGSRD 36117
17-03-17 23:19:20.468 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:20.468 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:20.468 -07 000000576 INF: FPGA: Recv ZSGSRD 36125
17-03-17 23:19:20.478 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:20.478 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:20.478 -07 000000576 INF: FPGA: Recv ZSGSRD 36116
17-03-17 23:19:20.488 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:20.488 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:20.488 -07 000000576 INF: FPGA: Recv ZSGSRD 36118
17-03-17 23:19:20.498 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:20.498 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:20.498 -07 000000576 INF: FPGA: Recv ZSGSRD 36122
17-03-17 23:19:20.508 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:20.508 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:20.508 -07 000000576 INF: FPGA: Recv ZSGSRD 36114
17-03-17 23:19:20.518 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:20.518 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:20.518 -07 000000576 INF: FPGA: Recv ZSGSRD 36122
17-03-17 23:19:20.528 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:20.528 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:20.528 -07 000000448 INF: FPGA: Recv ZSGSRD 36116
17-03-17 23:19:20.538 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:19:20.538 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:19:20.538 -07 000000448 INF: FPGA: Recv ZPIEZORD 32207
17-03-17 23:19:20.548 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:20.548 -07 000000501 INF: Z Motor: Piezo is near 48.8 V (nominally 0 to 100 V), expect near 57.5 V, since DAC is at 5.745 V. Piezo Error = -8.6 V.
17-03-17 23:19:20.548 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.4 um, Read 10 ADC samples: Avg = 36119 (-171.5 uncal um), Error = 0.9 uncal um, Median = 36118 (-171.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36114 (-171.4 uncal um), Max = 36125 (-171.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:19:20.548 -07 000000501 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36119, posNoise = 6, negNoise = 5
17-03-17 23:19:20.548 -07 000000501 INF: Z Motor: After move to -0.172351, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:19:20.548 -07 000000501 INF: Z Motor: Settle wait time = 1433 ms, measure time = 110 ms (allowed 150 ms), total time = 1543 ms
17-03-17 23:19:20.548 -07 000000501 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 23:19:20.588 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1585 ms
17-03-17 23:19:20.588 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:19:20.588 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:19:20.588 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:19:20.588 -07 000000409 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:19:20.588 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:19:20.588 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:19:20.588 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:19:20.588 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 23:19:20.588 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:19:20.598 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:19:20.598 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:19:20.608 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 23:19:20.608 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 23:19:20.608 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:19:20.658 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:19:20.858 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:19:20.858 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:19:20.858 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:19:20.858 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) start.
17-03-17 23:19:20.898 -07 000000593 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:19:20.898 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-17 23:19:20.898 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 23:19:20.968 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656674232, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 23:19:20.968 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:19:20.978 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:19:20.978 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 23:19:20.998 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:19:20.998 -07 000000409 INF: Autofocus start
17-03-17 23:19:20.998 -07 000000409 INF: MeasureProfile start
17-03-17 23:19:20.998 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:19:21.008 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:19:21.008 -07 000000551 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:19:21.008 -07 000000409 INF: MeasureProfile done
17-03-17 23:19:21.008 -07 000000409 INF: X=32  Z correction [um]=0.09220707
17-03-17 23:19:21.008 -07 000000409 INF: Autofocus finished
17-03-17 23:19:21.208 -07 000000459 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:19:21.208 -07 000000551 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:19:21.208 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83154296875, Z-position -0.172359470359399. ----------
17-03-17 23:19:21.208 -07 000000610 INF: Cycle	74	Tile	19	Exposure Settings		A	472	G	227	T	227	C	472
17-03-17 23:19:21.218 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36183, sync = True, waitForSettling = True)
17-03-17 23:19:21.218 -07 000000610 INF: Z Motor: Moving to -0.165635 mm, started at -0.172359 mm, distance = 6.72 um
17-03-17 23:19:21.218 -07 000000610 INF: FPGA: Xmit ZDACW 36183\n [Z Motor]
17-03-17 23:19:21.218 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 23:19:21.228 -07 000000610 INF: FPGA: 'ZDACW 36183' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:19:21.228 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:19:21.228 -07 000000478 INF: FPGA: Recv ZDACR 36183
17-03-17 23:19:21.238 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:21.238 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:19:21.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:21.388 -07 000000478 INF: FPGA: Recv ZSGSRD 35076
17-03-17 23:19:21.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:19:21.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:21.398 -07 000000478 INF: FPGA: Recv ZSGSRD 35079
17-03-17 23:19:21.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:21.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:21.408 -07 000000478 INF: FPGA: Recv ZSGSRD 35071
17-03-17 23:19:21.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:21.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:21.418 -07 000000478 INF: FPGA: Recv ZSGSRD 35074
17-03-17 23:19:21.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:21.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:21.428 -07 000000478 INF: FPGA: Recv ZSGSRD 35071
17-03-17 23:19:21.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:21.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:21.438 -07 000000576 INF: FPGA: Recv ZSGSRD 35072
17-03-17 23:19:21.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:21.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:21.448 -07 000000501 INF: FPGA: Recv ZSGSRD 35073
17-03-17 23:19:21.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:21.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:21.458 -07 000000501 INF: FPGA: Recv ZSGSRD 35073
17-03-17 23:19:21.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:21.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:21.468 -07 000000501 INF: FPGA: Recv ZSGSRD 35075
17-03-17 23:19:21.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:21.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:21.478 -07 000000501 INF: FPGA: Recv ZSGSRD 35076
17-03-17 23:19:21.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:21.488 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:19:21.488 -07 000000501 INF: FPGA: Recv ZPIEZORD 30808
17-03-17 23:19:21.498 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:21.498 -07 000000610 INF: Z Motor: Piezo is near 45.8 V (nominally 0 to 100 V), expect near 55.2 V, since DAC is at 5.521 V. Piezo Error = -9.4 V.
17-03-17 23:19:21.498 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.6 um, Read 10 ADC samples: Avg = 35074 (-164.8 uncal um), Error = 0.9 uncal um, Median = 35074 (-164.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35071 (-164.8 uncal um), Max = 35079 (-164.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 23:19:21.498 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35074, posNoise = 5, negNoise = 3
17-03-17 23:19:21.498 -07 000000610 INF: Z Motor: After move to -0.165635, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:19:21.498 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 23:19:21.498 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:19:21.498 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:19:21.498 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:19:21.498 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:19:21.498 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:19:21.498 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:19:21.498 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:19:21.498 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:19:21.498 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:19:21.498 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:19:21.498 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:19:21.498 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:19:21.508 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 23:19:21.508 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:19:21.508 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:19:21.508 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:19:21.518 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 23:19:21.518 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 23:19:21.518 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 23:19:21.518 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 23:19:21.518 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 472 472 227 227 36360 150\n [Camera]
17-03-17 23:19:21.718 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:19:22.058 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:19:22.058 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 73. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1178, R2=1229, Total=2407. Warn if over 250 bubbles per interval.
17-03-17 23:19:22.178 -07 000000409 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 74, FrontChillerTemperature: 4.028963,
17-03-17 23:19:22.188 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 664
17-03-17 23:19:22.188 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 664
17-03-17 23:19:22.188 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:19:22.188 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:19:22.188 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 23:19:22.188 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 664
17-03-17 23:19:22.188 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 664
17-03-17 23:19:22.198 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:19:22.198 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:19:22.198 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 23:19:22.378 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36360 857
17-03-17 23:19:22.528 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1007
17-03-17 23:19:22.568 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 374 ms.
17-03-17 23:19:22.568 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-17 23:19:22.568 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:19:22.568 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 23:19:22.568 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-17 23:19:22.568 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:19:22.568 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 23:19:22.568 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 23:19:22.578 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 23:19:22.578 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 23:19:22.758 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1234
17-03-17 23:19:22.758 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1234
17-03-17 23:19:22.758 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:19:22.758 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:19:22.758 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2468220576, 0x0, 391868352) start.
17-03-17 23:19:22.758 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1234
17-03-17 23:19:22.758 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1234
17-03-17 23:19:22.758 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:19:22.758 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:19:22.758 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2503642840, 0x0, 418435064) start.
17-03-17 23:19:22.948 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1427
17-03-17 23:19:22.948 -07 000000459 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:19:22.948 -07 000000610 INF: FPGA: 'CAMDBLSNAP 472 472 227 227 36360 150' command took 2 ms to send, 1426 ms to get response, and 1434 ms overall
17-03-17 23:19:23.168 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2468220576, 0x0, 391868352) end. Duration was 404 ms.
17-03-17 23:19:23.168 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 23:19:23.168 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:19:23.168 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2503642840, 0x0, 418435064) end. Duration was 404 ms.
17-03-17 23:19:23.168 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 23:19:23.168 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:19:23.168 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:19:23.168 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 23:19:23.168 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 23:19:23.168 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 23:19:23.178 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 23:19:23.218 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 23:19:23.218 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 23:19:23.258 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-17 23:19:23.258 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-17 23:19:23.258 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 23:19:23.258 -07 000000541 INF: FPGA: Recv EMCUR 
17-03-17 23:19:23.268 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:19:23.268 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-17 23:19:23.768 -07 000000627 INF: FPGA: Recv EMIN
17-03-17 23:19:23.768 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 494 ms to get response, and 504 ms overall
17-03-17 23:19:23.768 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-17 23:19:23.768 -07 000000593 INF: FPGA: Recv EMCUR 
17-03-17 23:19:23.778 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:19:23.778 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:19:23.778 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83154296875, Z-Position -0.165646168671259. ------
17-03-17 23:19:23.778 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:19:23.778 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.14015 mm
17-03-17 23:19:23.778 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:19:23.778 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 23:19:23.778 -07 000000459 INF: Y Motor: Moving to 59.9126 mm, started at 74.8315 mm, delta = -14.9189 mm
17-03-17 23:19:23.778 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 30615, sync = True, waitForSettling = False)
17-03-17 23:19:23.778 -07 000000501 INF: Z Motor: Moving to -0.140146 mm, started at -0.165646 mm, distance = 25.50 um
17-03-17 23:19:23.778 -07 000000409 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:19:23.788 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:19:23.788 -07 000000501 INF: FPGA: Xmit ZDACW 30615\n [Z Motor]
17-03-17 23:19:23.788 -07 000000409 INF: FPGA: Recv ZDACW
17-03-17 23:19:23.798 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:19:23.798 -07 000000501 INF: FPGA: 'ZDACW 30615' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 23:19:23.798 -07 000000627 INF: FPGA: Recv YRDPOS 153256
17-03-17 23:19:23.808 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 23:19:23.808 -07 000000429 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:19:23.808 -07 000000459 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:19:23.808 -07 000000459 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-17 23:19:23.808 -07 000000459 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 23:19:23.818 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:19:23.818 -07 000000551 INF: FPGA: Recv ZDACR 30615
17-03-17 23:19:23.828 -07 000000459 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 23:19:23.828 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:19:23.828 -07 000000501 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 23:19:24.008 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:19:24.008 -07 000000429 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 23:19:25.448 -07 000000409 INF: FPGA: Recv YMVTO 122703 23903
17-03-17 23:19:25.448 -07 000000459 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1618 ms to get response, and 1642 ms overall
17-03-17 23:19:25.448 -07 000000459 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 23:19:25.448 -07 000000459 INF: Y Motor: To move from 74.832 to 59.913 (-14.919 mm) should take 23871 steps, but required 23903 steps (14.939 mm). Slippage = 0.020 mm (0.00%).
17-03-17 23:19:25.448 -07 000000459 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1642 ms, distance = 14.919 mm, average velocity = 9.086 mm/sec
17-03-17 23:19:27.058 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:19:27.058 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 73. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1178, R2=1229, Total=2407. Warn if over 250 bubbles per interval.
17-03-17 23:19:27.538 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 74, FrontChillerTemperature: 4.027603,
17-03-17 23:19:28.298 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:19:28.298 -07 000000478 INF: FPGA: Recv YRDPOS 122698
17-03-17 23:19:28.308 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:28.308 -07 000000459 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:19:28.338 -07 000000459 INF: Y Motor: After move to 59.912609, error = -0.001476, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:19:28.338 -07 000000459 INF: Y Motor: Position error after settling = -3 encoder counts (-0.001 mm), Delta during settling = -5 counts (-0.002 mm)
17-03-17 23:19:28.338 -07 000000459 INF: Y Motor: Moved to 59.9111 after 4557 ms
17-03-17 23:19:28.338 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.140146 mm (DAC = 30615)
17-03-17 23:19:28.338 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:28.348 -07 000000593 INF: FPGA: Recv ZSGSRD 31115
17-03-17 23:19:28.348 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 23:19:28.348 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:28.348 -07 000000429 INF: FPGA: Recv ZSGSRD 31114
17-03-17 23:19:28.358 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:19:28.358 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:28.358 -07 000000627 INF: FPGA: Recv ZSGSRD 31103
17-03-17 23:19:28.368 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:28.368 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:28.368 -07 000000459 INF: FPGA: Recv ZSGSRD 31099
17-03-17 23:19:28.378 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:28.378 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:28.378 -07 000000459 INF: FPGA: Recv ZSGSRD 31102
17-03-17 23:19:28.388 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:28.388 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:28.388 -07 000000459 INF: FPGA: Recv ZSGSRD 31113
17-03-17 23:19:28.398 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:28.398 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:28.398 -07 000000459 INF: FPGA: Recv ZSGSRD 31111
17-03-17 23:19:28.408 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:28.408 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:28.408 -07 000000459 INF: FPGA: Recv ZSGSRD 31101
17-03-17 23:19:28.418 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:28.418 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:28.418 -07 000000459 INF: FPGA: Recv ZSGSRD 31108
17-03-17 23:19:28.428 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:28.428 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:28.428 -07 000000459 INF: FPGA: Recv ZSGSRD 31105
17-03-17 23:19:28.438 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:28.438 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:19:28.438 -07 000000459 INF: FPGA: Recv ZPIEZORD 26646
17-03-17 23:19:28.448 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:28.448 -07 000000576 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.7 V, since DAC is at 4.672 V. Piezo Error = -9.8 V.
17-03-17 23:19:28.448 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.1 um, Read 10 ADC samples: Avg = 31107 (-139.4 uncal um), Error = 0.8 uncal um, Median = 31106 (-139.4 uncal um), StdDev = 6 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 31099 (-139.3 uncal um), Max = 31115 (-139.4 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 23:19:28.448 -07 000000576 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31107, posNoise = 8, negNoise = 8
17-03-17 23:19:28.448 -07 000000576 INF: Z Motor: After move to -0.140146, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:19:28.448 -07 000000576 INF: Z Motor: Settle wait time = 4560 ms, measure time = 104 ms (allowed 150 ms), total time = 4664 ms
17-03-17 23:19:28.448 -07 000000576 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 23:19:28.498 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4715 ms
17-03-17 23:19:28.498 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:19:28.498 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:19:28.498 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:19:28.498 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:19:28.498 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:19:28.498 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:19:28.498 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:19:28.498 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:19:28.498 -07 000000429 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 23:19:28.528 -07 000000429 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-17 23:19:28.528 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:19:28.528 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 23:19:28.528 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:19:28.538 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 23:19:28.538 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 43 ms.
17-03-17 23:19:28.548 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:19:28.598 -07 000000486 INF: FPGA: Recv @CAMSNAP turning led on 42
17-03-17 23:19:28.798 -07 000000486 INF: FPGA: Recv @CAMSNAP img rdy 242
17-03-17 23:19:28.798 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 242
17-03-17 23:19:28.798 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:19:28.908 -07 000000459 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:19:28.908 -07 000000459 INF: FPGA: Recv CAMSNAP
17-03-17 23:19:28.908 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 355 ms to get response, and 361 ms overall
17-03-17 23:19:28.908 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2539065104, 0x0, 559484976) start.
17-03-17 23:19:29.028 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2539065104, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 23:19:29.028 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:19:29.028 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:19:29.028 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 233 ms.
17-03-17 23:19:29.108 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:19:29.108 -07 000000593 INF: Image SNR check: start
17-03-17 23:19:29.108 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:19:29.118 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:19:29.118 -07 000000478 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:19:29.128 -07 000000593 INF: Image SNR check: pass  [peak (Max-Min)=58.53]
17-03-17 23:19:29.128 -07 000000593 INF: Autofocus start
17-03-17 23:19:29.128 -07 000000593 INF: MeasureProfile start
17-03-17 23:19:29.138 -07 000000593 INF: MeasureProfile done
17-03-17 23:19:29.138 -07 000000593 INF: X=-32  Z correction [um]=-0.1591732
17-03-17 23:19:29.138 -07 000000593 INF: Autofocus finished
17-03-17 23:19:29.318 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:19:29.318 -07 000000478 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:19:29.318 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.9111328125, Z-position -0.140161319104893. ----------
17-03-17 23:19:29.318 -07 000000610 INF: Cycle	74	Tile	1	Exposure Settings		A	472	G	227	T	227	C	472
17-03-17 23:19:29.328 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29093, sync = True, waitForSettling = True)
17-03-17 23:19:29.328 -07 000000610 INF: Z Motor: Moving to -0.133179 mm, started at -0.140161 mm, distance = 6.98 um
17-03-17 23:19:29.328 -07 000000610 INF: FPGA: Xmit ZDACW 29093\n [Z Motor]
17-03-17 23:19:29.328 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 23:19:29.338 -07 000000610 INF: FPGA: 'ZDACW 29093' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:29.338 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:19:29.338 -07 000000627 INF: FPGA: Recv ZDACR 29093
17-03-17 23:19:29.348 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:29.348 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:19:29.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:29.498 -07 000000486 INF: FPGA: Recv ZSGSRD 30023
17-03-17 23:19:29.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:19:29.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:29.508 -07 000000486 INF: FPGA: Recv ZSGSRD 30023
17-03-17 23:19:29.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:29.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:29.518 -07 000000478 INF: FPGA: Recv ZSGSRD 30025
17-03-17 23:19:29.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:29.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:29.528 -07 000000486 INF: FPGA: Recv ZSGSRD 30016
17-03-17 23:19:29.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:29.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:29.538 -07 000000593 INF: FPGA: Recv ZSGSRD 30013
17-03-17 23:19:29.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:29.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:29.548 -07 000000486 INF: FPGA: Recv ZSGSRD 30027
17-03-17 23:19:29.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:29.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:29.558 -07 000000486 INF: FPGA: Recv ZSGSRD 30020
17-03-17 23:19:29.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 11 ms overall
17-03-17 23:19:29.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:29.568 -07 000000478 INF: FPGA: Recv ZSGSRD 30014
17-03-17 23:19:29.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:19:29.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:29.578 -07 000000486 INF: FPGA: Recv ZSGSRD 30019
17-03-17 23:19:29.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:29.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:29.588 -07 000000627 INF: FPGA: Recv ZSGSRD 30018
17-03-17 23:19:29.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:29.598 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:19:29.598 -07 000000627 INF: FPGA: Recv ZPIEZORD 25492
17-03-17 23:19:29.608 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:29.608 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.439 V. Piezo Error = -9.9 V.
17-03-17 23:19:29.608 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.2 um, Read 10 ADC samples: Avg = 30020 (-132.4 uncal um), Error = 0.8 uncal um, Median = 30020 (-132.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30013 (-132.3 uncal um), Max = 30027 (-132.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 23:19:29.608 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30020, posNoise = 7, negNoise = 7
17-03-17 23:19:29.608 -07 000000610 INF: Z Motor: After move to -0.133179, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:19:29.608 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 23:19:29.608 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:19:29.608 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:19:29.608 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:19:29.608 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:19:29.608 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:19:29.608 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:19:29.608 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:19:29.608 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:19:29.608 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:19:29.608 -07 000000561 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 23:19:29.608 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:19:29.608 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:19:29.608 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 23:19:29.618 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:19:29.618 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 23:19:29.618 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 23:19:29.628 -07 000000561 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 20 ms.
17-03-17 23:19:29.628 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:19:29.628 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 23:19:29.628 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:19:29.638 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 23:19:29.638 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 32 ms.
17-03-17 23:19:29.648 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 472 472 227 227 29270 150\n [Camera]
17-03-17 23:19:29.848 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:19:30.318 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 664
17-03-17 23:19:30.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 664
17-03-17 23:19:30.318 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:19:30.318 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 664
17-03-17 23:19:30.318 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 664
17-03-17 23:19:30.318 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:19:30.318 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:19:30.318 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 23:19:30.328 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:19:30.328 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2468220576, 0x0, 418435064) start.
17-03-17 23:19:30.508 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29270 857
17-03-17 23:19:30.658 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1007
17-03-17 23:19:30.698 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 23:19:30.698 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-17 23:19:30.698 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:19:30.698 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:19:30.698 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 23:19:30.698 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2468220576, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 23:19:30.698 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 23:19:30.698 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:19:30.708 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:19:30.708 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 23:19:30.888 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1234
17-03-17 23:19:30.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1234
17-03-17 23:19:30.888 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:19:30.888 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1234
17-03-17 23:19:30.888 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1234
17-03-17 23:19:30.888 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:19:30.888 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:19:30.888 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 23:19:31.008 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:19:31.008 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2503642840, 0x0, 391868352) start.
17-03-17 23:19:31.078 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1427
17-03-17 23:19:31.078 -07 000000627 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:19:31.078 -07 000000610 INF: FPGA: 'CAMDBLSNAP 472 472 227 227 29270 150' command took 2 ms to send, 1425 ms to get response, and 1434 ms overall
17-03-17 23:19:31.078 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:19:31.078 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.9111328125, Z-Position -0.133178200506799. ------
17-03-17 23:19:31.088 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:19:31.088 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13927 mm
17-03-17 23:19:31.088 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:19:31.088 -07 000000409 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:19:31.088 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 23:19:31.088 -07 000000576 INF: Y Motor: Moving to 60.7426 mm, started at 59.9111 mm, delta = 0.8315 mm
17-03-17 23:19:31.088 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 30422, sync = True, waitForSettling = False)
17-03-17 23:19:31.088 -07 000000501 INF: Z Motor: Moving to -0.139263 mm, started at -0.133178 mm, distance = -6.08 um
17-03-17 23:19:31.098 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:31.098 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:19:31.098 -07 000000551 INF: FPGA: Recv YRDPOS 122698
17-03-17 23:19:31.108 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 23:19:31.108 -07 000000576 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:19:31.108 -07 000000576 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:19:31.108 -07 000000576 INF: Y Motor: Moving 1330 steps2
17-03-17 23:19:31.108 -07 000000501 INF: FPGA: Xmit ZDACW 30422\n [Z Motor]
17-03-17 23:19:31.108 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 23:19:31.118 -07 000000501 INF: FPGA: 'ZDACW 30422' command took 1 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 23:19:31.118 -07 000000486 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:19:31.128 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:19:31.138 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:19:31.138 -07 000000409 INF: FPGA: Recv ZDACR 30422
17-03-17 23:19:31.148 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:19:31.148 -07 000000501 INF: Z Motor: MoveAbsStepped took 56 ms (did NOT wait for settling yet))
17-03-17 23:19:31.278 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 23:19:31.278 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 23:19:31.278 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:19:31.288 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:19:31.288 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 23:19:31.318 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:19:31.318 -07 000000486 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 23:19:31.408 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2503642840, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 23:19:31.408 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 23:19:31.408 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:19:31.408 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 23:19:31.408 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 520 ms.
17-03-17 23:19:31.498 -07 000000478 INF: FPGA: Recv YMVTILE
17-03-17 23:19:31.498 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 23:19:31.538 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:19:31.538 -07 000000501 INF: FPGA: Recv YRDPOS 124381
17-03-17 23:19:31.548 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:19:31.548 -07 000000576 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:19:31.548 -07 000000576 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 23:19:31.548 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.831 mm, average velocity = 2.094 mm/sec
17-03-17 23:19:32.058 -07 000000409 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:19:32.058 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 73. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1178, R2=1229, Total=2407. Warn if over 250 bubbles per interval.
17-03-17 23:19:32.498 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:19:32.498 -07 000000409 INF: FPGA: Recv YRDPOS 124381
17-03-17 23:19:32.508 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:32.508 -07 000000576 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:19:32.528 -07 000000576 INF: Y Motor: After move to 60.742607, error = -0.009697, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:19:32.528 -07 000000576 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:19:32.528 -07 000000576 INF: Y Motor: Moved to 60.7329 after 1443 ms (table move)
17-03-17 23:19:32.538 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139263 mm (DAC = 30422)
17-03-17 23:19:32.538 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:32.538 -07 000000576 INF: FPGA: Recv ZSGSRD 30970
17-03-17 23:19:32.548 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:32.548 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:32.548 -07 000000462 INF: FPGA: Recv ZSGSRD 30971
17-03-17 23:19:32.558 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:32.558 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:32.558 -07 000000576 INF: FPGA: Recv ZSGSRD 30974
17-03-17 23:19:32.568 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:32.568 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:32.568 -07 000000576 INF: FPGA: Recv ZSGSRD 30970
17-03-17 23:19:32.578 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:32.588 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:32.588 -07 000000576 INF: FPGA: Recv ZSGSRD 30969
17-03-17 23:19:32.598 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:19:32.598 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:32.598 -07 000000462 INF: FPGA: Recv ZSGSRD 30963
17-03-17 23:19:32.608 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:32.608 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:32.608 -07 000000576 INF: FPGA: Recv ZSGSRD 30963
17-03-17 23:19:32.618 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:32.618 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:32.618 -07 000000576 INF: FPGA: Recv ZSGSRD 30967
17-03-17 23:19:32.628 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:32.628 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:32.628 -07 000000576 INF: FPGA: Recv ZSGSRD 30977
17-03-17 23:19:32.638 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:32.638 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:32.638 -07 000000462 INF: FPGA: Recv ZSGSRD 30970
17-03-17 23:19:32.648 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:32.648 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:19:32.648 -07 000000576 INF: FPGA: Recv ZPIEZORD 26774
17-03-17 23:19:32.658 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:32.658 -07 000000561 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.642 V. Piezo Error = -9.2 V.
17-03-17 23:19:32.658 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.3 um, Read 10 ADC samples: Avg = 30969 (-138.5 uncal um), Error = 0.8 uncal um, Median = 30970 (-138.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30963 (-138.4 uncal um), Max = 30977 (-138.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:19:32.658 -07 000000561 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30969, posNoise = 8, negNoise = 6
17-03-17 23:19:32.658 -07 000000561 INF: Z Motor: After move to -0.139263, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:19:32.658 -07 000000561 INF: Z Motor: Settle wait time = 1445 ms, measure time = 121 ms (allowed 150 ms), total time = 1566 ms
17-03-17 23:19:32.658 -07 000000561 INF: Z Motor: Waiting extra 29 ms after reading position to reach expected total of 150 ms
17-03-17 23:19:32.688 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1599 ms
17-03-17 23:19:32.688 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:19:32.688 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:19:32.688 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:19:32.688 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:19:32.688 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:19:32.688 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:19:32.688 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:19:32.688 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:19:32.688 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:19:32.698 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:19:32.698 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:19:32.708 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 23:19:32.708 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 23:19:32.708 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:19:32.758 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:19:32.898 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 74, FrontChillerTemperature: 4.030322,
17-03-17 23:19:32.958 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:19:32.958 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:19:32.958 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:19:32.958 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-17 23:19:32.998 -07 000000486 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:19:32.998 -07 000000459 INF: FPGA: Recv CAMSNAP
17-03-17 23:19:32.998 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 23:19:33.088 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 23:19:33.088 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:19:33.088 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:19:33.088 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 23:19:33.098 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:19:33.098 -07 000000462 INF: Autofocus start
17-03-17 23:19:33.098 -07 000000462 INF: MeasureProfile start
17-03-17 23:19:33.098 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:19:33.108 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:19:33.108 -07 000000593 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:19:33.108 -07 000000462 INF: MeasureProfile done
17-03-17 23:19:33.108 -07 000000462 INF: X=0  Z correction [um]=-0.02394831
17-03-17 23:19:33.108 -07 000000462 INF: Autofocus finished
17-03-17 23:19:33.308 -07 000000462 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:19:33.308 -07 000000593 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-17 23:19:33.308 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73291015625, Z-position -0.13927477782933. ----------
17-03-17 23:19:33.308 -07 000000610 INF: Cycle	74	Tile	2	Exposure Settings		A	472	G	227	T	227	C	472
17-03-17 23:19:33.318 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28930, sync = True, waitForSettling = True)
17-03-17 23:19:33.318 -07 000000610 INF: Z Motor: Moving to -0.132433 mm, started at -0.139275 mm, distance = 6.84 um
17-03-17 23:19:33.318 -07 000000610 INF: FPGA: Xmit ZDACW 28930\n [Z Motor]
17-03-17 23:19:33.318 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 23:19:33.328 -07 000000610 INF: FPGA: 'ZDACW 28930' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:19:33.328 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:19:33.328 -07 000000462 INF: FPGA: Recv ZDACR 28930
17-03-17 23:19:33.338 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:33.338 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:19:33.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:33.488 -07 000000459 INF: FPGA: Recv ZSGSRD 29906
17-03-17 23:19:33.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:19:33.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:33.498 -07 000000459 INF: FPGA: Recv ZSGSRD 29904
17-03-17 23:19:33.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:33.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:33.508 -07 000000462 INF: FPGA: Recv ZSGSRD 29907
17-03-17 23:19:33.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:33.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:33.518 -07 000000459 INF: FPGA: Recv ZSGSRD 29903
17-03-17 23:19:33.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:33.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:33.528 -07 000000459 INF: FPGA: Recv ZSGSRD 29900
17-03-17 23:19:33.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:33.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:33.538 -07 000000551 INF: FPGA: Recv ZSGSRD 29909
17-03-17 23:19:33.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:33.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:33.548 -07 000000501 INF: FPGA: Recv ZSGSRD 29901
17-03-17 23:19:33.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:33.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:33.558 -07 000000551 INF: FPGA: Recv ZSGSRD 29905
17-03-17 23:19:33.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:33.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:33.568 -07 000000551 INF: FPGA: Recv ZSGSRD 29908
17-03-17 23:19:33.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:33.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:33.578 -07 000000551 INF: FPGA: Recv ZSGSRD 29903
17-03-17 23:19:33.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:33.588 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:19:33.588 -07 000000501 INF: FPGA: Recv ZPIEZORD 25421
17-03-17 23:19:33.598 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:33.598 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.414 V. Piezo Error = -9.8 V.
17-03-17 23:19:33.598 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.4 um, Read 10 ADC samples: Avg = 29905 (-131.7 uncal um), Error = 0.8 uncal um, Median = 29904 (-131.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29900 (-131.6 uncal um), Max = 29909 (-131.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:19:33.598 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29905, posNoise = 4, negNoise = 5
17-03-17 23:19:33.598 -07 000000610 INF: Z Motor: After move to -0.132433, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:19:33.598 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 23:19:33.598 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:19:33.598 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:19:33.598 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:19:33.598 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:19:33.598 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:19:33.598 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:19:33.598 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:19:33.598 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:19:33.598 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:19:33.598 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:19:33.598 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:19:33.598 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:19:33.608 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:19:33.608 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:19:33.608 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 23:19:33.608 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:19:33.618 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 23:19:33.618 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:19:33.618 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 23:19:33.618 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 23:19:33.628 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 472 472 227 227 29107 150\n [Camera]
17-03-17 23:19:33.828 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:19:34.298 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 664
17-03-17 23:19:34.298 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 664
17-03-17 23:19:34.298 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:19:34.298 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 664
17-03-17 23:19:34.298 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 664
17-03-17 23:19:34.298 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:19:34.298 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:19:34.298 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 23:19:34.308 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:19:34.308 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2468220576, 0x0, 418435064) start.
17-03-17 23:19:34.488 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29107 857
17-03-17 23:19:34.638 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1007
17-03-17 23:19:34.698 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 23:19:34.698 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 23:19:34.698 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:19:34.698 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2468220576, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 23:19:34.698 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:19:34.698 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 23:19:34.698 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 23:19:34.698 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:19:34.708 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:19:34.708 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 23:19:34.868 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1234
17-03-17 23:19:34.868 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1234
17-03-17 23:19:34.868 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:19:34.868 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:19:34.868 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-17 23:19:34.868 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1234
17-03-17 23:19:34.868 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1234
17-03-17 23:19:34.868 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:19:34.868 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:19:34.868 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-17 23:19:35.058 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1427
17-03-17 23:19:35.058 -07 000000551 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:19:35.058 -07 000000610 INF: FPGA: 'CAMDBLSNAP 472 472 227 227 29107 150' command took 2 ms to send, 1424 ms to get response, and 1434 ms overall
17-03-17 23:19:35.058 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:19:35.058 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73291015625, Z-Position -0.132439416110496. ------
17-03-17 23:19:35.068 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:19:35.068 -07 000000429 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13917 mm
17-03-17 23:19:35.068 -07 000000429 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:19:35.068 -07 000000459 INF: Z Motor: Entering MoveAbsStepped (DAC = 30402, sync = True, waitForSettling = False)
17-03-17 23:19:35.068 -07 000000459 INF: Z Motor: Moving to -0.139171 mm, started at -0.132439 mm, distance = -6.73 um
17-03-17 23:19:35.068 -07 000000478 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 23:19:35.068 -07 000000478 INF: Y Motor: Moving to 61.5726 mm, started at 60.7329 mm, delta = 0.8397 mm
17-03-17 23:19:35.068 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:19:35.078 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:19:35.078 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:19:35.078 -07 000000627 INF: FPGA: Recv YRDPOS 124382
17-03-17 23:19:35.088 -07 000000459 INF: FPGA: Xmit ZDACW 30402\n [Z Motor]
17-03-17 23:19:35.088 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 23:19:35.088 -07 000000478 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:19:35.088 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 23:19:35.088 -07 000000478 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:19:35.088 -07 000000478 INF: Y Motor: Moving 1343 steps-20
17-03-17 23:19:35.098 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:19:35.098 -07 000000459 INF: FPGA: 'ZDACW 30402' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 23:19:35.108 -07 000000478 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:19:35.118 -07 000000459 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:19:35.118 -07 000000627 INF: FPGA: Recv ZDACR 30402
17-03-17 23:19:35.128 -07 000000459 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:19:35.128 -07 000000459 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet))
17-03-17 23:19:35.268 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 23:19:35.268 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 23:19:35.268 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:19:35.278 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 23:19:35.278 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 23:19:35.278 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:19:35.278 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:19:35.278 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 23:19:35.278 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 23:19:35.288 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 23:19:35.298 -07 000000486 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:19:35.298 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 23:19:35.478 -07 000000459 INF: FPGA: Recv YMVTILE
17-03-17 23:19:35.478 -07 000000478 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-17 23:19:35.518 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:19:35.528 -07 000000593 INF: FPGA: Recv YRDPOS 126083
17-03-17 23:19:35.528 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 23:19:35.528 -07 000000478 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:19:35.528 -07 000000478 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 23:19:35.528 -07 000000478 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.840 mm, average velocity = 2.142 mm/sec
17-03-17 23:19:36.478 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:19:36.478 -07 000000618 INF: FPGA: Recv YRDPOS 126083
17-03-17 23:19:36.488 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:36.488 -07 000000478 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:19:36.508 -07 000000478 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:19:36.508 -07 000000478 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:19:36.508 -07 000000478 INF: Y Motor: Moved to 61.5640 after 1440 ms (table move)
17-03-17 23:19:36.508 -07 000000429 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139171 mm (DAC = 30402)
17-03-17 23:19:36.508 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:36.518 -07 000000551 INF: FPGA: Recv ZSGSRD 30961
17-03-17 23:19:36.518 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 23:19:36.518 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:36.518 -07 000000576 INF: FPGA: Recv ZSGSRD 30957
17-03-17 23:19:36.528 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:19:36.528 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:36.528 -07 000000576 INF: FPGA: Recv ZSGSRD 30946
17-03-17 23:19:36.538 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:36.538 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:36.538 -07 000000576 INF: FPGA: Recv ZSGSRD 30954
17-03-17 23:19:36.548 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:36.548 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:36.548 -07 000000478 INF: FPGA: Recv ZSGSRD 30964
17-03-17 23:19:36.558 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:36.558 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:36.558 -07 000000593 INF: FPGA: Recv ZSGSRD 30959
17-03-17 23:19:36.568 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:36.568 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:36.568 -07 000000462 INF: FPGA: Recv ZSGSRD 30958
17-03-17 23:19:36.578 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:36.578 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:36.578 -07 000000593 INF: FPGA: Recv ZSGSRD 30948
17-03-17 23:19:36.588 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:36.588 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:36.588 -07 000000593 INF: FPGA: Recv ZSGSRD 30950
17-03-17 23:19:36.598 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:36.598 -07 000000429 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:36.598 -07 000000627 INF: FPGA: Recv ZSGSRD 30950
17-03-17 23:19:36.608 -07 000000429 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:36.608 -07 000000429 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:19:36.608 -07 000000462 INF: FPGA: Recv ZPIEZORD 26828
17-03-17 23:19:36.618 -07 000000429 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:36.618 -07 000000429 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.639 V. Piezo Error = -9.1 V.
17-03-17 23:19:36.618 -07 000000429 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.2 um, Read 10 ADC samples: Avg = 30955 (-138.4 uncal um), Error = 0.8 uncal um, Median = 30956 (-138.4 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30946 (-138.3 uncal um), Max = 30964 (-138.4 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 23:19:36.618 -07 000000429 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30955, posNoise = 9, negNoise = 9
17-03-17 23:19:36.618 -07 000000429 INF: Z Motor: After move to -0.139171, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:19:36.618 -07 000000429 INF: Z Motor: Settle wait time = 1443 ms, measure time = 102 ms (allowed 150 ms), total time = 1545 ms
17-03-17 23:19:36.618 -07 000000429 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 23:19:36.668 -07 000000429 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1597 ms
17-03-17 23:19:36.668 -07 000000429 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:19:36.668 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:19:36.668 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:19:36.668 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:19:36.668 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:19:36.668 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:19:36.668 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:19:36.668 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:19:36.668 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:19:36.678 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 23:19:36.678 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:19:36.688 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 23:19:36.688 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 23:19:36.688 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:19:36.738 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:19:36.938 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:19:36.938 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:19:36.938 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:19:36.938 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 658880552, 0x0, 559484976) start.
17-03-17 23:19:36.978 -07 000000593 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:19:36.978 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-17 23:19:36.978 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 286 ms overall
17-03-17 23:19:37.058 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:19:37.058 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 658880552, 0x0, 559484976) end. Duration was 121 ms.
17-03-17 23:19:37.058 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:19:37.058 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:19:37.058 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 124 ms.
17-03-17 23:19:37.068 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 73. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1178, R2=1229, Total=2407. Warn if over 250 bubbles per interval.
17-03-17 23:19:37.078 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:19:37.078 -07 000000486 INF: Autofocus start
17-03-17 23:19:37.078 -07 000000486 INF: MeasureProfile start
17-03-17 23:19:37.078 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:19:37.088 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:19:37.088 -07 000000478 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:19:37.088 -07 000000486 INF: MeasureProfile done
17-03-17 23:19:37.088 -07 000000486 INF: X=32  Z correction [um]=0.1299841
17-03-17 23:19:37.088 -07 000000486 INF: Autofocus finished
17-03-17 23:19:37.288 -07 000000551 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:19:37.288 -07 000000478 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:19:37.288 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.139184838859345. ----------
17-03-17 23:19:37.288 -07 000000610 INF: Cycle	74	Tile	3	Exposure Settings		A	472	G	227	T	227	C	472
17-03-17 23:19:37.298 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28943, sync = True, waitForSettling = True)
17-03-17 23:19:37.298 -07 000000610 INF: Z Motor: Moving to -0.132493 mm, started at -0.139185 mm, distance = 6.69 um
17-03-17 23:19:37.298 -07 000000610 INF: FPGA: Xmit ZDACW 28943\n [Z Motor]
17-03-17 23:19:37.298 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 23:19:37.308 -07 000000610 INF: FPGA: 'ZDACW 28943' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:19:37.308 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:19:37.308 -07 000000429 INF: FPGA: Recv ZDACR 28943
17-03-17 23:19:37.318 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:37.318 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:19:37.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:37.468 -07 000000501 INF: FPGA: Recv ZSGSRD 29912
17-03-17 23:19:37.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:19:37.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:37.478 -07 000000478 INF: FPGA: Recv ZSGSRD 29912
17-03-17 23:19:37.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:37.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:37.488 -07 000000429 INF: FPGA: Recv ZSGSRD 29913
17-03-17 23:19:37.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:37.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:37.498 -07 000000501 INF: FPGA: Recv ZSGSRD 29915
17-03-17 23:19:37.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:37.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:37.508 -07 000000429 INF: FPGA: Recv ZSGSRD 29910
17-03-17 23:19:37.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:37.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:37.518 -07 000000478 INF: FPGA: Recv ZSGSRD 29920
17-03-17 23:19:37.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:37.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:37.528 -07 000000576 INF: FPGA: Recv ZSGSRD 29914
17-03-17 23:19:37.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:37.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:37.538 -07 000000478 INF: FPGA: Recv ZSGSRD 29913
17-03-17 23:19:37.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:37.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:37.548 -07 000000576 INF: FPGA: Recv ZSGSRD 29915
17-03-17 23:19:37.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:37.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:37.558 -07 000000429 INF: FPGA: Recv ZSGSRD 29916
17-03-17 23:19:37.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:37.568 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:19:37.568 -07 000000478 INF: FPGA: Recv ZPIEZORD 25516
17-03-17 23:19:37.578 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:37.578 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.416 V. Piezo Error = -9.7 V.
17-03-17 23:19:37.578 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.5 um, Read 10 ADC samples: Avg = 29914 (-131.7 uncal um), Error = 0.8 uncal um, Median = 29914 (-131.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29910 (-131.7 uncal um), Max = 29920 (-131.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:19:37.578 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29914, posNoise = 6, negNoise = 4
17-03-17 23:19:37.578 -07 000000610 INF: Z Motor: After move to -0.132493, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:19:37.578 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 23:19:37.578 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:19:37.578 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:19:37.578 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:19:37.578 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:19:37.578 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:19:37.578 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:19:37.578 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:19:37.578 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:19:37.578 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 23:19:37.578 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:19:37.578 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:19:37.578 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:19:37.588 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:19:37.588 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:19:37.588 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:19:37.588 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:19:37.598 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 23:19:37.598 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 23:19:37.598 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 23:19:37.598 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 23:19:37.598 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 472 472 227 227 29120 150\n [Camera]
17-03-17 23:19:37.798 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-17 23:19:38.258 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 74, FrontChillerTemperature: 4.02213,
17-03-17 23:19:38.268 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 664
17-03-17 23:19:38.268 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 664
17-03-17 23:19:38.278 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:19:38.278 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:19:38.278 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 23:19:38.278 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 664
17-03-17 23:19:38.278 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 664
17-03-17 23:19:38.278 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:19:38.278 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:19:38.278 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 23:19:38.458 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29120 857
17-03-17 23:19:38.608 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1007
17-03-17 23:19:38.648 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 23:19:38.648 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 23:19:38.648 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:19:38.648 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 23:19:38.648 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 23:19:38.648 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:19:38.658 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:19:38.658 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 23:19:38.658 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 23:19:38.668 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 23:19:38.838 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1234
17-03-17 23:19:38.838 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1234
17-03-17 23:19:38.838 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:19:38.838 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:19:38.838 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 23:19:38.838 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1234
17-03-17 23:19:38.838 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1234
17-03-17 23:19:38.838 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:19:38.838 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:19:38.838 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 23:19:39.028 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1427
17-03-17 23:19:39.028 -07 000000593 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:19:39.028 -07 000000610 INF: FPGA: 'CAMDBLSNAP 472 472 227 227 29120 150' command took 2 ms to send, 1427 ms to get response, and 1434 ms overall
17-03-17 23:19:39.028 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:19:39.028 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56396484375, Z-Position -0.132497234019772. ------
17-03-17 23:19:39.038 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:19:39.038 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13897 mm
17-03-17 23:19:39.038 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:19:39.038 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 23:19:39.038 -07 000000462 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-17 23:19:39.038 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:19:39.038 -07 000000593 INF: Z Motor: Entering MoveAbsStepped (DAC = 30358, sync = True, waitForSettling = False)
17-03-17 23:19:39.038 -07 000000593 INF: Z Motor: Moving to -0.138970 mm, started at -0.132497 mm, distance = -6.47 um
17-03-17 23:19:39.048 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:19:39.048 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:19:39.048 -07 000000478 INF: FPGA: Recv YRDPOS 126083
17-03-17 23:19:39.058 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 23:19:39.058 -07 000000462 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:19:39.058 -07 000000462 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:19:39.058 -07 000000462 INF: Y Motor: Moving 1342 steps-18
17-03-17 23:19:39.058 -07 000000593 INF: FPGA: Xmit ZDACW 30358\n [Z Motor]
17-03-17 23:19:39.058 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 23:19:39.068 -07 000000429 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:19:39.068 -07 000000593 INF: FPGA: 'ZDACW 30358' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 23:19:39.078 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:19:39.088 -07 000000593 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:19:39.088 -07 000000448 INF: FPGA: Recv ZDACR 30358
17-03-17 23:19:39.098 -07 000000593 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:19:39.098 -07 000000593 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-17 23:19:39.238 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 23:19:39.238 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 23:19:39.238 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:19:39.238 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 23:19:39.238 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 23:19:39.238 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:19:39.248 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:19:39.248 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 23:19:39.248 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 23:19:39.248 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 23:19:39.268 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:19:39.268 -07 000000429 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 23:19:39.448 -07 000000593 INF: FPGA: Recv YMVTILE
17-03-17 23:19:39.448 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 23:19:39.488 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:19:39.498 -07 000000551 INF: FPGA: Recv YRDPOS 127786
17-03-17 23:19:39.498 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 4 ms overall
17-03-17 23:19:39.498 -07 000000462 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:19:39.498 -07 000000462 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 23:19:39.498 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.112 mm/sec
17-03-17 23:19:40.448 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:19:40.448 -07 000000627 INF: FPGA: Recv YRDPOS 127786
17-03-17 23:19:40.458 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:40.458 -07 000000462 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:19:40.478 -07 000000462 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:19:40.478 -07 000000462 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:19:40.478 -07 000000462 INF: Y Motor: Moved to 62.3955 after 1438 ms (table move)
17-03-17 23:19:40.478 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138970 mm (DAC = 30358)
17-03-17 23:19:40.478 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:40.488 -07 000000429 INF: FPGA: Recv ZSGSRD 30925
17-03-17 23:19:40.488 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 23:19:40.488 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:40.488 -07 000000501 INF: FPGA: Recv ZSGSRD 30919
17-03-17 23:19:40.498 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:40.498 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:40.498 -07 000000486 INF: FPGA: Recv ZSGSRD 30922
17-03-17 23:19:40.508 -07 000000576 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:40.508 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:40.508 -07 000000478 INF: FPGA: Recv ZSGSRD 30929
17-03-17 23:19:40.518 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:40.518 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:40.518 -07 000000627 INF: FPGA: Recv ZSGSRD 30926
17-03-17 23:19:40.528 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:40.528 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:40.528 -07 000000501 INF: FPGA: Recv ZSGSRD 30925
17-03-17 23:19:40.538 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:40.538 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:40.538 -07 000000551 INF: FPGA: Recv ZSGSRD 30919
17-03-17 23:19:40.548 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:40.548 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:40.548 -07 000000501 INF: FPGA: Recv ZSGSRD 30921
17-03-17 23:19:40.558 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:40.558 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:40.558 -07 000000627 INF: FPGA: Recv ZSGSRD 30918
17-03-17 23:19:40.568 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:40.568 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:40.568 -07 000000478 INF: FPGA: Recv ZSGSRD 30926
17-03-17 23:19:40.578 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:40.578 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:19:40.578 -07 000000551 INF: FPGA: Recv ZPIEZORD 26828
17-03-17 23:19:40.588 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:40.588 -07 000000576 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.632 V. Piezo Error = -9.0 V.
17-03-17 23:19:40.588 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.0 um, Read 10 ADC samples: Avg = 30923 (-138.2 uncal um), Error = 0.8 uncal um, Median = 30924 (-138.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30918 (-138.1 uncal um), Max = 30929 (-138.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:19:40.588 -07 000000576 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30923, posNoise = 6, negNoise = 5
17-03-17 23:19:40.588 -07 000000576 INF: Z Motor: After move to -0.138970, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:19:40.588 -07 000000576 INF: Z Motor: Settle wait time = 1438 ms, measure time = 103 ms (allowed 150 ms), total time = 1541 ms
17-03-17 23:19:40.588 -07 000000576 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 23:19:40.638 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1597 ms
17-03-17 23:19:40.638 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:19:40.638 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:19:40.638 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:19:40.638 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:19:40.638 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:19:40.638 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:19:40.638 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:19:40.638 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 23:19:40.638 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:19:40.648 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:19:40.648 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:19:40.658 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 23:19:40.658 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 23:19:40.658 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:19:40.708 -07 000000486 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:19:40.908 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:19:40.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:19:40.908 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:19:40.908 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) start.
17-03-17 23:19:40.948 -07 000000448 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:19:40.948 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-17 23:19:40.948 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 23:19:41.028 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) end. Duration was 124 ms.
17-03-17 23:19:41.028 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:19:41.028 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 23:19:41.028 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 126 ms.
17-03-17 23:19:41.048 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:19:41.048 -07 000000486 INF: Autofocus start
17-03-17 23:19:41.048 -07 000000486 INF: MeasureProfile start
17-03-17 23:19:41.048 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:19:41.058 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:19:41.058 -07 000000593 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:19:41.058 -07 000000486 INF: MeasureProfile done
17-03-17 23:19:41.058 -07 000000486 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 23:19:41.058 -07 000000486 INF: Autofocus finished
17-03-17 23:19:41.258 -07 000000409 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:19:41.258 -07 000000593 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:19:41.258 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.138979264070809. ----------
17-03-17 23:19:41.258 -07 000000610 INF: Cycle	74	Tile	4	Exposure Settings		A	472	G	227	T	227	C	472
17-03-17 23:19:41.268 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28853, sync = True, waitForSettling = True)
17-03-17 23:19:41.268 -07 000000610 INF: Z Motor: Moving to -0.132081 mm, started at -0.138979 mm, distance = 6.90 um
17-03-17 23:19:41.268 -07 000000610 INF: FPGA: Xmit ZDACW 28853\n [Z Motor]
17-03-17 23:19:41.268 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 23:19:41.278 -07 000000610 INF: FPGA: 'ZDACW 28853' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:19:41.278 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:19:41.278 -07 000000478 INF: FPGA: Recv ZDACR 28853
17-03-17 23:19:41.288 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:41.288 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:19:41.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:41.438 -07 000000448 INF: FPGA: Recv ZSGSRD 29852
17-03-17 23:19:41.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:19:41.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:41.448 -07 000000618 INF: FPGA: Recv ZSGSRD 29852
17-03-17 23:19:41.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:41.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:41.458 -07 000000627 INF: FPGA: Recv ZSGSRD 29849
17-03-17 23:19:41.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:41.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:41.468 -07 000000561 INF: FPGA: Recv ZSGSRD 29846
17-03-17 23:19:41.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:41.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:41.478 -07 000000593 INF: FPGA: Recv ZSGSRD 29856
17-03-17 23:19:41.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:41.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:41.488 -07 000000501 INF: FPGA: Recv ZSGSRD 29843
17-03-17 23:19:41.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:41.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:41.498 -07 000000551 INF: FPGA: Recv ZSGSRD 29850
17-03-17 23:19:41.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:41.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:41.508 -07 000000576 INF: FPGA: Recv ZSGSRD 29856
17-03-17 23:19:41.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:41.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:41.518 -07 000000482 INF: FPGA: Recv ZSGSRD 29852
17-03-17 23:19:41.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:41.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:41.528 -07 000000459 INF: FPGA: Recv ZSGSRD 29852
17-03-17 23:19:41.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:41.538 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:19:41.538 -07 000000541 INF: FPGA: Recv ZPIEZORD 25379
17-03-17 23:19:41.548 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:41.548 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.403 V. Piezo Error = -9.8 V.
17-03-17 23:19:41.548 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.1 um, Read 10 ADC samples: Avg = 29851 (-131.3 uncal um), Error = 0.8 uncal um, Median = 29852 (-131.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29843 (-131.3 uncal um), Max = 29856 (-131.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 23:19:41.548 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29851, posNoise = 5, negNoise = 8
17-03-17 23:19:41.548 -07 000000610 INF: Z Motor: After move to -0.132081, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:19:41.548 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 23:19:41.548 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:19:41.548 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:19:41.548 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:19:41.548 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:19:41.548 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:19:41.548 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:19:41.548 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:19:41.548 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:19:41.548 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 3 ms.
17-03-17 23:19:41.548 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:19:41.548 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 4 ms.
17-03-17 23:19:41.548 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:19:41.558 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:19:41.558 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:19:41.558 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 23:19:41.558 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:19:41.568 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 23:19:41.568 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 23:19:41.568 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 23:19:41.568 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 23:19:41.568 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 472 472 227 227 29029 150\n [Camera]
17-03-17 23:19:41.768 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:19:42.058 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:19:42.058 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 73. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1178, R2=1229, Total=2407. Warn if over 250 bubbles per interval.
17-03-17 23:19:42.238 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 664
17-03-17 23:19:42.238 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 664
17-03-17 23:19:42.238 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:19:42.238 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:19:42.238 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 23:19:42.238 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 664
17-03-17 23:19:42.248 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 664
17-03-17 23:19:42.248 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:19:42.248 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:19:42.248 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 23:19:42.428 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29029 857
17-03-17 23:19:42.578 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1007
17-03-17 23:19:42.618 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 23:19:42.628 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 23:19:42.628 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:19:42.628 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 23:19:42.628 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 23:19:42.628 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:19:42.628 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 23:19:42.628 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 23:19:42.628 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:19:42.638 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 23:19:42.808 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1234
17-03-17 23:19:42.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1234
17-03-17 23:19:42.808 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:19:42.808 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:19:42.808 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 23:19:42.808 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1234
17-03-17 23:19:42.808 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1234
17-03-17 23:19:42.818 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:19:42.818 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:19:42.818 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 23:19:42.998 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP 1427
17-03-17 23:19:42.998 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:19:42.998 -07 000000610 INF: FPGA: 'CAMDBLSNAP 472 472 227 227 29029 150' command took 2 ms to send, 1428 ms to get response, and 1435 ms overall
17-03-17 23:19:43.008 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:19:43.008 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.3955078125, Z-Position -0.132092508654841. ------
17-03-17 23:19:43.008 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:19:43.008 -07 000000409 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13878 mm
17-03-17 23:19:43.008 -07 000000409 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:19:43.008 -07 000000593 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 23:19:43.008 -07 000000593 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-17 23:19:43.008 -07 000000448 INF: Z Motor: Entering MoveAbsStepped (DAC = 30316, sync = True, waitForSettling = False)
17-03-17 23:19:43.008 -07 000000448 INF: Z Motor: Moving to -0.138778 mm, started at -0.132093 mm, distance = -6.69 um
17-03-17 23:19:43.008 -07 000000618 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:19:43.018 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:19:43.018 -07 000000448 INF: FPGA: Xmit ZDACW 30316\n [Z Motor]
17-03-17 23:19:43.018 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 23:19:43.028 -07 000000448 INF: FPGA: 'ZDACW 30316' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 23:19:43.028 -07 000000448 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:19:43.028 -07 000000618 INF: FPGA: Recv ZDACR 30316
17-03-17 23:19:43.038 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:19:43.038 -07 000000448 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:43.038 -07 000000448 INF: Z Motor: MoveAbsStepped took 23 ms (did NOT wait for settling yet))
17-03-17 23:19:43.038 -07 000000618 INF: FPGA: Recv YRDPOS 127786
17-03-17 23:19:43.048 -07 000000459 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:19:43.048 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 32 ms overall
17-03-17 23:19:43.048 -07 000000593 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:19:43.048 -07 000000593 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:19:43.048 -07 000000593 INF: Y Motor: Moving 1339 steps-15
17-03-17 23:19:43.058 -07 000000593 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:19:43.208 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 23:19:43.208 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 23:19:43.208 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:19:43.208 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 23:19:43.208 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 23:19:43.208 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:19:43.208 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:19:43.208 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 23:19:43.208 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 23:19:43.218 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 23:19:43.248 -07 000000429 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:19:43.248 -07 000000459 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 230 ms overall
17-03-17 23:19:43.428 -07 000000486 INF: FPGA: Recv YMVTILE
17-03-17 23:19:43.428 -07 000000593 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 23:19:43.468 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:19:43.478 -07 000000448 INF: FPGA: Recv YRDPOS 129483
17-03-17 23:19:43.478 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 23:19:43.478 -07 000000593 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:19:43.478 -07 000000593 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 23:19:43.478 -07 000000593 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.837 mm, average velocity = 2.157 mm/sec
17-03-17 23:19:43.618 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 74, FrontChillerTemperature: 3.985358,
17-03-17 23:19:44.428 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:19:44.428 -07 000000482 INF: FPGA: Recv YRDPOS 129483
17-03-17 23:19:44.438 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:44.438 -07 000000593 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:19:44.458 -07 000000593 INF: Y Motor: After move to 63.232609, error = -0.008488, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:19:44.458 -07 000000593 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:19:44.458 -07 000000593 INF: Y Motor: Moved to 63.2241 after 1447 ms (table move)
17-03-17 23:19:44.458 -07 000000409 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138778 mm (DAC = 30316)
17-03-17 23:19:44.458 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:44.468 -07 000000448 INF: FPGA: Recv ZSGSRD 30897
17-03-17 23:19:44.468 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 23:19:44.468 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:44.468 -07 000000593 INF: FPGA: Recv ZSGSRD 30895
17-03-17 23:19:44.478 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:19:44.478 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:44.478 -07 000000501 INF: FPGA: Recv ZSGSRD 30891
17-03-17 23:19:44.488 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:44.488 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:44.488 -07 000000482 INF: FPGA: Recv ZSGSRD 30894
17-03-17 23:19:44.498 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:44.498 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:44.498 -07 000000618 INF: FPGA: Recv ZSGSRD 30893
17-03-17 23:19:44.508 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:44.508 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:44.508 -07 000000486 INF: FPGA: Recv ZSGSRD 30897
17-03-17 23:19:44.518 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:44.518 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:44.518 -07 000000501 INF: FPGA: Recv ZSGSRD 30897
17-03-17 23:19:44.528 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:44.528 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:44.528 -07 000000482 INF: FPGA: Recv ZSGSRD 30889
17-03-17 23:19:44.538 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:44.538 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:44.538 -07 000000618 INF: FPGA: Recv ZSGSRD 30892
17-03-17 23:19:44.548 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:44.548 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:44.548 -07 000000593 INF: FPGA: Recv ZSGSRD 30889
17-03-17 23:19:44.558 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:44.558 -07 000000409 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:19:44.558 -07 000000486 INF: FPGA: Recv ZPIEZORD 26787
17-03-17 23:19:44.568 -07 000000409 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:44.568 -07 000000409 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.626 V. Piezo Error = -9.0 V.
17-03-17 23:19:44.568 -07 000000409 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.8 um, Read 10 ADC samples: Avg = 30893 (-138.0 uncal um), Error = 0.8 uncal um, Median = 30894 (-138.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30889 (-138.0 uncal um), Max = 30897 (-138.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:19:44.568 -07 000000409 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30893, posNoise = 4, negNoise = 4
17-03-17 23:19:44.568 -07 000000409 INF: Z Motor: After move to -0.138778, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:19:44.568 -07 000000409 INF: Z Motor: Settle wait time = 1451 ms, measure time = 102 ms (allowed 150 ms), total time = 1553 ms
17-03-17 23:19:44.568 -07 000000409 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 23:19:44.618 -07 000000409 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-17 23:19:44.618 -07 000000409 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:19:44.618 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:19:44.618 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:19:44.618 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:19:44.618 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:19:44.618 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:19:44.618 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:19:44.618 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:19:44.618 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:19:44.628 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 23:19:44.628 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:19:44.638 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 23:19:44.638 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-17 23:19:44.648 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:19:44.688 -07 000000415 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:19:44.888 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:19:44.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:19:44.888 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:19:44.888 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2253754584, 0x0, 559484976) start.
17-03-17 23:19:44.928 -07 000000448 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:19:44.928 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-17 23:19:44.928 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 274 ms to get response, and 284 ms overall
17-03-17 23:19:45.008 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2253754584, 0x0, 559484976) end. Duration was 124 ms.
17-03-17 23:19:45.008 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:19:45.018 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 23:19:45.018 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 126 ms.
17-03-17 23:19:45.028 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:19:45.028 -07 000000627 INF: Autofocus start
17-03-17 23:19:45.028 -07 000000627 INF: MeasureProfile start
17-03-17 23:19:45.028 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:19:45.038 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:19:45.038 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:19:45.048 -07 000000627 INF: MeasureProfile done
17-03-17 23:19:45.048 -07 000000627 INF: X=8  Z correction [um]=0.01453479
17-03-17 23:19:45.048 -07 000000627 INF: Autofocus finished
17-03-17 23:19:45.238 -07 000000415 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:19:45.238 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:19:45.238 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22412109375, Z-position -0.138786537706556. ----------
17-03-17 23:19:45.248 -07 000000610 INF: Cycle	74	Tile	5	Exposure Settings		A	472	G	227	T	227	C	472
17-03-17 23:19:45.248 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28832, sync = True, waitForSettling = True)
17-03-17 23:19:45.248 -07 000000610 INF: Z Motor: Moving to -0.131984 mm, started at -0.138787 mm, distance = 6.80 um
17-03-17 23:19:45.248 -07 000000610 INF: FPGA: Xmit ZDACW 28832\n [Z Motor]
17-03-17 23:19:45.248 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 23:19:45.258 -07 000000610 INF: FPGA: 'ZDACW 28832' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:19:45.258 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:19:45.258 -07 000000618 INF: FPGA: Recv ZDACR 28832
17-03-17 23:19:45.268 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:45.268 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:19:45.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:45.418 -07 000000618 INF: FPGA: Recv ZSGSRD 29828
17-03-17 23:19:45.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:19:45.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:45.428 -07 000000593 INF: FPGA: Recv ZSGSRD 29840
17-03-17 23:19:45.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:45.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:45.438 -07 000000627 INF: FPGA: Recv ZSGSRD 29836
17-03-17 23:19:45.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:45.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:45.448 -07 000000482 INF: FPGA: Recv ZSGSRD 29828
17-03-17 23:19:45.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:45.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:45.458 -07 000000501 INF: FPGA: Recv ZSGSRD 29834
17-03-17 23:19:45.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:45.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:45.468 -07 000000409 INF: FPGA: Recv ZSGSRD 29839
17-03-17 23:19:45.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:45.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:45.478 -07 000000618 INF: FPGA: Recv ZSGSRD 29836
17-03-17 23:19:45.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:45.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:45.488 -07 000000482 INF: FPGA: Recv ZSGSRD 29834
17-03-17 23:19:45.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:45.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:45.498 -07 000000501 INF: FPGA: Recv ZSGSRD 29835
17-03-17 23:19:45.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:45.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:45.508 -07 000000482 INF: FPGA: Recv ZSGSRD 29838
17-03-17 23:19:45.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:45.518 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:19:45.518 -07 000000593 INF: FPGA: Recv ZPIEZORD 25426
17-03-17 23:19:45.528 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:45.528 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.399 V. Piezo Error = -9.7 V.
17-03-17 23:19:45.528 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.0 um, Read 10 ADC samples: Avg = 29835 (-131.2 uncal um), Error = 0.8 uncal um, Median = 29836 (-131.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29828 (-131.2 uncal um), Max = 29840 (-131.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 23:19:45.528 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29835, posNoise = 5, negNoise = 7
17-03-17 23:19:45.528 -07 000000610 INF: Z Motor: After move to -0.131984, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:19:45.528 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 23:19:45.528 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:19:45.528 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:19:45.528 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:19:45.528 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:19:45.528 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:19:45.528 -07 000000409 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:19:45.528 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:19:45.528 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:19:45.528 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:19:45.528 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:19:45.528 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:19:45.528 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:19:45.538 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 23:19:45.538 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:19:45.538 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 23:19:45.538 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:19:45.538 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 23:19:45.538 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 23:19:45.548 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 23:19:45.548 -07 000000409 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:19:45.548 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 472 472 227 227 29009 150\n [Camera]
17-03-17 23:19:45.748 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:19:46.218 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 664
17-03-17 23:19:46.218 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 664
17-03-17 23:19:46.218 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:19:46.218 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:19:46.218 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 23:19:46.218 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 664
17-03-17 23:19:46.218 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 664
17-03-17 23:19:46.218 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:19:46.218 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:19:46.218 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 23:19:46.408 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29009 857
17-03-17 23:19:46.558 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1007
17-03-17 23:19:46.598 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 23:19:46.598 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 23:19:46.598 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:19:46.598 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 23:19:46.598 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 23:19:46.598 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:19:46.598 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:19:46.598 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 23:19:46.608 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:19:46.608 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 23:19:46.788 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1234
17-03-17 23:19:46.788 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1234
17-03-17 23:19:46.788 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:19:46.788 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:19:46.788 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-17 23:19:46.788 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1234
17-03-17 23:19:46.788 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1234
17-03-17 23:19:46.788 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:19:46.788 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:19:46.788 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-17 23:19:46.978 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP 1427
17-03-17 23:19:46.978 -07 000000486 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:19:46.978 -07 000000610 INF: FPGA: 'CAMDBLSNAP 472 472 227 227 29009 150' command took 2 ms to send, 1426 ms to get response, and 1434 ms overall
17-03-17 23:19:46.978 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:19:46.978 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22412109375, Z-Position -0.131989721260573. ------
17-03-17 23:19:46.988 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:19:46.988 -07 000000593 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13836 mm
17-03-17 23:19:46.988 -07 000000593 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:19:46.988 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:19:46.988 -07 000000409 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 23:19:46.988 -07 000000409 INF: Y Motor: Moving to 64.0626 mm, started at 63.2241 mm, delta = 0.8385 mm
17-03-17 23:19:46.988 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 30226, sync = True, waitForSettling = False)
17-03-17 23:19:46.988 -07 000000486 INF: Z Motor: Moving to -0.138366 mm, started at -0.131990 mm, distance = -6.38 um
17-03-17 23:19:46.998 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:19:46.998 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:19:46.998 -07 000000547 INF: FPGA: Recv YRDPOS 129483
17-03-17 23:19:47.008 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 23:19:47.008 -07 000000409 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:19:47.008 -07 000000409 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:19:47.008 -07 000000409 INF: Y Motor: Moving 1342 steps-17
17-03-17 23:19:47.008 -07 000000486 INF: FPGA: Xmit ZDACW 30226\n [Z Motor]
17-03-17 23:19:47.008 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 23:19:47.018 -07 000000486 INF: FPGA: 'ZDACW 30226' command took 1 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 23:19:47.018 -07 000000448 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:19:47.028 -07 000000409 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:19:47.038 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:19:47.038 -07 000000462 INF: FPGA: Recv ZDACR 30226
17-03-17 23:19:47.048 -07 000000486 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:19:47.048 -07 000000486 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 23:19:47.058 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:19:47.058 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 73. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1178, R2=1229, Total=2407. Warn if over 250 bubbles per interval.
17-03-17 23:19:47.188 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 23:19:47.188 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 23:19:47.188 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:19:47.188 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 23:19:47.188 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 23:19:47.188 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:19:47.188 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:19:47.198 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 23:19:47.198 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 23:19:47.198 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 23:19:47.218 -07 000000541 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:19:47.218 -07 000000448 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall
17-03-17 23:19:47.398 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 23:19:47.398 -07 000000409 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 23:19:47.448 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:19:47.448 -07 000000627 INF: FPGA: Recv YRDPOS 131189
17-03-17 23:19:47.458 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:19:47.458 -07 000000409 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:19:47.458 -07 000000409 INF: Y Motor: Position error before settling (table move) = -11 encoder counts (-0.005 mm)
17-03-17 23:19:47.458 -07 000000409 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.838 mm, average velocity = 2.107 mm/sec
17-03-17 23:19:48.408 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:19:48.408 -07 000000551 INF: FPGA: Recv YRDPOS 131189
17-03-17 23:19:48.418 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:19:48.418 -07 000000409 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:19:48.438 -07 000000409 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:19:48.438 -07 000000409 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:19:48.438 -07 000000409 INF: Y Motor: Moved to 64.0571 after 1443 ms (table move)
17-03-17 23:19:48.438 -07 000000593 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138366 mm (DAC = 30226)
17-03-17 23:19:48.438 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:48.438 -07 000000429 INF: FPGA: Recv ZSGSRD 30826
17-03-17 23:19:48.448 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:19:48.448 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:48.448 -07 000000415 INF: FPGA: Recv ZSGSRD 30831
17-03-17 23:19:48.458 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:48.458 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:48.458 -07 000000551 INF: FPGA: Recv ZSGSRD 30829
17-03-17 23:19:48.468 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:48.468 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:48.468 -07 000000501 INF: FPGA: Recv ZSGSRD 30836
17-03-17 23:19:48.478 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:48.478 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:48.478 -07 000000618 INF: FPGA: Recv ZSGSRD 30832
17-03-17 23:19:48.488 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:48.488 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:48.488 -07 000000482 INF: FPGA: Recv ZSGSRD 30824
17-03-17 23:19:48.498 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:48.498 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:48.498 -07 000000462 INF: FPGA: Recv ZSGSRD 30830
17-03-17 23:19:48.508 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:48.508 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:48.508 -07 000000547 INF: FPGA: Recv ZSGSRD 30821
17-03-17 23:19:48.518 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:48.518 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:48.518 -07 000000551 INF: FPGA: Recv ZSGSRD 30831
17-03-17 23:19:48.528 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:48.528 -07 000000593 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:48.528 -07 000000482 INF: FPGA: Recv ZSGSRD 30831
17-03-17 23:19:48.538 -07 000000593 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:48.538 -07 000000593 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:19:48.538 -07 000000448 INF: FPGA: Recv ZPIEZORD 26736
17-03-17 23:19:48.548 -07 000000593 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:48.548 -07 000000593 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.612 V. Piezo Error = -9.0 V.
17-03-17 23:19:48.548 -07 000000593 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.4 um, Read 10 ADC samples: Avg = 30829 (-137.6 uncal um), Error = 0.8 uncal um, Median = 30830 (-137.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30821 (-137.5 uncal um), Max = 30836 (-137.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 23:19:48.548 -07 000000593 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30829, posNoise = 7, negNoise = 8
17-03-17 23:19:48.548 -07 000000593 INF: Z Motor: After move to -0.138366, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:19:48.548 -07 000000593 INF: Z Motor: Settle wait time = 1446 ms, measure time = 105 ms (allowed 150 ms), total time = 1551 ms
17-03-17 23:19:48.548 -07 000000593 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 23:19:48.598 -07 000000593 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-17 23:19:48.598 -07 000000593 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:19:48.598 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:19:48.598 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:19:48.598 -07 000000409 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:19:48.598 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:19:48.598 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:19:48.598 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:19:48.598 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 23:19:48.598 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:19:48.608 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:19:48.608 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:19:48.608 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 23:19:48.608 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 23:19:48.618 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:19:48.668 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:19:48.858 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:19:48.858 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:19:48.858 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:19:48.858 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2268430664, 0x0, 559484976) start.
17-03-17 23:19:48.898 -07 000000541 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:19:48.898 -07 000000459 INF: FPGA: Recv CAMSNAP
17-03-17 23:19:48.898 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 285 ms overall
17-03-17 23:19:48.978 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 74, FrontChillerTemperature: 3.975845,
17-03-17 23:19:48.988 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2268430664, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 23:19:48.988 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:19:48.988 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 23:19:48.988 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 23:19:49.098 -07 000000541 INF: Autofocus start
17-03-17 23:19:49.098 -07 000000541 INF: MeasureProfile start
17-03-17 23:19:49.098 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:19:49.098 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:19:49.108 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:19:49.108 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:19:49.108 -07 000000541 INF: MeasureProfile done
17-03-17 23:19:49.108 -07 000000541 INF: X=16  Z correction [um]=0.0530179
17-03-17 23:19:49.108 -07 000000541 INF: Autofocus finished
17-03-17 23:19:49.308 -07 000000593 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:19:49.308 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:19:49.308 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.138375388129484. ----------
17-03-17 23:19:49.318 -07 000000610 INF: Cycle	74	Tile	6	Exposure Settings		A	472	G	227	T	227	C	472
17-03-17 23:19:49.318 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28750, sync = True, waitForSettling = True)
17-03-17 23:19:49.318 -07 000000610 INF: Z Motor: Moving to -0.131609 mm, started at -0.138375 mm, distance = 6.77 um
17-03-17 23:19:49.318 -07 000000610 INF: FPGA: Xmit ZDACW 28750\n [Z Motor]
17-03-17 23:19:49.318 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 23:19:49.328 -07 000000610 INF: FPGA: 'ZDACW 28750' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:19:49.328 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:19:49.328 -07 000000429 INF: FPGA: Recv ZDACR 28750
17-03-17 23:19:49.338 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:49.338 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:19:49.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:49.488 -07 000000561 INF: FPGA: Recv ZSGSRD 29779
17-03-17 23:19:49.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:19:49.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:49.498 -07 000000415 INF: FPGA: Recv ZSGSRD 29773
17-03-17 23:19:49.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:49.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:49.508 -07 000000561 INF: FPGA: Recv ZSGSRD 29774
17-03-17 23:19:49.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:49.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:49.518 -07 000000415 INF: FPGA: Recv ZSGSRD 29775
17-03-17 23:19:49.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:49.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:49.528 -07 000000459 INF: FPGA: Recv ZSGSRD 29777
17-03-17 23:19:49.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:49.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:49.538 -07 000000551 INF: FPGA: Recv ZSGSRD 29777
17-03-17 23:19:49.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:49.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:49.548 -07 000000459 INF: FPGA: Recv ZSGSRD 29776
17-03-17 23:19:49.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:49.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:49.558 -07 000000551 INF: FPGA: Recv ZSGSRD 29779
17-03-17 23:19:49.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:49.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:49.568 -07 000000459 INF: FPGA: Recv ZSGSRD 29778
17-03-17 23:19:49.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:49.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:49.578 -07 000000618 INF: FPGA: Recv ZSGSRD 29776
17-03-17 23:19:49.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:49.588 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:19:49.588 -07 000000429 INF: FPGA: Recv ZPIEZORD 25364
17-03-17 23:19:49.598 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:49.598 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.387 V. Piezo Error = -9.7 V.
17-03-17 23:19:49.598 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.6 um, Read 10 ADC samples: Avg = 29776 (-130.8 uncal um), Error = 0.8 uncal um, Median = 29776 (-130.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29773 (-130.8 uncal um), Max = 29779 (-130.8 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 23:19:49.598 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29776, posNoise = 3, negNoise = 3
17-03-17 23:19:49.598 -07 000000610 INF: Z Motor: After move to -0.131609, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:19:49.598 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 23:19:49.598 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:19:49.598 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:19:49.598 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:19:49.598 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:19:49.598 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:19:49.598 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:19:49.598 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:19:49.598 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:19:49.598 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:19:49.598 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:19:49.598 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:19:49.598 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:19:49.608 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 23:19:49.608 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:19:49.608 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 23:19:49.608 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:19:49.618 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 23:19:49.618 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 23:19:49.618 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 23:19:49.618 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:19:49.618 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 472 472 227 227 28927 150\n [Camera]
17-03-17 23:19:49.818 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:19:50.288 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 664
17-03-17 23:19:50.288 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 664
17-03-17 23:19:50.288 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:19:50.288 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:19:50.288 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-17 23:19:50.288 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 664
17-03-17 23:19:50.288 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 664
17-03-17 23:19:50.298 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:19:50.298 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:19:50.298 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) start.
17-03-17 23:19:50.478 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28927 857
17-03-17 23:19:50.628 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1007
17-03-17 23:19:50.668 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 23:19:50.668 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 23:19:50.668 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:19:50.668 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 23:19:50.668 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 23:19:50.668 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:19:50.678 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 23:19:50.678 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 23:19:50.678 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 23:19:50.678 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 23:19:50.858 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1234
17-03-17 23:19:50.858 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1234
17-03-17 23:19:50.858 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:19:50.998 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1234
17-03-17 23:19:50.998 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1234
17-03-17 23:19:50.998 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:19:50.998 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:19:50.998 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) start.
17-03-17 23:19:51.008 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:19:51.008 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 23:19:51.048 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1426
17-03-17 23:19:51.048 -07 000000448 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:19:51.048 -07 000000610 INF: FPGA: 'CAMDBLSNAP 472 472 227 227 28927 150' command took 2 ms to send, 1428 ms to get response, and 1433 ms overall
17-03-17 23:19:51.058 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:19:51.058 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05712890625, Z-Position -0.131610692744209. ------
17-03-17 23:19:51.058 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:19:51.058 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13796 mm
17-03-17 23:19:51.058 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:19:51.058 -07 000000459 INF: Z Motor: Entering MoveAbsStepped (DAC = 30138, sync = True, waitForSettling = False)
17-03-17 23:19:51.058 -07 000000459 INF: Z Motor: Moving to -0.137963 mm, started at -0.131611 mm, distance = -6.35 um
17-03-17 23:19:51.058 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:19:51.058 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 23:19:51.058 -07 000000462 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-17 23:19:51.068 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:19:51.068 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:19:51.068 -07 000000576 INF: FPGA: Recv YRDPOS 131189
17-03-17 23:19:51.078 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 23:19:51.078 -07 000000462 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:19:51.078 -07 000000462 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:19:51.078 -07 000000462 INF: Y Motor: Moving 1337 steps-11
17-03-17 23:19:51.078 -07 000000459 INF: FPGA: Xmit ZDACW 30138\n [Z Motor]
17-03-17 23:19:51.078 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 23:19:51.088 -07 000000551 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:19:51.088 -07 000000459 INF: FPGA: 'ZDACW 30138' command took 1 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 23:19:51.098 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:19:51.108 -07 000000459 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:19:51.108 -07 000000486 INF: FPGA: Recv ZDACR 30138
17-03-17 23:19:51.118 -07 000000459 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 23:19:51.118 -07 000000459 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 23:19:51.288 -07 000000415 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:19:51.288 -07 000000551 INF: FPGA: 'FOCMRRFOC' command took 3 ms to send, 195 ms to get response, and 225 ms overall
17-03-17 23:19:51.398 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 23:19:51.398 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 23:19:51.398 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:19:51.398 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 23:19:51.398 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 23:19:51.398 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:19:51.408 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:19:51.408 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:19:51.408 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 546 ms.
17-03-17 23:19:51.408 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 23:19:51.478 -07 000000486 INF: FPGA: Recv YMVTILE
17-03-17 23:19:51.478 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 372 ms to get response, and 401 ms overall
17-03-17 23:19:51.518 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:19:51.518 -07 000000429 INF: FPGA: Recv YRDPOS 132872
17-03-17 23:19:51.528 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:51.528 -07 000000462 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:19:51.528 -07 000000462 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 23:19:51.528 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 401 ms, distance = 0.835 mm, average velocity = 2.083 mm/sec
17-03-17 23:19:52.058 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:19:52.058 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 73. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1178, R2=1229, Total=2407. Warn if over 250 bubbles per interval.
17-03-17 23:19:52.478 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:19:52.478 -07 000000551 INF: FPGA: Recv YRDPOS 132872
17-03-17 23:19:52.488 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:19:52.488 -07 000000462 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:19:52.508 -07 000000462 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:19:52.508 -07 000000462 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:19:52.508 -07 000000462 INF: Y Motor: Moved to 64.8789 after 1447 ms (table move)
17-03-17 23:19:52.508 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137963 mm (DAC = 30138)
17-03-17 23:19:52.508 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:52.518 -07 000000462 INF: FPGA: Recv ZSGSRD 30763
17-03-17 23:19:52.518 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 23:19:52.518 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:52.518 -07 000000462 INF: FPGA: Recv ZSGSRD 30768
17-03-17 23:19:52.528 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:19:52.528 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:52.528 -07 000000462 INF: FPGA: Recv ZSGSRD 30770
17-03-17 23:19:52.538 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:52.538 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:52.538 -07 000000618 INF: FPGA: Recv ZSGSRD 30765
17-03-17 23:19:52.548 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:52.548 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:52.548 -07 000000459 INF: FPGA: Recv ZSGSRD 30770
17-03-17 23:19:52.558 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:19:52.558 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:52.558 -07 000000459 INF: FPGA: Recv ZSGSRD 30759
17-03-17 23:19:52.568 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:52.568 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:52.568 -07 000000459 INF: FPGA: Recv ZSGSRD 30761
17-03-17 23:19:52.578 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:52.578 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:52.578 -07 000000459 INF: FPGA: Recv ZSGSRD 30769
17-03-17 23:19:52.588 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:52.588 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:52.588 -07 000000459 INF: FPGA: Recv ZSGSRD 30767
17-03-17 23:19:52.598 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:52.598 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:52.598 -07 000000459 INF: FPGA: Recv ZSGSRD 30763
17-03-17 23:19:52.608 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:52.608 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:19:52.608 -07 000000459 INF: FPGA: Recv ZPIEZORD 26656
17-03-17 23:19:52.618 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:52.618 -07 000000561 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.599 V. Piezo Error = -9.0 V.
17-03-17 23:19:52.618 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.0 um, Read 10 ADC samples: Avg = 30766 (-137.2 uncal um), Error = 0.8 uncal um, Median = 30766 (-137.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30759 (-137.1 uncal um), Max = 30770 (-137.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 23:19:52.618 -07 000000561 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30766, posNoise = 4, negNoise = 7
17-03-17 23:19:52.618 -07 000000561 INF: Z Motor: After move to -0.137963, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:19:52.618 -07 000000561 INF: Z Motor: Settle wait time = 1451 ms, measure time = 102 ms (allowed 150 ms), total time = 1553 ms
17-03-17 23:19:52.618 -07 000000561 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 23:19:52.668 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms
17-03-17 23:19:52.668 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:19:52.668 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:19:52.668 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:19:52.668 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:19:52.668 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:19:52.668 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:19:52.668 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:19:52.668 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 23:19:52.668 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:19:52.678 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:19:52.678 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:19:52.688 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 23:19:52.688 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 23:19:52.688 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:19:52.738 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:19:52.928 -07 000000448 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:19:52.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:19:52.938 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:19:52.938 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-17 23:19:52.968 -07 000000576 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:19:52.978 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-17 23:19:52.978 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 287 ms overall
17-03-17 23:19:53.058 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 23:19:53.058 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:19:53.058 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 23:19:53.058 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 23:19:53.078 -07 000000576 INF: Autofocus start
17-03-17 23:19:53.078 -07 000000576 INF: MeasureProfile start
17-03-17 23:19:53.078 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:19:53.078 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:19:53.088 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:19:53.088 -07 000000486 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:19:53.088 -07 000000576 INF: MeasureProfile done
17-03-17 23:19:53.088 -07 000000576 INF: X=64  Z correction [um]=0.2839165
17-03-17 23:19:53.098 -07 000000576 INF: Autofocus finished
17-03-17 23:19:53.288 -07 000000551 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:19:53.288 -07 000000486 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:19:53.288 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.137970662764553. ----------
17-03-17 23:19:53.288 -07 000000610 INF: Cycle	74	Tile	7	Exposure Settings		A	472	G	227	T	227	C	472
17-03-17 23:19:53.298 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28713, sync = True, waitForSettling = True)
17-03-17 23:19:53.298 -07 000000610 INF: Z Motor: Moving to -0.131440 mm, started at -0.137971 mm, distance = 6.53 um
17-03-17 23:19:53.298 -07 000000610 INF: FPGA: Xmit ZDACW 28713\n [Z Motor]
17-03-17 23:19:53.298 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 23:19:53.308 -07 000000610 INF: FPGA: 'ZDACW 28713' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:53.308 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:19:53.308 -07 000000429 INF: FPGA: Recv ZDACR 28713
17-03-17 23:19:53.318 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:53.318 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:19:53.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:53.468 -07 000000462 INF: FPGA: Recv ZSGSRD 29751
17-03-17 23:19:53.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:53.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:53.478 -07 000000415 INF: FPGA: Recv ZSGSRD 29753
17-03-17 23:19:53.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:53.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:53.488 -07 000000576 INF: FPGA: Recv ZSGSRD 29757
17-03-17 23:19:53.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:53.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:53.498 -07 000000459 INF: FPGA: Recv ZSGSRD 29745
17-03-17 23:19:53.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:53.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:53.508 -07 000000551 INF: FPGA: Recv ZSGSRD 29748
17-03-17 23:19:53.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:53.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:53.518 -07 000000541 INF: FPGA: Recv ZSGSRD 29755
17-03-17 23:19:53.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:53.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:53.528 -07 000000459 INF: FPGA: Recv ZSGSRD 29753
17-03-17 23:19:53.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:53.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:53.538 -07 000000429 INF: FPGA: Recv ZSGSRD 29751
17-03-17 23:19:53.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:53.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:53.548 -07 000000448 INF: FPGA: Recv ZSGSRD 29747
17-03-17 23:19:53.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:53.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:53.558 -07 000000541 INF: FPGA: Recv ZSGSRD 29748
17-03-17 23:19:53.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:53.568 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:19:53.568 -07 000000576 INF: FPGA: Recv ZPIEZORD 25334
17-03-17 23:19:53.578 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:53.578 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.381 V. Piezo Error = -9.7 V.
17-03-17 23:19:53.578 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.4 um, Read 10 ADC samples: Avg = 29751 (-130.7 uncal um), Error = 0.8 uncal um, Median = 29751 (-130.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29745 (-130.6 uncal um), Max = 29757 (-130.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:19:53.578 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29751, posNoise = 6, negNoise = 6
17-03-17 23:19:53.578 -07 000000610 INF: Z Motor: After move to -0.131440, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:19:53.578 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 23:19:53.578 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:19:53.578 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:19:53.578 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:19:53.578 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:19:53.578 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:19:53.578 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:19:53.578 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:19:53.578 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:19:53.578 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 23:19:53.578 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:19:53.578 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:19:53.578 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:19:53.588 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 23:19:53.588 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:19:53.588 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:19:53.588 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:19:53.588 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 23:19:53.588 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:19:53.588 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 23:19:53.598 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 23:19:53.598 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 472 472 227 227 28890 150\n [Camera]
17-03-17 23:19:53.798 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:19:54.268 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 664
17-03-17 23:19:54.268 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 664
17-03-17 23:19:54.268 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:19:54.268 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 664
17-03-17 23:19:54.268 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 664
17-03-17 23:19:54.268 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:19:54.278 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:19:54.278 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 23:19:54.278 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:19:54.278 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 23:19:54.338 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 74, FrontChillerTemperature: 3.94992,
17-03-17 23:19:54.458 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28890 857
17-03-17 23:19:54.608 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1007
17-03-17 23:19:54.648 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 369 ms.
17-03-17 23:19:54.648 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 369 ms.
17-03-17 23:19:54.648 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:19:54.648 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 23:19:54.648 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 23:19:54.648 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:19:54.658 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 23:19:54.658 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 23:19:54.658 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 23:19:54.668 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 23:19:54.838 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1234
17-03-17 23:19:54.838 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1234
17-03-17 23:19:54.838 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:19:54.838 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1234
17-03-17 23:19:54.838 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1234
17-03-17 23:19:54.838 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:19:54.838 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:19:54.838 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2468220576, 0x0, 418435064) start.
17-03-17 23:19:54.848 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:19:54.848 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 23:19:55.028 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP 1427
17-03-17 23:19:55.028 -07 000000551 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:19:55.028 -07 000000610 INF: FPGA: 'CAMDBLSNAP 472 472 227 227 28890 150' command took 2 ms to send, 1425 ms to get response, and 1434 ms overall
17-03-17 23:19:55.028 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:19:55.028 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87890625, Z-Position -0.131450087440665. ------
17-03-17 23:19:55.038 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:19:55.038 -07 000000541 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13805 mm
17-03-17 23:19:55.038 -07 000000541 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:19:55.038 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:19:55.038 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 30157, sync = True, waitForSettling = False)
17-03-17 23:19:55.038 -07 000000551 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 23:19:55.038 -07 000000551 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm
17-03-17 23:19:55.038 -07 000000501 INF: Z Motor: Moving to -0.138050 mm, started at -0.131450 mm, distance = -6.60 um
17-03-17 23:19:55.048 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:19:55.048 -07 000000501 INF: FPGA: Xmit ZDACW 30157\n [Z Motor]
17-03-17 23:19:55.048 -07 000000547 INF: FPGA: Recv ZDACW
17-03-17 23:19:55.058 -07 000000501 INF: FPGA: 'ZDACW 30157' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:19:55.058 -07 000000429 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:19:55.068 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:19:55.068 -07 000000627 INF: FPGA: Recv YRDPOS 132872
17-03-17 23:19:55.078 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:19:55.078 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 23:19:55.078 -07 000000551 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:19:55.078 -07 000000551 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:19:55.078 -07 000000551 INF: Y Motor: Moving 1350 steps-28
17-03-17 23:19:55.078 -07 000000462 INF: FPGA: Recv ZDACR 30157
17-03-17 23:19:55.088 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:19:55.088 -07 000000501 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-17 23:19:55.088 -07 000000551 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:19:55.238 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 23:19:55.238 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 23:19:55.238 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:19:55.238 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2468220576, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 23:19:55.238 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 23:19:55.238 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:19:55.238 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:19:55.238 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 23:19:55.238 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 23:19:55.248 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 23:19:55.258 -07 000000482 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:19:55.258 -07 000000429 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 23:19:55.458 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 23:19:55.458 -07 000000551 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 23:19:55.498 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:19:55.508 -07 000000482 INF: FPGA: Recv YRDPOS 134582
17-03-17 23:19:55.508 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 23:19:55.508 -07 000000551 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:19:55.508 -07 000000551 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 23:19:55.508 -07 000000551 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.844 mm, average velocity = 2.180 mm/sec
17-03-17 23:19:56.458 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:19:56.458 -07 000000462 INF: FPGA: Recv YRDPOS 134583
17-03-17 23:19:56.468 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:56.468 -07 000000551 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:19:56.488 -07 000000551 INF: Y Motor: After move to 65.722610, error = -0.008255, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:19:56.488 -07 000000551 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 23:19:56.488 -07 000000551 INF: Y Motor: Moved to 65.7144 after 1448 ms (table move)
17-03-17 23:19:56.498 -07 000000541 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138050 mm (DAC = 30157)
17-03-17 23:19:56.498 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:56.498 -07 000000547 INF: FPGA: Recv ZSGSRD 30784
17-03-17 23:19:56.508 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:56.508 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:56.508 -07 000000459 INF: FPGA: Recv ZSGSRD 30780
17-03-17 23:19:56.518 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:56.518 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:56.518 -07 000000551 INF: FPGA: Recv ZSGSRD 30781
17-03-17 23:19:56.528 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:56.528 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:56.528 -07 000000459 INF: FPGA: Recv ZSGSRD 30789
17-03-17 23:19:56.538 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:56.538 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:56.538 -07 000000551 INF: FPGA: Recv ZSGSRD 30780
17-03-17 23:19:56.548 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:56.548 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:56.548 -07 000000482 INF: FPGA: Recv ZSGSRD 30781
17-03-17 23:19:56.558 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:56.558 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:56.558 -07 000000551 INF: FPGA: Recv ZSGSRD 30782
17-03-17 23:19:56.568 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:56.568 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:56.568 -07 000000551 INF: FPGA: Recv ZSGSRD 30772
17-03-17 23:19:56.578 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:56.578 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:56.578 -07 000000482 INF: FPGA: Recv ZSGSRD 30777
17-03-17 23:19:56.588 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:56.588 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:56.588 -07 000000482 INF: FPGA: Recv ZSGSRD 30781
17-03-17 23:19:56.598 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:56.598 -07 000000541 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:19:56.598 -07 000000551 INF: FPGA: Recv ZPIEZORD 26670
17-03-17 23:19:56.608 -07 000000541 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:56.608 -07 000000541 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.602 V. Piezo Error = -9.0 V.
17-03-17 23:19:56.608 -07 000000541 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.0 um, Read 10 ADC samples: Avg = 30781 (-137.3 uncal um), Error = 0.8 uncal um, Median = 30781 (-137.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 30772 (-137.2 uncal um), Max = 30789 (-137.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 23:19:56.608 -07 000000541 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30781, posNoise = 8, negNoise = 9
17-03-17 23:19:56.608 -07 000000541 INF: Z Motor: After move to -0.138050, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:19:56.608 -07 000000541 INF: Z Motor: Settle wait time = 1451 ms, measure time = 109 ms (allowed 150 ms), total time = 1560 ms
17-03-17 23:19:56.608 -07 000000541 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 23:19:56.658 -07 000000541 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1618 ms
17-03-17 23:19:56.658 -07 000000541 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:19:56.658 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:19:56.658 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:19:56.658 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:19:56.658 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:19:56.658 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:19:56.658 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:19:56.658 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:19:56.658 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:19:56.668 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 23:19:56.668 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:19:56.678 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 23:19:56.678 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 23:19:56.678 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:19:56.728 -07 000000482 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:19:56.928 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:19:56.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:19:56.928 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:19:56.928 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-17 23:19:56.968 -07 000000478 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:19:56.968 -07 000000482 INF: FPGA: Recv CAMSNAP
17-03-17 23:19:56.968 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 23:19:57.058 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 23:19:57.058 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:19:57.058 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:19:57.058 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 23:19:57.058 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:19:57.058 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 73. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1178, R2=1229, Total=2407. Warn if over 250 bubbles per interval.
17-03-17 23:19:57.068 -07 000000547 INF: Autofocus start
17-03-17 23:19:57.068 -07 000000547 INF: MeasureProfile start
17-03-17 23:19:57.068 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:19:57.068 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:19:57.078 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:19:57.078 -07 000000448 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:19:57.078 -07 000000547 INF: MeasureProfile done
17-03-17 23:19:57.078 -07 000000547 INF: X=32  Z correction [um]=0.1299841
17-03-17 23:19:57.078 -07 000000547 INF: Autofocus finished
17-03-17 23:19:57.278 -07 000000541 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:19:57.278 -07 000000448 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-17 23:19:57.288 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71435546875, Z-position -0.138067025946679. ----------
17-03-17 23:19:57.288 -07 000000610 INF: Cycle	74	Tile	8	Exposure Settings		A	472	G	227	T	227	C	472
17-03-17 23:19:57.288 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28698, sync = True, waitForSettling = True)
17-03-17 23:19:57.288 -07 000000610 INF: Z Motor: Moving to -0.131371 mm, started at -0.138067 mm, distance = 6.70 um
17-03-17 23:19:57.288 -07 000000610 INF: FPGA: Xmit ZDACW 28698\n [Z Motor]
17-03-17 23:19:57.288 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 23:19:57.298 -07 000000610 INF: FPGA: 'ZDACW 28698' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:19:57.298 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:19:57.298 -07 000000627 INF: FPGA: Recv ZDACR 28698
17-03-17 23:19:57.308 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:57.308 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:19:57.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:57.458 -07 000000627 INF: FPGA: Recv ZSGSRD 29738
17-03-17 23:19:57.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:57.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:57.468 -07 000000482 INF: FPGA: Recv ZSGSRD 29740
17-03-17 23:19:57.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:57.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:57.478 -07 000000501 INF: FPGA: Recv ZSGSRD 29736
17-03-17 23:19:57.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:57.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:57.488 -07 000000482 INF: FPGA: Recv ZSGSRD 29735
17-03-17 23:19:57.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:57.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:57.498 -07 000000627 INF: FPGA: Recv ZSGSRD 29738
17-03-17 23:19:57.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:57.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:57.508 -07 000000448 INF: FPGA: Recv ZSGSRD 29742
17-03-17 23:19:57.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:57.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:57.518 -07 000000501 INF: FPGA: Recv ZSGSRD 29748
17-03-17 23:19:57.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:57.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:57.528 -07 000000627 INF: FPGA: Recv ZSGSRD 29738
17-03-17 23:19:57.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:57.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:57.538 -07 000000448 INF: FPGA: Recv ZSGSRD 29740
17-03-17 23:19:57.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:57.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:19:57.548 -07 000000482 INF: FPGA: Recv ZSGSRD 29740
17-03-17 23:19:57.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:57.558 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:19:57.558 -07 000000448 INF: FPGA: Recv ZPIEZORD 25312
17-03-17 23:19:57.568 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:19:57.568 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.379 V. Piezo Error = -9.7 V.
17-03-17 23:19:57.568 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.4 um, Read 10 ADC samples: Avg = 29740 (-130.6 uncal um), Error = 0.8 uncal um, Median = 29739 (-130.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29735 (-130.6 uncal um), Max = 29748 (-130.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:19:57.568 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29740, posNoise = 8, negNoise = 5
17-03-17 23:19:57.568 -07 000000610 INF: Z Motor: After move to -0.131371, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:19:57.568 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 23:19:57.568 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:19:57.568 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:19:57.568 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:19:57.568 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:19:57.568 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:19:57.568 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:19:57.568 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:19:57.568 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:19:57.568 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:19:57.568 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:19:57.568 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:19:57.568 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:19:57.578 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:19:57.578 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:19:57.578 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:19:57.578 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:19:57.588 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 23:19:57.588 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:19:57.588 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 23:19:57.588 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:19:57.588 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 472 472 227 227 28874 150\n [Camera]
17-03-17 23:19:57.788 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:19:58.258 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 664
17-03-17 23:19:58.258 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 664
17-03-17 23:19:58.258 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 664
17-03-17 23:19:58.258 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 664
17-03-17 23:19:58.258 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:19:58.258 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:19:58.268 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2503642840, 0x0, 391868352) start.
17-03-17 23:19:58.268 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:19:58.268 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:19:58.268 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 23:19:58.448 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28874 857
17-03-17 23:19:58.598 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1008
17-03-17 23:19:58.648 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 23:19:58.648 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 23:19:58.648 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:19:58.648 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2503642840, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 23:19:58.648 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 23:19:58.648 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:19:58.648 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:19:58.648 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:19:58.648 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 23:19:58.658 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 23:19:58.828 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1234
17-03-17 23:19:58.828 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1234
17-03-17 23:19:58.828 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:19:58.948 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1234
17-03-17 23:19:58.948 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1234
17-03-17 23:19:58.948 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:19:58.948 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:19:58.948 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2468220576, 0x0, 418435064) start.
17-03-17 23:19:58.948 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:19:58.948 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 23:19:59.018 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1427
17-03-17 23:19:59.018 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:19:59.018 -07 000000610 INF: FPGA: 'CAMDBLSNAP 472 472 227 227 28874 150' command took 2 ms to send, 1427 ms to get response, and 1434 ms overall
17-03-17 23:19:59.028 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:19:59.028 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71435546875, Z-Position -0.131379421107106. ------
17-03-17 23:19:59.028 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:19:59.028 -07 000000551 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13777 mm
17-03-17 23:19:59.028 -07 000000551 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:19:59.028 -07 000000462 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 23:19:59.028 -07 000000462 INF: Y Motor: Moving to 66.5526 mm, started at 65.7144 mm, delta = 0.8382 mm
17-03-17 23:19:59.038 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:19:59.328 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2468220576, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 23:19:59.328 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 23:19:59.328 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:19:59.328 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:19:59.338 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 23:19:59.338 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 23:19:59.338 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:19:59.338 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 23:19:59.338 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:19:59.338 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 511 ms.
17-03-17 23:19:59.358 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:19:59.358 -07 000000501 INF: FPGA: Recv YRDPOS 134583
17-03-17 23:19:59.358 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 310 ms to get response, and 324 ms overall
17-03-17 23:19:59.358 -07 000000462 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:19:59.358 -07 000000462 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:19:59.358 -07 000000462 INF: Y Motor: Moving 1341 steps-18
17-03-17 23:19:59.358 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 30095, sync = True, waitForSettling = False)
17-03-17 23:19:59.358 -07 000000627 INF: Z Motor: Moving to -0.137766 mm, started at -0.131379 mm, distance = -6.39 um
17-03-17 23:19:59.358 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 320 ms to get response, and 327 ms overall
17-03-17 23:19:59.358 -07 000000462 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:19:59.368 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:19:59.378 -07 000000627 INF: FPGA: Xmit ZDACW 30095\n [Z Motor]
17-03-17 23:19:59.378 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 23:19:59.388 -07 000000627 INF: FPGA: 'ZDACW 30095' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 23:19:59.398 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:19:59.398 -07 000000501 INF: FPGA: Recv ZDACR 30095
17-03-17 23:19:59.408 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:19:59.408 -07 000000627 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 23:19:59.568 -07 000000627 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:19:59.568 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 211 ms overall
17-03-17 23:19:59.708 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 74, FrontChillerTemperature: 3.981281,
17-03-17 23:19:59.738 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 23:19:59.738 -07 000000462 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 378 ms overall
17-03-17 23:19:59.778 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:19:59.778 -07 000000627 INF: FPGA: Recv YRDPOS 136272
17-03-17 23:19:59.788 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:19:59.788 -07 000000462 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:19:59.788 -07 000000462 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 23:19:59.788 -07 000000462 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 379 ms, distance = 0.838 mm, average velocity = 2.212 mm/sec
17-03-17 23:20:00.738 -07 000000462 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:20:00.738 -07 000000409 INF: FPGA: Recv YRDPOS 136272
17-03-17 23:20:00.748 -07 000000462 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:20:00.748 -07 000000462 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:20:00.768 -07 000000462 INF: Y Motor: After move to 66.552605, error = -0.013542, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:20:00.768 -07 000000462 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:20:00.768 -07 000000462 INF: Y Motor: Moved to 66.5391 after 1740 ms (table move)
17-03-17 23:20:00.778 -07 000000551 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137766 mm (DAC = 30095)
17-03-17 23:20:00.778 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:00.778 -07 000000627 INF: FPGA: Recv ZSGSRD 30732
17-03-17 23:20:00.788 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:00.788 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:00.788 -07 000000409 INF: FPGA: Recv ZSGSRD 30738
17-03-17 23:20:00.798 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:00.798 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:00.798 -07 000000618 INF: FPGA: Recv ZSGSRD 30732
17-03-17 23:20:00.808 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:00.808 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:00.808 -07 000000409 INF: FPGA: Recv ZSGSRD 30731
17-03-17 23:20:00.818 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:00.818 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:00.818 -07 000000462 INF: FPGA: Recv ZSGSRD 30730
17-03-17 23:20:00.828 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:00.828 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:00.828 -07 000000627 INF: FPGA: Recv ZSGSRD 30734
17-03-17 23:20:00.838 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:00.838 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:00.838 -07 000000576 INF: FPGA: Recv ZSGSRD 30738
17-03-17 23:20:00.848 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:00.848 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:00.848 -07 000000561 INF: FPGA: Recv ZSGSRD 30738
17-03-17 23:20:00.858 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:00.858 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:00.858 -07 000000409 INF: FPGA: Recv ZSGSRD 30734
17-03-17 23:20:00.868 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:00.868 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:00.868 -07 000000462 INF: FPGA: Recv ZSGSRD 30739
17-03-17 23:20:00.878 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:00.878 -07 000000551 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:20:00.878 -07 000000409 INF: FPGA: Recv ZPIEZORD 26633
17-03-17 23:20:00.888 -07 000000551 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:00.888 -07 000000551 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.592 V. Piezo Error = -9.0 V.
17-03-17 23:20:00.888 -07 000000551 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.8 um, Read 10 ADC samples: Avg = 30735 (-137.0 uncal um), Error = 0.8 uncal um, Median = 30734 (-137.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30730 (-136.9 uncal um), Max = 30739 (-137.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:20:00.888 -07 000000551 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30735, posNoise = 4, negNoise = 5
17-03-17 23:20:00.888 -07 000000551 INF: Z Motor: After move to -0.137766, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:20:00.888 -07 000000551 INF: Z Motor: Settle wait time = 1419 ms, measure time = 110 ms (allowed 150 ms), total time = 1529 ms
17-03-17 23:20:00.888 -07 000000551 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 23:20:00.928 -07 000000551 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1896 ms
17-03-17 23:20:00.928 -07 000000551 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:20:00.928 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:20:00.928 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:20:00.928 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:20:00.928 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:20:00.928 -07 000000409 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:20:00.928 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:20:00.928 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:20:00.928 -07 000000409 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:20:00.938 -07 000000409 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:20:00.938 -07 000000409 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:20:00.948 -07 000000409 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 23:20:00.948 -07 000000409 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 23:20:00.948 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:20:00.998 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:20:01.188 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:20:01.188 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:20:01.198 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:20:01.198 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-17 23:20:01.228 -07 000000593 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:20:01.228 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-17 23:20:01.228 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 284 ms overall
17-03-17 23:20:01.308 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 23:20:01.308 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:20:01.308 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:20:01.308 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-17 23:20:01.338 -07 000000618 INF: Autofocus start
17-03-17 23:20:01.338 -07 000000618 INF: MeasureProfile start
17-03-17 23:20:01.338 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:20:01.338 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:20:01.348 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:20:01.348 -07 000000627 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:20:01.348 -07 000000618 INF: MeasureProfile done
17-03-17 23:20:01.348 -07 000000618 INF: X=-20  Z correction [um]=-0.1007593
17-03-17 23:20:01.348 -07 000000618 INF: Autofocus finished
17-03-17 23:20:01.548 -07 000000551 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:20:01.548 -07 000000627 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:20:01.548 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5390625, Z-position -0.137771512188158. ----------
17-03-17 23:20:01.558 -07 000000610 INF: Cycle	74	Tile	9	Exposure Settings		A	472	G	227	T	227	C	472
17-03-17 23:20:01.558 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28586, sync = True, waitForSettling = True)
17-03-17 23:20:01.558 -07 000000610 INF: Z Motor: Moving to -0.130858 mm, started at -0.137772 mm, distance = 6.91 um
17-03-17 23:20:01.558 -07 000000610 INF: FPGA: Xmit ZDACW 28586\n [Z Motor]
17-03-17 23:20:01.558 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 23:20:01.568 -07 000000610 INF: FPGA: 'ZDACW 28586' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:20:01.568 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:20:01.568 -07 000000501 INF: FPGA: Recv ZDACR 28586
17-03-17 23:20:01.578 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:01.578 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:20:01.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:01.728 -07 000000618 INF: FPGA: Recv ZSGSRD 29662
17-03-17 23:20:01.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:20:01.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:01.738 -07 000000561 INF: FPGA: Recv ZSGSRD 29659
17-03-17 23:20:01.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:01.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:01.748 -07 000000593 INF: FPGA: Recv ZSGSRD 29658
17-03-17 23:20:01.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:01.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:01.758 -07 000000561 INF: FPGA: Recv ZSGSRD 29663
17-03-17 23:20:01.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:01.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:01.768 -07 000000551 INF: FPGA: Recv ZSGSRD 29660
17-03-17 23:20:01.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:01.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:01.778 -07 000000409 INF: FPGA: Recv ZSGSRD 29655
17-03-17 23:20:01.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:01.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:01.788 -07 000000593 INF: FPGA: Recv ZSGSRD 29661
17-03-17 23:20:01.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:01.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:01.798 -07 000000409 INF: FPGA: Recv ZSGSRD 29663
17-03-17 23:20:01.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:01.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:01.808 -07 000000561 INF: FPGA: Recv ZSGSRD 29661
17-03-17 23:20:01.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:01.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:01.818 -07 000000593 INF: FPGA: Recv ZSGSRD 29659
17-03-17 23:20:01.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:01.828 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:20:01.828 -07 000000561 INF: FPGA: Recv ZPIEZORD 25221
17-03-17 23:20:01.838 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:01.838 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.362 V. Piezo Error = -9.7 V.
17-03-17 23:20:01.838 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.9 um, Read 10 ADC samples: Avg = 29660 (-130.1 uncal um), Error = 0.8 uncal um, Median = 29660 (-130.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29655 (-130.1 uncal um), Max = 29663 (-130.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:20:01.838 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29660, posNoise = 3, negNoise = 5
17-03-17 23:20:01.838 -07 000000610 INF: Z Motor: After move to -0.130858, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:20:01.838 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 23:20:01.838 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:20:01.838 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:20:01.838 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:20:01.838 -07 000000409 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:20:01.838 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:20:01.838 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:20:01.838 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:20:01.838 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:20:01.838 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:20:01.838 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:20:01.838 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:20:01.838 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:20:01.848 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:20:01.848 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:20:01.848 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:20:01.848 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:20:01.858 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 23:20:01.858 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 23:20:01.858 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 23:20:01.858 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 23:20:01.858 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 472 472 227 227 28763 150\n [Camera]
17-03-17 23:20:02.058 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:20:02.058 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 73. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1178, R2=1229, Total=2407. Warn if over 250 bubbles per interval.
17-03-17 23:20:02.058 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:20:02.528 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 664
17-03-17 23:20:02.528 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 664
17-03-17 23:20:02.528 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 664
17-03-17 23:20:02.538 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 664
17-03-17 23:20:02.538 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:20:02.538 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:20:02.538 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 2503642840, 0x0, 391868352) start.
17-03-17 23:20:02.538 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:20:02.538 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:20:02.538 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 23:20:02.718 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28763 857
17-03-17 23:20:02.868 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1007
17-03-17 23:20:02.908 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 23:20:02.908 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 23:20:02.908 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:20:02.908 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:20:02.918 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 2503642840, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 23:20:02.918 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 23:20:02.918 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:20:02.918 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:20:02.918 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 23:20:02.918 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 23:20:03.098 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1234
17-03-17 23:20:03.098 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1234
17-03-17 23:20:03.098 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:20:03.218 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1234
17-03-17 23:20:03.218 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1234
17-03-17 23:20:03.218 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:20:03.218 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:20:03.218 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2468220576, 0x0, 418435064) start.
17-03-17 23:20:03.218 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:20:03.218 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 23:20:03.288 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1427
17-03-17 23:20:03.288 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:20:03.288 -07 000000610 INF: FPGA: 'CAMDBLSNAP 472 472 227 227 28763 150' command took 2 ms to send, 1428 ms to get response, and 1434 ms overall
17-03-17 23:20:03.298 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:20:03.298 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5390625, Z-Position -0.130865484135765. ------
17-03-17 23:20:03.298 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:20:03.618 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 23:20:03.618 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 23:20:03.618 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:20:03.618 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2468220576, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 23:20:03.618 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 23:20:03.618 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:20:03.618 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:20:03.618 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 519 ms.
17-03-17 23:20:03.618 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:20:03.628 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 23:20:03.638 -07 000000409 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13758 mm
17-03-17 23:20:03.638 -07 000000409 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:20:03.638 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:20:03.638 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 335 ms to get response, and 341 ms overall
17-03-17 23:20:03.638 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:20:03.638 -07 000000593 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 23:20:03.638 -07 000000593 INF: Y Motor: Moving to 67.3826 mm, started at 66.5391 mm, delta = 0.8435 mm
17-03-17 23:20:03.648 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:20:04.228 -07 000000415 INF: Z Motor: Entering MoveAbsStepped (DAC = 30055, sync = True, waitForSettling = False)
17-03-17 23:20:04.228 -07 000000415 INF: Z Motor: Moving to -0.137583 mm, started at -0.130865 mm, distance = -6.72 um
17-03-17 23:20:04.228 -07 000000415 INF: FPGA: Xmit ZDACW 30055\n [Z Motor]
17-03-17 23:20:05.228 -07 000000486 INF: FPGA: Recv YRDPOS 136273
17-03-17 23:20:05.228 -07 000000486 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:20:05.228 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 23:20:05.228 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 1580 ms to get response, and 1584 ms overall
17-03-17 23:20:05.228 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1570 ms to get response, and 1581 ms overall
17-03-17 23:20:05.228 -07 000000593 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:20:05.228 -07 000000415 INF: FPGA: 'ZDACW 30055' command took 0 ms to send, 990 ms to get response, and 999 ms overall
17-03-17 23:20:05.228 -07 000000415 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:20:05.228 -07 000000561 INF: FPGA: Recv ZDACR 30055
17-03-17 23:20:05.228 -07 000000593 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:20:05.228 -07 000000593 INF: Y Motor: Moving 1349 steps-28
17-03-17 23:20:05.238 -07 000000415 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:20:05.238 -07 000000415 INF: Z Motor: MoveAbsStepped took 1008 ms (did NOT wait for settling yet))
17-03-17 23:20:05.238 -07 000000593 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:20:05.538 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 74, FrontChillerTemperature: 3.997626,
17-03-17 23:20:05.608 -07 000000486 INF: FPGA: Recv YMVTILE
17-03-17 23:20:05.608 -07 000000593 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 382 ms overall
17-03-17 23:20:05.658 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:20:05.658 -07 000000541 INF: FPGA: Recv YRDPOS 137978
17-03-17 23:20:05.668 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:05.668 -07 000000593 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:20:05.668 -07 000000593 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-17 23:20:05.668 -07 000000593 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 382 ms, distance = 0.844 mm, average velocity = 2.208 mm/sec
17-03-17 23:20:06.618 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:20:06.618 -07 000000486 INF: FPGA: Recv YRDPOS 137978
17-03-17 23:20:06.628 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:20:06.628 -07 000000593 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:20:06.648 -07 000000593 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:20:06.648 -07 000000593 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:20:06.648 -07 000000593 INF: Y Motor: Moved to 67.3721 after 3008 ms (table move)
17-03-17 23:20:06.658 -07 000000409 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137583 mm (DAC = 30055)
17-03-17 23:20:06.658 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:06.658 -07 000000561 INF: FPGA: Recv ZSGSRD 30707
17-03-17 23:20:06.668 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:06.668 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:06.668 -07 000000486 INF: FPGA: Recv ZSGSRD 30708
17-03-17 23:20:06.678 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:06.678 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:06.678 -07 000000541 INF: FPGA: Recv ZSGSRD 30708
17-03-17 23:20:06.688 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:06.688 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:06.688 -07 000000561 INF: FPGA: Recv ZSGSRD 30711
17-03-17 23:20:06.698 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:06.698 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:06.698 -07 000000541 INF: FPGA: Recv ZSGSRD 30705
17-03-17 23:20:06.708 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:06.708 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:06.708 -07 000000486 INF: FPGA: Recv ZSGSRD 30707
17-03-17 23:20:06.718 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:06.718 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:06.718 -07 000000541 INF: FPGA: Recv ZSGSRD 30704
17-03-17 23:20:06.728 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:06.728 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:06.728 -07 000000561 INF: FPGA: Recv ZSGSRD 30707
17-03-17 23:20:06.738 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:06.738 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:06.738 -07 000000541 INF: FPGA: Recv ZSGSRD 30708
17-03-17 23:20:06.748 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:06.748 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:06.748 -07 000000486 INF: FPGA: Recv ZSGSRD 30711
17-03-17 23:20:06.758 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:06.758 -07 000000409 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:20:06.758 -07 000000541 INF: FPGA: Recv ZPIEZORD 26593
17-03-17 23:20:06.768 -07 000000409 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:06.768 -07 000000409 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.586 V. Piezo Error = -9.1 V.
17-03-17 23:20:06.768 -07 000000409 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.6 um, Read 10 ADC samples: Avg = 30708 (-136.8 uncal um), Error = 0.8 uncal um, Median = 30708 (-136.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 30704 (-136.8 uncal um), Max = 30711 (-136.8 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:20:06.768 -07 000000409 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30708, posNoise = 3, negNoise = 4
17-03-17 23:20:06.768 -07 000000409 INF: Z Motor: After move to -0.137583, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:20:06.768 -07 000000409 INF: Z Motor: Settle wait time = 2428 ms, measure time = 111 ms (allowed 150 ms), total time = 2539 ms
17-03-17 23:20:06.768 -07 000000409 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 23:20:06.808 -07 000000409 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 3168 ms
17-03-17 23:20:06.808 -07 000000409 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:20:06.808 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:20:06.808 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:20:06.808 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:20:06.808 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:20:06.808 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:20:06.808 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:20:06.808 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:20:06.808 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:20:06.818 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:20:06.818 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:20:06.818 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 23:20:06.818 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 23:20:06.828 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:20:06.868 -07 000000409 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:20:07.058 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:20:07.058 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 73. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1178, R2=1229, Total=2407. Warn if over 250 bubbles per interval.
17-03-17 23:20:07.068 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:20:07.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:20:07.068 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:20:07.078 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-17 23:20:07.108 -07 000000561 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:20:07.108 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-17 23:20:07.108 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 285 ms overall
17-03-17 23:20:07.198 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 23:20:07.198 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:20:07.198 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:20:07.198 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 23:20:07.308 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:20:07.308 -07 000000561 INF: Autofocus start
17-03-17 23:20:07.308 -07 000000561 INF: MeasureProfile start
17-03-17 23:20:07.318 -07 000000561 INF: MeasureProfile done
17-03-17 23:20:07.318 -07 000000561 INF: X=1  Z correction [um]=-0.01913792
17-03-17 23:20:07.318 -07 000000561 INF: Autofocus finished
17-03-17 23:20:07.318 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:20:07.318 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 7 ms to get response, and 13 ms overall
17-03-17 23:20:07.318 -07 000000415 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:20:07.528 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:20:07.528 -07 000000415 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 202 ms to get response, and 204 ms overall
17-03-17 23:20:07.528 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.13759805846033. ----------
17-03-17 23:20:07.528 -07 000000610 INF: Cycle	74	Tile	10	Exposure Settings		A	472	G	227	T	227	C	472
17-03-17 23:20:07.528 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28564, sync = True, waitForSettling = True)
17-03-17 23:20:07.528 -07 000000610 INF: Z Motor: Moving to -0.130758 mm, started at -0.137598 mm, distance = 6.84 um
17-03-17 23:20:07.528 -07 000000610 INF: FPGA: Xmit ZDACW 28564\n [Z Motor]
17-03-17 23:20:07.538 -07 000000415 INF: FPGA: Recv ZDACW
17-03-17 23:20:07.538 -07 000000610 INF: FPGA: 'ZDACW 28564' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 23:20:07.538 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:20:07.538 -07 000000415 INF: FPGA: Recv ZDACR 28564
17-03-17 23:20:07.548 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:20:07.548 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:20:07.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:07.698 -07 000000415 INF: FPGA: Recv ZSGSRD 29648
17-03-17 23:20:07.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:20:07.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:07.708 -07 000000561 INF: FPGA: Recv ZSGSRD 29647
17-03-17 23:20:07.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:07.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:07.718 -07 000000561 INF: FPGA: Recv ZSGSRD 29640
17-03-17 23:20:07.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:07.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:07.728 -07 000000561 INF: FPGA: Recv ZSGSRD 29641
17-03-17 23:20:07.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:07.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:07.738 -07 000000561 INF: FPGA: Recv ZSGSRD 29646
17-03-17 23:20:07.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:07.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:07.748 -07 000000561 INF: FPGA: Recv ZSGSRD 29646
17-03-17 23:20:07.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:07.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:07.758 -07 000000561 INF: FPGA: Recv ZSGSRD 29643
17-03-17 23:20:07.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:07.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:07.768 -07 000000561 INF: FPGA: Recv ZSGSRD 29647
17-03-17 23:20:07.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:07.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:07.778 -07 000000561 INF: FPGA: Recv ZSGSRD 29645
17-03-17 23:20:07.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:07.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:07.788 -07 000000561 INF: FPGA: Recv ZSGSRD 29649
17-03-17 23:20:07.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:07.798 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:20:07.798 -07 000000561 INF: FPGA: Recv ZPIEZORD 25207
17-03-17 23:20:07.808 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:07.808 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.359 V. Piezo Error = -9.7 V.
17-03-17 23:20:07.808 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.8 um, Read 10 ADC samples: Avg = 29645 (-130.0 uncal um), Error = 0.8 uncal um, Median = 29646 (-130.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29640 (-130.0 uncal um), Max = 29649 (-130.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:20:07.808 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29645, posNoise = 4, negNoise = 5
17-03-17 23:20:07.808 -07 000000610 INF: Z Motor: After move to -0.130758, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:20:07.808 -07 000000610 INF: Z Motor: MoveAbsStepped took 273 ms)
17-03-17 23:20:07.808 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:20:07.808 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:20:07.808 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:20:07.808 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:20:07.818 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:20:07.818 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:20:07.818 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:20:07.818 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:20:07.818 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:20:07.818 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:20:07.838 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 23:20:07.838 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 23:20:07.838 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:20:07.838 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:20:07.838 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 23:20:07.838 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:20:07.838 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 23:20:07.838 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:20:07.848 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 23:20:07.848 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 23:20:07.858 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 472 472 227 227 28741 150\n [Camera]
17-03-17 23:20:08.058 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:20:08.528 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 664
17-03-17 23:20:08.528 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 664
17-03-17 23:20:08.528 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:20:08.528 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:20:08.528 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2503642840, 0x0, 391868352) start.
17-03-17 23:20:08.528 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 664
17-03-17 23:20:08.528 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 664
17-03-17 23:20:08.528 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:20:08.528 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:20:08.528 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 23:20:08.718 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28741 857
17-03-17 23:20:08.868 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1007
17-03-17 23:20:08.928 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2503642840, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 23:20:08.928 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 23:20:08.928 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:20:08.928 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 23:20:08.928 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 23:20:08.928 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:20:08.938 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:20:08.938 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 23:20:08.938 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:20:08.938 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 23:20:09.098 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1234
17-03-17 23:20:09.098 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1234
17-03-17 23:20:09.098 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:20:09.208 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1234
17-03-17 23:20:09.208 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1234
17-03-17 23:20:09.218 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:20:09.218 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:20:09.218 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2468220576, 0x0, 418435064) start.
17-03-17 23:20:09.218 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:20:09.218 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 23:20:09.288 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1427
17-03-17 23:20:09.288 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:20:09.288 -07 000000610 INF: FPGA: 'CAMDBLSNAP 472 472 227 227 28741 150' command took 2 ms to send, 1425 ms to get response, and 1434 ms overall
17-03-17 23:20:09.288 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:20:09.288 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.3720703125, Z-Position -0.130769120953639. ------
17-03-17 23:20:09.298 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:20:09.298 -07 000000478 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13719 mm
17-03-17 23:20:09.298 -07 000000478 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:20:09.298 -07 000000459 INF: Z Motor: Entering MoveAbsStepped (DAC = 29968, sync = True, waitForSettling = False)
17-03-17 23:20:09.298 -07 000000459 INF: Z Motor: Moving to -0.137185 mm, started at -0.130769 mm, distance = -6.42 um
17-03-17 23:20:09.298 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 23:20:09.298 -07 000000501 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm
17-03-17 23:20:09.308 -07 000000459 INF: FPGA: Xmit ZDACW 29968\n [Z Motor]
17-03-17 23:20:09.318 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:20:09.598 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 23:20:09.598 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 23:20:09.598 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:20:09.608 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:20:09.608 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 506 ms.
17-03-17 23:20:09.608 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2468220576, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 23:20:09.608 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 23:20:09.608 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:20:09.618 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 23:20:09.618 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:20:09.618 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 23:20:09.618 -07 000000429 INF: FPGA: Recv YRDPOS 137979
17-03-17 23:20:09.618 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 299 ms to get response, and 323 ms overall
17-03-17 23:20:09.618 -07 000000459 INF: FPGA: 'ZDACW 29968' command took 0 ms to send, 309 ms to get response, and 323 ms overall
17-03-17 23:20:09.618 -07 000000459 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:20:09.628 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 318 ms to get response, and 327 ms overall
17-03-17 23:20:09.628 -07 000000501 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:20:09.628 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:20:09.628 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 23:20:09.628 -07 000000429 INF: FPGA: Recv ZDACR 29968
17-03-17 23:20:09.628 -07 000000459 INF: FPGA: 'ZDACR' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 23:20:09.628 -07 000000459 INF: Z Motor: MoveAbsStepped took 327 ms (did NOT wait for settling yet))
17-03-17 23:20:09.628 -07 000000501 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:20:09.628 -07 000000501 INF: Y Motor: Moving 1344 steps-22
17-03-17 23:20:09.638 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:20:09.828 -07 000000482 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:20:09.828 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:20:10.008 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-17 23:20:10.008 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 382 ms overall
17-03-17 23:20:10.058 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:20:10.058 -07 000000561 INF: FPGA: Recv YRDPOS 139684
17-03-17 23:20:10.068 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:20:10.068 -07 000000501 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:20:10.068 -07 000000501 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 23:20:10.068 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 382 ms, distance = 0.841 mm, average velocity = 2.200 mm/sec
17-03-17 23:20:10.898 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 74, FrontChillerTemperature: 3.993549,
17-03-17 23:20:11.018 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:20:11.728 -07 000000576 INF: FPGA: Recv YRDPOS 139685
17-03-17 23:20:11.728 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 700 ms to get response, and 710 ms overall
17-03-17 23:20:11.728 -07 000000501 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:20:11.748 -07 000000501 INF: Y Motor: After move to 68.212608, error = -0.007042, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:20:11.748 -07 000000501 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 23:20:11.748 -07 000000501 INF: Y Motor: Moved to 68.2056 after 2449 ms (table move)
17-03-17 23:20:11.748 -07 000000478 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137185 mm (DAC = 29968)
17-03-17 23:20:11.778 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:11.778 -07 000000576 INF: FPGA: Recv ZSGSRD 30648
17-03-17 23:20:11.788 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 23:20:11.788 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:11.788 -07 000000576 INF: FPGA: Recv ZSGSRD 30644
17-03-17 23:20:11.798 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:11.798 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:11.798 -07 000000576 INF: FPGA: Recv ZSGSRD 30646
17-03-17 23:20:11.808 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:11.808 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:11.808 -07 000000576 INF: FPGA: Recv ZSGSRD 30643
17-03-17 23:20:11.818 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:11.818 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:11.818 -07 000000576 INF: FPGA: Recv ZSGSRD 30645
17-03-17 23:20:11.828 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:11.828 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:11.828 -07 000000576 INF: FPGA: Recv ZSGSRD 30650
17-03-17 23:20:11.838 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:11.838 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:11.838 -07 000000501 INF: FPGA: Recv ZSGSRD 30641
17-03-17 23:20:11.848 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:11.848 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:11.848 -07 000000501 INF: FPGA: Recv ZSGSRD 30647
17-03-17 23:20:11.858 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:11.858 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:11.858 -07 000000576 INF: FPGA: Recv ZSGSRD 30648
17-03-17 23:20:11.868 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:11.868 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:11.868 -07 000000501 INF: FPGA: Recv ZSGSRD 30648
17-03-17 23:20:11.878 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:11.878 -07 000000478 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:20:11.878 -07 000000576 INF: FPGA: Recv ZPIEZORD 26520
17-03-17 23:20:11.888 -07 000000478 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:11.888 -07 000000478 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.573 V. Piezo Error = -9.1 V.
17-03-17 23:20:11.888 -07 000000478 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.2 um, Read 10 ADC samples: Avg = 30646 (-136.4 uncal um), Error = 0.8 uncal um, Median = 30646 (-136.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30641 (-136.4 uncal um), Max = 30650 (-136.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:20:11.888 -07 000000478 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30646, posNoise = 4, negNoise = 5
17-03-17 23:20:11.888 -07 000000478 INF: Z Motor: After move to -0.137185, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:20:11.888 -07 000000478 INF: Z Motor: Settle wait time = 2454 ms, measure time = 131 ms (allowed 150 ms), total time = 2585 ms
17-03-17 23:20:11.888 -07 000000478 INF: Z Motor: Waiting extra 19 ms after reading position to reach expected total of 150 ms
17-03-17 23:20:11.908 -07 000000478 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2608 ms
17-03-17 23:20:11.908 -07 000000478 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:20:11.908 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:20:11.908 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:20:11.908 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:20:11.908 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:20:11.908 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:20:11.908 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:20:11.908 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:20:11.908 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:20:11.918 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 23:20:11.918 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:20:11.928 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 23:20:11.928 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 23:20:11.928 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:20:11.978 -07 000000478 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:20:12.058 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:20:12.058 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 73. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1178, R2=1229, Total=2407. Warn if over 250 bubbles per interval.
17-03-17 23:20:12.178 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:20:12.178 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:20:12.178 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:20:12.178 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-17 23:20:12.218 -07 000000478 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:20:12.218 -07 000000478 INF: FPGA: Recv CAMSNAP
17-03-17 23:20:12.218 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 23:20:12.308 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 23:20:12.308 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:20:12.308 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:20:12.308 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 23:20:12.318 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:20:12.318 -07 000000501 INF: Autofocus start
17-03-17 23:20:12.318 -07 000000501 INF: MeasureProfile start
17-03-17 23:20:12.318 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:20:12.328 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:20:12.328 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:20:12.328 -07 000000501 INF: MeasureProfile done
17-03-17 23:20:12.328 -07 000000501 INF: X=16  Z correction [um]=0.0530179
17-03-17 23:20:12.328 -07 000000501 INF: Autofocus finished
17-03-17 23:20:13.228 -07 000000627 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:20:13.228 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 890 ms to get response, and 900 ms overall
17-03-17 23:20:13.228 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20556640625, Z-position -0.137199757307541. ----------
17-03-17 23:20:13.228 -07 000000610 INF: Cycle	74	Tile	11	Exposure Settings		A	472	G	227	T	227	C	472
17-03-17 23:20:13.228 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28492, sync = True, waitForSettling = True)
17-03-17 23:20:13.228 -07 000000610 INF: Z Motor: Moving to -0.130428 mm, started at -0.137200 mm, distance = 6.77 um
17-03-17 23:20:13.228 -07 000000610 INF: FPGA: Xmit ZDACW 28492\n [Z Motor]
17-03-17 23:20:13.238 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 23:20:13.238 -07 000000610 INF: FPGA: 'ZDACW 28492' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 23:20:13.238 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:20:13.238 -07 000000576 INF: FPGA: Recv ZDACR 28492
17-03-17 23:20:13.248 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:20:13.248 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:20:13.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:13.398 -07 000000576 INF: FPGA: Recv ZSGSRD 29595
17-03-17 23:20:13.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:20:13.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:13.408 -07 000000627 INF: FPGA: Recv ZSGSRD 29596
17-03-17 23:20:13.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:13.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:13.418 -07 000000627 INF: FPGA: Recv ZSGSRD 29591
17-03-17 23:20:13.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:13.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:13.428 -07 000000576 INF: FPGA: Recv ZSGSRD 29597
17-03-17 23:20:13.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:13.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:13.438 -07 000000576 INF: FPGA: Recv ZSGSRD 29594
17-03-17 23:20:13.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:13.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:13.448 -07 000000576 INF: FPGA: Recv ZSGSRD 29594
17-03-17 23:20:13.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:13.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:13.458 -07 000000576 INF: FPGA: Recv ZSGSRD 29594
17-03-17 23:20:13.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:13.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:13.468 -07 000000627 INF: FPGA: Recv ZSGSRD 29592
17-03-17 23:20:13.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:13.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:13.478 -07 000000551 INF: FPGA: Recv ZSGSRD 29594
17-03-17 23:20:13.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:13.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:13.488 -07 000000462 INF: FPGA: Recv ZSGSRD 29591
17-03-17 23:20:13.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:13.498 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:20:13.498 -07 000000576 INF: FPGA: Recv ZPIEZORD 25132
17-03-17 23:20:13.508 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:13.508 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.348 V. Piezo Error = -9.8 V.
17-03-17 23:20:13.508 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.4 um, Read 10 ADC samples: Avg = 29594 (-129.7 uncal um), Error = 0.8 uncal um, Median = 29594 (-129.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29591 (-129.6 uncal um), Max = 29597 (-129.7 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 23:20:13.508 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29594, posNoise = 3, negNoise = 3
17-03-17 23:20:13.508 -07 000000610 INF: Z Motor: After move to -0.130428, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:20:13.508 -07 000000610 INF: Z Motor: MoveAbsStepped took 272 ms)
17-03-17 23:20:13.508 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:20:13.508 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:20:13.508 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:20:13.508 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:20:13.508 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:20:13.508 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:20:13.508 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:20:13.508 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:20:13.508 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:20:13.508 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:20:13.508 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:20:13.508 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:20:13.518 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:20:13.518 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:20:13.518 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 23:20:13.518 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:20:13.528 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 23:20:13.528 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 23:20:13.528 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 23:20:13.528 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 23:20:13.538 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 472 472 227 227 28669 150\n [Camera]
17-03-17 23:20:13.738 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:20:14.208 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 665
17-03-17 23:20:14.208 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 665
17-03-17 23:20:14.208 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:20:14.208 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:20:14.208 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2503642840, 0x0, 391868352) start.
17-03-17 23:20:14.208 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 666
17-03-17 23:20:14.208 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 666
17-03-17 23:20:14.208 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:20:14.208 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:20:14.208 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 23:20:14.398 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28669 857
17-03-17 23:20:14.548 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1007
17-03-17 23:20:14.608 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2503642840, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 23:20:14.608 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 23:20:14.608 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:20:14.608 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 23:20:14.608 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 23:20:14.718 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:20:14.718 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 110 ms.
17-03-17 23:20:14.718 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 513 ms.
17-03-17 23:20:14.718 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 110 ms.
17-03-17 23:20:14.728 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 518 ms.
17-03-17 23:20:14.778 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1234
17-03-17 23:20:14.778 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1234
17-03-17 23:20:14.778 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:20:14.778 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1234
17-03-17 23:20:14.778 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1234
17-03-17 23:20:14.778 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:20:14.788 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:20:14.788 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 23:20:14.788 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:20:14.788 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2468220576, 0x0, 418435064) start.
17-03-17 23:20:14.968 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP 1426
17-03-17 23:20:14.968 -07 000000627 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:20:14.968 -07 000000610 INF: FPGA: 'CAMDBLSNAP 472 472 227 227 28669 150' command took 2 ms to send, 1424 ms to get response, and 1434 ms overall
17-03-17 23:20:14.968 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:20:14.968 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.20556640625, Z-Position -0.130441486134409. ------
17-03-17 23:20:14.978 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:20:14.978 -07 000000551 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13707 mm
17-03-17 23:20:14.978 -07 000000551 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:20:15.178 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 23:20:15.178 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 23:20:15.178 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:20:15.188 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 23:20:15.188 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 23:20:15.188 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2468220576, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 23:20:15.188 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 23:20:15.188 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:20:15.198 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:20:15.198 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 421 ms.
17-03-17 23:20:15.198 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 23:20:15.198 -07 000000618 INF: Y Motor: Moving to 69.0426 mm, started at 68.2056 mm, delta = 0.8370 mm
17-03-17 23:20:15.198 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:20:15.208 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:20:15.208 -07 000000576 INF: FPGA: Recv YRDPOS 139685
17-03-17 23:20:15.208 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 226 ms to get response, and 236 ms overall
17-03-17 23:20:15.208 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 7 ms to get response, and 8 ms overall
17-03-17 23:20:15.208 -07 000000618 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:20:15.208 -07 000000627 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:20:15.208 -07 000000618 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:20:15.208 -07 000000618 INF: Y Motor: Moving 1339 steps-15
17-03-17 23:20:15.208 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 29942, sync = True, waitForSettling = False)
17-03-17 23:20:15.208 -07 000000576 INF: Z Motor: Moving to -0.137066 mm, started at -0.130441 mm, distance = -6.62 um
17-03-17 23:20:15.218 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:20:15.228 -07 000000576 INF: FPGA: Xmit ZDACW 29942\n [Z Motor]
17-03-17 23:20:15.728 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 23:20:15.728 -07 000000541 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:20:15.728 -07 000000541 INF: FPGA: Recv YMVTILE
17-03-17 23:20:15.728 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 500 ms to get response, and 513 ms overall
17-03-17 23:20:15.728 -07 000000576 INF: FPGA: 'ZDACW 29942' command took 0 ms to send, 490 ms to get response, and 512 ms overall
17-03-17 23:20:15.728 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:20:15.728 -07 000000627 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 510 ms to get response, and 513 ms overall
17-03-17 23:20:15.728 -07 000000541 INF: FPGA: Recv ZDACR 29942
17-03-17 23:20:15.738 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:20:15.738 -07 000000576 INF: Z Motor: MoveAbsStepped took 522 ms (did NOT wait for settling yet))
17-03-17 23:20:15.778 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:20:15.778 -07 000000576 INF: FPGA: Recv YRDPOS 141368
17-03-17 23:20:15.788 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:20:15.788 -07 000000618 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:20:15.788 -07 000000618 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 23:20:15.788 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 513 ms, distance = 0.837 mm, average velocity = 1.632 mm/sec
17-03-17 23:20:16.738 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:20:16.738 -07 000000541 INF: FPGA: Recv YRDPOS 141368
17-03-17 23:20:16.748 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:16.748 -07 000000618 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:20:16.768 -07 000000618 INF: Y Motor: After move to 69.042610, error = -0.015266, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:20:16.768 -07 000000618 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:20:16.768 -07 000000618 INF: Y Motor: Moved to 69.0273 after 1568 ms (table move)
17-03-17 23:20:16.778 -07 000000551 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137066 mm (DAC = 29942)
17-03-17 23:20:16.788 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:17.728 -07 000000486 INF: FPGA: Recv ZSGSRD 30624
17-03-17 23:20:17.728 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:20:17.728 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 930 ms to get response, and 948 ms overall
17-03-17 23:20:17.728 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 73. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1178, R2=1229, Total=2407. Warn if over 250 bubbles per interval.
17-03-17 23:20:17.728 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 74, FrontChillerTemperature: 4.001704,
17-03-17 23:20:17.728 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:17.728 -07 000000486 INF: FPGA: Recv ZSGSRD 30629
17-03-17 23:20:17.738 -07 000000551 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:17.758 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:17.758 -07 000000486 INF: FPGA: Recv ZSGSRD 30628
17-03-17 23:20:17.768 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:20:17.768 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:18.728 -07 000000409 INF: FPGA: Recv ZSGSRD 30624
17-03-17 23:20:18.728 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 950 ms to get response, and 960 ms overall
17-03-17 23:20:18.748 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:18.748 -07 000000409 INF: FPGA: Recv ZSGSRD 30625
17-03-17 23:20:18.758 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:20:18.778 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:18.778 -07 000000448 INF: FPGA: Recv ZSGSRD 30628
17-03-17 23:20:18.788 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:20:18.788 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:18.788 -07 000000448 INF: FPGA: Recv ZSGSRD 30624
17-03-17 23:20:18.798 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:18.808 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:18.808 -07 000000448 INF: FPGA: Recv ZSGSRD 30634
17-03-17 23:20:18.818 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:20:18.818 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:18.818 -07 000000415 INF: FPGA: Recv ZSGSRD 30624
17-03-17 23:20:18.828 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:18.828 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:18.828 -07 000000448 INF: FPGA: Recv ZSGSRD 30623
17-03-17 23:20:18.838 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:18.838 -07 000000551 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:20:18.838 -07 000000409 INF: FPGA: Recv ZPIEZORD 26493
17-03-17 23:20:18.848 -07 000000551 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:18.848 -07 000000551 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.569 V. Piezo Error = -9.1 V.
17-03-17 23:20:18.848 -07 000000551 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.1 um, Read 10 ADC samples: Avg = 30626 (-136.3 uncal um), Error = 0.8 uncal um, Median = 30624 (-136.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30623 (-136.3 uncal um), Max = 30634 (-136.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 23:20:18.848 -07 000000551 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30626, posNoise = 8, negNoise = 3
17-03-17 23:20:18.848 -07 000000551 INF: Z Motor: After move to -0.137066, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:20:18.848 -07 000000551 INF: Z Motor: Settle wait time = 1563 ms, measure time = 2069 ms (allowed 150 ms), total time = 3632 ms
17-03-17 23:20:18.848 -07 000000551 INF: Z Motor: Warning: Actual position measuring time = 2069 ms, longer than max expected time of 150 ms
17-03-17 23:20:18.848 -07 000000551 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 3870 ms
17-03-17 23:20:18.848 -07 000000551 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:20:18.848 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:20:18.848 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:20:18.848 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:20:18.848 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:20:18.848 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:20:18.848 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:20:18.848 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:20:18.848 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:20:18.858 -07 000000415 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:20:18.858 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:20:18.868 -07 000000415 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 23:20:18.868 -07 000000415 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 23:20:18.868 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:20:18.918 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:20:19.118 -07 000000551 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:20:19.118 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:20:19.118 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:20:19.118 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-17 23:20:19.158 -07 000000459 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:20:19.158 -07 000000482 INF: FPGA: Recv CAMSNAP
17-03-17 23:20:19.158 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 2 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 23:20:19.248 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 23:20:19.248 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:20:19.248 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:20:19.248 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 23:20:19.258 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:20:19.258 -07 000000551 INF: Autofocus start
17-03-17 23:20:19.258 -07 000000551 INF: MeasureProfile start
17-03-17 23:20:19.258 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:20:19.268 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:20:19.268 -07 000000448 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:20:19.268 -07 000000551 INF: MeasureProfile done
17-03-17 23:20:19.268 -07 000000551 INF: X=0  Z correction [um]=-0.02394831
17-03-17 23:20:19.268 -07 000000551 INF: Autofocus finished
17-03-17 23:20:19.468 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:20:19.468 -07 000000448 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:20:19.468 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02734375, Z-position -0.137071273064706. ----------
17-03-17 23:20:19.468 -07 000000610 INF: Cycle	74	Tile	12	Exposure Settings		A	472	G	227	T	227	C	472
17-03-17 23:20:19.478 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28449, sync = True, waitForSettling = True)
17-03-17 23:20:19.478 -07 000000610 INF: Z Motor: Moving to -0.130231 mm, started at -0.137071 mm, distance = 6.84 um
17-03-17 23:20:19.478 -07 000000610 INF: FPGA: Xmit ZDACW 28449\n [Z Motor]
17-03-17 23:20:19.478 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 23:20:19.488 -07 000000610 INF: FPGA: 'ZDACW 28449' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:19.488 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:20:19.488 -07 000000429 INF: FPGA: Recv ZDACR 28449
17-03-17 23:20:19.498 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:19.498 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:20:19.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:19.648 -07 000000409 INF: FPGA: Recv ZSGSRD 29560
17-03-17 23:20:19.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:20:19.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:19.658 -07 000000448 INF: FPGA: Recv ZSGSRD 29563
17-03-17 23:20:19.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:19.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:19.668 -07 000000429 INF: FPGA: Recv ZSGSRD 29566
17-03-17 23:20:19.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:19.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:19.678 -07 000000448 INF: FPGA: Recv ZSGSRD 29559
17-03-17 23:20:19.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:19.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:19.688 -07 000000551 INF: FPGA: Recv ZSGSRD 29558
17-03-17 23:20:19.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:19.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:19.698 -07 000000448 INF: FPGA: Recv ZSGSRD 29566
17-03-17 23:20:19.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:19.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:19.708 -07 000000551 INF: FPGA: Recv ZSGSRD 29560
17-03-17 23:20:19.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:19.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:19.718 -07 000000429 INF: FPGA: Recv ZSGSRD 29562
17-03-17 23:20:19.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:19.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:19.728 -07 000000482 INF: FPGA: Recv ZSGSRD 29557
17-03-17 23:20:19.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:19.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:19.738 -07 000000551 INF: FPGA: Recv ZSGSRD 29565
17-03-17 23:20:19.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:19.748 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:20:19.748 -07 000000415 INF: FPGA: Recv ZPIEZORD 25115
17-03-17 23:20:19.758 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:19.758 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.341 V. Piezo Error = -9.8 V.
17-03-17 23:20:19.758 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.2 um, Read 10 ADC samples: Avg = 29562 (-129.5 uncal um), Error = 0.8 uncal um, Median = 29561 (-129.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29557 (-129.4 uncal um), Max = 29566 (-129.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:20:19.758 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29562, posNoise = 4, negNoise = 5
17-03-17 23:20:19.758 -07 000000610 INF: Z Motor: After move to -0.130231, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:20:19.758 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 23:20:19.758 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:20:19.758 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:20:19.758 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:20:19.758 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:20:19.758 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:20:19.758 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:20:19.758 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:20:19.758 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:20:19.758 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:20:19.758 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:20:19.758 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:20:19.758 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:20:19.768 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:20:19.768 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:20:19.768 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:20:19.768 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:20:19.768 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 23:20:19.768 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 23:20:19.768 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 23:20:19.768 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:20:19.778 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 472 472 227 227 28626 150\n [Camera]
17-03-17 23:20:19.978 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:20:21.228 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 664
17-03-17 23:20:21.228 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 664
17-03-17 23:20:21.228 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28626 857
17-03-17 23:20:21.228 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1007
17-03-17 23:20:21.228 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1234
17-03-17 23:20:21.228 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1234
17-03-17 23:20:21.228 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP 1427
17-03-17 23:20:21.228 -07 000000415 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:20:21.228 -07 000000610 INF: FPGA: 'CAMDBLSNAP 472 472 227 227 28626 150' command took 2 ms to send, 1441 ms to get response, and 1448 ms overall
17-03-17 23:20:21.228 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 664
17-03-17 23:20:21.228 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 664
17-03-17 23:20:21.228 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1234
17-03-17 23:20:21.228 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1234
17-03-17 23:20:21.228 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:20:21.228 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:20:21.228 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-17 23:20:21.228 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:20:21.228 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:20:21.228 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:20:21.228 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-17 23:20:21.228 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:20:21.328 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:20:21.328 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02734375, Z-Position -0.130235911345872. ------
17-03-17 23:20:21.328 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:20:21.608 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 23:20:21.608 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 23:20:21.608 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:20:21.608 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 23:20:21.608 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 23:20:21.608 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:20:21.608 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:20:21.608 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:20:21.608 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 23:20:21.608 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:20:21.608 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 23:20:21.618 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 23:20:21.618 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:20:21.618 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 23:20:21.638 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:20:21.638 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 303 ms to get response, and 309 ms overall
17-03-17 23:20:21.638 -07 000000415 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13659 mm
17-03-17 23:20:21.638 -07 000000415 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:20:21.638 -07 000000448 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:20:21.638 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 23:20:21.638 -07 000000561 INF: Y Motor: Moving to 69.8726 mm, started at 69.0273 mm, delta = 0.8453 mm
17-03-17 23:20:21.648 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:20:21.998 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 23:20:21.998 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 23:20:21.998 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:20:22.008 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 23:20:22.008 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 23:20:22.008 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:20:22.008 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 23:20:22.008 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 782 ms.
17-03-17 23:20:22.008 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:20:22.018 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 790 ms.
17-03-17 23:20:22.018 -07 000000409 INF: Z Motor: Entering MoveAbsStepped (DAC = 29837, sync = True, waitForSettling = False)
17-03-17 23:20:22.018 -07 000000409 INF: Z Motor: Moving to -0.136585 mm, started at -0.130236 mm, distance = -6.35 um
17-03-17 23:20:22.018 -07 000000409 INF: FPGA: Xmit ZDACW 29837\n [Z Motor]
17-03-17 23:20:22.028 -07 000000429 INF: FPGA: Recv YRDPOS 141369
17-03-17 23:20:22.028 -07 000000429 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:20:22.028 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 23:20:22.028 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 372 ms to get response, and 386 ms overall
17-03-17 23:20:22.028 -07 000000409 INF: FPGA: 'ZDACW 29837' command took 0 ms to send, 3 ms to get response, and 3 ms overall
17-03-17 23:20:22.028 -07 000000448 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 382 ms to get response, and 388 ms overall
17-03-17 23:20:22.028 -07 000000561 INF: Y Motor: Encoder = 141369 = motor step 110444.5 = 69.0278 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:20:22.028 -07 000000409 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:20:22.028 -07 000000429 INF: FPGA: Recv ZDACR 29837
17-03-17 23:20:22.028 -07 000000561 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:20:22.028 -07 000000561 INF: Y Motor: Moving 1352 steps-31
17-03-17 23:20:22.038 -07 000000409 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:20:22.038 -07 000000409 INF: Z Motor: MoveAbsStepped took 10 ms (did NOT wait for settling yet))
17-03-17 23:20:22.038 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:20:22.058 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:20:22.058 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 73. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1178, R2=1229, Total=2407. Warn if over 250 bubbles per interval.
17-03-17 23:20:22.408 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 23:20:22.408 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 380 ms overall
17-03-17 23:20:22.458 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:20:22.458 -07 000000409 INF: FPGA: Recv YRDPOS 143080
17-03-17 23:20:22.468 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:22.468 -07 000000561 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:20:22.468 -07 000000561 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 23:20:22.468 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 380 ms, distance = 0.845 mm, average velocity = 2.224 mm/sec
17-03-17 23:20:23.418 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:20:23.418 -07 000000429 INF: FPGA: Recv YRDPOS 143080
17-03-17 23:20:23.428 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:20:23.428 -07 000000561 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:20:23.448 -07 000000561 INF: Y Motor: After move to 69.872612, error = -0.009331, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:20:23.448 -07 000000561 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:20:23.448 -07 000000561 INF: Y Motor: Moved to 69.8633 after 1809 ms (table move)
17-03-17 23:20:23.448 -07 000000415 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136585 mm (DAC = 29837)
17-03-17 23:20:23.448 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:23.458 -07 000000429 INF: FPGA: Recv ZSGSRD 30558
17-03-17 23:20:23.458 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 23:20:23.458 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:23.458 -07 000000409 INF: FPGA: Recv ZSGSRD 30548
17-03-17 23:20:23.468 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:20:23.468 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:23.468 -07 000000409 INF: FPGA: Recv ZSGSRD 30554
17-03-17 23:20:23.478 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:23.478 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:23.478 -07 000000429 INF: FPGA: Recv ZSGSRD 30545
17-03-17 23:20:23.488 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:23.488 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:23.488 -07 000000429 INF: FPGA: Recv ZSGSRD 30551
17-03-17 23:20:23.498 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:23.498 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:23.498 -07 000000409 INF: FPGA: Recv ZSGSRD 30551
17-03-17 23:20:23.508 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:23.508 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:23.508 -07 000000448 INF: FPGA: Recv ZSGSRD 30554
17-03-17 23:20:23.518 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:23.518 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:23.518 -07 000000448 INF: FPGA: Recv ZSGSRD 30550
17-03-17 23:20:23.528 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:23.528 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:23.528 -07 000000561 INF: FPGA: Recv ZSGSRD 30550
17-03-17 23:20:23.538 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:23.538 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:23.538 -07 000000448 INF: FPGA: Recv ZSGSRD 30556
17-03-17 23:20:23.548 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:23.548 -07 000000415 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:20:23.548 -07 000000561 INF: FPGA: Recv ZPIEZORD 26432
17-03-17 23:20:23.558 -07 000000415 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:23.558 -07 000000415 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.553 V. Piezo Error = -9.1 V.
17-03-17 23:20:23.558 -07 000000415 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.6 um, Read 10 ADC samples: Avg = 30552 (-135.8 uncal um), Error = 0.8 uncal um, Median = 30551 (-135.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30545 (-135.8 uncal um), Max = 30558 (-135.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 23:20:23.558 -07 000000415 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30552, posNoise = 6, negNoise = 7
17-03-17 23:20:23.558 -07 000000415 INF: Z Motor: After move to -0.136585, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:20:23.558 -07 000000415 INF: Z Motor: Settle wait time = 1429 ms, measure time = 102 ms (allowed 150 ms), total time = 1531 ms
17-03-17 23:20:23.558 -07 000000415 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 23:20:23.608 -07 000000415 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1966 ms
17-03-17 23:20:23.608 -07 000000415 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:20:23.608 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:20:23.608 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:20:23.608 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:20:23.608 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:20:23.608 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:20:23.608 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:20:23.608 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:20:23.608 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:20:23.618 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 23:20:23.618 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:20:23.628 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 23:20:23.628 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 23:20:23.628 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:20:23.678 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:20:23.878 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:20:23.878 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:20:23.878 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:20:23.878 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 658880552, 0x0, 559484976) start.
17-03-17 23:20:23.918 -07 000000409 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:20:23.918 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-17 23:20:23.918 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 2 ms to send, 272 ms to get response, and 285 ms overall
17-03-17 23:20:24.008 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 658880552, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 23:20:24.008 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:20:24.008 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:20:24.008 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 23:20:24.018 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:20:24.018 -07 000000409 INF: Autofocus start
17-03-17 23:20:24.018 -07 000000409 INF: MeasureProfile start
17-03-17 23:20:24.018 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:20:24.028 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:20:24.028 -07 000000478 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:20:24.028 -07 000000409 INF: MeasureProfile done
17-03-17 23:20:24.028 -07 000000409 INF: X=16  Z correction [um]=0.0530179
17-03-17 23:20:24.028 -07 000000409 INF: Autofocus finished
17-03-17 23:20:24.058 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 74, FrontChillerTemperature: 4.028963,
17-03-17 23:20:24.228 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:20:24.228 -07 000000478 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:20:24.228 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86328125, Z-position -0.136595881366216. ----------
17-03-17 23:20:24.228 -07 000000610 INF: Cycle	74	Tile	13	Exposure Settings		A	472	G	227	T	227	C	472
17-03-17 23:20:24.228 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28362, sync = True, waitForSettling = True)
17-03-17 23:20:24.238 -07 000000610 INF: Z Motor: Moving to -0.129833 mm, started at -0.136596 mm, distance = 6.76 um
17-03-17 23:20:24.238 -07 000000610 INF: FPGA: Xmit ZDACW 28362\n [Z Motor]
17-03-17 23:20:24.238 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 23:20:24.248 -07 000000610 INF: FPGA: 'ZDACW 28362' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:20:24.248 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:20:24.248 -07 000000409 INF: FPGA: Recv ZDACR 28362
17-03-17 23:20:24.258 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:24.258 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:20:24.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:24.408 -07 000000448 INF: FPGA: Recv ZSGSRD 29499
17-03-17 23:20:24.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:20:24.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:24.418 -07 000000462 INF: FPGA: Recv ZSGSRD 29505
17-03-17 23:20:24.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:24.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:24.428 -07 000000415 INF: FPGA: Recv ZSGSRD 29500
17-03-17 23:20:24.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:24.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:24.438 -07 000000478 INF: FPGA: Recv ZSGSRD 29495
17-03-17 23:20:24.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:24.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:24.448 -07 000000429 INF: FPGA: Recv ZSGSRD 29499
17-03-17 23:20:24.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:24.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:24.458 -07 000000409 INF: FPGA: Recv ZSGSRD 29501
17-03-17 23:20:24.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:24.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:24.468 -07 000000415 INF: FPGA: Recv ZSGSRD 29499
17-03-17 23:20:24.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:24.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:24.478 -07 000000448 INF: FPGA: Recv ZSGSRD 29499
17-03-17 23:20:24.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:24.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:24.488 -07 000000501 INF: FPGA: Recv ZSGSRD 29498
17-03-17 23:20:24.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:24.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:24.498 -07 000000501 INF: FPGA: Recv ZSGSRD 29507
17-03-17 23:20:24.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:24.508 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:20:24.508 -07 000000409 INF: FPGA: Recv ZPIEZORD 25052
17-03-17 23:20:24.518 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:24.518 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.328 V. Piezo Error = -9.8 V.
17-03-17 23:20:24.518 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.8 um, Read 10 ADC samples: Avg = 29500 (-129.1 uncal um), Error = 0.8 uncal um, Median = 29499 (-129.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29495 (-129.0 uncal um), Max = 29507 (-129.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:20:24.518 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29500, posNoise = 7, negNoise = 5
17-03-17 23:20:24.518 -07 000000610 INF: Z Motor: After move to -0.129833, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:20:24.518 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 23:20:24.518 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:20:24.518 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:20:24.518 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:20:24.518 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:20:24.518 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:20:24.518 -07 000000409 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:20:24.518 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:20:24.518 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:20:24.518 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:20:24.518 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:20:24.518 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:20:24.518 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:20:24.518 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:20:24.518 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:20:24.528 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 23:20:24.528 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:20:24.538 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-17 23:20:24.538 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 23:20:24.538 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 23:20:24.538 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 23:20:24.548 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 472 472 227 227 28538 150\n [Camera]
17-03-17 23:20:24.738 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:20:25.218 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 664
17-03-17 23:20:25.218 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 664
17-03-17 23:20:25.218 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:20:25.218 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:20:25.218 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 23:20:25.218 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 664
17-03-17 23:20:25.218 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 664
17-03-17 23:20:25.218 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:20:25.218 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:20:25.218 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 23:20:25.408 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28538 859
17-03-17 23:20:25.558 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1007
17-03-17 23:20:25.618 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 23:20:25.618 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 23:20:25.618 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:20:25.618 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 23:20:25.618 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 23:20:25.618 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:20:25.618 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:20:25.618 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 23:20:25.618 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:20:25.628 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 23:20:25.788 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1237
17-03-17 23:20:25.788 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1237
17-03-17 23:20:25.788 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:20:25.788 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:20:25.788 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 23:20:25.788 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1237
17-03-17 23:20:25.788 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1237
17-03-17 23:20:25.788 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:20:25.788 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:20:25.798 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 23:20:25.978 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP 1427
17-03-17 23:20:25.978 -07 000000448 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:20:25.978 -07 000000610 INF: FPGA: 'CAMDBLSNAP 472 472 227 227 28538 150' command took 2 ms to send, 1424 ms to get response, and 1434 ms overall
17-03-17 23:20:25.978 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:20:25.978 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86328125, Z-Position -0.129837610193083. ------
17-03-17 23:20:25.978 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:20:25.978 -07 000000409 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13626 mm
17-03-17 23:20:25.978 -07 000000409 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:20:26.198 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 405 ms.
17-03-17 23:20:26.198 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 23:20:26.198 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:20:26.198 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 405 ms.
17-03-17 23:20:26.198 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 23:20:26.198 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:20:26.198 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:20:26.198 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 23:20:26.198 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-17 23:20:26.208 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-17 23:20:26.218 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 23:20:26.218 -07 000000501 INF: Y Motor: Moving to 70.7026 mm, started at 69.8633 mm, delta = 0.8393 mm
17-03-17 23:20:26.218 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:20:26.218 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:20:26.218 -07 000000429 INF: FPGA: Recv YRDPOS 143081
17-03-17 23:20:26.218 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 235 ms to get response, and 236 ms overall
17-03-17 23:20:26.218 -07 000000429 INF: Z Motor: Entering MoveAbsStepped (DAC = 29765, sync = True, waitForSettling = False)
17-03-17 23:20:26.218 -07 000000429 INF: Z Motor: Moving to -0.136255 mm, started at -0.129838 mm, distance = -6.42 um
17-03-17 23:20:26.228 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:26.228 -07 000000429 INF: FPGA: Xmit ZDACW 29765\n [Z Motor]
17-03-17 23:20:26.228 -07 000000501 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:20:26.228 -07 000000501 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:20:26.228 -07 000000501 INF: Y Motor: Moving 1342 steps-19
17-03-17 23:20:26.238 -07 000000448 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:20:26.248 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:20:27.228 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 23:20:27.228 -07 000000593 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:20:27.228 -07 000000593 INF: FPGA: Recv YMVTILE
17-03-17 23:20:27.228 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:20:27.228 -07 000000429 INF: FPGA: 'ZDACW 29765' command took 0 ms to send, 990 ms to get response, and 1001 ms overall
17-03-17 23:20:27.228 -07 000000429 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:20:27.228 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 73. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1178, R2=1229, Total=2407. Warn if over 250 bubbles per interval.
17-03-17 23:20:27.228 -07 000000448 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 980 ms to get response, and 1002 ms overall
17-03-17 23:20:27.228 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 970 ms to get response, and 995 ms overall
17-03-17 23:20:27.228 -07 000000448 INF: FPGA: Recv ZDACR 29765
17-03-17 23:20:27.238 -07 000000429 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:20:27.238 -07 000000429 INF: Z Motor: MoveAbsStepped took 1011 ms (did NOT wait for settling yet))
17-03-17 23:20:27.268 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:20:27.278 -07 000000448 INF: FPGA: Recv YRDPOS 144770
17-03-17 23:20:27.278 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 23:20:27.278 -07 000000501 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:20:27.278 -07 000000501 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 23:20:27.278 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 997 ms, distance = 0.839 mm, average velocity = 0.842 mm/sec
17-03-17 23:20:28.228 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:20:28.228 -07 000000593 INF: FPGA: Recv YRDPOS 144770
17-03-17 23:20:28.238 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:20:28.238 -07 000000501 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:20:28.258 -07 000000501 INF: Y Motor: After move to 70.702606, error = -0.014130, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:20:28.258 -07 000000501 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:20:28.258 -07 000000501 INF: Y Motor: Moved to 70.6885 after 2046 ms (table move)
17-03-17 23:20:28.268 -07 000000409 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136255 mm (DAC = 29765)
17-03-17 23:20:28.268 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:28.268 -07 000000448 INF: FPGA: Recv ZSGSRD 30506
17-03-17 23:20:28.278 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:28.278 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:28.278 -07 000000501 INF: FPGA: Recv ZSGSRD 30499
17-03-17 23:20:28.288 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:28.288 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:28.288 -07 000000593 INF: FPGA: Recv ZSGSRD 30497
17-03-17 23:20:28.298 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:28.298 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:28.298 -07 000000501 INF: FPGA: Recv ZSGSRD 30497
17-03-17 23:20:28.308 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:20:28.308 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:28.308 -07 000000547 INF: FPGA: Recv ZSGSRD 30496
17-03-17 23:20:28.318 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:28.318 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:28.318 -07 000000593 INF: FPGA: Recv ZSGSRD 30498
17-03-17 23:20:28.328 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:28.328 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:28.328 -07 000000448 INF: FPGA: Recv ZSGSRD 30500
17-03-17 23:20:28.338 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:28.338 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:28.338 -07 000000501 INF: FPGA: Recv ZSGSRD 30498
17-03-17 23:20:28.348 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:28.348 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:28.348 -07 000000448 INF: FPGA: Recv ZSGSRD 30500
17-03-17 23:20:28.358 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:28.358 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:28.358 -07 000000429 INF: FPGA: Recv ZSGSRD 30501
17-03-17 23:20:28.368 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:28.368 -07 000000409 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:20:28.368 -07 000000448 INF: FPGA: Recv ZPIEZORD 26394
17-03-17 23:20:28.378 -07 000000409 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:28.378 -07 000000409 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.4 V, since DAC is at 4.542 V. Piezo Error = -9.0 V.
17-03-17 23:20:28.378 -07 000000409 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.3 um, Read 10 ADC samples: Avg = 30499 (-135.5 uncal um), Error = 0.8 uncal um, Median = 30498 (-135.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30496 (-135.4 uncal um), Max = 30506 (-135.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 23:20:28.378 -07 000000409 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30499, posNoise = 7, negNoise = 3
17-03-17 23:20:28.378 -07 000000409 INF: Z Motor: After move to -0.136255, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:20:28.378 -07 000000409 INF: Z Motor: Settle wait time = 2041 ms, measure time = 110 ms (allowed 150 ms), total time = 2151 ms
17-03-17 23:20:28.378 -07 000000409 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 23:20:28.418 -07 000000409 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2430 ms
17-03-17 23:20:28.418 -07 000000409 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:20:28.418 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:20:28.418 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:20:28.418 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:20:28.418 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:20:28.418 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:20:28.418 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:20:28.428 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 23:20:28.428 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:20:28.428 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:20:28.428 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:20:28.438 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 23:20:28.438 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 23:20:28.438 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:20:28.478 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:20:28.678 -07 000000409 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:20:28.678 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:20:28.678 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:20:28.678 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) start.
17-03-17 23:20:28.718 -07 000000448 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:20:28.718 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-17 23:20:28.718 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 23:20:28.798 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 23:20:28.798 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:20:28.798 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 23:20:28.798 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 23:20:28.818 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:20:28.818 -07 000000593 INF: Autofocus start
17-03-17 23:20:28.818 -07 000000593 INF: MeasureProfile start
17-03-17 23:20:28.818 -07 000000409 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:20:28.828 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:20:28.828 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:20:28.828 -07 000000593 INF: MeasureProfile done
17-03-17 23:20:28.828 -07 000000593 INF: X=-117  Z correction [um]=-0.5729378
17-03-17 23:20:28.828 -07 000000593 INF: Autofocus finished
17-03-17 23:20:29.028 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:20:29.028 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:20:29.028 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6884765625, Z-position -0.136255398122702. ----------
17-03-17 23:20:29.038 -07 000000610 INF: Cycle	74	Tile	14	Exposure Settings		A	472	G	227	T	227	C	472
17-03-17 23:20:29.038 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28153, sync = True, waitForSettling = True)
17-03-17 23:20:29.038 -07 000000610 INF: Z Motor: Moving to -0.128876 mm, started at -0.136255 mm, distance = 7.38 um
17-03-17 23:20:29.038 -07 000000610 INF: FPGA: Xmit ZDACW 28153\n [Z Motor]
17-03-17 23:20:29.038 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 23:20:29.048 -07 000000610 INF: FPGA: 'ZDACW 28153' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:20:29.048 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:20:29.048 -07 000000576 INF: FPGA: Recv ZDACR 28153
17-03-17 23:20:29.058 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:29.058 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:20:29.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:29.208 -07 000000576 INF: FPGA: Recv ZSGSRD 29337
17-03-17 23:20:29.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:20:29.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:29.218 -07 000000627 INF: FPGA: Recv ZSGSRD 29348
17-03-17 23:20:29.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:29.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:29.228 -07 000000547 INF: FPGA: Recv ZSGSRD 29360
17-03-17 23:20:29.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:29.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:29.238 -07 000000541 INF: FPGA: Recv ZSGSRD 29355
17-03-17 23:20:29.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:29.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:29.248 -07 000000576 INF: FPGA: Recv ZSGSRD 29350
17-03-17 23:20:29.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:29.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:29.258 -07 000000409 INF: FPGA: Recv ZSGSRD 29354
17-03-17 23:20:29.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:29.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:29.268 -07 000000627 INF: FPGA: Recv ZSGSRD 29347
17-03-17 23:20:29.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:29.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:29.278 -07 000000501 INF: FPGA: Recv ZSGSRD 29355
17-03-17 23:20:29.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:29.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:29.288 -07 000000627 INF: FPGA: Recv ZSGSRD 29352
17-03-17 23:20:29.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:29.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:29.298 -07 000000547 INF: FPGA: Recv ZSGSRD 29345
17-03-17 23:20:29.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:29.308 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:20:29.308 -07 000000501 INF: FPGA: Recv ZPIEZORD 24813
17-03-17 23:20:29.318 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:29.318 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.296 V. Piezo Error = -10.0 V.
17-03-17 23:20:29.318 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.9 um, Read 10 ADC samples: Avg = 29350 (-128.1 uncal um), Error = 0.8 uncal um, Median = 29351 (-128.1 uncal um), StdDev = 6 (0.0 uncal um), Range = 23 (0.1 uncal um), Min = 29337 (-128.0 uncal um), Max = 29360 (-128.2 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 13 (0.1 uncal um)
17-03-17 23:20:29.318 -07 000000610 INF: Z Motor: ADC noise = 13, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29350, posNoise = 10, negNoise = 13
17-03-17 23:20:29.318 -07 000000610 INF: Z Motor: After move to -0.128876, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:20:29.318 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 23:20:29.318 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:20:29.318 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:20:29.318 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:20:29.318 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:20:29.318 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:20:29.318 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:20:29.318 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:20:29.318 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:20:29.318 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:20:29.318 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:20:29.328 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 23:20:29.328 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:20:29.328 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 23:20:29.328 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:20:29.328 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:20:29.328 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:20:29.338 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 23:20:29.338 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 23:20:29.338 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 23:20:29.338 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 23:20:29.348 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 472 472 227 227 28329 150\n [Camera]
17-03-17 23:20:29.428 -07 000000593 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 74, FrontChillerTemperature: 4.045313,
17-03-17 23:20:29.548 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:20:30.018 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 664
17-03-17 23:20:30.018 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 664
17-03-17 23:20:30.018 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 664
17-03-17 23:20:30.018 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 664
17-03-17 23:20:30.018 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:20:30.018 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:20:30.018 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:20:30.018 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 23:20:30.018 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:20:30.018 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 23:20:30.208 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28329 860
17-03-17 23:20:30.358 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1007
17-03-17 23:20:30.418 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 23:20:30.418 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 23:20:30.418 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:20:30.418 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 23:20:30.418 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 23:20:30.418 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:20:30.428 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:20:30.428 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:20:30.428 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 23:20:30.438 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 23:20:30.588 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1234
17-03-17 23:20:30.588 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1234
17-03-17 23:20:30.588 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:20:30.588 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:20:30.588 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 23:20:30.588 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1234
17-03-17 23:20:30.588 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1234
17-03-17 23:20:30.588 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:20:30.588 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:20:30.588 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 23:20:30.778 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP 1427
17-03-17 23:20:30.778 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:20:30.778 -07 000000610 INF: FPGA: 'CAMDBLSNAP 472 472 227 227 28329 150' command took 2 ms to send, 1424 ms to get response, and 1434 ms overall
17-03-17 23:20:30.778 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:20:30.778 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6884765625, Z-Position -0.128873978371819. ------
17-03-17 23:20:30.778 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:20:30.778 -07 000000409 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13558 mm
17-03-17 23:20:30.778 -07 000000409 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:20:30.788 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 23:20:30.788 -07 000000576 INF: Y Motor: Moving to 71.5326 mm, started at 70.6885 mm, delta = 0.8441 mm
17-03-17 23:20:30.788 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:20:30.998 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 407 ms.
17-03-17 23:20:30.998 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 23:20:30.998 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:20:30.998 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 406 ms.
17-03-17 23:20:30.998 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 23:20:30.998 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:20:30.998 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:20:31.008 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 23:20:31.008 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 416 ms.
17-03-17 23:20:31.008 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-17 23:20:31.018 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:20:31.018 -07 000000627 INF: FPGA: Recv YRDPOS 144770
17-03-17 23:20:31.018 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 230 ms to get response, and 233 ms overall
17-03-17 23:20:31.018 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 222 ms to get response, and 227 ms overall
17-03-17 23:20:31.018 -07 000000576 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:20:31.018 -07 000000576 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:20:31.018 -07 000000576 INF: Y Motor: Moving 1351 steps-29
17-03-17 23:20:31.018 -07 000000448 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:20:31.018 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 29618, sync = True, waitForSettling = False)
17-03-17 23:20:31.018 -07 000000627 INF: Z Motor: Moving to -0.135583 mm, started at -0.128874 mm, distance = -6.71 um
17-03-17 23:20:31.028 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:20:31.038 -07 000000627 INF: FPGA: Xmit ZDACW 29618\n [Z Motor]
17-03-17 23:20:31.038 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 23:20:31.048 -07 000000627 INF: FPGA: 'ZDACW 29618' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 23:20:31.048 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:20:31.048 -07 000000501 INF: FPGA: Recv ZDACR 29618
17-03-17 23:20:31.058 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:31.058 -07 000000627 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-17 23:20:31.218 -07 000000486 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:20:31.218 -07 000000448 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 196 ms to get response, and 203 ms overall
17-03-17 23:20:31.398 -07 000000459 INF: FPGA: Recv YMVTILE
17-03-17 23:20:31.398 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-17 23:20:31.438 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:20:31.448 -07 000000486 INF: FPGA: Recv YRDPOS 146471
17-03-17 23:20:31.448 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 23:20:31.448 -07 000000576 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:20:31.448 -07 000000576 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 23:20:31.448 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 385 ms, distance = 0.844 mm, average velocity = 2.193 mm/sec
17-03-17 23:20:32.058 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:20:32.058 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 73. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1178, R2=1229, Total=2407. Warn if over 250 bubbles per interval.
17-03-17 23:20:32.398 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:20:32.398 -07 000000482 INF: FPGA: Recv YRDPOS 146471
17-03-17 23:20:32.408 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:20:32.408 -07 000000576 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:20:32.428 -07 000000576 INF: Y Motor: After move to 71.532608, error = -0.013565, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:20:32.428 -07 000000576 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:20:32.428 -07 000000576 INF: Y Motor: Moved to 71.5190 after 1643 ms (table move)
17-03-17 23:20:32.438 -07 000000409 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135583 mm (DAC = 29618)
17-03-17 23:20:32.438 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:32.438 -07 000000459 INF: FPGA: Recv ZSGSRD 30397
17-03-17 23:20:32.448 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:20:32.448 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:32.448 -07 000000482 INF: FPGA: Recv ZSGSRD 30393
17-03-17 23:20:32.458 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:32.458 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:32.458 -07 000000486 INF: FPGA: Recv ZSGSRD 30393
17-03-17 23:20:32.468 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:32.468 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:32.468 -07 000000627 INF: FPGA: Recv ZSGSRD 30401
17-03-17 23:20:32.478 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:32.478 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:32.478 -07 000000551 INF: FPGA: Recv ZSGSRD 30401
17-03-17 23:20:32.488 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:32.488 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:32.488 -07 000000482 INF: FPGA: Recv ZSGSRD 30390
17-03-17 23:20:32.498 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:32.498 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:32.498 -07 000000448 INF: FPGA: Recv ZSGSRD 30397
17-03-17 23:20:32.508 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:32.508 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:32.508 -07 000000459 INF: FPGA: Recv ZSGSRD 30395
17-03-17 23:20:32.518 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:32.518 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:32.518 -07 000000486 INF: FPGA: Recv ZSGSRD 30394
17-03-17 23:20:32.528 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:32.528 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:32.528 -07 000000576 INF: FPGA: Recv ZSGSRD 30390
17-03-17 23:20:32.538 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:32.538 -07 000000409 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:20:32.538 -07 000000551 INF: FPGA: Recv ZPIEZORD 26327
17-03-17 23:20:32.548 -07 000000409 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:32.548 -07 000000409 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.519 V. Piezo Error = -9.0 V.
17-03-17 23:20:32.548 -07 000000409 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.6 um, Read 10 ADC samples: Avg = 30395 (-134.8 uncal um), Error = 0.8 uncal um, Median = 30394 (-134.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30390 (-134.8 uncal um), Max = 30401 (-134.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:20:32.548 -07 000000409 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30395, posNoise = 6, negNoise = 5
17-03-17 23:20:32.548 -07 000000409 INF: Z Motor: After move to -0.135583, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:20:32.548 -07 000000409 INF: Z Motor: Settle wait time = 1417 ms, measure time = 109 ms (allowed 150 ms), total time = 1526 ms
17-03-17 23:20:32.548 -07 000000409 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 23:20:32.598 -07 000000409 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1810 ms
17-03-17 23:20:32.598 -07 000000409 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:20:32.598 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:20:32.598 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:20:32.598 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:20:32.598 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:20:32.598 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:20:32.598 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:20:32.598 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:20:32.598 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:20:32.608 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:20:32.608 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:20:32.618 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 23:20:32.618 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 23:20:32.618 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:20:32.668 -07 000000486 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:20:32.868 -07 000000409 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:20:32.868 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:20:32.868 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:20:32.868 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2253754584, 0x0, 559484976) start.
17-03-17 23:20:32.908 -07 000000501 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:20:32.908 -07 000000486 INF: FPGA: Recv CAMSNAP
17-03-17 23:20:32.908 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 285 ms to get response, and 287 ms overall
17-03-17 23:20:32.988 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2253754584, 0x0, 559484976) end. Duration was 118 ms.
17-03-17 23:20:32.988 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:20:32.988 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 23:20:32.988 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms.
17-03-17 23:20:33.008 -07 000000409 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:20:33.008 -07 000000501 INF: Autofocus start
17-03-17 23:20:33.008 -07 000000501 INF: MeasureProfile start
17-03-17 23:20:33.008 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:20:33.018 -07 000000409 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:20:33.018 -07 000000409 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:20:33.018 -07 000000501 INF: MeasureProfile done
17-03-17 23:20:33.018 -07 000000501 INF: X=0  Z correction [um]=-0.02394831
17-03-17 23:20:33.018 -07 000000501 INF: Autofocus finished
17-03-17 23:20:33.218 -07 000000627 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:20:33.218 -07 000000409 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:20:33.218 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51904296875, Z-position -0.135587280059959. ----------
17-03-17 23:20:33.218 -07 000000610 INF: Cycle	74	Tile	15	Exposure Settings		A	472	G	227	T	227	C	472
17-03-17 23:20:33.228 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28126, sync = True, waitForSettling = True)
17-03-17 23:20:33.228 -07 000000610 INF: Z Motor: Moving to -0.128753 mm, started at -0.135587 mm, distance = 6.83 um
17-03-17 23:20:33.228 -07 000000610 INF: FPGA: Xmit ZDACW 28126\n [Z Motor]
17-03-17 23:20:33.228 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 23:20:33.238 -07 000000610 INF: FPGA: 'ZDACW 28126' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:20:33.238 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:20:33.238 -07 000000501 INF: FPGA: Recv ZDACR 28126
17-03-17 23:20:33.248 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:33.248 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:20:33.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:33.398 -07 000000482 INF: FPGA: Recv ZSGSRD 29335
17-03-17 23:20:33.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:20:33.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:33.408 -07 000000486 INF: FPGA: Recv ZSGSRD 29335
17-03-17 23:20:33.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:20:33.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:33.418 -07 000000409 INF: FPGA: Recv ZSGSRD 29330
17-03-17 23:20:33.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:33.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:33.428 -07 000000459 INF: FPGA: Recv ZSGSRD 29323
17-03-17 23:20:33.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:33.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:33.438 -07 000000576 INF: FPGA: Recv ZSGSRD 29337
17-03-17 23:20:33.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:33.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:33.448 -07 000000551 INF: FPGA: Recv ZSGSRD 29329
17-03-17 23:20:33.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:33.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:33.458 -07 000000576 INF: FPGA: Recv ZSGSRD 29330
17-03-17 23:20:33.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:33.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:33.468 -07 000000409 INF: FPGA: Recv ZSGSRD 29334
17-03-17 23:20:33.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:33.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:33.478 -07 000000482 INF: FPGA: Recv ZSGSRD 29335
17-03-17 23:20:33.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:33.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:33.488 -07 000000459 INF: FPGA: Recv ZSGSRD 29332
17-03-17 23:20:33.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:33.498 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:20:33.498 -07 000000501 INF: FPGA: Recv ZPIEZORD 24871
17-03-17 23:20:33.508 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:33.508 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.292 V. Piezo Error = -9.8 V.
17-03-17 23:20:33.508 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.8 um, Read 10 ADC samples: Avg = 29332 (-128.0 uncal um), Error = 0.8 uncal um, Median = 29333 (-128.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29323 (-127.9 uncal um), Max = 29337 (-128.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 23:20:33.508 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29332, posNoise = 5, negNoise = 9
17-03-17 23:20:33.508 -07 000000610 INF: Z Motor: After move to -0.128753, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:20:33.508 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 23:20:33.508 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:20:33.508 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:20:33.508 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:20:33.508 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:20:33.508 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:20:33.508 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:20:33.508 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:20:33.508 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:20:33.508 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:20:33.508 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:20:33.508 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:20:33.508 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:20:33.518 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:20:33.518 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:20:33.518 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:20:33.518 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:20:33.528 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 23:20:33.528 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:20:33.528 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 23:20:33.528 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:20:33.528 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 472 472 227 227 28302 150\n [Camera]
17-03-17 23:20:33.728 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:20:34.198 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 664
17-03-17 23:20:34.198 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 664
17-03-17 23:20:34.198 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 664
17-03-17 23:20:34.198 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 664
17-03-17 23:20:34.198 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:20:34.198 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:20:34.198 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-17 23:20:34.198 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:20:34.198 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:20:34.198 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-17 23:20:34.388 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28302 857
17-03-17 23:20:34.538 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1007
17-03-17 23:20:34.598 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 23:20:34.598 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 23:20:34.608 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:20:34.608 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 23:20:34.608 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 23:20:34.608 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:20:34.608 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:20:34.608 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 23:20:34.608 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:20:34.618 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 23:20:34.768 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1234
17-03-17 23:20:34.768 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1234
17-03-17 23:20:34.768 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:20:34.768 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:20:34.768 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-17 23:20:34.768 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1234
17-03-17 23:20:34.768 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1234
17-03-17 23:20:34.768 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:20:34.918 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:20:34.918 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 23:20:34.918 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 74, FrontChillerTemperature: 4.02213,
17-03-17 23:20:34.958 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1427
17-03-17 23:20:34.958 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:20:34.958 -07 000000610 INF: FPGA: 'CAMDBLSNAP 472 472 227 227 28302 150' command took 2 ms to send, 1427 ms to get response, and 1434 ms overall
17-03-17 23:20:34.958 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:20:34.958 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51904296875, Z-Position -0.128758342553267. ------
17-03-17 23:20:34.968 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13516 mm
17-03-17 23:20:34.968 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:20:34.968 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:20:34.968 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 23:20:34.968 -07 000000501 INF: Y Motor: Moving to 72.3626 mm, started at 71.5190 mm, delta = 0.8436 mm
17-03-17 23:20:34.968 -07 000000482 INF: Z Motor: Entering MoveAbsStepped (DAC = 29525, sync = True, waitForSettling = False)
17-03-17 23:20:34.968 -07 000000482 INF: Z Motor: Moving to -0.135157 mm, started at -0.128758 mm, distance = -6.40 um
17-03-17 23:20:34.978 -07 000000482 INF: FPGA: Xmit ZDACW 29525\n [Z Motor]
17-03-17 23:20:34.988 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:20:35.188 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 414 ms.
17-03-17 23:20:35.188 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 415 ms.
17-03-17 23:20:35.188 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:20:35.188 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 23:20:35.188 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 421 ms.
17-03-17 23:20:35.198 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:20:35.198 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 23:20:35.198 -07 000000448 INF: FPGA: Recv YRDPOS 146472
17-03-17 23:20:35.198 -07 000000482 INF: FPGA: 'ZDACW 29525' command took 0 ms to send, 219 ms to get response, and 232 ms overall
17-03-17 23:20:35.198 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 209 ms to get response, and 233 ms overall
17-03-17 23:20:35.208 -07 000000501 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:20:35.208 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 229 ms to get response, and 236 ms overall
17-03-17 23:20:35.208 -07 000000482 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:20:35.208 -07 000000448 INF: FPGA: Recv ZDACR 29525
17-03-17 23:20:35.208 -07 000000501 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:20:35.208 -07 000000501 INF: Y Motor: Moving 1349 steps-28
17-03-17 23:20:35.218 -07 000000482 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:20:35.218 -07 000000482 INF: Z Motor: MoveAbsStepped took 243 ms (did NOT wait for settling yet))
17-03-17 23:20:35.218 -07 000000627 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:20:35.228 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:20:35.308 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 23:20:35.308 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 23:20:35.308 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:20:35.308 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 23:20:35.318 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 543 ms.
17-03-17 23:20:35.418 -07 000000415 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:20:35.418 -07 000000627 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 23:20:35.598 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 23:20:35.598 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 23:20:35.638 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:20:35.648 -07 000000482 INF: FPGA: Recv YRDPOS 148172
17-03-17 23:20:35.658 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:20:35.658 -07 000000501 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:20:35.658 -07 000000501 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 23:20:35.658 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.844 mm, average velocity = 2.141 mm/sec
17-03-17 23:20:36.608 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:20:36.608 -07 000000561 INF: FPGA: Recv YRDPOS 148172
17-03-17 23:20:36.618 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:20:36.618 -07 000000501 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:20:36.648 -07 000000501 INF: Y Motor: After move to 72.362610, error = -0.013000, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:20:36.648 -07 000000501 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:20:36.648 -07 000000501 INF: Y Motor: Moved to 72.3496 after 1675 ms (table move)
17-03-17 23:20:36.648 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135157 mm (DAC = 29525)
17-03-17 23:20:36.648 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:36.648 -07 000000459 INF: FPGA: Recv ZSGSRD 30326
17-03-17 23:20:36.658 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:20:36.658 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:36.658 -07 000000415 INF: FPGA: Recv ZSGSRD 30326
17-03-17 23:20:36.668 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:36.668 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:36.668 -07 000000561 INF: FPGA: Recv ZSGSRD 30320
17-03-17 23:20:36.678 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:36.678 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:36.678 -07 000000415 INF: FPGA: Recv ZSGSRD 30324
17-03-17 23:20:36.688 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:36.688 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:36.688 -07 000000501 INF: FPGA: Recv ZSGSRD 30323
17-03-17 23:20:36.698 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:36.698 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:36.698 -07 000000415 INF: FPGA: Recv ZSGSRD 30331
17-03-17 23:20:36.708 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:36.708 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:36.708 -07 000000501 INF: FPGA: Recv ZSGSRD 30335
17-03-17 23:20:36.718 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:36.718 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:36.718 -07 000000482 INF: FPGA: Recv ZSGSRD 30325
17-03-17 23:20:36.728 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:36.728 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:36.728 -07 000000459 INF: FPGA: Recv ZSGSRD 30325
17-03-17 23:20:36.738 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:36.738 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:36.738 -07 000000482 INF: FPGA: Recv ZSGSRD 30327
17-03-17 23:20:36.748 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:36.748 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:20:36.748 -07 000000459 INF: FPGA: Recv ZPIEZORD 26228
17-03-17 23:20:36.758 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:36.758 -07 000000576 INF: Z Motor: Piezo is near 36.0 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.505 V. Piezo Error = -9.0 V.
17-03-17 23:20:36.758 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.2 um, Read 10 ADC samples: Avg = 30326 (-134.4 uncal um), Error = 0.8 uncal um, Median = 30326 (-134.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30320 (-134.3 uncal um), Max = 30335 (-134.4 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:20:36.758 -07 000000576 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30326, posNoise = 9, negNoise = 6
17-03-17 23:20:36.758 -07 000000576 INF: Z Motor: After move to -0.135157, error = 0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:20:36.758 -07 000000576 INF: Z Motor: Settle wait time = 1678 ms, measure time = 105 ms (allowed 150 ms), total time = 1783 ms
17-03-17 23:20:36.758 -07 000000576 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 23:20:36.808 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1836 ms
17-03-17 23:20:36.808 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:20:36.808 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:20:36.808 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:20:36.808 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:20:36.808 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:20:36.808 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:20:36.808 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:20:36.808 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:20:36.808 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:20:36.818 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:20:36.818 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:20:36.818 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 23:20:36.818 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 23:20:36.828 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:20:36.868 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:20:37.058 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:20:37.058 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 73. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1178, R2=1229, Total=2407. Warn if over 250 bubbles per interval.
17-03-17 23:20:37.068 -07 000000482 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:20:37.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:20:37.068 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:20:37.068 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-17 23:20:37.108 -07 000000415 INF: FPGA: Recv @CAMSNAP 282
17-03-17 23:20:37.108 -07 000000459 INF: FPGA: Recv CAMSNAP
17-03-17 23:20:37.108 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 287 ms overall
17-03-17 23:20:37.188 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 23:20:37.188 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:20:37.188 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:20:37.188 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 23:20:37.208 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:20:37.208 -07 000000415 INF: Autofocus start
17-03-17 23:20:37.208 -07 000000415 INF: MeasureProfile start
17-03-17 23:20:37.218 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:20:37.218 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:20:37.218 -07 000000459 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:20:37.228 -07 000000415 INF: MeasureProfile done
17-03-17 23:20:37.228 -07 000000415 INF: X=0  Z correction [um]=-0.02394831
17-03-17 23:20:37.228 -07 000000415 INF: Autofocus finished
17-03-17 23:20:37.418 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:20:37.418 -07 000000459 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:20:37.418 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.349609375, Z-position -0.135144009422178. ----------
17-03-17 23:20:37.428 -07 000000610 INF: Cycle	74	Tile	16	Exposure Settings		A	472	G	227	T	227	C	472
17-03-17 23:20:37.428 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28033, sync = True, waitForSettling = True)
17-03-17 23:20:37.428 -07 000000610 INF: Z Motor: Moving to -0.128327 mm, started at -0.135144 mm, distance = 6.82 um
17-03-17 23:20:37.428 -07 000000610 INF: FPGA: Xmit ZDACW 28033\n [Z Motor]
17-03-17 23:20:37.428 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 23:20:37.438 -07 000000610 INF: FPGA: 'ZDACW 28033' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:20:37.438 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:20:37.438 -07 000000501 INF: FPGA: Recv ZDACR 28033
17-03-17 23:20:37.448 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:37.448 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:20:37.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:37.598 -07 000000627 INF: FPGA: Recv ZSGSRD 29268
17-03-17 23:20:37.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:20:37.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:37.608 -07 000000576 INF: FPGA: Recv ZSGSRD 29265
17-03-17 23:20:37.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:37.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:37.618 -07 000000561 INF: FPGA: Recv ZSGSRD 29262
17-03-17 23:20:37.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:37.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:37.628 -07 000000501 INF: FPGA: Recv ZSGSRD 29265
17-03-17 23:20:37.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:37.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:37.638 -07 000000415 INF: FPGA: Recv ZSGSRD 29265
17-03-17 23:20:37.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:37.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:37.648 -07 000000576 INF: FPGA: Recv ZSGSRD 29267
17-03-17 23:20:37.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:37.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:37.658 -07 000000448 INF: FPGA: Recv ZSGSRD 29270
17-03-17 23:20:37.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:37.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:37.668 -07 000000459 INF: FPGA: Recv ZSGSRD 29265
17-03-17 23:20:37.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:37.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:37.678 -07 000000482 INF: FPGA: Recv ZSGSRD 29270
17-03-17 23:20:37.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:37.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:37.688 -07 000000415 INF: FPGA: Recv ZSGSRD 29263
17-03-17 23:20:37.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:37.698 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:20:37.698 -07 000000561 INF: FPGA: Recv ZPIEZORD 24812
17-03-17 23:20:37.708 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:37.708 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.278 V. Piezo Error = -9.8 V.
17-03-17 23:20:37.708 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.3 um, Read 10 ADC samples: Avg = 29266 (-127.6 uncal um), Error = 0.8 uncal um, Median = 29265 (-127.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29262 (-127.5 uncal um), Max = 29270 (-127.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:20:37.708 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29266, posNoise = 4, negNoise = 4
17-03-17 23:20:37.708 -07 000000610 INF: Z Motor: After move to -0.128327, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:20:37.708 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 23:20:37.708 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:20:37.708 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:20:37.708 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:20:37.708 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:20:37.708 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:20:37.708 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:20:37.708 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:20:37.708 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:20:37.708 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:20:37.708 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:20:37.708 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:20:37.708 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:20:37.718 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:20:37.718 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:20:37.718 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:20:37.718 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:20:37.728 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 23:20:37.728 -07 000000415 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:20:37.728 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 23:20:37.728 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 23:20:37.728 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 472 472 227 227 28209 150\n [Camera]
17-03-17 23:20:37.928 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:20:38.398 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 664
17-03-17 23:20:38.398 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 664
17-03-17 23:20:38.398 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:20:38.398 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 664
17-03-17 23:20:38.398 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 664
17-03-17 23:20:38.408 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:20:38.408 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 23:20:38.408 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:20:38.418 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:20:38.418 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 23:20:38.588 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28209 857
17-03-17 23:20:38.738 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1007
17-03-17 23:20:38.808 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 23:20:38.808 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 23:20:38.808 -07 000000415 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:20:38.808 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:20:38.808 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 23:20:38.808 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 23:20:38.818 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 23:20:38.818 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:20:38.818 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:20:38.828 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 23:20:38.968 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1234
17-03-17 23:20:38.968 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1234
17-03-17 23:20:38.968 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:20:38.968 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1234
17-03-17 23:20:38.968 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1234
17-03-17 23:20:38.978 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:20:39.088 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:20:39.088 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 23:20:39.088 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:20:39.088 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 23:20:39.158 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP 1427
17-03-17 23:20:39.158 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:20:39.158 -07 000000610 INF: FPGA: 'CAMDBLSNAP 472 472 227 227 28209 150' command took 2 ms to send, 1428 ms to get response, and 1434 ms overall
17-03-17 23:20:39.168 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:20:39.168 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.349609375, Z-Position -0.128334344551911. ------
17-03-17 23:20:39.168 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:20:39.168 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13489 mm
17-03-17 23:20:39.168 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:20:39.168 -07 000000415 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 23:20:39.168 -07 000000415 INF: Y Motor: Moving to 73.1926 mm, started at 72.3496 mm, delta = 0.8430 mm
17-03-17 23:20:39.168 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 29466, sync = True, waitForSettling = False)
17-03-17 23:20:39.168 -07 000000576 INF: Z Motor: Moving to -0.134887 mm, started at -0.128334 mm, distance = -6.55 um
17-03-17 23:20:39.178 -07 000000576 INF: FPGA: Xmit ZDACW 29466\n [Z Motor]
17-03-17 23:20:39.188 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:20:39.488 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 23:20:39.488 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 23:20:39.488 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:20:39.488 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 23:20:39.488 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 23:20:39.488 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:20:39.488 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:20:39.488 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 521 ms.
17-03-17 23:20:39.488 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:20:39.498 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 528 ms.
17-03-17 23:20:39.508 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:20:39.508 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 23:20:39.508 -07 000000482 INF: FPGA: Recv YRDPOS 148173
17-03-17 23:20:39.508 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 311 ms to get response, and 334 ms overall
17-03-17 23:20:39.508 -07 000000415 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:20:39.508 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 331 ms to get response, and 337 ms overall
17-03-17 23:20:39.508 -07 000000576 INF: FPGA: 'ZDACW 29466' command took 0 ms to send, 321 ms to get response, and 334 ms overall
17-03-17 23:20:39.508 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:20:39.508 -07 000000482 INF: FPGA: Recv ZDACR 29466
17-03-17 23:20:39.508 -07 000000415 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:20:39.508 -07 000000415 INF: Y Motor: Moving 1348 steps-27
17-03-17 23:20:39.518 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:20:39.518 -07 000000415 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:20:39.518 -07 000000576 INF: Z Motor: MoveAbsStepped took 343 ms (did NOT wait for settling yet))
17-03-17 23:20:39.528 -07 000000448 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:20:39.728 -07 000000482 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:20:39.728 -07 000000448 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 220 ms overall
17-03-17 23:20:39.888 -07 000000482 INF: FPGA: Recv YMVTILE
17-03-17 23:20:39.888 -07 000000415 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 367 ms to get response, and 378 ms overall
17-03-17 23:20:39.928 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:20:39.938 -07 000000576 INF: FPGA: Recv YRDPOS 149865
17-03-17 23:20:39.938 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 23:20:39.938 -07 000000415 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:20:39.938 -07 000000415 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-17 23:20:39.938 -07 000000415 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.843 mm, average velocity = 2.230 mm/sec
17-03-17 23:20:40.288 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 74, FrontChillerTemperature: 3.99219,
17-03-17 23:20:40.888 -07 000000415 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:20:40.888 -07 000000448 INF: FPGA: Recv YRDPOS 149865
17-03-17 23:20:40.898 -07 000000415 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:40.898 -07 000000415 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:20:40.918 -07 000000415 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:20:40.918 -07 000000415 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:20:40.918 -07 000000415 INF: Y Motor: Moved to 73.1763 after 1749 ms (table move)
17-03-17 23:20:40.918 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134887 mm (DAC = 29466)
17-03-17 23:20:40.928 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:40.928 -07 000000482 INF: FPGA: Recv ZSGSRD 30283
17-03-17 23:20:40.938 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:20:40.938 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:40.938 -07 000000576 INF: FPGA: Recv ZSGSRD 30283
17-03-17 23:20:40.948 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:40.948 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:40.948 -07 000000478 INF: FPGA: Recv ZSGSRD 30290
17-03-17 23:20:40.958 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:40.958 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:40.958 -07 000000576 INF: FPGA: Recv ZSGSRD 30287
17-03-17 23:20:40.968 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:40.968 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:40.968 -07 000000415 INF: FPGA: Recv ZSGSRD 30290
17-03-17 23:20:40.978 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:40.978 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:40.978 -07 000000576 INF: FPGA: Recv ZSGSRD 30291
17-03-17 23:20:40.988 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:40.988 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:40.988 -07 000000482 INF: FPGA: Recv ZSGSRD 30289
17-03-17 23:20:40.998 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:40.998 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:40.998 -07 000000576 INF: FPGA: Recv ZSGSRD 30288
17-03-17 23:20:41.008 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:41.008 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:41.008 -07 000000482 INF: FPGA: Recv ZSGSRD 30281
17-03-17 23:20:41.018 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:41.018 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:41.018 -07 000000576 INF: FPGA: Recv ZSGSRD 30286
17-03-17 23:20:41.028 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:41.028 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:20:41.028 -07 000000482 INF: FPGA: Recv ZPIEZORD 26206
17-03-17 23:20:41.038 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:41.038 -07 000000561 INF: Z Motor: Piezo is near 36.0 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.496 V. Piezo Error = -9.0 V.
17-03-17 23:20:41.038 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.9 um, Read 10 ADC samples: Avg = 30287 (-134.1 uncal um), Error = 0.8 uncal um, Median = 30288 (-134.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30281 (-134.1 uncal um), Max = 30291 (-134.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:20:41.038 -07 000000561 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30287, posNoise = 4, negNoise = 6
17-03-17 23:20:41.038 -07 000000561 INF: Z Motor: After move to -0.134887, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:20:41.038 -07 000000561 INF: Z Motor: Settle wait time = 1752 ms, measure time = 111 ms (allowed 150 ms), total time = 1863 ms
17-03-17 23:20:41.038 -07 000000561 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 23:20:41.078 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1905 ms
17-03-17 23:20:41.078 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:20:41.078 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:20:41.078 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:20:41.078 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:20:41.078 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:20:41.078 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:20:41.078 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:20:41.088 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:20:41.088 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:20:41.088 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:20:41.088 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:20:41.088 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 23:20:41.098 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 23:20:41.098 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:20:41.138 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:20:41.338 -07 000000478 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:20:41.338 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:20:41.338 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:20:41.338 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656805360, 0x0, 559484976) start.
17-03-17 23:20:41.378 -07 000000482 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:20:41.378 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-17 23:20:41.378 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 23:20:41.458 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 656805360, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 23:20:41.458 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:20:41.458 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 23:20:41.458 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 23:20:41.478 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:20:41.478 -07 000000478 INF: Autofocus start
17-03-17 23:20:41.478 -07 000000478 INF: MeasureProfile start
17-03-17 23:20:41.478 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:20:41.488 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:20:41.488 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:20:41.488 -07 000000478 INF: MeasureProfile done
17-03-17 23:20:41.488 -07 000000478 INF: X=16  Z correction [um]=0.0530179
17-03-17 23:20:41.488 -07 000000478 INF: Autofocus finished
17-03-17 23:20:41.688 -07 000000415 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:20:41.688 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 206 ms overall
17-03-17 23:20:41.698 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.134893465148649. ----------
17-03-17 23:20:41.698 -07 000000610 INF: Cycle	74	Tile	17	Exposure Settings		A	472	G	227	T	227	C	472
17-03-17 23:20:41.698 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27990, sync = True, waitForSettling = True)
17-03-17 23:20:41.698 -07 000000610 INF: Z Motor: Moving to -0.128130 mm, started at -0.134893 mm, distance = 6.76 um
17-03-17 23:20:41.698 -07 000000610 INF: FPGA: Xmit ZDACW 27990\n [Z Motor]
17-03-17 23:20:41.698 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 23:20:41.708 -07 000000610 INF: FPGA: 'ZDACW 27990' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:20:41.708 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:20:41.708 -07 000000627 INF: FPGA: Recv ZDACR 27990
17-03-17 23:20:41.718 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:41.718 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:20:41.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:41.868 -07 000000482 INF: FPGA: Recv ZSGSRD 29241
17-03-17 23:20:41.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:20:41.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:41.878 -07 000000448 INF: FPGA: Recv ZSGSRD 29236
17-03-17 23:20:41.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:41.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:41.888 -07 000000478 INF: FPGA: Recv ZSGSRD 29237
17-03-17 23:20:41.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:41.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:41.898 -07 000000627 INF: FPGA: Recv ZSGSRD 29238
17-03-17 23:20:41.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:41.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:41.908 -07 000000462 INF: FPGA: Recv ZSGSRD 29242
17-03-17 23:20:41.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:41.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:41.918 -07 000000448 INF: FPGA: Recv ZSGSRD 29237
17-03-17 23:20:41.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:41.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:41.928 -07 000000627 INF: FPGA: Recv ZSGSRD 29244
17-03-17 23:20:41.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:41.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:41.938 -07 000000478 INF: FPGA: Recv ZSGSRD 29241
17-03-17 23:20:41.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:41.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:41.948 -07 000000415 INF: FPGA: Recv ZSGSRD 29232
17-03-17 23:20:41.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:41.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:41.958 -07 000000448 INF: FPGA: Recv ZSGSRD 29235
17-03-17 23:20:41.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:41.968 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:20:41.968 -07 000000627 INF: FPGA: Recv ZPIEZORD 24790
17-03-17 23:20:41.978 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:41.978 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.271 V. Piezo Error = -9.8 V.
17-03-17 23:20:41.978 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.1 um, Read 10 ADC samples: Avg = 29238 (-127.4 uncal um), Error = 0.7 uncal um, Median = 29238 (-127.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29232 (-127.3 uncal um), Max = 29244 (-127.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:20:41.978 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29238, posNoise = 6, negNoise = 6
17-03-17 23:20:41.978 -07 000000610 INF: Z Motor: After move to -0.128130, error = -0.000024, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:20:41.978 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 23:20:41.978 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:20:41.978 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:20:41.978 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:20:41.978 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:20:41.978 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:20:41.978 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:20:41.978 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:20:41.978 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:20:41.978 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:20:41.978 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:20:41.978 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 23:20:41.978 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:20:41.988 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:20:41.988 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:20:41.988 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 23:20:41.988 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:20:41.998 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 23:20:41.998 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:20:41.998 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 23:20:41.998 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:20:41.998 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 472 472 227 227 28167 150\n [Camera]
17-03-17 23:20:42.058 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:20:42.058 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 73. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1178, R2=1229, Total=2407. Warn if over 250 bubbles per interval.
17-03-17 23:20:42.198 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:20:42.668 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 664
17-03-17 23:20:42.668 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 664
17-03-17 23:20:42.668 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:20:42.668 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 664
17-03-17 23:20:42.668 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 664
17-03-17 23:20:42.668 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:20:42.678 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:20:42.678 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 23:20:42.678 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:20:42.678 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 23:20:42.858 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28167 857
17-03-17 23:20:43.018 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1010
17-03-17 23:20:43.068 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 23:20:43.068 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 23:20:43.068 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:20:43.068 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:20:43.068 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 23:20:43.078 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 23:20:43.078 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 23:20:43.078 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:20:43.078 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:20:43.088 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 23:20:43.238 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1234
17-03-17 23:20:43.238 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1234
17-03-17 23:20:43.238 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:20:43.238 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:20:43.238 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2468220576, 0x0, 391868352) start.
17-03-17 23:20:43.238 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1234
17-03-17 23:20:43.238 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1234
17-03-17 23:20:43.238 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:20:43.238 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:20:43.238 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2503642840, 0x0, 418435064) start.
17-03-17 23:20:43.428 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1427
17-03-17 23:20:43.428 -07 000000482 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:20:43.428 -07 000000610 INF: FPGA: 'CAMDBLSNAP 472 472 227 227 28167 150' command took 2 ms to send, 1427 ms to get response, and 1433 ms overall
17-03-17 23:20:43.428 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:20:43.428 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17626953125, Z-Position -0.128154466611942. ------
17-03-17 23:20:43.438 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:20:43.438 -07 000000482 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13450 mm
17-03-17 23:20:43.438 -07 000000482 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:20:43.438 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 23:20:43.438 -07 000000576 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-17 23:20:43.438 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 29381, sync = True, waitForSettling = False)
17-03-17 23:20:43.438 -07 000000462 INF: Z Motor: Moving to -0.134498 mm, started at -0.128154 mm, distance = -6.34 um
17-03-17 23:20:43.448 -07 000000462 INF: FPGA: Xmit ZDACW 29381\n [Z Motor]
17-03-17 23:20:43.458 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:20:43.648 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2468220576, 0x0, 391868352) end. Duration was 404 ms.
17-03-17 23:20:43.648 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 23:20:43.648 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:20:43.648 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2503642840, 0x0, 418435064) end. Duration was 403 ms.
17-03-17 23:20:43.648 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 23:20:43.648 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:20:43.648 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:20:43.648 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 23:20:43.648 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms.
17-03-17 23:20:43.658 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms.
17-03-17 23:20:43.658 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:20:43.658 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 23:20:43.658 -07 000000478 INF: FPGA: Recv YRDPOS 149865
17-03-17 23:20:43.658 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 199 ms to get response, and 221 ms overall
17-03-17 23:20:43.658 -07 000000576 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:20:43.668 -07 000000576 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:20:43.668 -07 000000576 INF: Y Motor: Moving 1354 steps-33
17-03-17 23:20:43.668 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:20:43.668 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 219 ms to get response, and 224 ms overall
17-03-17 23:20:43.668 -07 000000462 INF: FPGA: 'ZDACW 29381' command took 0 ms to send, 209 ms to get response, and 220 ms overall
17-03-17 23:20:43.678 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:20:43.678 -07 000000478 INF: FPGA: Recv ZDACR 29381
17-03-17 23:20:43.688 -07 000000415 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:20:43.688 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:20:43.688 -07 000000462 INF: Z Motor: MoveAbsStepped took 241 ms (did NOT wait for settling yet))
17-03-17 23:20:43.888 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:20:43.888 -07 000000415 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall
17-03-17 23:20:44.038 -07 000000478 INF: FPGA: Recv YMVTILE
17-03-17 23:20:44.038 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-17 23:20:44.078 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:20:44.078 -07 000000462 INF: FPGA: Recv YRDPOS 151569
17-03-17 23:20:44.088 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:44.088 -07 000000576 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:20:44.088 -07 000000576 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 23:20:44.088 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.846 mm, average velocity = 2.239 mm/sec
17-03-17 23:20:45.038 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:20:45.038 -07 000000415 INF: FPGA: Recv YRDPOS 151569
17-03-17 23:20:45.048 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:20:45.048 -07 000000576 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:20:45.068 -07 000000576 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:20:45.068 -07 000000576 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:20:45.068 -07 000000576 INF: Y Motor: Moved to 74.0083 after 1621 ms (table move)
17-03-17 23:20:45.068 -07 000000482 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134498 mm (DAC = 29381)
17-03-17 23:20:45.068 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:45.068 -07 000000415 INF: FPGA: Recv ZSGSRD 30236
17-03-17 23:20:45.078 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:20:45.078 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:45.078 -07 000000576 INF: FPGA: Recv ZSGSRD 30228
17-03-17 23:20:45.088 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:45.088 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:45.088 -07 000000561 INF: FPGA: Recv ZSGSRD 30223
17-03-17 23:20:45.098 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:45.098 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:45.098 -07 000000462 INF: FPGA: Recv ZSGSRD 30226
17-03-17 23:20:45.108 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:45.108 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:45.108 -07 000000462 INF: FPGA: Recv ZSGSRD 30234
17-03-17 23:20:45.118 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:45.118 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:45.118 -07 000000478 INF: FPGA: Recv ZSGSRD 30231
17-03-17 23:20:45.128 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:45.128 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:45.128 -07 000000576 INF: FPGA: Recv ZSGSRD 30229
17-03-17 23:20:45.138 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:45.138 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:45.138 -07 000000478 INF: FPGA: Recv ZSGSRD 30223
17-03-17 23:20:45.148 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:45.148 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:45.148 -07 000000462 INF: FPGA: Recv ZSGSRD 30222
17-03-17 23:20:45.158 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:45.158 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:45.158 -07 000000561 INF: FPGA: Recv ZSGSRD 30229
17-03-17 23:20:45.168 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:45.168 -07 000000482 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:20:45.168 -07 000000576 INF: FPGA: Recv ZPIEZORD 26121
17-03-17 23:20:45.178 -07 000000482 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:45.178 -07 000000482 INF: Z Motor: Piezo is near 35.8 V (nominally 0 to 100 V), expect near 44.8 V, since DAC is at 4.483 V. Piezo Error = -9.0 V.
17-03-17 23:20:45.178 -07 000000482 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.5 um, Read 10 ADC samples: Avg = 30228 (-133.7 uncal um), Error = 0.8 uncal um, Median = 30228 (-133.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30222 (-133.7 uncal um), Max = 30236 (-133.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:20:45.178 -07 000000482 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30228, posNoise = 8, negNoise = 6
17-03-17 23:20:45.178 -07 000000482 INF: Z Motor: After move to -0.134498, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:20:45.178 -07 000000482 INF: Z Motor: Settle wait time = 1624 ms, measure time = 108 ms (allowed 150 ms), total time = 1732 ms
17-03-17 23:20:45.178 -07 000000482 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 23:20:45.228 -07 000000482 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1784 ms
17-03-17 23:20:45.228 -07 000000482 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:20:45.228 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:20:45.228 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:20:45.238 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:20:45.238 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:20:45.238 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:20:45.238 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:20:45.238 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:20:45.238 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:20:45.238 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:20:45.238 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:20:45.248 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 23:20:45.248 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 23:20:45.248 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:20:45.298 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:20:45.498 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:20:45.498 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:20:45.498 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:20:45.608 -07 000000462 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:20:45.618 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-17 23:20:45.618 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 360 ms to get response, and 361 ms overall
17-03-17 23:20:45.618 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2539065104, 0x0, 559484976) start.
17-03-17 23:20:45.658 -07 000000593 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 74, FrontChillerTemperature: 3.989471,
17-03-17 23:20:45.728 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2539065104, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 23:20:45.728 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:20:45.728 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 23:20:45.728 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 233 ms.
17-03-17 23:20:45.818 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:20:45.818 -07 000000478 INF: Autofocus start
17-03-17 23:20:45.818 -07 000000478 INF: MeasureProfile start
17-03-17 23:20:45.818 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:20:45.828 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:20:45.828 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:20:45.828 -07 000000478 INF: MeasureProfile done
17-03-17 23:20:45.828 -07 000000478 INF: X=0  Z correction [um]=-0.02394831
17-03-17 23:20:45.828 -07 000000478 INF: Autofocus finished
17-03-17 23:20:46.028 -07 000000478 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:20:46.028 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 202 ms overall
17-03-17 23:20:46.028 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.134514436632285. ----------
17-03-17 23:20:46.028 -07 000000610 INF: Cycle	74	Tile	18	Exposure Settings		A	472	G	227	T	227	C	472
17-03-17 23:20:46.038 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27888, sync = True, waitForSettling = True)
17-03-17 23:20:46.038 -07 000000610 INF: Z Motor: Moving to -0.127663 mm, started at -0.134514 mm, distance = 6.85 um
17-03-17 23:20:46.038 -07 000000610 INF: FPGA: Xmit ZDACW 27888\n [Z Motor]
17-03-17 23:20:46.038 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 23:20:46.048 -07 000000610 INF: FPGA: 'ZDACW 27888' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:46.048 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:20:46.048 -07 000000462 INF: FPGA: Recv ZDACR 27888
17-03-17 23:20:46.058 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:46.058 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:20:46.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:46.208 -07 000000429 INF: FPGA: Recv ZSGSRD 29164
17-03-17 23:20:46.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:20:46.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:46.218 -07 000000561 INF: FPGA: Recv ZSGSRD 29160
17-03-17 23:20:46.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:46.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:46.228 -07 000000576 INF: FPGA: Recv ZSGSRD 29165
17-03-17 23:20:46.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:46.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:46.238 -07 000000561 INF: FPGA: Recv ZSGSRD 29164
17-03-17 23:20:46.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:46.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:46.248 -07 000000429 INF: FPGA: Recv ZSGSRD 29165
17-03-17 23:20:46.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:46.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:46.258 -07 000000593 INF: FPGA: Recv ZSGSRD 29163
17-03-17 23:20:46.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:46.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:46.268 -07 000000576 INF: FPGA: Recv ZSGSRD 29161
17-03-17 23:20:46.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:46.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:46.278 -07 000000482 INF: FPGA: Recv ZSGSRD 29162
17-03-17 23:20:46.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:46.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:46.288 -07 000000561 INF: FPGA: Recv ZSGSRD 29162
17-03-17 23:20:46.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:46.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:46.298 -07 000000415 INF: FPGA: Recv ZSGSRD 29160
17-03-17 23:20:46.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:46.308 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:20:46.308 -07 000000576 INF: FPGA: Recv ZPIEZORD 24724
17-03-17 23:20:46.318 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:46.318 -07 000000610 INF: Z Motor: Piezo is near 32.8 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.255 V. Piezo Error = -9.7 V.
17-03-17 23:20:46.318 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.7 um, Read 10 ADC samples: Avg = 29163 (-126.9 uncal um), Error = 0.8 uncal um, Median = 29162 (-126.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 29160 (-126.9 uncal um), Max = 29165 (-126.9 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 23:20:46.318 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29163, posNoise = 2, negNoise = 3
17-03-17 23:20:46.318 -07 000000610 INF: Z Motor: After move to -0.127663, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:20:46.318 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 23:20:46.318 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:20:46.318 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:20:46.318 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:20:46.318 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:20:46.318 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:20:46.318 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:20:46.318 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:20:46.318 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:20:46.318 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 23:20:46.318 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:20:46.318 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:20:46.318 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:20:46.318 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 23:20:46.318 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:20:46.318 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 23:20:46.328 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:20:46.338 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 23:20:46.338 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:20:46.338 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 11 ms.
17-03-17 23:20:46.338 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 23:20:46.338 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 472 472 227 227 28065 150\n [Camera]
17-03-17 23:20:46.538 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:20:47.008 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 664
17-03-17 23:20:47.008 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 664
17-03-17 23:20:47.008 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:20:47.018 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 664
17-03-17 23:20:47.018 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:20:47.018 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 23:20:47.018 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 664
17-03-17 23:20:47.018 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:20:47.028 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:20:47.028 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2468220576, 0x0, 418435064) start.
17-03-17 23:20:47.058 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:20:47.058 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 73. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1178, R2=1229, Total=2407. Warn if over 250 bubbles per interval.
17-03-17 23:20:47.198 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28065 857
17-03-17 23:20:47.348 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1007
17-03-17 23:20:47.398 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 23:20:47.398 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 23:20:47.398 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:20:47.398 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:20:47.398 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 23:20:47.398 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2468220576, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 23:20:47.408 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 23:20:47.408 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:20:47.408 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 23:20:47.418 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 23:20:47.578 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1234
17-03-17 23:20:47.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1234
17-03-17 23:20:47.578 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:20:47.578 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1234
17-03-17 23:20:47.578 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1234
17-03-17 23:20:47.588 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:20:47.588 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:20:47.588 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 23:20:47.698 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:20:47.698 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2503642840, 0x0, 391868352) start.
17-03-17 23:20:47.768 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP 1427
17-03-17 23:20:47.768 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:20:47.768 -07 000000610 INF: FPGA: 'CAMDBLSNAP 472 472 227 227 28065 150' command took 2 ms to send, 1428 ms to get response, and 1434 ms overall
17-03-17 23:20:47.778 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:20:47.778 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00830078125, Z-Position -0.12767265070131. ------
17-03-17 23:20:47.778 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:20:47.778 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13391 mm
17-03-17 23:20:47.778 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:20:47.778 -07 000000593 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 23:20:47.778 -07 000000593 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-17 23:20:47.778 -07 000000478 INF: Z Motor: Entering MoveAbsStepped (DAC = 29253, sync = True, waitForSettling = False)
17-03-17 23:20:47.778 -07 000000478 INF: Z Motor: Moving to -0.133912 mm, started at -0.127673 mm, distance = -6.24 um
17-03-17 23:20:47.788 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:20:47.798 -07 000000478 INF: FPGA: Xmit ZDACW 29253\n [Z Motor]
17-03-17 23:20:47.978 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 23:20:47.978 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 23:20:47.978 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:20:47.978 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:20:47.988 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 23:20:47.998 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:20:47.998 -07 000000576 INF: FPGA: Recv YRDPOS 151570
17-03-17 23:20:47.998 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 23:20:47.998 -07 000000478 INF: FPGA: 'ZDACW 29253' command took 0 ms to send, 194 ms to get response, and 216 ms overall
17-03-17 23:20:47.998 -07 000000478 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:20:47.998 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 214 ms to get response, and 220 ms overall
17-03-17 23:20:47.998 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 204 ms to get response, and 217 ms overall
17-03-17 23:20:47.998 -07 000000593 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:20:47.998 -07 000000576 INF: FPGA: Recv ZDACR 29253
17-03-17 23:20:48.008 -07 000000429 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:20:48.008 -07 000000478 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:20:48.008 -07 000000478 INF: Z Motor: MoveAbsStepped took 222 ms (did NOT wait for settling yet))
17-03-17 23:20:48.008 -07 000000593 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:20:48.008 -07 000000593 INF: Y Motor: Moving 1350 steps-29
17-03-17 23:20:48.018 -07 000000593 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:20:48.098 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 2503642840, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 23:20:48.098 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 23:20:48.098 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:20:48.098 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:20:48.098 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 517 ms.
17-03-17 23:20:48.208 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:20:48.208 -07 000000429 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 206 ms overall
17-03-17 23:20:48.388 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-17 23:20:48.388 -07 000000593 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 23:20:48.418 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:20:48.418 -07 000000478 INF: FPGA: Recv YRDPOS 153256
17-03-17 23:20:48.428 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:20:48.428 -07 000000593 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:20:48.428 -07 000000593 INF: Y Motor: Position error before settling (table move) = -42 encoder counts (-0.021 mm)
17-03-17 23:20:48.428 -07 000000593 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.844 mm, average velocity = 2.182 mm/sec
17-03-17 23:20:49.378 -07 000000593 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:20:49.378 -07 000000462 INF: FPGA: Recv YRDPOS 153256
17-03-17 23:20:49.388 -07 000000593 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:20:49.388 -07 000000593 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:20:49.398 -07 000000593 INF: Y Motor: After move to 74.852608, error = -0.020576, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:20:49.398 -07 000000593 INF: Y Motor: Position error after settling (table move) = -42 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:20:49.398 -07 000000593 INF: Y Motor: Moved to 74.8320 after 1622 ms (table move)
17-03-17 23:20:49.408 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133912 mm (DAC = 29253)
17-03-17 23:20:49.408 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:49.408 -07 000000462 INF: FPGA: Recv ZSGSRD 30130
17-03-17 23:20:49.418 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:20:49.418 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:49.418 -07 000000593 INF: FPGA: Recv ZSGSRD 30126
17-03-17 23:20:49.428 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:49.428 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:49.428 -07 000000618 INF: FPGA: Recv ZSGSRD 30128
17-03-17 23:20:49.438 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:49.438 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:49.438 -07 000000478 INF: FPGA: Recv ZSGSRD 30133
17-03-17 23:20:49.448 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:49.448 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:49.448 -07 000000462 INF: FPGA: Recv ZSGSRD 30138
17-03-17 23:20:49.458 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:49.458 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:49.458 -07 000000576 INF: FPGA: Recv ZSGSRD 30139
17-03-17 23:20:49.468 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:49.468 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:49.468 -07 000000462 INF: FPGA: Recv ZSGSRD 30138
17-03-17 23:20:49.478 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:49.478 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:49.478 -07 000000478 INF: FPGA: Recv ZSGSRD 30141
17-03-17 23:20:49.488 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:49.488 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:49.488 -07 000000462 INF: FPGA: Recv ZSGSRD 30139
17-03-17 23:20:49.498 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:49.498 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:49.498 -07 000000478 INF: FPGA: Recv ZSGSRD 30126
17-03-17 23:20:49.508 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:49.508 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:20:49.508 -07 000000462 INF: FPGA: Recv ZPIEZORD 26037
17-03-17 23:20:49.518 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:49.518 -07 000000561 INF: Z Motor: Piezo is near 35.6 V (nominally 0 to 100 V), expect near 44.6 V, since DAC is at 4.464 V. Piezo Error = -9.0 V.
17-03-17 23:20:49.518 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.9 um, Read 10 ADC samples: Avg = 30134 (-133.1 uncal um), Error = 0.8 uncal um, Median = 30136 (-133.1 uncal um), StdDev = 6 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30126 (-133.1 uncal um), Max = 30141 (-133.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 23:20:49.518 -07 000000561 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30134, posNoise = 7, negNoise = 8
17-03-17 23:20:49.518 -07 000000561 INF: Z Motor: After move to -0.133912, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:20:49.518 -07 000000561 INF: Z Motor: Settle wait time = 1625 ms, measure time = 107 ms (allowed 150 ms), total time = 1732 ms
17-03-17 23:20:49.518 -07 000000561 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 23:20:49.568 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1785 ms
17-03-17 23:20:49.568 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:20:49.568 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:20:49.568 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:20:49.568 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:20:49.568 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:20:49.568 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:20:49.568 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:20:49.568 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:20:49.568 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:20:49.578 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:20:49.578 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:20:49.578 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 23:20:49.578 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 23:20:49.588 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:20:49.638 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:20:49.828 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:20:49.838 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:20:49.838 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:20:49.838 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) start.
17-03-17 23:20:49.868 -07 000000478 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:20:49.878 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-17 23:20:49.878 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 288 ms overall
17-03-17 23:20:49.958 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 639799168, 0x0, 559484976) end. Duration was 122 ms.
17-03-17 23:20:49.958 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:20:49.958 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 23:20:49.958 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 125 ms.
17-03-17 23:20:49.978 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:20:49.978 -07 000000618 INF: Autofocus start
17-03-17 23:20:49.978 -07 000000618 INF: MeasureProfile start
17-03-17 23:20:49.978 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:20:49.988 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:20:49.988 -07 000000593 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:20:49.988 -07 000000618 INF: MeasureProfile done
17-03-17 23:20:49.988 -07 000000618 INF: X=-48  Z correction [um]=-0.2370583
17-03-17 23:20:49.988 -07 000000618 INF: Autofocus finished
17-03-17 23:20:50.188 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:20:50.188 -07 000000593 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:20:50.188 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83203125, Z-position -0.13391056069096. ----------
17-03-17 23:20:50.198 -07 000000610 INF: Cycle	74	Tile	19	Exposure Settings		A	472	G	227	T	227	C	472
17-03-17 23:20:50.198 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27714, sync = True, waitForSettling = True)
17-03-17 23:20:50.198 -07 000000610 INF: Z Motor: Moving to -0.126867 mm, started at -0.133911 mm, distance = 7.04 um
17-03-17 23:20:50.198 -07 000000610 INF: FPGA: Xmit ZDACW 27714\n [Z Motor]
17-03-17 23:20:50.198 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 23:20:50.208 -07 000000610 INF: FPGA: 'ZDACW 27714' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:20:50.208 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:20:50.208 -07 000000576 INF: FPGA: Recv ZDACR 27714
17-03-17 23:20:50.218 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:50.218 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:20:50.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:50.368 -07 000000478 INF: FPGA: Recv ZSGSRD 29039
17-03-17 23:20:50.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:20:50.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:50.378 -07 000000561 INF: FPGA: Recv ZSGSRD 29039
17-03-17 23:20:50.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:50.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:50.388 -07 000000429 INF: FPGA: Recv ZSGSRD 29041
17-03-17 23:20:50.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:50.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:50.398 -07 000000561 INF: FPGA: Recv ZSGSRD 29035
17-03-17 23:20:50.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:50.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:50.408 -07 000000429 INF: FPGA: Recv ZSGSRD 29040
17-03-17 23:20:50.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:50.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:50.418 -07 000000618 INF: FPGA: Recv ZSGSRD 29045
17-03-17 23:20:50.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:50.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:50.428 -07 000000478 INF: FPGA: Recv ZSGSRD 29037
17-03-17 23:20:50.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:50.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:50.438 -07 000000576 INF: FPGA: Recv ZSGSRD 29041
17-03-17 23:20:50.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:50.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:50.448 -07 000000462 INF: FPGA: Recv ZSGSRD 29038
17-03-17 23:20:50.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:50.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:20:50.458 -07 000000429 INF: FPGA: Recv ZSGSRD 29039
17-03-17 23:20:50.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:50.468 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:20:50.468 -07 000000593 INF: FPGA: Recv ZPIEZORD 24585
17-03-17 23:20:50.478 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:20:50.478 -07 000000610 INF: Z Motor: Piezo is near 32.5 V (nominally 0 to 100 V), expect near 42.3 V, since DAC is at 4.229 V. Piezo Error = -9.8 V.
17-03-17 23:20:50.478 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.9 um, Read 10 ADC samples: Avg = 29039 (-126.1 uncal um), Error = 0.8 uncal um, Median = 29039 (-126.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29035 (-126.1 uncal um), Max = 29045 (-126.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:20:50.478 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29039, posNoise = 6, negNoise = 4
17-03-17 23:20:50.478 -07 000000610 INF: Z Motor: After move to -0.126867, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:20:50.478 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 23:20:50.478 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:20:50.478 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:20:50.478 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:20:50.478 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:20:50.478 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:20:50.478 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:20:50.478 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:20:50.478 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:20:50.478 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:20:50.478 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:20:50.478 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:20:50.478 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:20:50.488 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 23:20:50.488 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:20:50.488 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:20:50.488 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:20:50.498 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 23:20:50.498 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 23:20:50.498 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 23:20:50.498 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:20:50.498 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 472 472 227 227 27891 150\n [Camera]
17-03-17 23:20:50.698 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:20:51.038 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 74, FrontChillerTemperature: 4.007176,
17-03-17 23:20:51.168 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 664
17-03-17 23:20:51.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 664
17-03-17 23:20:51.168 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:20:51.168 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 664
17-03-17 23:20:51.178 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 664
17-03-17 23:20:51.178 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:20:51.178 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:20:51.178 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 23:20:51.178 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:20:51.178 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2468220576, 0x0, 418435064) start.
17-03-17 23:20:51.358 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27891 857
17-03-17 23:20:51.518 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1007
17-03-17 23:20:51.578 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 23:20:51.578 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 23:20:51.578 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:20:51.578 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2468220576, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 23:20:51.578 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 23:20:51.578 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:20:51.578 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:20:51.578 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 23:20:51.578 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:20:51.588 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 23:20:51.738 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1234
17-03-17 23:20:51.738 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1234
17-03-17 23:20:51.738 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:20:51.738 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:20:51.738 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-17 23:20:51.738 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1234
17-03-17 23:20:51.738 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1234
17-03-17 23:20:51.748 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:20:51.748 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:20:51.748 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-17 23:20:51.928 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP 1427
17-03-17 23:20:51.928 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:20:51.928 -07 000000610 INF: FPGA: 'CAMDBLSNAP 472 472 227 227 27891 150' command took 2 ms to send, 1428 ms to get response, and 1434 ms overall
17-03-17 23:20:52.058 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:20:52.058 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 73. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1178, R2=1229, Total=2407. Warn if over 250 bubbles per interval.
17-03-17 23:20:52.148 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 404 ms.
17-03-17 23:20:52.148 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 23:20:52.148 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:20:52.148 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 403 ms.
17-03-17 23:20:52.148 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 23:20:52.148 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:20:52.148 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:20:52.158 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 23:20:52.158 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-17 23:20:52.158 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 23:20:52.158 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 23:20:52.198 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 23:20:52.198 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 23:20:52.238 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-17 23:20:52.258 -07 000000610 INF: Enabling Skipping AutoFocus in the next 1 cycles.
17-03-17 23:20:52.258 -07 000000610 INF: Imaging Cycle 74: ScanTilesCommand Cycle 74 time end. Duration was 169430 ms.
17-03-17 23:20:52.258 -07 000000610 INF: =================== Cycle #74 ===================
17-03-17 23:20:52.258 -07 000000610 INF: ===================  ===================
17-03-17 23:20:52.258 -07 000000593 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 23:20:52.258 -07 000000462 INF: FPGA: Recv EXLED1ADCR 25
17-03-17 23:20:52.268 -07 000000593 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:20:52.268 -07 000000593 INF: GreenLED: Using Green data: Photodiode ADC 25 --> 0.0 mW (old method), or 1.8 mW (new method). Difference = 1.8 mW
17-03-17 23:20:52.268 -07 000000593 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 74, FrontChillerTemperature: 4.007176, FrontChillerHeatSinkTemperature: 0.407199, AmbientTemperature: 18.70543, FlowCellCompartmentTemperature: 21.98817, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.32435, GreenLEDSensorTemperature: 26.54346, PhotodiodePowerAdcGreen: 25, PhotodiodePowerMwGreen: 1.835864
17-03-17 23:20:52.318 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.