17-03-17 23:20:52.368 -07 000000610 INF: =================== Cycle #75 ===================
17-03-17 23:20:52.368 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-17 23:20:52.368 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8320 mm, delta = 0.5485 mm
17-03-17 23:20:52.368 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:20:52.378 -07 000000462 INF: FPGA: Recv YRDPOS 153256
17-03-17 23:20:52.378 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 23:20:52.378 -07 000000610 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:20:52.378 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-17 23:20:52.378 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-17 23:20:52.378 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-17 23:20:52.498 -07 000000501 INF: FPGA: Recv YMVTO 154379 878
17-03-17 23:20:52.498 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 110 ms to get response, and 118 ms overall
17-03-17 23:20:52.498 -07 000000610 INF: Y Motor: Position error before settling = 0 encoder counts (0.000 mm)
17-03-17 23:20:52.498 -07 000000610 INF: Y Motor: To move from 74.832 to 75.381 (0.549 mm) should take 877 steps, but required 878 steps (0.549 mm). Slippage = 0.001 mm (0.00%).
17-03-17 23:20:52.498 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 118 ms, distance = 0.549 mm, average velocity = 4.649 mm/sec
17-03-17 23:20:55.498 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:20:55.498 -07 000000551 INF: FPGA: Recv YRDPOS 154387
17-03-17 23:20:55.508 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:20:55.508 -07 000000610 INF: Y Motor: Encoder = 154387 = motor step 120614.8 = 75.3843 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:20:55.528 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.003697, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:20:55.528 -07 000000610 INF: Y Motor: Position error after settling = 8 encoder counts (0.004 mm), Delta during settling = 8 counts (0.004 mm)
17-03-17 23:20:55.528 -07 000000610 INF: Y Motor: Moved to 75.3843 after 3151 ms
17-03-17 23:20:55.528 -07 000000610 INF: =================== Cycle #75, Flow Cell Temp 60° ===================
17-03-17 23:20:55.528 -07 000000610 INF: =================== Cycle #75, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-17 23:20:55.528 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-17 23:20:55.538 -07 000000593 INF: FPGA: Recv TEC2TEMP 
17-03-17 23:20:55.538 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 23:20:55.538 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 23:20:55.538 -07 000000576 INF: FPGA: Recv TEC2EN 
17-03-17 23:20:55.548 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:20:55.548 -07 000000610 INF: =================== Cycle #75, Flow Cell Temp 60° ===================
17-03-17 23:20:55.548 -07 000000610 INF: =================== Cycle #75 ===================
17-03-17 23:20:55.548 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 23:20:55.548 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:20:55.578 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 23:20:55.578 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-17 23:20:55.578 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 23:20:55.878 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 23:20:55.898 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 23:20:55.898 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 23:20:55.948 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:20:55.968 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 23:20:55.968 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 23:20:56.068 -07 000000610 INF: =================== Cycle #75, Pumping Reagent PR2 (3) ===================
17-03-17 23:20:56.068 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 23:20:56.068 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:20:56.098 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 23:20:56.098 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 23:20:56.098 -07 000000610 INF: =================== Cycle #75, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 23:20:56.228 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 23:20:56.268 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:20:56.398 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 75, FrontChillerTemperature: 4.012614,
17-03-17 23:20:57.058 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 23:20:57.058 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 74. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1178, R2=1230, Total=2408. Warn if over 250 bubbles per interval.
17-03-17 23:20:59.398 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:20:59.428 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:20:59.848 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:20:59.878 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:21:00.298 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:21:00.328 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:21:00.328 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 23:21:00.328 -07 000000610 INF: =================== Cycle #75, Pumping Reagent PR2 (3) ===================
17-03-17 23:21:00.458 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:21:00.488 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 23:21:00.488 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 23:21:00.618 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:21:00.648 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 23:21:00.648 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 23:21:00.648 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 23:21:00.778 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 23:21:00.808 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:21:01.238 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:21:01.268 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:21:01.268 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 23:21:01.268 -07 000000610 INF: =================== Cycle #75 ===================
17-03-17 23:21:01.768 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 75, FrontChillerTemperature: 4.005817,
17-03-17 23:21:02.058 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 9 R1 9
17-03-17 23:21:02.058 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 74. Bubbles during last 5000 ms interval: R1=9, R2=9, Total=18. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1187, R2=1239, Total=2426. Warn if over 250 bubbles per interval.
17-03-17 23:21:02.488 -07 000000610 INF: AsyncDelayTimer waited 1214ms
17-03-17 23:21:02.488 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-17 23:21:02.488 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:21:02.508 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 23:21:02.508 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-17 23:21:02.508 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-17 23:21:02.648 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 23:21:02.668 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-17 23:21:02.668 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-17 23:21:02.718 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:21:02.738 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 23:21:02.738 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 23:21:02.838 -07 000000610 INF: =================== Cycle #75, Pumping Reagent CMS (4) ===================
17-03-17 23:21:02.838 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 23:21:02.838 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:21:02.868 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 23:21:02.868 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 23:21:02.868 -07 000000610 INF: =================== Cycle #75, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-17 23:21:02.998 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 23:21:03.038 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:21:04.478 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:21:04.508 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:21:04.928 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:21:04.958 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:21:04.958 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 23:21:04.958 -07 000000610 INF: =================== Cycle #75, Pumping Reagent CMS (4) ===================
17-03-17 23:21:05.088 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:21:05.118 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 23:21:05.118 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 23:21:05.248 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:21:05.278 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 23:21:05.278 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 23:21:05.278 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 23:21:05.408 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 23:21:05.438 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:21:05.868 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:21:05.898 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:21:05.898 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 23:21:05.898 -07 000000610 INF: =================== Cycle #75 ===================
17-03-17 23:21:07.058 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 4 R1 4
17-03-17 23:21:07.058 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 74. Bubbles during last 5000 ms interval: R1=4, R2=4, Total=8. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1191, R2=1243, Total=2434. Warn if over 250 bubbles per interval.
17-03-17 23:21:07.118 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-17 23:21:07.118 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 23:21:07.118 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:21:07.138 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 23:21:07.138 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-17 23:21:07.138 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-17 23:21:07.148 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 75, FrontChillerTemperature: 4.018051,
17-03-17 23:21:07.288 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 23:21:07.308 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-17 23:21:07.308 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-17 23:21:07.358 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:21:07.378 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 23:21:07.378 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 23:21:07.478 -07 000000610 INF: =================== Cycle #75, Pumping Reagent PR2 (3) ===================
17-03-17 23:21:07.478 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 23:21:07.478 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:21:07.508 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 23:21:07.508 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 23:21:07.508 -07 000000610 INF: =================== Cycle #75, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 23:21:07.638 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 23:21:07.678 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:21:08.548 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:21:08.578 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:21:08.578 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 23:21:08.578 -07 000000610 INF: =================== Cycle #75, Pumping Reagent PR2 (3) ===================
17-03-17 23:21:08.708 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:21:08.738 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 23:21:08.738 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 23:21:08.868 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:21:08.898 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 23:21:08.898 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 23:21:08.898 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 23:21:09.028 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 23:21:09.058 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:21:09.488 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:21:09.518 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:21:09.518 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 23:21:09.518 -07 000000610 INF: =================== Cycle #75 ===================
17-03-17 23:21:09.518 -07 000000429 INF: WaitCommand(10000) start
17-03-17 23:21:09.518 -07 000000501 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 23:21:09.518 -07 000000501 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 23:21:10.738 -07 000000501 INF: AsyncDelayTimer waited 1216ms
17-03-17 23:21:10.738 -07 000000501 INF: LanePump: Xmit /1?\r
17-03-17 23:21:10.768 -07 000000501 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 23:21:10.768 -07 000000501 INF: LanePump: Current Position of Pump is: 1110
17-03-17 23:21:10.898 -07 000000501 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 23:21:10.938 -07 000000501 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:21:12.058 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 23:21:12.058 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 74. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1191, R2=1244, Total=2435. Warn if over 250 bubbles per interval.
17-03-17 23:21:12.468 -07 000000501 INF: LanePump: Xmit /1Q\r
17-03-17 23:21:12.498 -07 000000501 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:21:12.518 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 75, FrontChillerTemperature: 4.008536,
17-03-17 23:21:12.918 -07 000000501 INF: LanePump: Xmit /1Q\r
17-03-17 23:21:12.948 -07 000000501 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:21:12.948 -07 000000501 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 23:21:12.948 -07 000000501 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 23:21:12.948 -07 000000501 INF: ===================  ===================
17-03-17 23:21:17.058 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:21:17.058 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 74. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1191, R2=1244, Total=2435. Warn if over 250 bubbles per interval.
17-03-17 23:21:17.878 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 75, FrontChillerTemperature: 3.997626,
17-03-17 23:21:19.528 -07 000000429 INF: WaitCommand(10000) end
17-03-17 23:21:19.528 -07 000000610 INF: =================== Cycle #75, Pumping Reagent PR2 (3) ===================
17-03-17 23:21:19.528 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-17 23:21:19.528 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:21:19.568 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 23:21:19.568 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 23:21:19.568 -07 000000610 INF: =================== Cycle #75, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 23:21:19.698 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-17 23:21:19.738 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:21:22.058 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:21:22.058 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 74. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1191, R2=1244, Total=2435. Warn if over 250 bubbles per interval.
17-03-17 23:21:23.248 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 75, FrontChillerTemperature: 3.986717,
17-03-17 23:21:25.868 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:21:25.898 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:21:26.318 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:21:26.348 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:21:26.768 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:21:26.798 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:21:27.058 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:21:27.058 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 74. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1191, R2=1244, Total=2435. Warn if over 250 bubbles per interval.
17-03-17 23:21:27.218 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:21:27.248 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:21:27.668 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:21:27.698 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:21:27.698 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-17 23:21:27.698 -07 000000610 INF: =================== Cycle #75, Pumping Reagent PR2 (3) ===================
17-03-17 23:21:27.828 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:21:27.858 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 23:21:27.858 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 23:21:27.988 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:21:28.018 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 23:21:28.018 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 23:21:28.018 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 23:21:28.148 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 23:21:28.178 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:21:28.608 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:21:28.618 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 75, FrontChillerTemperature: 3.986717,
17-03-17 23:21:28.638 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:21:28.638 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 23:21:28.638 -07 000000610 INF: =================== Cycle #75 ===================
17-03-17 23:21:29.858 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 23:21:29.858 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-17 23:21:29.858 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:21:29.878 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 23:21:29.878 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-17 23:21:29.878 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-17 23:21:30.088 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 23:21:30.108 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-17 23:21:30.108 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-17 23:21:30.158 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:21:30.178 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 23:21:30.178 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 23:21:30.278 -07 000000610 INF: =================== Cycle #75, Pumping Reagent IMT (1) ===================
17-03-17 23:21:30.278 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 23:21:30.278 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:21:30.308 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 23:21:30.308 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 23:21:30.308 -07 000000610 INF: =================== Cycle #75, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-17 23:21:30.438 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 23:21:30.478 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:21:31.918 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:21:31.948 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:21:32.058 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:21:32.058 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 74. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1191, R2=1244, Total=2435. Warn if over 250 bubbles per interval.
17-03-17 23:21:32.368 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:21:32.398 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:21:32.398 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 23:21:32.398 -07 000000610 INF: =================== Cycle #75, Pumping Reagent IMT (1) ===================
17-03-17 23:21:32.528 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:21:32.558 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 23:21:32.558 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 23:21:32.688 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:21:32.718 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 23:21:32.718 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 23:21:32.718 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 23:21:32.848 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 23:21:32.878 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:21:33.308 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:21:33.338 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:21:33.338 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 23:21:33.338 -07 000000610 INF: =================== Cycle #75 ===================
17-03-17 23:21:33.988 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 75, FrontChillerTemperature: 4.008536,
17-03-17 23:21:34.558 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 23:21:34.558 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 23:21:34.558 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:21:34.578 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 23:21:34.578 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-17 23:21:34.578 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 23:21:34.808 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 23:21:34.828 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-17 23:21:34.828 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-17 23:21:34.878 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:21:34.898 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 23:21:34.898 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 23:21:34.998 -07 000000610 INF: =================== Cycle #75, Pumping Reagent PR2 (3) ===================
17-03-17 23:21:34.998 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 23:21:34.998 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:21:35.028 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 23:21:35.028 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 23:21:35.028 -07 000000610 INF: =================== Cycle #75, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 23:21:35.158 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 23:21:35.198 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:21:36.068 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:21:36.098 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:21:36.098 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 23:21:36.098 -07 000000610 INF: =================== Cycle #75, Pumping Reagent PR2 (3) ===================
17-03-17 23:21:36.228 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:21:36.258 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 23:21:36.258 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 23:21:36.388 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:21:36.418 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 23:21:36.418 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 23:21:36.418 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 23:21:36.548 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 23:21:36.578 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:21:37.008 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:21:37.038 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:21:37.038 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 23:21:37.038 -07 000000610 INF: =================== Cycle #75 ===================
17-03-17 23:21:37.038 -07 000000610 INF: =================== Cycle #75, Flow Cell Temp 65° ===================
17-03-17 23:21:37.038 -07 000000610 INF: =================== Cycle #75, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-17 23:21:37.038 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-17 23:21:37.038 -07 000000486 INF: FPGA: Recv TEC2TEMP 
17-03-17 23:21:37.048 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:21:37.048 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 23:21:37.048 -07 000000501 INF: FPGA: Recv TEC2EN 
17-03-17 23:21:37.058 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:21:37.058 -07 000000610 INF: =================== Cycle #75, Flow Cell Temp 65° ===================
17-03-17 23:21:37.058 -07 000000610 INF: =================== Cycle #75 ===================
17-03-17 23:21:37.058 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 1
17-03-17 23:21:37.058 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 74. Bubbles during last 5000 ms interval: R1=1, R2=0, Total=1. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1192, R2=1244, Total=2436. Warn if over 250 bubbles per interval.
17-03-17 23:21:37.058 -07 000000610 INF: WaitCommand(30000) start
17-03-17 23:21:39.368 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 75, FrontChillerTemperature: 4.011254,
17-03-17 23:21:42.058 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:21:42.058 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 74. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1192, R2=1244, Total=2436. Warn if over 250 bubbles per interval.
17-03-17 23:21:44.728 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 75, FrontChillerTemperature: 3.986717,
17-03-17 23:21:47.058 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:21:47.058 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 74. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1192, R2=1244, Total=2436. Warn if over 250 bubbles per interval.
17-03-17 23:21:50.108 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 75, FrontChillerTemperature: 4.012614,
17-03-17 23:21:52.058 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:21:52.058 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 74. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1192, R2=1244, Total=2436. Warn if over 250 bubbles per interval.
17-03-17 23:21:55.478 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 75, FrontChillerTemperature: 4.042558,
17-03-17 23:21:57.058 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:21:57.058 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 74. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1192, R2=1244, Total=2436. Warn if over 250 bubbles per interval.
17-03-17 23:22:00.838 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 75, FrontChillerTemperature: 4.05619,
17-03-17 23:22:02.058 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:22:02.058 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 74. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1192, R2=1244, Total=2436. Warn if over 250 bubbles per interval.
17-03-17 23:22:06.208 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 75, FrontChillerTemperature: 4.024884,
17-03-17 23:22:07.058 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:22:07.058 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 74. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1192, R2=1244, Total=2436. Warn if over 250 bubbles per interval.
17-03-17 23:22:07.068 -07 000000610 INF: WaitCommand(30000) end
17-03-17 23:22:07.068 -07 000000610 INF: =================== Cycle #75, Pumping Reagent PR2 (3) ===================
17-03-17 23:22:07.068 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-17 23:22:07.168 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:22:07.198 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 23:22:07.198 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 23:22:07.198 -07 000000610 INF: =================== Cycle #75, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 23:22:07.328 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-17 23:22:07.368 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:22:07.908 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:22:07.938 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:22:07.938 -07 000000610 INF: LanePump: Waited 570 ms for pump motion to complete
17-03-17 23:22:07.938 -07 000000610 INF: =================== Cycle #75, Pumping Reagent PR2 (3) ===================
17-03-17 23:22:08.068 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:22:08.098 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 23:22:08.098 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 23:22:08.228 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:22:08.258 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 23:22:08.258 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 23:22:08.258 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 23:22:08.388 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 23:22:08.418 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:22:08.848 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:22:08.878 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:22:08.878 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 23:22:08.878 -07 000000610 INF: =================== Cycle #75 ===================
17-03-17 23:22:08.878 -07 000000501 INF: WaitCommand(30000) start
17-03-17 23:22:08.878 -07 000000433 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 23:22:08.878 -07 000000433 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 23:22:10.098 -07 000000433 INF: AsyncDelayTimer waited 1215ms
17-03-17 23:22:10.098 -07 000000433 INF: LanePump: Xmit /1?\r
17-03-17 23:22:10.128 -07 000000433 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 23:22:10.128 -07 000000433 INF: LanePump: Current Position of Pump is: 1920
17-03-17 23:22:10.258 -07 000000433 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 23:22:10.298 -07 000000433 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:22:11.578 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 75, FrontChillerTemperature: 4.030322,
17-03-17 23:22:12.058 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 23:22:12.058 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 74. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1192, R2=1245, Total=2437. Warn if over 250 bubbles per interval.
17-03-17 23:22:12.638 -07 000000433 INF: LanePump: Xmit /1Q\r
17-03-17 23:22:12.668 -07 000000433 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:22:13.088 -07 000000433 INF: LanePump: Xmit /1Q\r
17-03-17 23:22:13.118 -07 000000433 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:22:13.118 -07 000000433 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-17 23:22:13.118 -07 000000433 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 23:22:13.118 -07 000000433 INF: ===================  ===================
17-03-17 23:22:16.948 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 75, FrontChillerTemperature: 3.999021,
17-03-17 23:22:17.058 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:22:17.058 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 74. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1192, R2=1245, Total=2437. Warn if over 250 bubbles per interval.
17-03-17 23:22:22.058 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:22:22.058 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 74. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1192, R2=1245, Total=2437. Warn if over 250 bubbles per interval.
17-03-17 23:22:22.318 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 75, FrontChillerTemperature: 3.963579,
17-03-17 23:22:27.058 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:22:27.058 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 74. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1192, R2=1245, Total=2437. Warn if over 250 bubbles per interval.
17-03-17 23:22:27.688 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 75, FrontChillerTemperature: 3.974486,
17-03-17 23:22:32.058 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:22:32.058 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 74. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1192, R2=1245, Total=2437. Warn if over 250 bubbles per interval.
17-03-17 23:22:33.058 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 75, FrontChillerTemperature: 4.007176,
17-03-17 23:22:37.058 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:22:37.058 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 74. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1192, R2=1245, Total=2437. Warn if over 250 bubbles per interval.
17-03-17 23:22:38.428 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 75, FrontChillerTemperature: 4.026244,
17-03-17 23:22:38.888 -07 000000501 INF: WaitCommand(30000) end
17-03-17 23:22:38.888 -07 000000610 INF: =================== Cycle #75, Flow Cell Temp 22° ===================
17-03-17 23:22:38.888 -07 000000610 INF: =================== Cycle #75, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-17 23:22:38.888 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-17 23:22:38.898 -07 000000593 INF: FPGA: Recv TEC2TEMP 
17-03-17 23:22:38.898 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:22:38.898 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 23:22:38.898 -07 000000480 INF: FPGA: Recv TEC2EN 
17-03-17 23:22:38.908 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:22:38.908 -07 000000610 INF: =================== Cycle #75, Flow Cell Temp 22° ===================
17-03-17 23:22:38.908 -07 000000610 INF: =================== Cycle #75 ===================
17-03-17 23:22:38.908 -07 000000610 INF: =================== Cycle #75, Pumping Reagent PR2 (3) ===================
17-03-17 23:22:38.908 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 23:22:38.908 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:22:38.948 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 23:22:38.948 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 23:22:38.948 -07 000000610 INF: =================== Cycle #75, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 23:22:39.078 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 23:22:39.118 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:22:42.058 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 23:22:42.058 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 74. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1192, R2=1246, Total=2438. Warn if over 250 bubbles per interval.
17-03-17 23:22:42.248 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:22:42.278 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:22:42.698 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:22:42.728 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:22:43.148 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:22:43.178 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:22:43.178 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 23:22:43.178 -07 000000610 INF: =================== Cycle #75, Pumping Reagent PR2 (3) ===================
17-03-17 23:22:43.308 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:22:43.338 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 23:22:43.338 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 23:22:43.468 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:22:43.498 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 23:22:43.498 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 23:22:43.498 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 23:22:43.628 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 23:22:43.658 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:22:43.798 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 75, FrontChillerTemperature: 3.989471,
17-03-17 23:22:44.088 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:22:44.118 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:22:44.118 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 23:22:44.118 -07 000000610 INF: =================== Cycle #75 ===================
17-03-17 23:22:45.338 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-17 23:22:45.338 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-17 23:22:45.338 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:22:45.358 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 23:22:45.358 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-17 23:22:45.358 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-17 23:22:45.508 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 23:22:45.528 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 23:22:45.528 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 23:22:45.578 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:22:45.598 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 23:22:45.598 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 23:22:45.698 -07 000000610 INF: =================== Cycle #75, Pumping Reagent USM (2) ===================
17-03-17 23:22:45.698 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 23:22:45.698 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:22:45.728 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 23:22:45.728 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 23:22:45.728 -07 000000610 INF: =================== Cycle #75, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-17 23:22:45.858 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 23:22:45.898 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:22:47.058 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:22:47.058 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 74. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1192, R2=1246, Total=2438. Warn if over 250 bubbles per interval.
17-03-17 23:22:47.338 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:22:47.368 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:22:47.788 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:22:47.818 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:22:47.818 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 23:22:47.818 -07 000000610 INF: =================== Cycle #75, Pumping Reagent USM (2) ===================
17-03-17 23:22:47.948 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:22:47.978 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 23:22:47.978 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 23:22:48.108 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:22:48.138 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 23:22:48.138 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 23:22:48.138 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 23:22:48.268 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 23:22:48.298 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:22:48.728 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:22:48.758 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:22:48.758 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 23:22:48.758 -07 000000610 INF: =================== Cycle #75 ===================
17-03-17 23:22:49.178 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 75, FrontChillerTemperature: 3.986717,
17-03-17 23:22:49.978 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 23:22:49.978 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 23:22:49.978 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:22:49.998 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 23:22:49.998 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-17 23:22:49.998 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 23:22:50.148 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 23:22:50.168 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 23:22:50.168 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 23:22:50.218 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:22:50.238 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 23:22:50.238 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 23:22:50.338 -07 000000610 INF: =================== Cycle #75, Pumping Reagent PR2 (3) ===================
17-03-17 23:22:50.338 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 23:22:50.338 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:22:50.368 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 23:22:50.368 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 23:22:50.368 -07 000000610 INF: =================== Cycle #75, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 23:22:50.498 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 23:22:50.538 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:22:51.408 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:22:51.438 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:22:51.438 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 23:22:51.438 -07 000000610 INF: =================== Cycle #75, Pumping Reagent PR2 (3) ===================
17-03-17 23:22:51.568 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:22:51.598 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 23:22:51.598 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 23:22:51.728 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:22:51.758 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 23:22:51.758 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 23:22:51.758 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 23:22:51.888 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 23:22:51.918 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:22:52.058 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:22:52.058 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 74. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1192, R2=1246, Total=2438. Warn if over 250 bubbles per interval.
17-03-17 23:22:52.348 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:22:52.378 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:22:52.378 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 23:22:52.378 -07 000000610 INF: =================== Cycle #75 ===================
17-03-17 23:22:52.378 -07 000000433 INF: WaitCommand(10000) start
17-03-17 23:22:52.378 -07 000000486 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 23:22:52.378 -07 000000486 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 23:22:53.598 -07 000000486 INF: AsyncDelayTimer waited 1216ms
17-03-17 23:22:53.598 -07 000000486 INF: LanePump: Xmit /1?\r
17-03-17 23:22:53.628 -07 000000486 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 23:22:53.628 -07 000000486 INF: LanePump: Current Position of Pump is: 1110
17-03-17 23:22:53.758 -07 000000486 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 23:22:53.798 -07 000000486 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:22:54.538 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 75, FrontChillerTemperature: 3.985358,
17-03-17 23:22:55.328 -07 000000486 INF: LanePump: Xmit /1Q\r
17-03-17 23:22:55.358 -07 000000486 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:22:55.778 -07 000000486 INF: LanePump: Xmit /1Q\r
17-03-17 23:22:55.808 -07 000000486 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:22:55.808 -07 000000486 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 23:22:55.808 -07 000000486 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 23:22:55.808 -07 000000486 INF: ===================  ===================
17-03-17 23:22:57.058 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:22:57.058 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 74. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1192, R2=1246, Total=2438. Warn if over 250 bubbles per interval.
17-03-17 23:22:59.908 -07 000000593 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 75, FrontChillerTemperature: 3.986717,
17-03-17 23:23:02.058 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:23:02.058 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 74. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1192, R2=1246, Total=2438. Warn if over 250 bubbles per interval.
17-03-17 23:23:02.388 -07 000000433 INF: WaitCommand(10000) end
17-03-17 23:23:02.388 -07 000000610 INF: =================== Cycle #75, Imaging ===================
17-03-17 23:23:02.388 -07 000000610 INF: Imaging Cycle 75: ScanTilesCommand Cycle 75 time start.
17-03-17 23:23:02.388 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-17 23:23:02.388 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:23:02.418 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 23:23:02.418 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-17 23:23:02.418 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-17 23:23:02.718 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 23:23:02.738 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 23:23:02.738 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 23:23:02.788 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:23:02.808 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 23:23:02.808 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:23:02.808 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:23:02.808 -07 000000429 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-17 23:23:02.808 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:23:02.808 -07 000000429 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-17 23:23:02.808 -07 000000475 INF: FPGA: Recv EXLED1ON 
17-03-17 23:23:02.818 -07 000000429 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:23:02.818 -07 000000429 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-17 23:23:02.818 -07 000000576 INF: FPGA: Recv EXLED1ADCR 23165
17-03-17 23:23:02.828 -07 000000429 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:02.828 -07 000000429 INF: RedLED: Using Red data: Photodiode ADC 23165 --> 7.4 mW (old method), or 205.3 mW (new method). Difference = 197.9 mW
17-03-17 23:23:02.828 -07 000000429 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-17 23:23:02.828 -07 000000475 INF: FPGA: Recv EXLED1OFF 
17-03-17 23:23:02.838 -07 000000429 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:02.838 -07 000000429 INF: RedLED: LED was on for 20 ms
17-03-17 23:23:02.838 -07 000000429 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 24 ms.
17-03-17 23:23:02.838 -07 000000429 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-17 23:23:02.838 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:23:02.838 -07 000000429 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-17 23:23:02.838 -07 000000433 INF: FPGA: Recv EXLED2ON 
17-03-17 23:23:02.848 -07 000000429 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:23:02.848 -07 000000429 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 23:23:02.848 -07 000000593 INF: FPGA: Recv EXLED1ADCR 2100
17-03-17 23:23:02.858 -07 000000429 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:02.858 -07 000000429 INF: GreenLED: Using Green data: Photodiode ADC 2100 --> 0.9 mW (old method), or 182.5 mW (new method). Difference = 181.5 mW
17-03-17 23:23:02.858 -07 000000429 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-17 23:23:02.858 -07 000000475 INF: FPGA: Recv EXLED2OFF 
17-03-17 23:23:02.868 -07 000000429 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:02.868 -07 000000429 INF: GreenLED: LED was on for 21 ms
17-03-17 23:23:02.868 -07 000000429 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 29 ms.
17-03-17 23:23:02.868 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 23:23:02.868 -07 000000475 INF: FPGA: Recv EMCUR 
17-03-17 23:23:02.878 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:23:02.878 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-17 23:23:03.378 -07 000000623 INF: FPGA: Recv EMOUT
17-03-17 23:23:03.378 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 23:23:03.378 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-17 23:23:03.378 -07 000000480 INF: FPGA: Recv EMCUR 
17-03-17 23:23:03.388 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:23:03.388 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:23:03.388 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.38427734375, Z-Position -0.126876048395731. ------
17-03-17 23:23:03.388 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:23:03.388 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17924 mm
17-03-17 23:23:03.388 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:23:03.388 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:23:03.388 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 23:23:03.388 -07 000000623 INF: Y Motor: Moving to 59.9126 mm, started at 75.3843 mm, delta = -15.4717 mm
17-03-17 23:23:03.388 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 39155, sync = True, waitForSettling = False)
17-03-17 23:23:03.398 -07 000000576 INF: Z Motor: Moving to -0.179240 mm, started at -0.126876 mm, distance = -52.36 um
17-03-17 23:23:03.398 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:23:03.398 -07 000000576 INF: FPGA: Xmit ZDACW 39155\n [Z Motor]
17-03-17 23:23:03.398 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 23:23:03.408 -07 000000576 INF: FPGA: 'ZDACW 39155' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:03.408 -07 000000486 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:23:03.418 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:23:03.418 -07 000000462 INF: FPGA: Recv YRDPOS 154388
17-03-17 23:23:03.428 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 23:23:03.428 -07 000000623 INF: Y Motor: Encoder = 154388 = motor step 120615.6 = 75.3848 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:23:03.428 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:23:03.428 -07 000000623 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-17 23:23:03.428 -07 000000623 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 23:23:03.428 -07 000000462 INF: FPGA: Recv ZDACR 39155
17-03-17 23:23:03.438 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:23:03.438 -07 000000576 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-17 23:23:03.438 -07 000000623 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 23:23:03.608 -07 000000429 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:23:03.608 -07 000000486 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 215 ms overall
17-03-17 23:23:05.118 -07 000000576 INF: FPGA: Recv YMVTO 122703 24782
17-03-17 23:23:05.118 -07 000000623 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1676 ms to get response, and 1693 ms overall
17-03-17 23:23:05.118 -07 000000623 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 23:23:05.118 -07 000000623 INF: Y Motor: To move from 75.385 to 59.913 (-15.472 mm) should take 24755 steps, but required 24782 steps (15.489 mm). Slippage = 0.017 mm (0.00%).
17-03-17 23:23:05.118 -07 000000623 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1693 ms, distance = 15.472 mm, average velocity = 9.139 mm/sec
17-03-17 23:23:05.288 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 75, FrontChillerTemperature: 3.970374,
17-03-17 23:23:07.058 -07 000000429 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:23:07.058 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 74. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1192, R2=1246, Total=2438. Warn if over 250 bubbles per interval.
17-03-17 23:23:07.968 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:23:07.968 -07 000000429 INF: FPGA: Recv YRDPOS 122698
17-03-17 23:23:07.978 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:23:07.978 -07 000000623 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:23:07.998 -07 000000623 INF: Y Motor: After move to 59.912609, error = -0.001476, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:23:07.998 -07 000000623 INF: Y Motor: Position error after settling = -3 encoder counts (-0.001 mm), Delta during settling = -5 counts (-0.002 mm)
17-03-17 23:23:07.998 -07 000000623 INF: Y Motor: Moved to 59.9111 after 4607 ms
17-03-17 23:23:08.008 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.179240 mm (DAC = 39155)
17-03-17 23:23:08.008 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:08.008 -07 000000462 INF: FPGA: Recv ZSGSRD 37187
17-03-17 23:23:08.018 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:08.018 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:08.018 -07 000000501 INF: FPGA: Recv ZSGSRD 37192
17-03-17 23:23:08.028 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:08.028 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:08.028 -07 000000429 INF: FPGA: Recv ZSGSRD 37187
17-03-17 23:23:08.038 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:08.038 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:08.038 -07 000000478 INF: FPGA: Recv ZSGSRD 37194
17-03-17 23:23:08.048 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:08.048 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:08.048 -07 000000551 INF: FPGA: Recv ZSGSRD 37194
17-03-17 23:23:08.058 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:08.058 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:08.058 -07 000000478 INF: FPGA: Recv ZSGSRD 37187
17-03-17 23:23:08.068 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:08.068 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:08.068 -07 000000486 INF: FPGA: Recv ZSGSRD 37201
17-03-17 23:23:08.078 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:08.078 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:08.078 -07 000000551 INF: FPGA: Recv ZSGSRD 37189
17-03-17 23:23:08.088 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:08.088 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:08.088 -07 000000462 INF: FPGA: Recv ZSGSRD 37191
17-03-17 23:23:08.098 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:08.098 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:08.098 -07 000000475 INF: FPGA: Recv ZSGSRD 37192
17-03-17 23:23:08.108 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:08.108 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:23:08.108 -07 000000429 INF: FPGA: Recv ZPIEZORD 33500
17-03-17 23:23:08.118 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:08.118 -07 000000382 INF: Z Motor: Piezo is near 51.6 V (nominally 0 to 100 V), expect near 59.7 V, since DAC is at 5.975 V. Piezo Error = -8.2 V.
17-03-17 23:23:08.118 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.2 um, Read 10 ADC samples: Avg = 37191 (-178.3 uncal um), Error = 0.9 uncal um, Median = 37192 (-178.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 37187 (-178.3 uncal um), Max = 37201 (-178.4 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:23:08.118 -07 000000382 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37191, posNoise = 10, negNoise = 4
17-03-17 23:23:08.118 -07 000000382 INF: Z Motor: After move to -0.179240, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:23:08.118 -07 000000382 INF: Z Motor: Settle wait time = 4610 ms, measure time = 110 ms (allowed 150 ms), total time = 4720 ms
17-03-17 23:23:08.118 -07 000000382 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 23:23:08.158 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4765 ms
17-03-17 23:23:08.158 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:23:08.158 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:23:08.158 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:23:08.158 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:23:08.158 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:23:08.158 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:23:08.158 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:23:08.168 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:23:08.168 -07 000000478 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 23:23:08.188 -07 000000478 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms.
17-03-17 23:23:08.188 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:23:08.188 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 23:23:08.188 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:23:08.208 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 23:23:08.208 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 42 ms.
17-03-17 23:23:08.208 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:23:08.248 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:23:08.448 -07 000000551 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:23:08.448 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:23:08.448 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:23:08.458 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 659142808, 0x0, 559484976) start.
17-03-17 23:23:08.488 -07 000000433 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:23:08.488 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 23:23:08.488 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 23:23:08.578 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 659142808, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 23:23:08.578 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:23:08.588 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 23:23:08.588 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 131 ms.
17-03-17 23:23:08.688 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:23:08.688 -07 000000501 INF: Image SNR check: start
17-03-17 23:23:08.688 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:23:08.698 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:23:08.698 -07 000000429 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:23:08.698 -07 000000501 INF: Image SNR check: pass  [peak (Max-Min)=59.40]
17-03-17 23:23:08.698 -07 000000501 INF: Autofocus start
17-03-17 23:23:08.698 -07 000000501 INF: MeasureProfile start
17-03-17 23:23:08.708 -07 000000501 INF: MeasureProfile done
17-03-17 23:23:08.708 -07 000000501 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 23:23:08.708 -07 000000501 INF: Autofocus finished
17-03-17 23:23:08.898 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:23:08.898 -07 000000429 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:23:08.898 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.9111328125, Z-position -0.179246225775367. ----------
17-03-17 23:23:08.898 -07 000000610 INF: Cycle	75	Tile	1	Exposure Settings		A	474	G	228	T	228	C	474
17-03-17 23:23:08.908 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37635, sync = True, waitForSettling = True)
17-03-17 23:23:08.908 -07 000000610 INF: Z Motor: Moving to -0.172282 mm, started at -0.179246 mm, distance = 6.96 um
17-03-17 23:23:08.908 -07 000000610 INF: FPGA: Xmit ZDACW 37635\n [Z Motor]
17-03-17 23:23:08.908 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 23:23:08.918 -07 000000610 INF: FPGA: 'ZDACW 37635' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:08.918 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:23:08.918 -07 000000593 INF: FPGA: Recv ZDACR 37635
17-03-17 23:23:08.928 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:08.928 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:23:09.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:09.078 -07 000000576 INF: FPGA: Recv ZSGSRD 36108
17-03-17 23:23:09.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:23:09.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:09.088 -07 000000623 INF: FPGA: Recv ZSGSRD 36114
17-03-17 23:23:09.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:09.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:09.098 -07 000000475 INF: FPGA: Recv ZSGSRD 36106
17-03-17 23:23:09.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:09.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:09.108 -07 000000502 INF: FPGA: Recv ZSGSRD 36109
17-03-17 23:23:09.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:09.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:09.118 -07 000000501 INF: FPGA: Recv ZSGSRD 36108
17-03-17 23:23:09.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:09.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:09.128 -07 000000462 INF: FPGA: Recv ZSGSRD 36106
17-03-17 23:23:09.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:09.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:09.138 -07 000000480 INF: FPGA: Recv ZSGSRD 36111
17-03-17 23:23:09.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:09.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:09.148 -07 000000462 INF: FPGA: Recv ZSGSRD 36109
17-03-17 23:23:09.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:23:09.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:09.158 -07 000000576 INF: FPGA: Recv ZSGSRD 36113
17-03-17 23:23:09.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:23:09.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:09.168 -07 000000433 INF: FPGA: Recv ZSGSRD 36109
17-03-17 23:23:09.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:09.178 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:23:09.178 -07 000000623 INF: FPGA: Recv ZPIEZORD 32070
17-03-17 23:23:09.188 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:09.188 -07 000000610 INF: Z Motor: Piezo is near 48.5 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.743 V. Piezo Error = -8.9 V.
17-03-17 23:23:09.188 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.3 um, Read 10 ADC samples: Avg = 36109 (-171.4 uncal um), Error = 0.9 uncal um, Median = 36109 (-171.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36106 (-171.4 uncal um), Max = 36114 (-171.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 23:23:09.188 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36109, posNoise = 5, negNoise = 3
17-03-17 23:23:09.188 -07 000000610 INF: Z Motor: After move to -0.172282, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:23:09.188 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 23:23:09.188 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:23:09.188 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:23:09.188 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:23:09.188 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:23:09.188 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:23:09.188 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:23:09.188 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:23:09.188 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:23:09.188 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:23:09.188 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:23:09.188 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:23:09.188 -07 000000480 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 23:23:09.188 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 23:23:09.188 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:23:09.208 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 23:23:09.208 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 23:23:09.208 -07 000000480 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms.
17-03-17 23:23:09.208 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:23:09.218 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:23:09.218 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:23:09.228 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 23:23:09.228 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 40 ms.
17-03-17 23:23:09.228 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 474 474 228 228 37811 150\n [Camera]
17-03-17 23:23:09.438 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:23:09.908 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 666
17-03-17 23:23:09.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 666
17-03-17 23:23:09.908 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:23:09.908 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:23:09.908 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 23:23:09.908 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 666
17-03-17 23:23:09.908 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 666
17-03-17 23:23:09.908 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:23:09.908 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:23:09.908 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 23:23:10.098 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37811 859
17-03-17 23:23:10.248 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1009
17-03-17 23:23:10.308 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 23:23:10.308 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 23:23:10.308 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:23:10.308 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 23:23:10.308 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 23:23:10.308 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:23:10.318 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 23:23:10.318 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 23:23:10.318 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 23:23:10.328 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 23:23:10.478 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1237
17-03-17 23:23:10.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1237
17-03-17 23:23:10.478 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:23:10.478 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:23:10.478 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) start.
17-03-17 23:23:10.478 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1237
17-03-17 23:23:10.478 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1237
17-03-17 23:23:10.478 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:23:10.478 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:23:10.478 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2164362856, 0x0, 418435064) start.
17-03-17 23:23:10.648 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 75, FrontChillerTemperature: 3.960826,
17-03-17 23:23:10.668 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP 1429
17-03-17 23:23:10.668 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:23:10.668 -07 000000610 INF: FPGA: 'CAMDBLSNAP 474 474 228 228 37811 150' command took 2 ms to send, 1426 ms to get response, and 1436 ms overall
17-03-17 23:23:10.668 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:23:10.668 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.9111328125, Z-Position -0.172295228237981. ------
17-03-17 23:23:10.678 -07 000000478 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17826 mm
17-03-17 23:23:10.678 -07 000000478 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:23:10.678 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 23:23:10.678 -07 000000576 INF: Y Motor: Moving to 60.7426 mm, started at 59.9111 mm, delta = 0.8315 mm
17-03-17 23:23:10.678 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 38941, sync = True, waitForSettling = False)
17-03-17 23:23:10.678 -07 000000480 INF: Z Motor: Moving to -0.178260 mm, started at -0.172295 mm, distance = -5.97 um
17-03-17 23:23:10.698 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:23:10.698 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:23:10.708 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:23:10.708 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:23:10.708 -07 000000551 INF: FPGA: Recv YRDPOS 122698
17-03-17 23:23:10.718 -07 000000480 INF: FPGA: Xmit ZDACW 38941\n [Z Motor]
17-03-17 23:23:10.718 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 35 ms overall
17-03-17 23:23:10.718 -07 000000576 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:23:10.718 -07 000000576 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:23:10.718 -07 000000576 INF: Y Motor: Moving 1330 steps2
17-03-17 23:23:10.718 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 23:23:10.728 -07 000000429 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:23:10.728 -07 000000480 INF: FPGA: 'ZDACW 38941' command took 0 ms to send, 0 ms to get response, and 45 ms overall
17-03-17 23:23:10.738 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:23:10.748 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:23:10.748 -07 000000462 INF: FPGA: Recv ZDACR 38941
17-03-17 23:23:10.758 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:23:10.758 -07 000000480 INF: Z Motor: MoveAbsStepped took 75 ms (did NOT wait for settling yet))
17-03-17 23:23:10.878 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 23:23:10.878 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 23:23:10.878 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:23:10.878 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2164362856, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 23:23:10.878 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 23:23:10.878 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:23:10.888 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 23:23:10.888 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 23:23:10.888 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 23:23:10.898 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms.
17-03-17 23:23:10.928 -07 000000551 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:23:10.928 -07 000000429 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 23:23:11.108 -07 000000551 INF: FPGA: Recv YMVTILE
17-03-17 23:23:11.108 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 367 ms to get response, and 397 ms overall
17-03-17 23:23:11.148 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:23:11.148 -07 000000486 INF: FPGA: Recv YRDPOS 124381
17-03-17 23:23:11.158 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:23:11.158 -07 000000576 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:23:11.158 -07 000000576 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 23:23:11.158 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.831 mm, average velocity = 2.094 mm/sec
17-03-17 23:23:12.058 -07 000000551 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:23:12.058 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 74. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1192, R2=1246, Total=2438. Warn if over 250 bubbles per interval.
17-03-17 23:23:12.108 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:23:12.108 -07 000000480 INF: FPGA: Recv YRDPOS 124381
17-03-17 23:23:12.118 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:12.118 -07 000000576 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:23:12.138 -07 000000576 INF: Y Motor: After move to 60.742607, error = -0.009697, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:23:12.138 -07 000000576 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:23:12.138 -07 000000576 INF: Y Motor: Moved to 60.7329 after 1463 ms (table move)
17-03-17 23:23:12.148 -07 000000478 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178260 mm (DAC = 38941)
17-03-17 23:23:12.148 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:12.148 -07 000000623 INF: FPGA: Recv ZSGSRD 37038
17-03-17 23:23:12.158 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:12.158 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:12.158 -07 000000576 INF: FPGA: Recv ZSGSRD 37042
17-03-17 23:23:12.168 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:12.168 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:12.168 -07 000000551 INF: FPGA: Recv ZSGSRD 37038
17-03-17 23:23:12.178 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:12.178 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:12.178 -07 000000462 INF: FPGA: Recv ZSGSRD 37039
17-03-17 23:23:12.188 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:12.188 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:12.188 -07 000000623 INF: FPGA: Recv ZSGSRD 37044
17-03-17 23:23:12.198 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:12.198 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:12.198 -07 000000429 INF: FPGA: Recv ZSGSRD 37038
17-03-17 23:23:12.208 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:12.208 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:12.208 -07 000000551 INF: FPGA: Recv ZSGSRD 37041
17-03-17 23:23:12.218 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:12.218 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:12.218 -07 000000623 INF: FPGA: Recv ZSGSRD 37034
17-03-17 23:23:12.228 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:12.228 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:12.228 -07 000000433 INF: FPGA: Recv ZSGSRD 37036
17-03-17 23:23:12.238 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:12.238 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:12.238 -07 000000623 INF: FPGA: Recv ZSGSRD 37038
17-03-17 23:23:12.248 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:12.248 -07 000000478 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:23:12.248 -07 000000593 INF: FPGA: Recv ZPIEZORD 33333
17-03-17 23:23:12.258 -07 000000478 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:12.258 -07 000000478 INF: Z Motor: Piezo is near 51.2 V (nominally 0 to 100 V), expect near 59.4 V, since DAC is at 5.942 V. Piezo Error = -8.2 V.
17-03-17 23:23:12.258 -07 000000478 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.3 um, Read 10 ADC samples: Avg = 37039 (-177.4 uncal um), Error = 0.9 uncal um, Median = 37038 (-177.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 37034 (-177.3 uncal um), Max = 37044 (-177.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:23:12.258 -07 000000478 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37039, posNoise = 5, negNoise = 5
17-03-17 23:23:12.258 -07 000000478 INF: Z Motor: After move to -0.178260, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:23:12.258 -07 000000478 INF: Z Motor: Settle wait time = 1465 ms, measure time = 111 ms (allowed 150 ms), total time = 1576 ms
17-03-17 23:23:12.258 -07 000000478 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 23:23:12.298 -07 000000478 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1619 ms
17-03-17 23:23:12.298 -07 000000478 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:23:12.298 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:23:12.298 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:23:12.298 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:23:12.298 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:23:12.298 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:23:12.298 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:23:12.298 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:23:12.298 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:23:12.308 -07 000000593 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:23:12.308 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:23:12.318 -07 000000593 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 23:23:12.318 -07 000000593 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 23:23:12.318 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:23:12.368 -07 000000551 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:23:12.568 -07 000000486 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:23:12.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:23:12.568 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:23:12.568 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) start.
17-03-17 23:23:12.608 -07 000000502 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:23:12.608 -07 000000623 INF: FPGA: Recv CAMSNAP
17-03-17 23:23:12.608 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 23:23:12.698 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 23:23:12.698 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:23:12.698 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 23:23:12.698 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 23:23:12.708 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:23:12.708 -07 000000501 INF: Autofocus start
17-03-17 23:23:12.708 -07 000000501 INF: MeasureProfile start
17-03-17 23:23:12.708 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:23:12.718 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:23:12.718 -07 000000486 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:23:12.718 -07 000000501 INF: MeasureProfile done
17-03-17 23:23:12.718 -07 000000501 INF: X=0  Z correction [um]=-0.0713522
17-03-17 23:23:12.718 -07 000000501 INF: Autofocus finished
17-03-17 23:23:12.918 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:23:12.918 -07 000000486 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 202 ms overall
17-03-17 23:23:12.918 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73291015625, Z-position -0.178269745529819. ----------
17-03-17 23:23:12.918 -07 000000610 INF: Cycle	75	Tile	2	Exposure Settings		A	474	G	228	T	228	C	474
17-03-17 23:23:12.928 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37438, sync = True, waitForSettling = True)
17-03-17 23:23:12.928 -07 000000610 INF: Z Motor: Moving to -0.171380 mm, started at -0.178270 mm, distance = 6.89 um
17-03-17 23:23:12.928 -07 000000610 INF: FPGA: Xmit ZDACW 37438\n [Z Motor]
17-03-17 23:23:12.928 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 23:23:12.938 -07 000000610 INF: FPGA: 'ZDACW 37438' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:12.938 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:23:12.938 -07 000000576 INF: FPGA: Recv ZDACR 37438
17-03-17 23:23:12.948 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:12.948 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:23:13.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:13.098 -07 000000486 INF: FPGA: Recv ZSGSRD 35970
17-03-17 23:23:13.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:23:13.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:13.108 -07 000000433 INF: FPGA: Recv ZSGSRD 35966
17-03-17 23:23:13.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:13.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:13.118 -07 000000502 INF: FPGA: Recv ZSGSRD 35974
17-03-17 23:23:13.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:13.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:13.128 -07 000000623 INF: FPGA: Recv ZSGSRD 35969
17-03-17 23:23:13.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:13.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:13.138 -07 000000462 INF: FPGA: Recv ZSGSRD 35972
17-03-17 23:23:13.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:13.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:13.148 -07 000000433 INF: FPGA: Recv ZSGSRD 35966
17-03-17 23:23:13.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:13.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:13.158 -07 000000502 INF: FPGA: Recv ZSGSRD 35967
17-03-17 23:23:13.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:13.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:13.168 -07 000000475 INF: FPGA: Recv ZSGSRD 35973
17-03-17 23:23:13.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:13.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:13.178 -07 000000462 INF: FPGA: Recv ZSGSRD 35964
17-03-17 23:23:13.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:13.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:13.188 -07 000000502 INF: FPGA: Recv ZSGSRD 35969
17-03-17 23:23:13.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:13.198 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:23:13.198 -07 000000480 INF: FPGA: Recv ZPIEZORD 31865
17-03-17 23:23:13.208 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:13.208 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.713 V. Piezo Error = -9.1 V.
17-03-17 23:23:13.208 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.4 um, Read 10 ADC samples: Avg = 35969 (-170.5 uncal um), Error = 0.9 uncal um, Median = 35969 (-170.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35964 (-170.5 uncal um), Max = 35974 (-170.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:23:13.208 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35969, posNoise = 5, negNoise = 5
17-03-17 23:23:13.208 -07 000000610 INF: Z Motor: After move to -0.171380, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:23:13.208 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 23:23:13.208 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:23:13.208 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:23:13.208 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:23:13.208 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:23:13.208 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:23:13.208 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:23:13.208 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:23:13.208 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:23:13.208 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:23:13.208 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:23:13.208 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:23:13.208 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:23:13.208 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:23:13.218 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:23:13.218 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:23:13.218 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:23:13.228 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-17 23:23:13.228 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 23:23:13.228 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 23:23:13.228 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 23:23:13.228 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 474 474 228 228 37615 150\n [Camera]
17-03-17 23:23:13.428 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:23:13.908 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 666
17-03-17 23:23:13.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 666
17-03-17 23:23:13.908 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:23:13.908 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:23:13.908 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2216660184, 0x0, 391868352) start.
17-03-17 23:23:13.908 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 666
17-03-17 23:23:13.908 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 666
17-03-17 23:23:13.908 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:23:13.908 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:23:13.908 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 23:23:14.098 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37615 859
17-03-17 23:23:14.248 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1009
17-03-17 23:23:14.308 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2216660184, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 23:23:14.308 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 23:23:14.308 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:23:14.308 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 23:23:14.308 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:23:14.308 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 23:23:14.308 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 23:23:14.308 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:23:14.318 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:23:14.318 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 23:23:14.478 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1237
17-03-17 23:23:14.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1237
17-03-17 23:23:14.478 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:23:14.478 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:23:14.478 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 23:23:14.478 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1237
17-03-17 23:23:14.478 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1237
17-03-17 23:23:14.478 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:23:14.478 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:23:14.478 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 23:23:14.668 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP 1430
17-03-17 23:23:14.668 -07 000000433 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:23:14.668 -07 000000610 INF: FPGA: 'CAMDBLSNAP 474 474 228 228 37615 150' command took 2 ms to send, 1425 ms to get response, and 1437 ms overall
17-03-17 23:23:14.668 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:23:14.668 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73291015625, Z-Position -0.171395838538135. ------
17-03-17 23:23:14.678 -07 000000486 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17806 mm
17-03-17 23:23:14.678 -07 000000486 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:23:14.678 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:23:14.678 -07 000000433 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 23:23:14.678 -07 000000433 INF: Y Motor: Moving to 61.5726 mm, started at 60.7329 mm, delta = 0.8397 mm
17-03-17 23:23:14.678 -07 000000593 INF: Z Motor: Entering MoveAbsStepped (DAC = 38897, sync = True, waitForSettling = False)
17-03-17 23:23:14.678 -07 000000593 INF: Z Motor: Moving to -0.178059 mm, started at -0.171396 mm, distance = -6.66 um
17-03-17 23:23:14.678 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:23:14.688 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:23:14.688 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:23:14.688 -07 000000478 INF: FPGA: Recv YRDPOS 124382
17-03-17 23:23:14.698 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 23:23:14.698 -07 000000433 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:23:14.698 -07 000000593 INF: FPGA: Xmit ZDACW 38897\n [Z Motor]
17-03-17 23:23:14.698 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 23:23:14.698 -07 000000433 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:23:14.698 -07 000000433 INF: Y Motor: Moving 1343 steps-20
17-03-17 23:23:14.708 -07 000000623 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:23:14.708 -07 000000593 INF: FPGA: 'ZDACW 38897' command took 1 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 23:23:14.718 -07 000000433 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:23:14.728 -07 000000593 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:23:14.728 -07 000000551 INF: FPGA: Recv ZDACR 38897
17-03-17 23:23:14.738 -07 000000593 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:23:14.738 -07 000000593 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet))
17-03-17 23:23:14.868 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 23:23:14.868 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 23:23:14.868 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:23:14.868 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:23:14.878 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 23:23:14.878 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 23:23:14.878 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:23:14.878 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 23:23:14.878 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 23:23:14.878 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 23:23:14.908 -07 000000475 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:23:14.908 -07 000000623 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 23:23:15.088 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-17 23:23:15.088 -07 000000433 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-17 23:23:15.138 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:23:15.138 -07 000000382 INF: FPGA: Recv YRDPOS 126083
17-03-17 23:23:15.148 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:23:15.148 -07 000000433 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:23:15.148 -07 000000433 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 23:23:15.148 -07 000000433 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.840 mm, average velocity = 2.148 mm/sec
17-03-17 23:23:16.018 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 75, FrontChillerTemperature: 3.997626,
17-03-17 23:23:16.098 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:23:16.098 -07 000000593 INF: FPGA: Recv YRDPOS 126083
17-03-17 23:23:16.108 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:23:16.108 -07 000000433 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:23:16.128 -07 000000433 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:23:16.128 -07 000000433 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:23:16.128 -07 000000433 INF: Y Motor: Moved to 61.5640 after 1451 ms (table move)
17-03-17 23:23:16.138 -07 000000486 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178059 mm (DAC = 38897)
17-03-17 23:23:16.138 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:16.138 -07 000000502 INF: FPGA: Recv ZSGSRD 37006
17-03-17 23:23:16.148 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:16.148 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:16.148 -07 000000475 INF: FPGA: Recv ZSGSRD 37007
17-03-17 23:23:16.158 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:16.158 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:16.158 -07 000000382 INF: FPGA: Recv ZSGSRD 37012
17-03-17 23:23:16.168 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:16.168 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:16.168 -07 000000475 INF: FPGA: Recv ZSGSRD 37014
17-03-17 23:23:16.178 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:16.178 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:16.178 -07 000000501 INF: FPGA: Recv ZSGSRD 37015
17-03-17 23:23:16.188 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:16.188 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:16.188 -07 000000478 INF: FPGA: Recv ZSGSRD 37007
17-03-17 23:23:16.198 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:16.198 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:16.198 -07 000000433 INF: FPGA: Recv ZSGSRD 37013
17-03-17 23:23:16.208 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:16.208 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:16.208 -07 000000623 INF: FPGA: Recv ZSGSRD 37002
17-03-17 23:23:16.218 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:16.218 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:16.218 -07 000000593 INF: FPGA: Recv ZSGSRD 36994
17-03-17 23:23:16.228 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:16.228 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:16.228 -07 000000462 INF: FPGA: Recv ZSGSRD 37012
17-03-17 23:23:16.238 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:16.238 -07 000000486 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:23:16.238 -07 000000551 INF: FPGA: Recv ZPIEZORD 33265
17-03-17 23:23:16.248 -07 000000486 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:16.248 -07 000000486 INF: Z Motor: Piezo is near 51.1 V (nominally 0 to 100 V), expect near 59.4 V, since DAC is at 5.935 V. Piezo Error = -8.3 V.
17-03-17 23:23:16.248 -07 000000486 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.1 um, Read 10 ADC samples: Avg = 37008 (-177.2 uncal um), Error = 0.9 uncal um, Median = 37010 (-177.2 uncal um), StdDev = 6 (0.0 uncal um), Range = 21 (0.1 uncal um), Min = 36994 (-177.1 uncal um), Max = 37015 (-177.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 14 (0.1 uncal um)
17-03-17 23:23:16.248 -07 000000486 INF: Z Motor: ADC noise = 14, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37008, posNoise = 7, negNoise = 14
17-03-17 23:23:16.248 -07 000000486 INF: Z Motor: After move to -0.178059, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:23:16.248 -07 000000486 INF: Z Motor: Settle wait time = 1454 ms, measure time = 110 ms (allowed 150 ms), total time = 1564 ms
17-03-17 23:23:16.248 -07 000000486 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 23:23:16.288 -07 000000486 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1606 ms
17-03-17 23:23:16.288 -07 000000486 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:23:16.288 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:23:16.288 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:23:16.288 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:23:16.288 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:23:16.288 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:23:16.288 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:23:16.288 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 23:23:16.288 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:23:16.298 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:23:16.298 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:23:16.298 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 23:23:16.298 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 23:23:16.308 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:23:16.348 -07 000000429 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:23:16.548 -07 000000623 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:23:16.548 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:23:16.548 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:23:16.548 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2268957512, 0x0, 559484976) start.
17-03-17 23:23:16.588 -07 000000382 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:23:16.588 -07 000000433 INF: FPGA: Recv CAMSNAP
17-03-17 23:23:16.588 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 285 ms overall
17-03-17 23:23:16.668 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2268957512, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 23:23:16.668 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:23:16.668 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 23:23:16.668 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 23:23:16.688 -07 000000502 INF: Autofocus start
17-03-17 23:23:16.688 -07 000000502 INF: MeasureProfile start
17-03-17 23:23:16.688 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:23:16.688 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:23:16.698 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:23:16.698 -07 000000623 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:23:16.698 -07 000000502 INF: MeasureProfile done
17-03-17 23:23:16.698 -07 000000502 INF: X=16  Z correction [um]=0.01042744
17-03-17 23:23:16.698 -07 000000502 INF: Autofocus finished
17-03-17 23:23:16.898 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:23:16.898 -07 000000623 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:23:16.898 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.178070594953424. ----------
17-03-17 23:23:16.898 -07 000000610 INF: Cycle	75	Tile	3	Exposure Settings		A	474	G	228	T	228	C	474
17-03-17 23:23:16.908 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37412, sync = True, waitForSettling = True)
17-03-17 23:23:16.908 -07 000000610 INF: Z Motor: Moving to -0.171261 mm, started at -0.178071 mm, distance = 6.81 um
17-03-17 23:23:16.908 -07 000000610 INF: FPGA: Xmit ZDACW 37412\n [Z Motor]
17-03-17 23:23:16.908 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 23:23:16.918 -07 000000610 INF: FPGA: 'ZDACW 37412' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:23:16.918 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:23:16.918 -07 000000475 INF: FPGA: Recv ZDACR 37412
17-03-17 23:23:16.928 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:16.928 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:23:17.058 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:23:17.058 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 74. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1192, R2=1246, Total=2438. Warn if over 250 bubbles per interval.
17-03-17 23:23:17.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:17.078 -07 000000551 INF: FPGA: Recv ZSGSRD 35950
17-03-17 23:23:17.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:17.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:17.088 -07 000000433 INF: FPGA: Recv ZSGSRD 35954
17-03-17 23:23:17.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:17.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:17.098 -07 000000501 INF: FPGA: Recv ZSGSRD 35947
17-03-17 23:23:17.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:17.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:17.108 -07 000000576 INF: FPGA: Recv ZSGSRD 35946
17-03-17 23:23:17.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:17.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:17.118 -07 000000551 INF: FPGA: Recv ZSGSRD 35948
17-03-17 23:23:17.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:17.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:17.128 -07 000000478 INF: FPGA: Recv ZSGSRD 35956
17-03-17 23:23:17.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:17.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:17.138 -07 000000475 INF: FPGA: Recv ZSGSRD 35946
17-03-17 23:23:17.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:17.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:17.148 -07 000000593 INF: FPGA: Recv ZSGSRD 35951
17-03-17 23:23:17.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:17.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:17.158 -07 000000462 INF: FPGA: Recv ZSGSRD 35952
17-03-17 23:23:17.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:17.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:17.168 -07 000000480 INF: FPGA: Recv ZSGSRD 35947
17-03-17 23:23:17.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:17.178 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:23:17.178 -07 000000576 INF: FPGA: Recv ZPIEZORD 31840
17-03-17 23:23:17.188 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:17.188 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.709 V. Piezo Error = -9.1 V.
17-03-17 23:23:17.188 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.3 um, Read 10 ADC samples: Avg = 35950 (-170.4 uncal um), Error = 0.9 uncal um, Median = 35949 (-170.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35946 (-170.4 uncal um), Max = 35956 (-170.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:23:17.188 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35950, posNoise = 6, negNoise = 4
17-03-17 23:23:17.188 -07 000000610 INF: Z Motor: After move to -0.171261, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:23:17.188 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 23:23:17.188 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:23:17.188 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:23:17.188 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:23:17.188 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:23:17.188 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:23:17.188 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:23:17.188 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:23:17.188 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:23:17.188 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:23:17.188 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:23:17.188 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:23:17.188 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:23:17.198 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 23:23:17.198 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:23:17.198 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:23:17.198 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:23:17.208 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 23:23:17.208 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 23:23:17.208 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 23:23:17.208 -07 000000593 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:23:17.208 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 474 474 228 228 37588 150\n [Camera]
17-03-17 23:23:17.408 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:23:17.878 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 666
17-03-17 23:23:17.878 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 666
17-03-17 23:23:17.888 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:23:17.888 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:23:17.888 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 23:23:17.888 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 666
17-03-17 23:23:17.888 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 666
17-03-17 23:23:17.888 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:23:17.888 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:23:17.888 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-17 23:23:18.078 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37588 859
17-03-17 23:23:18.228 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1009
17-03-17 23:23:18.258 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 23:23:18.258 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 23:23:18.258 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:23:18.258 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 23:23:18.258 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 23:23:18.268 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:23:18.268 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:23:18.268 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 23:23:18.268 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 23:23:18.278 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 23:23:18.458 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1237
17-03-17 23:23:18.458 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1237
17-03-17 23:23:18.458 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1237
17-03-17 23:23:18.458 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1237
17-03-17 23:23:18.458 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:23:18.458 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:23:18.458 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start.
17-03-17 23:23:18.458 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:23:18.458 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:23:18.458 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-17 23:23:18.648 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1430
17-03-17 23:23:18.648 -07 000000486 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:23:18.648 -07 000000610 INF: FPGA: 'CAMDBLSNAP 474 474 228 228 37588 150' command took 2 ms to send, 1432 ms to get response, and 1439 ms overall
17-03-17 23:23:18.648 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:23:18.648 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56396484375, Z-Position -0.171273778507441. ------
17-03-17 23:23:18.648 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:23:18.648 -07 000000478 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17756 mm
17-03-17 23:23:18.648 -07 000000478 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:23:18.658 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:23:18.658 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 5 ms to get response, and 6 ms overall
17-03-17 23:23:18.658 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 38789, sync = True, waitForSettling = False)
17-03-17 23:23:18.658 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 23:23:18.658 -07 000000382 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-17 23:23:18.658 -07 000000486 INF: Z Motor: Moving to -0.177565 mm, started at -0.171274 mm, distance = -6.29 um
17-03-17 23:23:18.658 -07 000000551 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:23:18.668 -07 000000486 INF: FPGA: Xmit ZDACW 38789\n [Z Motor]
17-03-17 23:23:18.668 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 23:23:18.678 -07 000000486 INF: FPGA: 'ZDACW 38789' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 23:23:18.678 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:23:18.678 -07 000000623 INF: FPGA: Recv YRDPOS 126083
17-03-17 23:23:18.688 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:23:18.688 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 23:23:18.688 -07 000000382 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:23:18.688 -07 000000382 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:23:18.688 -07 000000382 INF: Y Motor: Moving 1342 steps-18
17-03-17 23:23:18.688 -07 000000475 INF: FPGA: Recv ZDACR 38789
17-03-17 23:23:18.698 -07 000000486 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:23:18.698 -07 000000486 INF: Z Motor: MoveAbsStepped took 34 ms (did NOT wait for settling yet))
17-03-17 23:23:18.698 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:23:18.858 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 23:23:18.858 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 23:23:18.858 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:23:18.858 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 23:23:18.858 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 23:23:18.858 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:23:18.858 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:23:18.858 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 23:23:18.858 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 23:23:18.858 -07 000000593 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:23:18.858 -07 000000551 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 199 ms to get response, and 204 ms overall
17-03-17 23:23:18.868 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 23:23:19.068 -07 000000475 INF: FPGA: Recv YMVTILE
17-03-17 23:23:19.068 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 23:23:19.118 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:23:19.118 -07 000000486 INF: FPGA: Recv YRDPOS 127785
17-03-17 23:23:19.128 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:19.128 -07 000000382 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:23:19.128 -07 000000382 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 23:23:19.128 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.839 mm, average velocity = 2.167 mm/sec
17-03-17 23:23:20.078 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:23:20.078 -07 000000623 INF: FPGA: Recv YRDPOS 127786
17-03-17 23:23:20.088 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:23:20.088 -07 000000382 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:23:20.108 -07 000000382 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:23:20.108 -07 000000382 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 23:23:20.108 -07 000000382 INF: Y Motor: Moved to 62.3955 after 1448 ms (table move)
17-03-17 23:23:20.108 -07 000000478 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177565 mm (DAC = 38789)
17-03-17 23:23:20.108 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:20.118 -07 000000593 INF: FPGA: Recv ZSGSRD 36943
17-03-17 23:23:20.118 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 23:23:20.118 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:20.118 -07 000000551 INF: FPGA: Recv ZSGSRD 36930
17-03-17 23:23:20.128 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:23:20.128 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:20.128 -07 000000433 INF: FPGA: Recv ZSGSRD 36932
17-03-17 23:23:20.138 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:20.138 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:20.138 -07 000000429 INF: FPGA: Recv ZSGSRD 36921
17-03-17 23:23:20.148 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:20.148 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:20.148 -07 000000551 INF: FPGA: Recv ZSGSRD 36934
17-03-17 23:23:20.158 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:20.158 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:20.158 -07 000000429 INF: FPGA: Recv ZSGSRD 36931
17-03-17 23:23:20.168 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:20.168 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:20.168 -07 000000433 INF: FPGA: Recv ZSGSRD 36927
17-03-17 23:23:20.178 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:20.178 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:20.178 -07 000000429 INF: FPGA: Recv ZSGSRD 36926
17-03-17 23:23:20.188 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:20.188 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:20.188 -07 000000502 INF: FPGA: Recv ZSGSRD 36932
17-03-17 23:23:20.198 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:20.198 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:20.198 -07 000000433 INF: FPGA: Recv ZSGSRD 36932
17-03-17 23:23:20.208 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:20.208 -07 000000478 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:23:20.208 -07 000000501 INF: FPGA: Recv ZPIEZORD 33155
17-03-17 23:23:20.218 -07 000000478 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:20.218 -07 000000478 INF: Z Motor: Piezo is near 50.8 V (nominally 0 to 100 V), expect near 59.2 V, since DAC is at 5.919 V. Piezo Error = -8.4 V.
17-03-17 23:23:20.218 -07 000000478 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.6 um, Read 10 ADC samples: Avg = 36931 (-176.7 uncal um), Error = 0.9 uncal um, Median = 36932 (-176.7 uncal um), StdDev = 6 (0.0 uncal um), Range = 22 (0.1 uncal um), Min = 36921 (-176.6 uncal um), Max = 36943 (-176.8 uncal um), Pos Noise = 12 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 23:23:20.218 -07 000000478 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36931, posNoise = 12, negNoise = 10
17-03-17 23:23:20.218 -07 000000478 INF: Z Motor: After move to -0.177565, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:23:20.218 -07 000000478 INF: Z Motor: Settle wait time = 1452 ms, measure time = 102 ms (allowed 150 ms), total time = 1554 ms
17-03-17 23:23:20.218 -07 000000478 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 23:23:20.268 -07 000000478 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1611 ms
17-03-17 23:23:20.268 -07 000000478 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:23:20.268 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:23:20.268 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:23:20.268 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:23:20.268 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:23:20.268 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:23:20.268 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:23:20.268 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:23:20.268 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:23:20.278 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:23:20.278 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:23:20.288 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 23:23:20.288 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 23:23:20.288 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:23:20.328 -07 000000478 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:23:20.528 -07 000000475 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:23:20.528 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:23:20.528 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:23:20.528 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2656407768, 0x0, 559484976) start.
17-03-17 23:23:20.568 -07 000000382 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:23:20.568 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-17 23:23:20.568 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 23:23:20.658 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2656407768, 0x0, 559484976) end. Duration was 128 ms.
17-03-17 23:23:20.658 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:23:20.658 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 23:23:20.668 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 23:23:20.768 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:23:20.768 -07 000000382 INF: Autofocus start
17-03-17 23:23:20.768 -07 000000382 INF: MeasureProfile start
17-03-17 23:23:20.768 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:23:20.778 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:23:20.778 -07 000000433 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:23:20.778 -07 000000382 INF: MeasureProfile done
17-03-17 23:23:20.788 -07 000000382 INF: X=16  Z correction [um]=0.01042744
17-03-17 23:23:20.788 -07 000000382 INF: Autofocus finished
17-03-17 23:23:20.978 -07 000000475 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:23:20.978 -07 000000433 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:23:20.978 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.177575930618509. ----------
17-03-17 23:23:20.978 -07 000000610 INF: Cycle	75	Tile	4	Exposure Settings		A	474	G	228	T	228	C	474
17-03-17 23:23:20.988 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37303, sync = True, waitForSettling = True)
17-03-17 23:23:20.988 -07 000000610 INF: Z Motor: Moving to -0.170762 mm, started at -0.177576 mm, distance = 6.81 um
17-03-17 23:23:20.988 -07 000000610 INF: FPGA: Xmit ZDACW 37303\n [Z Motor]
17-03-17 23:23:20.988 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 23:23:20.998 -07 000000610 INF: FPGA: 'ZDACW 37303' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:23:20.998 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:23:20.998 -07 000000576 INF: FPGA: Recv ZDACR 37303
17-03-17 23:23:21.008 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:21.008 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:23:21.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:21.158 -07 000000475 INF: FPGA: Recv ZSGSRD 35874
17-03-17 23:23:21.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:21.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:21.168 -07 000000576 INF: FPGA: Recv ZSGSRD 35876
17-03-17 23:23:21.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:21.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:21.178 -07 000000382 INF: FPGA: Recv ZSGSRD 35872
17-03-17 23:23:21.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:21.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:21.188 -07 000000502 INF: FPGA: Recv ZSGSRD 35871
17-03-17 23:23:21.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:21.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:21.198 -07 000000593 INF: FPGA: Recv ZSGSRD 35873
17-03-17 23:23:21.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:21.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:21.208 -07 000000576 INF: FPGA: Recv ZSGSRD 35871
17-03-17 23:23:21.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:21.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:21.218 -07 000000623 INF: FPGA: Recv ZSGSRD 35869
17-03-17 23:23:21.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:21.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:21.228 -07 000000502 INF: FPGA: Recv ZSGSRD 35873
17-03-17 23:23:21.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 11 ms overall
17-03-17 23:23:21.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:21.238 -07 000000433 INF: FPGA: Recv ZSGSRD 35872
17-03-17 23:23:21.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:23:21.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:21.248 -07 000000576 INF: FPGA: Recv ZSGSRD 35877
17-03-17 23:23:21.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:21.258 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:23:21.258 -07 000000623 INF: FPGA: Recv ZPIEZORD 31779
17-03-17 23:23:21.268 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:21.268 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.692 V. Piezo Error = -9.0 V.
17-03-17 23:23:21.268 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.8 um, Read 10 ADC samples: Avg = 35873 (-169.9 uncal um), Error = 0.9 uncal um, Median = 35872 (-169.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35869 (-169.9 uncal um), Max = 35877 (-169.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:23:21.268 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35873, posNoise = 4, negNoise = 4
17-03-17 23:23:21.268 -07 000000610 INF: Z Motor: After move to -0.170762, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:23:21.268 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 23:23:21.268 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:23:21.268 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:23:21.268 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:23:21.268 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:23:21.268 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:23:21.268 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:23:21.268 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:23:21.268 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:23:21.268 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:23:21.268 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:23:21.268 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 23:23:21.268 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:23:21.278 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 23:23:21.278 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:23:21.278 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 23:23:21.278 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:23:21.278 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 23:23:21.288 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 23:23:21.288 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 23:23:21.288 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:23:21.288 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 474 474 228 228 37480 150\n [Camera]
17-03-17 23:23:21.398 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 75, FrontChillerTemperature: 4.007176,
17-03-17 23:23:21.488 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:23:21.958 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 666
17-03-17 23:23:21.958 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 666
17-03-17 23:23:21.968 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 666
17-03-17 23:23:21.968 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 666
17-03-17 23:23:21.968 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:23:21.968 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:23:21.968 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start.
17-03-17 23:23:21.968 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:23:21.968 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:23:21.968 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) start.
17-03-17 23:23:22.058 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:23:22.058 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 74. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1192, R2=1246, Total=2438. Warn if over 250 bubbles per interval.
17-03-17 23:23:22.158 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37480 859
17-03-17 23:23:22.308 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1009
17-03-17 23:23:22.338 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 23:23:22.338 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 23:23:22.338 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:23:22.348 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:23:22.348 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 23:23:22.348 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 23:23:22.348 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:23:22.348 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:23:22.348 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 23:23:22.348 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 23:23:22.528 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1237
17-03-17 23:23:22.528 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1237
17-03-17 23:23:22.538 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:23:22.678 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1237
17-03-17 23:23:22.678 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1237
17-03-17 23:23:22.678 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:23:22.688 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:23:22.688 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 23:23:22.688 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:23:22.688 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 23:23:22.728 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1430
17-03-17 23:23:22.728 -07 000000475 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:23:22.728 -07 000000610 INF: FPGA: 'CAMDBLSNAP 474 474 228 228 37480 150' command took 2 ms to send, 1430 ms to get response, and 1436 ms overall
17-03-17 23:23:22.728 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:23:22.728 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.3955078125, Z-Position -0.170779114172526. ------
17-03-17 23:23:22.728 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17724 mm
17-03-17 23:23:22.728 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:23:22.728 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:23:22.728 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 23:23:22.728 -07 000000480 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-17 23:23:22.728 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:23:22.738 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:23:22.738 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 38718, sync = True, waitForSettling = False)
17-03-17 23:23:22.738 -07 000000502 INF: Z Motor: Moving to -0.177240 mm, started at -0.170779 mm, distance = -6.46 um
17-03-17 23:23:22.738 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:23:22.738 -07 000000576 INF: FPGA: Recv YRDPOS 127786
17-03-17 23:23:22.748 -07 000000480 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:23:22.748 -07 000000480 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:23:22.748 -07 000000480 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:23:22.748 -07 000000480 INF: Y Motor: Moving 1339 steps-16
17-03-17 23:23:22.748 -07 000000623 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:23:22.758 -07 000000502 INF: FPGA: Xmit ZDACW 38718\n [Z Motor]
17-03-17 23:23:22.758 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 23:23:22.768 -07 000000502 INF: FPGA: 'ZDACW 38718' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:23:22.768 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:23:22.778 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:23:22.778 -07 000000429 INF: FPGA: Recv ZDACR 38718
17-03-17 23:23:22.788 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:23:22.788 -07 000000502 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 23:23:22.948 -07 000000475 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:23:22.948 -07 000000623 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 23:23:23.078 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 23:23:23.078 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 23:23:23.078 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:23:23.078 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 23:23:23.078 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 23:23:23.078 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:23:23.088 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:23:23.088 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 551 ms.
17-03-17 23:23:23.088 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:23:23.088 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 23:23:23.148 -07 000000475 INF: FPGA: Recv YMVTILE
17-03-17 23:23:23.148 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 3 ms to send, 371 ms to get response, and 401 ms overall
17-03-17 23:23:23.188 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:23:23.188 -07 000000623 INF: FPGA: Recv YRDPOS 129483
17-03-17 23:23:23.198 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:23:23.198 -07 000000480 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:23:23.198 -07 000000480 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 23:23:23.198 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 401 ms, distance = 0.837 mm, average velocity = 2.088 mm/sec
17-03-17 23:23:24.148 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:23:24.148 -07 000000623 INF: FPGA: Recv YRDPOS 129483
17-03-17 23:23:24.158 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:23:24.158 -07 000000480 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:23:24.178 -07 000000480 INF: Y Motor: After move to 63.232609, error = -0.008488, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:23:24.178 -07 000000480 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:23:24.178 -07 000000480 INF: Y Motor: Moved to 63.2241 after 1446 ms (table move)
17-03-17 23:23:24.178 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177240 mm (DAC = 38718)
17-03-17 23:23:24.178 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:24.188 -07 000000623 INF: FPGA: Recv ZSGSRD 36881
17-03-17 23:23:24.188 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 23:23:24.188 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:24.188 -07 000000462 INF: FPGA: Recv ZSGSRD 36884
17-03-17 23:23:24.198 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:23:24.198 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:24.198 -07 000000433 INF: FPGA: Recv ZSGSRD 36879
17-03-17 23:23:24.208 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:24.208 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:24.208 -07 000000486 INF: FPGA: Recv ZSGSRD 36874
17-03-17 23:23:24.218 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:24.218 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:24.218 -07 000000593 INF: FPGA: Recv ZSGSRD 36875
17-03-17 23:23:24.228 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:24.228 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:24.228 -07 000000551 INF: FPGA: Recv ZSGSRD 36876
17-03-17 23:23:24.238 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:24.238 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:24.238 -07 000000486 INF: FPGA: Recv ZSGSRD 36887
17-03-17 23:23:24.248 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:24.248 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:24.248 -07 000000478 INF: FPGA: Recv ZSGSRD 36881
17-03-17 23:23:24.258 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:24.258 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:24.258 -07 000000576 INF: FPGA: Recv ZSGSRD 36879
17-03-17 23:23:24.268 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:24.268 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:24.268 -07 000000478 INF: FPGA: Recv ZSGSRD 36882
17-03-17 23:23:24.278 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:24.278 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:23:24.278 -07 000000576 INF: FPGA: Recv ZPIEZORD 33080
17-03-17 23:23:24.288 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:24.288 -07 000000501 INF: Z Motor: Piezo is near 50.7 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.908 V. Piezo Error = -8.4 V.
17-03-17 23:23:24.288 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.2 um, Read 10 ADC samples: Avg = 36880 (-176.4 uncal um), Error = 0.9 uncal um, Median = 36880 (-176.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36874 (-176.3 uncal um), Max = 36887 (-176.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:23:24.288 -07 000000501 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36880, posNoise = 7, negNoise = 6
17-03-17 23:23:24.288 -07 000000501 INF: Z Motor: After move to -0.177240, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:23:24.288 -07 000000501 INF: Z Motor: Settle wait time = 1448 ms, measure time = 102 ms (allowed 150 ms), total time = 1550 ms
17-03-17 23:23:24.288 -07 000000501 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 23:23:24.338 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-17 23:23:24.338 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:23:24.338 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:23:24.338 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:23:24.338 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:23:24.338 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:23:24.338 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:23:24.338 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:23:24.338 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 23:23:24.338 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:23:24.348 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:23:24.348 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:23:24.358 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 23:23:24.358 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 23:23:24.358 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:23:24.408 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:23:24.608 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:23:24.608 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:23:24.608 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:23:24.608 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1130172064, 0x0, 559484976) start.
17-03-17 23:23:24.638 -07 000000551 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:23:24.648 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-17 23:23:24.648 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 285 ms overall
17-03-17 23:23:24.728 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1130172064, 0x0, 559484976) end. Duration was 122 ms.
17-03-17 23:23:24.728 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:23:24.728 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 23:23:24.728 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-17 23:23:24.748 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:23:24.748 -07 000000382 INF: Autofocus start
17-03-17 23:23:24.748 -07 000000382 INF: MeasureProfile start
17-03-17 23:23:24.748 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:23:24.758 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:23:24.758 -07 000000429 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:23:24.768 -07 000000382 INF: MeasureProfile done
17-03-17 23:23:24.768 -07 000000382 INF: X=32  Z correction [um]=0.09220707
17-03-17 23:23:24.768 -07 000000382 INF: Autofocus finished
17-03-17 23:23:24.958 -07 000000478 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:23:24.958 -07 000000429 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:23:24.958 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22412109375, Z-position -0.177248295799279. ----------
17-03-17 23:23:24.958 -07 000000610 INF: Cycle	75	Tile	5	Exposure Settings		A	474	G	228	T	228	C	474
17-03-17 23:23:24.968 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37250, sync = True, waitForSettling = True)
17-03-17 23:23:24.968 -07 000000610 INF: Z Motor: Moving to -0.170520 mm, started at -0.177248 mm, distance = 6.73 um
17-03-17 23:23:24.968 -07 000000610 INF: FPGA: Xmit ZDACW 37250\n [Z Motor]
17-03-17 23:23:24.968 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 23:23:24.978 -07 000000610 INF: FPGA: 'ZDACW 37250' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:23:24.978 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:23:24.978 -07 000000576 INF: FPGA: Recv ZDACR 37250
17-03-17 23:23:24.988 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:24.988 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:23:25.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:25.138 -07 000000462 INF: FPGA: Recv ZSGSRD 35831
17-03-17 23:23:25.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:25.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:25.148 -07 000000593 INF: FPGA: Recv ZSGSRD 35830
17-03-17 23:23:25.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:25.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:25.158 -07 000000502 INF: FPGA: Recv ZSGSRD 35837
17-03-17 23:23:25.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:25.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:25.168 -07 000000576 INF: FPGA: Recv ZSGSRD 35836
17-03-17 23:23:25.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:25.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:25.178 -07 000000486 INF: FPGA: Recv ZSGSRD 35833
17-03-17 23:23:25.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:25.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:25.188 -07 000000475 INF: FPGA: Recv ZSGSRD 35836
17-03-17 23:23:25.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:25.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:25.198 -07 000000382 INF: FPGA: Recv ZSGSRD 35832
17-03-17 23:23:25.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:25.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:25.208 -07 000000433 INF: FPGA: Recv ZSGSRD 35840
17-03-17 23:23:25.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:25.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:25.218 -07 000000502 INF: FPGA: Recv ZSGSRD 35832
17-03-17 23:23:25.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:25.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:25.228 -07 000000593 INF: FPGA: Recv ZSGSRD 35834
17-03-17 23:23:25.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:25.238 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:23:25.238 -07 000000478 INF: FPGA: Recv ZPIEZORD 31714
17-03-17 23:23:25.248 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:25.248 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.684 V. Piezo Error = -9.1 V.
17-03-17 23:23:25.248 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.5 um, Read 10 ADC samples: Avg = 35834 (-169.7 uncal um), Error = 0.9 uncal um, Median = 35834 (-169.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35830 (-169.6 uncal um), Max = 35840 (-169.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:23:25.248 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35834, posNoise = 6, negNoise = 4
17-03-17 23:23:25.248 -07 000000610 INF: Z Motor: After move to -0.170520, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:23:25.248 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 23:23:25.248 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:23:25.248 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:23:25.248 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:23:25.248 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:23:25.248 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:23:25.248 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:23:25.248 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:23:25.248 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:23:25.248 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms.
17-03-17 23:23:25.248 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:23:25.248 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:23:25.248 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:23:25.258 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 23:23:25.258 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:23:25.258 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:23:25.258 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:23:25.258 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 23:23:25.258 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:23:25.268 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 23:23:25.268 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 23:23:25.268 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 474 474 228 228 37427 150\n [Camera]
17-03-17 23:23:25.468 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:23:25.938 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 667
17-03-17 23:23:25.938 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 667
17-03-17 23:23:25.948 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:23:25.948 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 667
17-03-17 23:23:25.948 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 667
17-03-17 23:23:25.948 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:23:26.058 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:23:26.058 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 23:23:26.068 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:23:26.068 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 23:23:26.138 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37427 859
17-03-17 23:23:26.288 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1009
17-03-17 23:23:26.438 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 23:23:26.438 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 23:23:26.438 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:23:26.438 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 23:23:26.438 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 23:23:26.438 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:23:26.438 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:23:26.438 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 496 ms.
17-03-17 23:23:26.438 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:23:26.448 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 503 ms.
17-03-17 23:23:26.518 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1237
17-03-17 23:23:26.518 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1237
17-03-17 23:23:26.518 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:23:26.518 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1237
17-03-17 23:23:26.518 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1237
17-03-17 23:23:26.518 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:23:26.528 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:23:26.528 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 23:23:26.528 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:23:26.528 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1144848144, 0x0, 418435064) start.
17-03-17 23:23:26.708 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1430
17-03-17 23:23:26.708 -07 000000623 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:23:26.708 -07 000000610 INF: FPGA: 'CAMDBLSNAP 474 474 228 228 37427 150' command took 2 ms to send, 1431 ms to get response, and 1437 ms overall
17-03-17 23:23:26.708 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:23:26.708 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22412109375, Z-Position -0.170528569898997. ------
17-03-17 23:23:26.708 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:23:26.708 -07 000000551 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17705 mm
17-03-17 23:23:26.708 -07 000000551 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:23:26.718 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 23:23:26.718 -07 000000623 INF: Y Motor: Moving to 64.0626 mm, started at 63.2241 mm, delta = 0.8385 mm
17-03-17 23:23:26.718 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 38676, sync = True, waitForSettling = False)
17-03-17 23:23:26.718 -07 000000501 INF: Z Motor: Moving to -0.177047 mm, started at -0.170529 mm, distance = -6.52 um
17-03-17 23:23:26.718 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:23:26.718 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:23:26.718 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 6 ms overall
17-03-17 23:23:26.718 -07 000000429 INF: FPGA: Recv YRDPOS 129484
17-03-17 23:23:26.728 -07 000000486 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:23:26.728 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:23:26.728 -07 000000623 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:23:26.728 -07 000000623 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:23:26.728 -07 000000623 INF: Y Motor: Moving 1341 steps-17
17-03-17 23:23:26.738 -07 000000501 INF: FPGA: Xmit ZDACW 38676\n [Z Motor]
17-03-17 23:23:26.738 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 23:23:26.748 -07 000000501 INF: FPGA: 'ZDACW 38676' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 23:23:26.748 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:23:26.758 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:23:26.758 -07 000000382 INF: FPGA: Recv ZDACR 38676
17-03-17 23:23:26.768 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:23:26.768 -07 000000501 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-17 23:23:26.788 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 75, FrontChillerTemperature: 4.011254,
17-03-17 23:23:26.898 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 1144848144, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 23:23:26.898 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 23:23:26.898 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:23:26.908 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:23:26.908 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 23:23:26.908 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 23:23:26.908 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:23:26.908 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 23:23:26.908 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:23:26.908 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 23:23:26.928 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:23:26.928 -07 000000486 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 209 ms overall
17-03-17 23:23:27.058 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:23:27.068 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 74. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1192, R2=1246, Total=2438. Warn if over 250 bubbles per interval.
17-03-17 23:23:27.118 -07 000000593 INF: FPGA: Recv YMVTILE
17-03-17 23:23:27.118 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall
17-03-17 23:23:27.168 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:23:27.168 -07 000000480 INF: FPGA: Recv YRDPOS 131189
17-03-17 23:23:27.178 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:27.178 -07 000000623 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:23:27.178 -07 000000623 INF: Y Motor: Position error before settling (table move) = -11 encoder counts (-0.005 mm)
17-03-17 23:23:27.178 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.838 mm, average velocity = 2.128 mm/sec
17-03-17 23:23:28.128 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:23:28.128 -07 000000480 INF: FPGA: Recv YRDPOS 131189
17-03-17 23:23:28.138 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:23:28.138 -07 000000623 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:23:28.158 -07 000000623 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:23:28.158 -07 000000623 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:23:28.158 -07 000000623 INF: Y Motor: Moved to 64.0571 after 1440 ms (table move)
17-03-17 23:23:28.158 -07 000000551 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177047 mm (DAC = 38676)
17-03-17 23:23:28.158 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:28.158 -07 000000486 INF: FPGA: Recv ZSGSRD 36851
17-03-17 23:23:28.168 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:23:28.168 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:28.168 -07 000000433 INF: FPGA: Recv ZSGSRD 36852
17-03-17 23:23:28.178 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:28.178 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:28.178 -07 000000501 INF: FPGA: Recv ZSGSRD 36850
17-03-17 23:23:28.188 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:28.188 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:28.188 -07 000000382 INF: FPGA: Recv ZSGSRD 36854
17-03-17 23:23:28.198 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:28.198 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:28.198 -07 000000429 INF: FPGA: Recv ZSGSRD 36852
17-03-17 23:23:28.208 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:28.208 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:28.208 -07 000000462 INF: FPGA: Recv ZSGSRD 36849
17-03-17 23:23:28.218 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:28.218 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:28.218 -07 000000576 INF: FPGA: Recv ZSGSRD 36847
17-03-17 23:23:28.228 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:28.228 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:28.228 -07 000000462 INF: FPGA: Recv ZSGSRD 36850
17-03-17 23:23:28.238 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:28.238 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:28.238 -07 000000576 INF: FPGA: Recv ZSGSRD 36850
17-03-17 23:23:28.248 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:28.248 -07 000000551 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:28.248 -07 000000501 INF: FPGA: Recv ZSGSRD 36846
17-03-17 23:23:28.258 -07 000000551 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:28.258 -07 000000551 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:23:28.258 -07 000000433 INF: FPGA: Recv ZPIEZORD 33052
17-03-17 23:23:28.268 -07 000000551 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:28.268 -07 000000551 INF: Z Motor: Piezo is near 50.6 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.902 V. Piezo Error = -8.4 V.
17-03-17 23:23:28.268 -07 000000551 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.0 um, Read 10 ADC samples: Avg = 36850 (-176.2 uncal um), Error = 0.9 uncal um, Median = 36850 (-176.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36846 (-176.1 uncal um), Max = 36854 (-176.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:23:28.268 -07 000000551 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36850, posNoise = 4, negNoise = 4
17-03-17 23:23:28.268 -07 000000551 INF: Z Motor: After move to -0.177047, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:23:28.268 -07 000000551 INF: Z Motor: Settle wait time = 1443 ms, measure time = 105 ms (allowed 150 ms), total time = 1548 ms
17-03-17 23:23:28.268 -07 000000551 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 23:23:28.318 -07 000000551 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-17 23:23:28.318 -07 000000551 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:23:28.318 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:23:28.318 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:23:28.318 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:23:28.318 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:23:28.318 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:23:28.318 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:23:28.328 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:23:28.328 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:23:28.328 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:23:28.328 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:23:28.338 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 23:23:28.338 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 23:23:28.338 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:23:28.388 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:23:28.588 -07 000000433 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:23:28.588 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:23:28.588 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:23:28.588 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1130172064, 0x0, 559484976) start.
17-03-17 23:23:28.628 -07 000000478 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:23:28.628 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 23:23:28.628 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 23:23:28.718 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1130172064, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 23:23:28.718 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:23:28.718 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:23:28.718 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 23:23:28.728 -07 000000486 INF: Autofocus start
17-03-17 23:23:28.728 -07 000000486 INF: MeasureProfile start
17-03-17 23:23:28.728 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:23:28.728 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:23:28.738 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:23:28.738 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:23:28.738 -07 000000486 INF: MeasureProfile done
17-03-17 23:23:28.738 -07 000000486 INF: X=0  Z correction [um]=-0.0713522
17-03-17 23:23:28.738 -07 000000486 INF: Autofocus finished
17-03-17 23:23:28.938 -07 000000486 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:23:28.938 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:23:28.938 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.177055569435026. ----------
17-03-17 23:23:28.938 -07 000000610 INF: Cycle	75	Tile	6	Exposure Settings		A	474	G	228	T	228	C	474
17-03-17 23:23:28.948 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37173, sync = True, waitForSettling = True)
17-03-17 23:23:28.948 -07 000000610 INF: Z Motor: Moving to -0.170167 mm, started at -0.177056 mm, distance = 6.89 um
17-03-17 23:23:28.948 -07 000000610 INF: FPGA: Xmit ZDACW 37173\n [Z Motor]
17-03-17 23:23:28.948 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 23:23:28.958 -07 000000610 INF: FPGA: 'ZDACW 37173' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:28.958 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:23:28.958 -07 000000593 INF: FPGA: Recv ZDACR 37173
17-03-17 23:23:28.968 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:28.968 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:23:29.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:29.118 -07 000000480 INF: FPGA: Recv ZSGSRD 35783
17-03-17 23:23:29.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:23:29.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:29.128 -07 000000486 INF: FPGA: Recv ZSGSRD 35781
17-03-17 23:23:29.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:29.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:29.138 -07 000000502 INF: FPGA: Recv ZSGSRD 35778
17-03-17 23:23:29.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:29.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:29.148 -07 000000462 INF: FPGA: Recv ZSGSRD 35777
17-03-17 23:23:29.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:29.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:29.158 -07 000000382 INF: FPGA: Recv ZSGSRD 35781
17-03-17 23:23:29.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:29.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:29.168 -07 000000478 INF: FPGA: Recv ZSGSRD 35780
17-03-17 23:23:29.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:29.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:29.178 -07 000000433 INF: FPGA: Recv ZSGSRD 35780
17-03-17 23:23:29.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:23:29.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:29.188 -07 000000486 INF: FPGA: Recv ZSGSRD 35779
17-03-17 23:23:29.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:29.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:29.198 -07 000000429 INF: FPGA: Recv ZSGSRD 35780
17-03-17 23:23:29.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:29.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:29.208 -07 000000462 INF: FPGA: Recv ZSGSRD 35775
17-03-17 23:23:29.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:29.218 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:23:29.218 -07 000000382 INF: FPGA: Recv ZPIEZORD 31646
17-03-17 23:23:29.228 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:29.228 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.672 V. Piezo Error = -9.1 V.
17-03-17 23:23:29.228 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.2 um, Read 10 ADC samples: Avg = 35779 (-169.3 uncal um), Error = 0.9 uncal um, Median = 35780 (-169.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35775 (-169.3 uncal um), Max = 35783 (-169.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:23:29.228 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35779, posNoise = 4, negNoise = 4
17-03-17 23:23:29.228 -07 000000610 INF: Z Motor: After move to -0.170167, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:23:29.228 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 23:23:29.228 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:23:29.228 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:23:29.228 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:23:29.228 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:23:29.228 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:23:29.228 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:23:29.228 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:23:29.228 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:23:29.228 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:23:29.228 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:23:29.228 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:23:29.228 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:23:29.228 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 23:23:29.228 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:23:29.228 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:23:29.228 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:23:29.238 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 23:23:29.238 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 23:23:29.238 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 23:23:29.238 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:23:29.248 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 474 474 228 228 37350 150\n [Camera]
17-03-17 23:23:29.448 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:23:29.918 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 666
17-03-17 23:23:29.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 666
17-03-17 23:23:29.918 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:23:29.918 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 666
17-03-17 23:23:29.918 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 666
17-03-17 23:23:29.918 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:23:29.928 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:23:29.928 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 23:23:29.928 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:23:29.928 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 23:23:30.108 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37350 859
17-03-17 23:23:30.258 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1009
17-03-17 23:23:30.298 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 23:23:30.298 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 23:23:30.298 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:23:30.308 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:23:30.308 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 23:23:30.308 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 23:23:30.308 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:23:30.308 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:23:30.308 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 23:23:30.308 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 23:23:30.488 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1237
17-03-17 23:23:30.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1237
17-03-17 23:23:30.488 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:23:30.488 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1237
17-03-17 23:23:30.488 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1237
17-03-17 23:23:30.498 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:23:30.498 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:23:30.498 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-17 23:23:30.498 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:23:30.498 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 23:23:30.678 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1430
17-03-17 23:23:30.678 -07 000000433 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:23:30.678 -07 000000610 INF: FPGA: 'CAMDBLSNAP 474 474 228 228 37350 150' command took 2 ms to send, 1428 ms to get response, and 1436 ms overall
17-03-17 23:23:30.688 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:23:30.688 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05712890625, Z-Position -0.1701752382312. ------
17-03-17 23:23:30.688 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:23:30.688 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17627 mm
17-03-17 23:23:30.688 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:23:30.688 -07 000000433 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 23:23:30.688 -07 000000433 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-17 23:23:30.688 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 38506, sync = True, waitForSettling = False)
17-03-17 23:23:30.688 -07 000000623 INF: Z Motor: Moving to -0.176269 mm, started at -0.170175 mm, distance = -6.09 um
17-03-17 23:23:30.688 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:23:30.698 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:23:30.698 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:23:30.698 -07 000000502 INF: FPGA: Recv YRDPOS 131189
17-03-17 23:23:30.708 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:23:30.708 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:23:30.708 -07 000000433 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:23:30.708 -07 000000433 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:23:30.708 -07 000000433 INF: Y Motor: Moving 1337 steps-11
17-03-17 23:23:30.718 -07 000000623 INF: FPGA: Xmit ZDACW 38506\n [Z Motor]
17-03-17 23:23:30.718 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 23:23:30.728 -07 000000433 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:23:30.728 -07 000000623 INF: FPGA: 'ZDACW 38506' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 23:23:30.738 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:23:30.738 -07 000000475 INF: FPGA: Recv ZDACR 38506
17-03-17 23:23:30.748 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:23:30.748 -07 000000623 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 23:23:30.888 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 23:23:30.888 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 23:23:30.888 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:23:30.888 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 23:23:30.888 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 23:23:30.888 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:23:30.888 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:23:30.888 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:23:30.888 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 23:23:30.898 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 23:23:30.908 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:23:30.908 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 212 ms overall
17-03-17 23:23:31.098 -07 000000593 INF: FPGA: Recv YMVTILE
17-03-17 23:23:31.098 -07 000000433 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 23:23:31.138 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:23:31.148 -07 000000486 INF: FPGA: Recv YRDPOS 132872
17-03-17 23:23:31.148 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 23:23:31.148 -07 000000433 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:23:31.148 -07 000000433 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 23:23:31.148 -07 000000433 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.835 mm, average velocity = 2.104 mm/sec
17-03-17 23:23:32.058 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:23:32.068 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 74. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1192, R2=1246, Total=2438. Warn if over 250 bubbles per interval.
17-03-17 23:23:32.098 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:23:32.098 -07 000000480 INF: FPGA: Recv YRDPOS 132872
17-03-17 23:23:32.108 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:23:32.108 -07 000000433 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:23:32.128 -07 000000433 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:23:32.128 -07 000000433 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:23:32.128 -07 000000433 INF: Y Motor: Moved to 64.8789 after 1438 ms (table move)
17-03-17 23:23:32.138 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176269 mm (DAC = 38506)
17-03-17 23:23:32.148 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 75, FrontChillerTemperature: 4.012614,
17-03-17 23:23:32.158 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:32.158 -07 000000429 INF: FPGA: Recv ZSGSRD 36732
17-03-17 23:23:32.168 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 23:23:32.178 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:32.178 -07 000000502 INF: FPGA: Recv ZSGSRD 36727
17-03-17 23:23:32.188 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:23:32.208 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:32.208 -07 000000551 INF: FPGA: Recv ZSGSRD 36720
17-03-17 23:23:32.218 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 23:23:32.218 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:32.218 -07 000000475 INF: FPGA: Recv ZSGSRD 36731
17-03-17 23:23:32.228 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:32.238 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:32.238 -07 000000593 INF: FPGA: Recv ZSGSRD 36735
17-03-17 23:23:32.248 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:23:32.248 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:32.248 -07 000000478 INF: FPGA: Recv ZSGSRD 36734
17-03-17 23:23:32.258 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:32.258 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:32.258 -07 000000382 INF: FPGA: Recv ZSGSRD 36725
17-03-17 23:23:32.268 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:32.268 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:32.268 -07 000000593 INF: FPGA: Recv ZSGSRD 36731
17-03-17 23:23:32.278 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:32.278 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:32.278 -07 000000623 INF: FPGA: Recv ZSGSRD 36730
17-03-17 23:23:32.288 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:32.288 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:32.288 -07 000000382 INF: FPGA: Recv ZSGSRD 36725
17-03-17 23:23:32.298 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:32.298 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:23:32.298 -07 000000433 INF: FPGA: Recv ZPIEZORD 32946
17-03-17 23:23:32.308 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:23:32.308 -07 000000576 INF: Z Motor: Piezo is near 50.4 V (nominally 0 to 100 V), expect near 58.8 V, since DAC is at 5.876 V. Piezo Error = -8.4 V.
17-03-17 23:23:32.308 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.3 um, Read 10 ADC samples: Avg = 36729 (-175.4 uncal um), Error = 0.9 uncal um, Median = 36730 (-175.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36720 (-175.3 uncal um), Max = 36735 (-175.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 23:23:32.308 -07 000000576 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36729, posNoise = 6, negNoise = 9
17-03-17 23:23:32.308 -07 000000576 INF: Z Motor: After move to -0.176269, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:23:32.308 -07 000000576 INF: Z Motor: Settle wait time = 1442 ms, measure time = 169 ms (allowed 150 ms), total time = 1611 ms
17-03-17 23:23:32.308 -07 000000576 INF: Z Motor: Warning: Actual position measuring time = 169 ms, longer than max expected time of 150 ms
17-03-17 23:23:32.308 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1614 ms
17-03-17 23:23:32.308 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:23:32.308 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:23:32.308 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:23:32.308 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:23:32.308 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:23:32.308 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:23:32.308 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:23:32.308 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:23:32.308 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:23:32.318 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:23:32.318 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:23:32.318 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 23:23:32.318 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 23:23:32.328 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:23:32.368 -07 000000623 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:23:32.568 -07 000000475 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:23:32.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:23:32.568 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:23:32.568 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 619151688, 0x0, 559484976) start.
17-03-17 23:23:32.608 -07 000000433 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:23:32.608 -07 000000623 INF: FPGA: Recv CAMSNAP
17-03-17 23:23:32.608 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 23:23:32.688 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 619151688, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 23:23:32.688 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:23:32.688 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 23:23:32.688 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 23:23:32.708 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:23:32.708 -07 000000478 INF: Autofocus start
17-03-17 23:23:32.708 -07 000000478 INF: MeasureProfile start
17-03-17 23:23:32.708 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:23:32.718 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:23:32.718 -07 000000475 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:23:32.728 -07 000000478 INF: MeasureProfile done
17-03-17 23:23:32.728 -07 000000478 INF: X=16  Z correction [um]=0.01042744
17-03-17 23:23:32.728 -07 000000478 INF: Autofocus finished
17-03-17 23:23:32.918 -07 000000551 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:23:32.918 -07 000000475 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 198 ms to get response, and 203 ms overall
17-03-17 23:23:32.928 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.176278239765873. ----------
17-03-17 23:23:32.928 -07 000000610 INF: Cycle	75	Tile	7	Exposure Settings		A	474	G	228	T	228	C	474
17-03-17 23:23:32.928 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37021, sync = True, waitForSettling = True)
17-03-17 23:23:32.928 -07 000000610 INF: Z Motor: Moving to -0.169471 mm, started at -0.176278 mm, distance = 6.81 um
17-03-17 23:23:32.928 -07 000000610 INF: FPGA: Xmit ZDACW 37021\n [Z Motor]
17-03-17 23:23:32.928 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 23:23:32.938 -07 000000610 INF: FPGA: 'ZDACW 37021' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:23:32.938 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:23:32.938 -07 000000475 INF: FPGA: Recv ZDACR 37021
17-03-17 23:23:32.948 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:32.948 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:23:33.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:33.098 -07 000000462 INF: FPGA: Recv ZSGSRD 35673
17-03-17 23:23:33.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:33.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:33.108 -07 000000480 INF: FPGA: Recv ZSGSRD 35678
17-03-17 23:23:33.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:33.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:33.118 -07 000000502 INF: FPGA: Recv ZSGSRD 35673
17-03-17 23:23:33.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:33.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:33.128 -07 000000382 INF: FPGA: Recv ZSGSRD 35668
17-03-17 23:23:33.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:33.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:33.138 -07 000000623 INF: FPGA: Recv ZSGSRD 35664
17-03-17 23:23:33.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:33.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:33.148 -07 000000480 INF: FPGA: Recv ZSGSRD 35669
17-03-17 23:23:33.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:33.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:33.158 -07 000000502 INF: FPGA: Recv ZSGSRD 35679
17-03-17 23:23:33.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:33.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:33.168 -07 000000382 INF: FPGA: Recv ZSGSRD 35668
17-03-17 23:23:33.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:33.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:33.178 -07 000000475 INF: FPGA: Recv ZSGSRD 35668
17-03-17 23:23:33.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:33.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:33.188 -07 000000480 INF: FPGA: Recv ZSGSRD 35669
17-03-17 23:23:33.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:33.198 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:23:33.198 -07 000000462 INF: FPGA: Recv ZPIEZORD 31509
17-03-17 23:23:33.208 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:33.208 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.649 V. Piezo Error = -9.2 V.
17-03-17 23:23:33.208 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.5 um, Read 10 ADC samples: Avg = 35671 (-168.6 uncal um), Error = 0.9 uncal um, Median = 35669 (-168.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35664 (-168.6 uncal um), Max = 35679 (-168.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 23:23:33.208 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35671, posNoise = 8, negNoise = 7
17-03-17 23:23:33.208 -07 000000610 INF: Z Motor: After move to -0.169471, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:23:33.208 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 23:23:33.208 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:23:33.208 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:23:33.208 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:23:33.208 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:23:33.208 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:23:33.208 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:23:33.208 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:23:33.208 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:23:33.208 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:23:33.208 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:23:33.208 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:23:33.208 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:23:33.218 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 23:23:33.218 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:23:33.218 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 23:23:33.218 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:23:33.228 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 23:23:33.228 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 23:23:33.228 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 23:23:33.228 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 23:23:33.228 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 474 474 228 228 37198 150\n [Camera]
17-03-17 23:23:33.428 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:23:33.898 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 666
17-03-17 23:23:33.898 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 666
17-03-17 23:23:33.908 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:23:33.908 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:23:33.908 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2216660184, 0x0, 391868352) start.
17-03-17 23:23:33.908 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 666
17-03-17 23:23:33.908 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 666
17-03-17 23:23:33.908 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:23:33.908 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:23:33.908 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 23:23:34.098 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37198 859
17-03-17 23:23:34.248 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1011
17-03-17 23:23:34.298 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2216660184, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 23:23:34.298 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 23:23:34.298 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:23:34.308 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 23:23:34.308 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 23:23:34.308 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:23:34.308 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:23:34.308 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 23:23:34.308 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:23:34.318 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 23:23:34.478 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1237
17-03-17 23:23:34.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1237
17-03-17 23:23:34.478 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:23:34.478 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:23:34.478 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 23:23:34.478 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1237
17-03-17 23:23:34.478 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1237
17-03-17 23:23:34.478 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:23:34.478 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:23:34.478 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 23:23:34.778 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP 1429
17-03-17 23:23:34.778 -07 000000551 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:23:34.778 -07 000000610 INF: FPGA: 'CAMDBLSNAP 474 474 228 228 37198 150' command took 2 ms to send, 1543 ms to get response, and 1548 ms overall
17-03-17 23:23:34.778 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:23:34.778 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87890625, Z-Position -0.16948142331989. ------
17-03-17 23:23:34.778 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:23:34.778 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17604 mm
17-03-17 23:23:34.778 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:23:34.788 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 23:23:34.788 -07 000000382 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm
17-03-17 23:23:34.788 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:23:34.788 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 23:23:34.788 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:23:34.788 -07 000000501 INF: Z Motor: Entering MoveAbsStepped (DAC = 38455, sync = True, waitForSettling = False)
17-03-17 23:23:34.788 -07 000000501 INF: Z Motor: Moving to -0.176036 mm, started at -0.169481 mm, distance = -6.55 um
17-03-17 23:23:34.788 -07 000000623 INF: FPGA: Recv YRDPOS 132872
17-03-17 23:23:34.798 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:23:34.798 -07 000000382 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:23:34.798 -07 000000382 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:23:34.798 -07 000000382 INF: Y Motor: Moving 1350 steps-28
17-03-17 23:23:34.798 -07 000000486 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:23:34.808 -07 000000501 INF: FPGA: Xmit ZDACW 38455\n [Z Motor]
17-03-17 23:23:34.808 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 23:23:34.818 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:23:34.818 -07 000000501 INF: FPGA: 'ZDACW 38455' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 23:23:34.828 -07 000000501 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:23:34.828 -07 000000551 INF: FPGA: Recv ZDACR 38455
17-03-17 23:23:34.838 -07 000000501 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:23:34.838 -07 000000501 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet))
17-03-17 23:23:34.868 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 23:23:34.868 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 23:23:34.868 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:23:34.878 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 23:23:34.878 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 23:23:34.878 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:23:34.878 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:23:34.878 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 23:23:34.878 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 23:23:34.878 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 23:23:34.998 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:23:34.998 -07 000000486 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 210 ms overall
17-03-17 23:23:35.198 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-17 23:23:35.198 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 399 ms overall
17-03-17 23:23:35.238 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:23:35.238 -07 000000593 INF: FPGA: Recv YRDPOS 134582
17-03-17 23:23:35.248 -07 000000382 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:23:35.248 -07 000000382 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:23:35.248 -07 000000382 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 23:23:35.248 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.844 mm, average velocity = 2.109 mm/sec
17-03-17 23:23:36.198 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:23:36.198 -07 000000593 INF: FPGA: Recv YRDPOS 134582
17-03-17 23:23:36.208 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:23:36.208 -07 000000382 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:23:36.238 -07 000000382 INF: Y Motor: After move to 65.722610, error = -0.008743, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:23:36.238 -07 000000382 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:23:36.238 -07 000000382 INF: Y Motor: Moved to 65.7139 after 1448 ms (table move)
17-03-17 23:23:36.238 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176036 mm (DAC = 38455)
17-03-17 23:23:36.238 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:36.238 -07 000000480 INF: FPGA: Recv ZSGSRD 36696
17-03-17 23:23:36.248 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:23:36.248 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:36.248 -07 000000501 INF: FPGA: Recv ZSGSRD 36692
17-03-17 23:23:36.258 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:36.258 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:36.258 -07 000000593 INF: FPGA: Recv ZSGSRD 36682
17-03-17 23:23:36.268 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:36.268 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:36.268 -07 000000501 INF: FPGA: Recv ZSGSRD 36690
17-03-17 23:23:36.278 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:36.278 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:36.278 -07 000000593 INF: FPGA: Recv ZSGSRD 36690
17-03-17 23:23:36.288 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:36.288 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:36.288 -07 000000480 INF: FPGA: Recv ZSGSRD 36695
17-03-17 23:23:36.298 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:36.298 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:36.298 -07 000000593 INF: FPGA: Recv ZSGSRD 36693
17-03-17 23:23:36.308 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:36.308 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:36.308 -07 000000501 INF: FPGA: Recv ZSGSRD 36693
17-03-17 23:23:36.318 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:36.318 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:36.318 -07 000000480 INF: FPGA: Recv ZSGSRD 36689
17-03-17 23:23:36.328 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:36.328 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:36.328 -07 000000501 INF: FPGA: Recv ZSGSRD 36690
17-03-17 23:23:36.338 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:36.338 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:23:36.338 -07 000000502 INF: FPGA: Recv ZPIEZORD 32902
17-03-17 23:23:36.348 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:36.348 -07 000000462 INF: Z Motor: Piezo is near 50.3 V (nominally 0 to 100 V), expect near 58.7 V, since DAC is at 5.868 V. Piezo Error = -8.4 V.
17-03-17 23:23:36.348 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.0 um, Read 10 ADC samples: Avg = 36691 (-175.1 uncal um), Error = 0.9 uncal um, Median = 36691 (-175.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36682 (-175.1 uncal um), Max = 36696 (-175.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 23:23:36.348 -07 000000462 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36691, posNoise = 5, negNoise = 9
17-03-17 23:23:36.348 -07 000000462 INF: Z Motor: After move to -0.176036, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:23:36.348 -07 000000462 INF: Z Motor: Settle wait time = 1451 ms, measure time = 106 ms (allowed 150 ms), total time = 1557 ms
17-03-17 23:23:36.348 -07 000000462 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 23:23:36.398 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1611 ms
17-03-17 23:23:36.398 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:23:36.398 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:23:36.398 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:23:36.398 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:23:36.398 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:23:36.398 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:23:36.398 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:23:36.398 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:23:36.398 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:23:36.408 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:23:36.408 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:23:36.418 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 23:23:36.418 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 23:23:36.418 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:23:36.468 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:23:36.668 -07 000000623 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:23:36.668 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:23:36.668 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:23:36.668 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 23:23:36.708 -07 000000429 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:23:36.708 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-17 23:23:36.708 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 23:23:36.788 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 121 ms.
17-03-17 23:23:36.788 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:23:36.788 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 23:23:36.788 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 124 ms.
17-03-17 23:23:36.808 -07 000000429 INF: Autofocus start
17-03-17 23:23:36.808 -07 000000429 INF: MeasureProfile start
17-03-17 23:23:36.808 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:23:36.808 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:23:36.818 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:23:36.818 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:23:36.818 -07 000000429 INF: MeasureProfile done
17-03-17 23:23:36.818 -07 000000429 INF: X=16  Z correction [um]=0.01042744
17-03-17 23:23:36.818 -07 000000429 INF: Autofocus finished
17-03-17 23:23:37.018 -07 000000623 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:23:37.018 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-17 23:23:37.028 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.7138671875, Z-position -0.176034119704486. ----------
17-03-17 23:23:37.028 -07 000000610 INF: Cycle	75	Tile	8	Exposure Settings		A	474	G	228	T	228	C	474
17-03-17 23:23:37.028 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36970, sync = True, waitForSettling = True)
17-03-17 23:23:37.028 -07 000000610 INF: Z Motor: Moving to -0.169238 mm, started at -0.176034 mm, distance = 6.80 um
17-03-17 23:23:37.028 -07 000000610 INF: FPGA: Xmit ZDACW 36970\n [Z Motor]
17-03-17 23:23:37.028 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 23:23:37.038 -07 000000610 INF: FPGA: 'ZDACW 36970' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:23:37.038 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:23:37.038 -07 000000462 INF: FPGA: Recv ZDACR 36970
17-03-17 23:23:37.048 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:37.048 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:23:37.058 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:23:37.068 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 74. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1192, R2=1246, Total=2438. Warn if over 250 bubbles per interval.
17-03-17 23:23:37.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:37.198 -07 000000382 INF: FPGA: Recv ZSGSRD 35638
17-03-17 23:23:37.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:23:37.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:37.208 -07 000000501 INF: FPGA: Recv ZSGSRD 35633
17-03-17 23:23:37.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:37.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:37.218 -07 000000576 INF: FPGA: Recv ZSGSRD 35630
17-03-17 23:23:37.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:37.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:37.228 -07 000000462 INF: FPGA: Recv ZSGSRD 35637
17-03-17 23:23:37.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:37.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:37.248 -07 000000486 INF: FPGA: Recv ZSGSRD 35639
17-03-17 23:23:37.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:23:37.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:37.258 -07 000000462 INF: FPGA: Recv ZSGSRD 35630
17-03-17 23:23:37.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:37.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:37.268 -07 000000429 INF: FPGA: Recv ZSGSRD 35633
17-03-17 23:23:37.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:37.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:37.278 -07 000000382 INF: FPGA: Recv ZSGSRD 35631
17-03-17 23:23:37.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:37.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:37.288 -07 000000486 INF: FPGA: Recv ZSGSRD 35638
17-03-17 23:23:37.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:37.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:37.298 -07 000000462 INF: FPGA: Recv ZSGSRD 35634
17-03-17 23:23:37.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:37.308 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:23:37.308 -07 000000551 INF: FPGA: Recv ZPIEZORD 31484
17-03-17 23:23:37.318 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:37.318 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.641 V. Piezo Error = -9.2 V.
17-03-17 23:23:37.318 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.2 um, Read 10 ADC samples: Avg = 35634 (-168.4 uncal um), Error = 0.9 uncal um, Median = 35634 (-168.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35630 (-168.3 uncal um), Max = 35639 (-168.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:23:37.318 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35634, posNoise = 5, negNoise = 4
17-03-17 23:23:37.318 -07 000000610 INF: Z Motor: After move to -0.169238, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:23:37.318 -07 000000610 INF: Z Motor: MoveAbsStepped took 285 ms)
17-03-17 23:23:37.318 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:23:37.318 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:23:37.318 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:23:37.318 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:23:37.318 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:23:37.318 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:23:37.318 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:23:37.318 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:23:37.318 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:23:37.318 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:23:37.318 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:23:37.318 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:23:37.328 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 23:23:37.328 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:23:37.328 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 23:23:37.328 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:23:37.328 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 23:23:37.328 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 23:23:37.338 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 23:23:37.338 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 23:23:37.338 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 474 474 228 228 37147 150\n [Camera]
17-03-17 23:23:37.538 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:23:37.558 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 75, FrontChillerTemperature: 4.001704,
17-03-17 23:23:38.008 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 666
17-03-17 23:23:38.008 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 666
17-03-17 23:23:38.008 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:23:38.008 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 666
17-03-17 23:23:38.018 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 666
17-03-17 23:23:38.018 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:23:38.018 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:23:38.018 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) start.
17-03-17 23:23:38.018 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:23:38.018 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 23:23:38.198 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37147 859
17-03-17 23:23:38.348 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1009
17-03-17 23:23:38.388 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 594000200, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 23:23:38.388 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 23:23:38.388 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:23:38.388 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 23:23:38.388 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 23:23:38.388 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:23:38.398 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:23:38.398 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 23:23:38.398 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:23:38.408 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 23:23:38.578 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1237
17-03-17 23:23:38.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1237
17-03-17 23:23:38.578 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:23:38.588 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1237
17-03-17 23:23:38.588 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1237
17-03-17 23:23:38.588 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:23:38.708 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:23:38.708 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start.
17-03-17 23:23:38.708 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:23:38.708 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start.
17-03-17 23:23:38.768 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP 1430
17-03-17 23:23:38.768 -07 000000593 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:23:38.768 -07 000000610 INF: FPGA: 'CAMDBLSNAP 474 474 228 228 37147 150' command took 2 ms to send, 1429 ms to get response, and 1436 ms overall
17-03-17 23:23:38.778 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:23:38.778 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.7138671875, Z-Position -0.169243727470645. ------
17-03-17 23:23:38.778 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:23:38.778 -07 000000478 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17569 mm
17-03-17 23:23:38.778 -07 000000478 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:23:38.778 -07 000000433 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 23:23:38.778 -07 000000433 INF: Y Motor: Moving to 66.5526 mm, started at 65.7139 mm, delta = 0.8387 mm
17-03-17 23:23:38.778 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:23:38.778 -07 000000551 INF: Z Motor: Entering MoveAbsStepped (DAC = 38379, sync = True, waitForSettling = False)
17-03-17 23:23:38.778 -07 000000551 INF: Z Motor: Moving to -0.175688 mm, started at -0.169244 mm, distance = -6.44 um
17-03-17 23:23:38.788 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:23:38.788 -07 000000551 INF: FPGA: Xmit ZDACW 38379\n [Z Motor]
17-03-17 23:23:38.788 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 23:23:38.798 -07 000000551 INF: FPGA: 'ZDACW 38379' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 23:23:38.798 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:23:38.798 -07 000000429 INF: FPGA: Recv YRDPOS 134583
17-03-17 23:23:38.808 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:23:38.808 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 23:23:38.808 -07 000000433 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:23:38.808 -07 000000433 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:23:38.808 -07 000000433 INF: Y Motor: Moving 1341 steps-18
17-03-17 23:23:38.818 -07 000000551 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:23:38.818 -07 000000429 INF: FPGA: Recv ZDACR 38379
17-03-17 23:23:38.828 -07 000000433 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:23:38.828 -07 000000551 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:23:38.828 -07 000000551 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 23:23:39.008 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:23:39.008 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 23:23:39.088 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 23:23:39.088 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 23:23:39.088 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:23:39.098 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:23:39.098 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 23:23:39.098 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 23:23:39.098 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:23:39.098 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:23:39.098 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 517 ms.
17-03-17 23:23:39.098 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 515 ms.
17-03-17 23:23:39.198 -07 000000593 INF: FPGA: Recv YMVTILE
17-03-17 23:23:39.198 -07 000000433 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall
17-03-17 23:23:39.248 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:23:39.248 -07 000000462 INF: FPGA: Recv YRDPOS 136272
17-03-17 23:23:39.258 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:39.258 -07 000000433 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:23:39.258 -07 000000433 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 23:23:39.258 -07 000000433 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.839 mm, average velocity = 2.145 mm/sec
17-03-17 23:23:40.208 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:23:40.208 -07 000000462 INF: FPGA: Recv YRDPOS 136272
17-03-17 23:23:40.218 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:23:40.218 -07 000000433 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:23:40.238 -07 000000433 INF: Y Motor: After move to 66.552605, error = -0.013542, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:23:40.238 -07 000000433 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:23:40.238 -07 000000433 INF: Y Motor: Moved to 66.5391 after 1460 ms (table move)
17-03-17 23:23:40.248 -07 000000478 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175688 mm (DAC = 38379)
17-03-17 23:23:40.248 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:40.248 -07 000000576 INF: FPGA: Recv ZSGSRD 36641
17-03-17 23:23:40.258 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:23:40.258 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:40.258 -07 000000462 INF: FPGA: Recv ZSGSRD 36637
17-03-17 23:23:40.268 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:40.268 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:40.268 -07 000000576 INF: FPGA: Recv ZSGSRD 36644
17-03-17 23:23:40.278 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:40.278 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:40.278 -07 000000429 INF: FPGA: Recv ZSGSRD 36643
17-03-17 23:23:40.288 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:40.288 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:40.288 -07 000000486 INF: FPGA: Recv ZSGSRD 36636
17-03-17 23:23:40.298 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:40.298 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:40.298 -07 000000502 INF: FPGA: Recv ZSGSRD 36637
17-03-17 23:23:40.308 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:40.308 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:40.308 -07 000000462 INF: FPGA: Recv ZSGSRD 36627
17-03-17 23:23:40.318 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:40.318 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:40.318 -07 000000480 INF: FPGA: Recv ZSGSRD 36636
17-03-17 23:23:40.328 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:40.328 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:40.328 -07 000000501 INF: FPGA: Recv ZSGSRD 36640
17-03-17 23:23:40.338 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:40.338 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:40.338 -07 000000462 INF: FPGA: Recv ZSGSRD 36643
17-03-17 23:23:40.348 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:40.348 -07 000000478 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:23:40.348 -07 000000501 INF: FPGA: Recv ZPIEZORD 32862
17-03-17 23:23:40.358 -07 000000478 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:40.358 -07 000000478 INF: Z Motor: Piezo is near 50.2 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.856 V. Piezo Error = -8.4 V.
17-03-17 23:23:40.358 -07 000000478 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.7 um, Read 10 ADC samples: Avg = 36638 (-174.8 uncal um), Error = 0.9 uncal um, Median = 36638 (-174.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36627 (-174.7 uncal um), Max = 36644 (-174.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 23:23:40.358 -07 000000478 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36638, posNoise = 6, negNoise = 11
17-03-17 23:23:40.358 -07 000000478 INF: Z Motor: After move to -0.175688, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:23:40.358 -07 000000478 INF: Z Motor: Settle wait time = 1464 ms, measure time = 108 ms (allowed 150 ms), total time = 1572 ms
17-03-17 23:23:40.358 -07 000000478 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 23:23:40.408 -07 000000478 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1625 ms
17-03-17 23:23:40.408 -07 000000478 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:23:40.418 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:23:40.418 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:23:40.418 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:23:40.428 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:23:40.428 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:23:40.428 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:23:40.428 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:23:40.428 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:23:40.428 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:23:40.428 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:23:40.438 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-17 23:23:40.438 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 23:23:40.438 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:23:40.488 -07 000000551 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:23:40.688 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:23:40.688 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:23:40.688 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:23:40.688 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 606469960, 0x0, 559484976) start.
17-03-17 23:23:40.728 -07 000000475 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:23:40.728 -07 000000462 INF: FPGA: Recv CAMSNAP
17-03-17 23:23:40.728 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 284 ms to get response, and 287 ms overall
17-03-17 23:23:40.808 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 606469960, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 23:23:40.808 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:23:40.808 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 23:23:40.808 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 23:23:40.828 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:23:40.828 -07 000000475 INF: Autofocus start
17-03-17 23:23:40.828 -07 000000475 INF: MeasureProfile start
17-03-17 23:23:40.838 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:23:40.838 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:23:40.838 -07 000000429 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:23:40.848 -07 000000475 INF: MeasureProfile done
17-03-17 23:23:40.848 -07 000000475 INF: X=16  Z correction [um]=0.01042744
17-03-17 23:23:40.848 -07 000000475 INF: Autofocus finished
17-03-17 23:23:41.038 -07 000000486 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:23:41.038 -07 000000429 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:23:41.038 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5390625, Z-position -0.175693636460973. ----------
17-03-17 23:23:41.048 -07 000000610 INF: Cycle	75	Tile	9	Exposure Settings		A	474	G	228	T	228	C	474
17-03-17 23:23:41.048 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36894, sync = True, waitForSettling = True)
17-03-17 23:23:41.048 -07 000000610 INF: Z Motor: Moving to -0.168890 mm, started at -0.175694 mm, distance = 6.80 um
17-03-17 23:23:41.048 -07 000000610 INF: FPGA: Xmit ZDACW 36894\n [Z Motor]
17-03-17 23:23:41.048 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 23:23:41.058 -07 000000610 INF: FPGA: 'ZDACW 36894' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:23:41.058 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:23:41.058 -07 000000478 INF: FPGA: Recv ZDACR 36894
17-03-17 23:23:41.068 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:41.068 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:23:41.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:41.218 -07 000000462 INF: FPGA: Recv ZSGSRD 35588
17-03-17 23:23:41.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:23:41.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:41.228 -07 000000593 INF: FPGA: Recv ZSGSRD 35577
17-03-17 23:23:41.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:41.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:41.238 -07 000000486 INF: FPGA: Recv ZSGSRD 35584
17-03-17 23:23:41.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:41.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:41.248 -07 000000576 INF: FPGA: Recv ZSGSRD 35580
17-03-17 23:23:41.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:41.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:41.258 -07 000000462 INF: FPGA: Recv ZSGSRD 35583
17-03-17 23:23:41.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:41.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:41.268 -07 000000593 INF: FPGA: Recv ZSGSRD 35583
17-03-17 23:23:41.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:41.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:41.278 -07 000000433 INF: FPGA: Recv ZSGSRD 35577
17-03-17 23:23:41.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:41.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:41.288 -07 000000576 INF: FPGA: Recv ZSGSRD 35582
17-03-17 23:23:41.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:41.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:41.298 -07 000000462 INF: FPGA: Recv ZSGSRD 35579
17-03-17 23:23:41.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:41.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:41.308 -07 000000480 INF: FPGA: Recv ZSGSRD 35579
17-03-17 23:23:41.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:41.318 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:23:41.318 -07 000000429 INF: FPGA: Recv ZPIEZORD 31418
17-03-17 23:23:41.328 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:41.328 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.630 V. Piezo Error = -9.2 V.
17-03-17 23:23:41.328 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.9 um, Read 10 ADC samples: Avg = 35581 (-168.0 uncal um), Error = 0.9 uncal um, Median = 35581 (-168.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35577 (-168.0 uncal um), Max = 35588 (-168.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:23:41.328 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35581, posNoise = 7, negNoise = 4
17-03-17 23:23:41.328 -07 000000610 INF: Z Motor: After move to -0.168890, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:23:41.328 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 23:23:41.328 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:23:41.328 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:23:41.328 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:23:41.328 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:23:41.328 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:23:41.328 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:23:41.328 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:23:41.328 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:23:41.328 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:23:41.328 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:23:41.328 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:23:41.328 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:23:41.338 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:23:41.338 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:23:41.338 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:23:41.338 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:23:41.348 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 23:23:41.348 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:23:41.348 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 23:23:41.348 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 23:23:41.348 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 474 474 228 228 37070 150\n [Camera]
17-03-17 23:23:41.548 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:23:42.018 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 666
17-03-17 23:23:42.018 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 666
17-03-17 23:23:42.028 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:23:42.028 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 666
17-03-17 23:23:42.028 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 666
17-03-17 23:23:42.028 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:23:42.028 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:23:42.028 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 23:23:42.028 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:23:42.038 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 23:23:42.058 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:23:42.068 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 74. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1192, R2=1246, Total=2438. Warn if over 250 bubbles per interval.
17-03-17 23:23:42.218 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37070 859
17-03-17 23:23:42.368 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1009
17-03-17 23:23:42.418 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 23:23:42.418 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 23:23:42.418 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:23:42.428 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:23:42.428 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 23:23:42.428 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 23:23:42.428 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 23:23:42.428 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:23:42.428 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:23:42.438 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms.
17-03-17 23:23:42.598 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1237
17-03-17 23:23:42.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1237
17-03-17 23:23:42.598 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:23:42.598 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1237
17-03-17 23:23:42.598 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1237
17-03-17 23:23:42.598 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:23:42.598 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:23:42.598 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 23:23:42.608 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:23:42.608 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2164362856, 0x0, 418435064) start.
17-03-17 23:23:42.788 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP 1430
17-03-17 23:23:42.788 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:23:42.788 -07 000000610 INF: FPGA: 'CAMDBLSNAP 474 474 228 228 37070 150' command took 2 ms to send, 1432 ms to get response, and 1437 ms overall
17-03-17 23:23:42.788 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:23:42.788 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5390625, Z-Position -0.168903244227132. ------
17-03-17 23:23:42.788 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:23:42.788 -07 000000486 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17576 mm
17-03-17 23:23:42.788 -07 000000486 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:23:42.798 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:23:42.798 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:23:42.798 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:23:42.798 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 23:23:42.798 -07 000000480 INF: Y Motor: Moving to 67.3826 mm, started at 66.5391 mm, delta = 0.8435 mm
17-03-17 23:23:42.798 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 38394, sync = True, waitForSettling = False)
17-03-17 23:23:42.798 -07 000000576 INF: Z Motor: Moving to -0.175756 mm, started at -0.168903 mm, distance = -6.85 um
17-03-17 23:23:42.808 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:23:42.808 -07 000000429 INF: FPGA: Recv YRDPOS 136272
17-03-17 23:23:42.818 -07 000000576 INF: FPGA: Xmit ZDACW 38394\n [Z Motor]
17-03-17 23:23:42.818 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 23:23:42.818 -07 000000480 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:23:42.818 -07 000000480 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:23:42.818 -07 000000480 INF: Y Motor: Moving 1350 steps-28
17-03-17 23:23:42.818 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 23:23:42.828 -07 000000576 INF: FPGA: 'ZDACW 38394' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 23:23:42.828 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:23:42.828 -07 000000502 INF: FPGA: Recv ZDACR 38394
17-03-17 23:23:42.838 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:42.838 -07 000000576 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-17 23:23:42.838 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:23:42.918 -07 000000478 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 75, FrontChillerTemperature: 4.008536,
17-03-17 23:23:42.998 -07 000000576 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:23:42.998 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall
17-03-17 23:23:42.998 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 23:23:42.998 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 23:23:42.998 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:23:42.998 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2164362856, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 23:23:42.998 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 23:23:42.998 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:23:43.008 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:23:43.008 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms.
17-03-17 23:23:43.008 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:23:43.008 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 23:23:43.208 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 23:23:43.208 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-17 23:23:43.278 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:23:43.278 -07 000000478 INF: FPGA: Recv YRDPOS 137978
17-03-17 23:23:43.288 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 23:23:43.288 -07 000000480 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:23:43.288 -07 000000480 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-17 23:23:43.288 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.844 mm, average velocity = 2.119 mm/sec
17-03-17 23:23:44.238 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:23:44.238 -07 000000593 INF: FPGA: Recv YRDPOS 137978
17-03-17 23:23:44.248 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:23:44.248 -07 000000480 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:23:44.268 -07 000000480 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:23:44.268 -07 000000480 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:23:44.268 -07 000000480 INF: Y Motor: Moved to 67.3721 after 1473 ms (table move)
17-03-17 23:23:44.278 -07 000000486 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175756 mm (DAC = 38394)
17-03-17 23:23:44.278 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:44.278 -07 000000382 INF: FPGA: Recv ZSGSRD 36659
17-03-17 23:23:44.288 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:23:44.288 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:44.288 -07 000000480 INF: FPGA: Recv ZSGSRD 36652
17-03-17 23:23:44.298 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:44.298 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:44.298 -07 000000382 INF: FPGA: Recv ZSGSRD 36645
17-03-17 23:23:44.308 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:44.308 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:44.308 -07 000000576 INF: FPGA: Recv ZSGSRD 36646
17-03-17 23:23:44.318 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:44.318 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:44.318 -07 000000502 INF: FPGA: Recv ZSGSRD 36648
17-03-17 23:23:44.328 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:44.328 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:44.328 -07 000000382 INF: FPGA: Recv ZSGSRD 36647
17-03-17 23:23:44.338 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:44.338 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:44.338 -07 000000502 INF: FPGA: Recv ZSGSRD 36647
17-03-17 23:23:44.348 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:44.348 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:44.348 -07 000000551 INF: FPGA: Recv ZSGSRD 36651
17-03-17 23:23:44.358 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:44.358 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:44.358 -07 000000502 INF: FPGA: Recv ZSGSRD 36650
17-03-17 23:23:44.368 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:44.368 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:44.368 -07 000000576 INF: FPGA: Recv ZSGSRD 36655
17-03-17 23:23:44.378 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:44.378 -07 000000486 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:23:44.378 -07 000000502 INF: FPGA: Recv ZPIEZORD 32822
17-03-17 23:23:44.388 -07 000000486 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:44.388 -07 000000486 INF: Z Motor: Piezo is near 50.1 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.859 V. Piezo Error = -8.5 V.
17-03-17 23:23:44.388 -07 000000486 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.8 um, Read 10 ADC samples: Avg = 36650 (-174.9 uncal um), Error = 0.9 uncal um, Median = 36649 (-174.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36645 (-174.9 uncal um), Max = 36659 (-174.9 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:23:44.388 -07 000000486 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36650, posNoise = 9, negNoise = 5
17-03-17 23:23:44.388 -07 000000486 INF: Z Motor: After move to -0.175756, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:23:44.388 -07 000000486 INF: Z Motor: Settle wait time = 1476 ms, measure time = 111 ms (allowed 150 ms), total time = 1587 ms
17-03-17 23:23:44.388 -07 000000486 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 23:23:44.428 -07 000000486 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1632 ms
17-03-17 23:23:44.428 -07 000000486 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:23:44.428 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:23:44.428 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:23:44.428 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:23:44.428 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:23:44.428 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:23:44.428 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:23:44.428 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:23:44.428 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:23:44.438 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 23:23:44.438 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:23:44.448 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 23:23:44.448 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 23:23:44.448 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:23:44.498 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:23:44.698 -07 000000593 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:23:44.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:23:44.698 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:23:44.698 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start.
17-03-17 23:23:44.738 -07 000000480 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:23:44.738 -07 000000623 INF: FPGA: Recv CAMSNAP
17-03-17 23:23:44.738 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 273 ms to get response, and 285 ms overall
17-03-17 23:23:44.818 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 122 ms.
17-03-17 23:23:44.818 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:23:44.828 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 23:23:44.828 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 125 ms.
17-03-17 23:23:44.838 -07 000000478 INF: Autofocus start
17-03-17 23:23:44.838 -07 000000478 INF: MeasureProfile start
17-03-17 23:23:44.838 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:23:44.838 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:23:44.848 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:23:44.848 -07 000000593 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:23:44.848 -07 000000478 INF: MeasureProfile done
17-03-17 23:23:44.848 -07 000000478 INF: X=0  Z correction [um]=-0.0713522
17-03-17 23:23:44.848 -07 000000478 INF: Autofocus finished
17-03-17 23:23:45.048 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:23:45.048 -07 000000593 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-17 23:23:45.048 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.175770727006674. ----------
17-03-17 23:23:45.048 -07 000000610 INF: Cycle	75	Tile	10	Exposure Settings		A	474	G	228	T	228	C	474
17-03-17 23:23:45.058 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36891, sync = True, waitForSettling = True)
17-03-17 23:23:45.058 -07 000000610 INF: Z Motor: Moving to -0.168876 mm, started at -0.175771 mm, distance = 6.89 um
17-03-17 23:23:45.058 -07 000000610 INF: FPGA: Xmit ZDACW 36891\n [Z Motor]
17-03-17 23:23:45.058 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 23:23:45.068 -07 000000610 INF: FPGA: 'ZDACW 36891' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:23:45.068 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:23:45.068 -07 000000551 INF: FPGA: Recv ZDACR 36891
17-03-17 23:23:45.078 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:45.078 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:23:45.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:45.228 -07 000000475 INF: FPGA: Recv ZSGSRD 35579
17-03-17 23:23:45.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:23:45.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:45.238 -07 000000480 INF: FPGA: Recv ZSGSRD 35575
17-03-17 23:23:45.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:45.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:45.248 -07 000000462 INF: FPGA: Recv ZSGSRD 35575
17-03-17 23:23:45.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:45.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:45.258 -07 000000429 INF: FPGA: Recv ZSGSRD 35571
17-03-17 23:23:45.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:45.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:45.268 -07 000000502 INF: FPGA: Recv ZSGSRD 35579
17-03-17 23:23:45.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:45.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:45.278 -07 000000478 INF: FPGA: Recv ZSGSRD 35576
17-03-17 23:23:45.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:45.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:45.288 -07 000000462 INF: FPGA: Recv ZSGSRD 35578
17-03-17 23:23:45.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:45.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:45.298 -07 000000486 INF: FPGA: Recv ZSGSRD 35579
17-03-17 23:23:45.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:45.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:45.308 -07 000000576 INF: FPGA: Recv ZSGSRD 35574
17-03-17 23:23:45.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:23:45.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:45.318 -07 000000551 INF: FPGA: Recv ZSGSRD 35581
17-03-17 23:23:45.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:45.328 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:23:45.328 -07 000000433 INF: FPGA: Recv ZPIEZORD 31406
17-03-17 23:23:45.338 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:45.338 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.629 V. Piezo Error = -9.2 V.
17-03-17 23:23:45.338 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.9 um, Read 10 ADC samples: Avg = 35577 (-168.0 uncal um), Error = 0.9 uncal um, Median = 35577 (-168.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35571 (-168.0 uncal um), Max = 35581 (-168.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:23:45.338 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35577, posNoise = 4, negNoise = 6
17-03-17 23:23:45.338 -07 000000610 INF: Z Motor: After move to -0.168876, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:23:45.338 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 23:23:45.338 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:23:45.338 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:23:45.338 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:23:45.338 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:23:45.338 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:23:45.338 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:23:45.338 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:23:45.338 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:23:45.338 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:23:45.338 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:23:45.338 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:23:45.338 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:23:45.338 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:23:45.338 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:23:45.348 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:23:45.348 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:23:45.348 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 23:23:45.348 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 23:23:45.348 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 23:23:45.348 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 23:23:45.358 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 474 474 228 228 37068 150\n [Camera]
17-03-17 23:23:45.558 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:23:46.028 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 666
17-03-17 23:23:46.028 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 666
17-03-17 23:23:46.028 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:23:46.028 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:23:46.028 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 644204472, 0x0, 391868352) start.
17-03-17 23:23:46.038 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 666
17-03-17 23:23:46.038 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 666
17-03-17 23:23:46.038 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:23:46.038 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:23:46.038 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-17 23:23:46.228 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37068 860
17-03-17 23:23:46.378 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1009
17-03-17 23:23:46.408 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 644204472, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 23:23:46.408 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 23:23:46.408 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:23:46.408 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 23:23:46.408 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 23:23:46.408 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:23:46.418 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 23:23:46.418 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 23:23:46.418 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 23:23:46.428 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 23:23:46.598 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1237
17-03-17 23:23:46.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1237
17-03-17 23:23:46.608 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:23:46.718 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1237
17-03-17 23:23:46.718 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1237
17-03-17 23:23:46.718 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:23:46.718 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:23:46.718 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2216660184, 0x0, 391868352) start.
17-03-17 23:23:46.718 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:23:46.718 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 23:23:46.798 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP 1430
17-03-17 23:23:46.798 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:23:46.798 -07 000000610 INF: FPGA: 'CAMDBLSNAP 474 474 228 228 37068 150' command took 2 ms to send, 1431 ms to get response, and 1437 ms overall
17-03-17 23:23:46.798 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:23:46.798 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.3720703125, Z-Position -0.168877547378565. ------
17-03-17 23:23:46.808 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:23:46.808 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17521 mm
17-03-17 23:23:46.808 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:23:46.808 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:23:46.808 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 23:23:46.808 -07 000000623 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm
17-03-17 23:23:46.808 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 38274, sync = True, waitForSettling = False)
17-03-17 23:23:46.808 -07 000000382 INF: Z Motor: Moving to -0.175207 mm, started at -0.168878 mm, distance = -6.33 um
17-03-17 23:23:46.818 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:46.818 -07 000000382 INF: FPGA: Xmit ZDACW 38274\n [Z Motor]
17-03-17 23:23:46.818 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 23:23:46.828 -07 000000382 INF: FPGA: 'ZDACW 38274' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:23:46.828 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:23:46.828 -07 000000475 INF: FPGA: Recv YRDPOS 137978
17-03-17 23:23:46.838 -07 000000486 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:23:46.838 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 23:23:46.838 -07 000000623 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:23:46.838 -07 000000623 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:23:46.838 -07 000000623 INF: Y Motor: Moving 1345 steps-22
17-03-17 23:23:46.848 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:23:46.848 -07 000000478 INF: FPGA: Recv ZDACR 38274
17-03-17 23:23:46.858 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:23:46.858 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:23:46.858 -07 000000382 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-17 23:23:47.038 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:23:47.038 -07 000000486 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 23:23:47.068 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:23:47.068 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 74. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1192, R2=1246, Total=2438. Warn if over 250 bubbles per interval.
17-03-17 23:23:47.098 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 23:23:47.098 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 23:23:47.098 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:23:47.108 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2216660184, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 23:23:47.108 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 23:23:47.108 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:23:47.108 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:23:47.108 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:23:47.108 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 505 ms.
17-03-17 23:23:47.118 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 23:23:47.228 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-17 23:23:47.228 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 23:23:47.268 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:23:47.278 -07 000000551 INF: FPGA: Recv YRDPOS 139683
17-03-17 23:23:47.288 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:23:47.288 -07 000000623 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:23:47.288 -07 000000623 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm)
17-03-17 23:23:47.288 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.841 mm, average velocity = 2.117 mm/sec
17-03-17 23:23:48.238 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:23:48.238 -07 000000480 INF: FPGA: Recv YRDPOS 139684
17-03-17 23:23:48.248 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:23:48.248 -07 000000623 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:23:48.268 -07 000000623 INF: Y Motor: After move to 68.212608, error = -0.007530, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:23:48.268 -07 000000623 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 23:23:48.268 -07 000000623 INF: Y Motor: Moved to 68.2051 after 1457 ms (table move)
17-03-17 23:23:48.268 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175207 mm (DAC = 38274)
17-03-17 23:23:48.268 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:48.278 -07 000000462 INF: FPGA: Recv ZSGSRD 36574
17-03-17 23:23:48.278 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 23:23:48.298 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:48.298 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 75, FrontChillerTemperature: 3.996267,
17-03-17 23:23:48.298 -07 000000623 INF: FPGA: Recv ZSGSRD 36559
17-03-17 23:23:48.308 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 23:23:48.318 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:48.318 -07 000000480 INF: FPGA: Recv ZSGSRD 36565
17-03-17 23:23:48.328 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:23:48.348 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:48.348 -07 000000433 INF: FPGA: Recv ZSGSRD 36569
17-03-17 23:23:48.358 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:23:48.358 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:48.358 -07 000000462 INF: FPGA: Recv ZSGSRD 36569
17-03-17 23:23:48.368 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:48.378 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:48.378 -07 000000482 INF: FPGA: Recv ZSGSRD 36566
17-03-17 23:23:48.388 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:23:48.388 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:48.388 -07 000000551 INF: FPGA: Recv ZSGSRD 36575
17-03-17 23:23:48.398 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:48.398 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:48.398 -07 000000501 INF: FPGA: Recv ZSGSRD 36565
17-03-17 23:23:48.408 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:48.408 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:48.408 -07 000000462 INF: FPGA: Recv ZSGSRD 36558
17-03-17 23:23:48.418 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:48.418 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:48.418 -07 000000482 INF: FPGA: Recv ZSGSRD 36561
17-03-17 23:23:48.428 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:48.428 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:23:48.428 -07 000000478 INF: FPGA: Recv ZPIEZORD 32759
17-03-17 23:23:48.438 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:48.438 -07 000000576 INF: Z Motor: Piezo is near 50.0 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.840 V. Piezo Error = -8.4 V.
17-03-17 23:23:48.438 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.2 um, Read 10 ADC samples: Avg = 36566 (-174.3 uncal um), Error = 0.9 uncal um, Median = 36566 (-174.3 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36558 (-174.3 uncal um), Max = 36575 (-174.4 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 23:23:48.438 -07 000000576 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36566, posNoise = 9, negNoise = 8
17-03-17 23:23:48.438 -07 000000576 INF: Z Motor: After move to -0.175207, error = -0.000024, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:23:48.438 -07 000000576 INF: Z Motor: Settle wait time = 1459 ms, measure time = 162 ms (allowed 150 ms), total time = 1621 ms
17-03-17 23:23:48.438 -07 000000576 INF: Z Motor: Warning: Actual position measuring time = 162 ms, longer than max expected time of 150 ms
17-03-17 23:23:48.438 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1627 ms
17-03-17 23:23:48.438 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:23:48.438 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:23:48.438 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:23:48.438 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:23:48.438 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:23:48.438 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:23:48.438 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:23:48.438 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:23:48.448 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:23:48.448 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 23:23:48.448 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:23:48.458 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 23:23:48.458 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 23:23:48.458 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:23:48.498 -07 000000475 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:23:48.698 -07 000000501 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:23:48.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:23:48.698 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:23:48.698 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1113297000, 0x0, 559484976) start.
17-03-17 23:23:48.738 -07 000000475 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:23:48.738 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-17 23:23:48.738 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 23:23:48.818 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1113297000, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 23:23:48.818 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:23:48.818 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:23:48.818 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-17 23:23:48.838 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:23:48.838 -07 000000593 INF: Autofocus start
17-03-17 23:23:48.838 -07 000000593 INF: MeasureProfile start
17-03-17 23:23:48.838 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:23:48.848 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:23:48.848 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:23:48.848 -07 000000593 INF: MeasureProfile done
17-03-17 23:23:48.848 -07 000000593 INF: X=32  Z correction [um]=0.09220707
17-03-17 23:23:48.848 -07 000000593 INF: Autofocus finished
17-03-17 23:23:49.048 -07 000000623 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:23:49.048 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 204 ms overall
17-03-17 23:23:49.048 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.205078125, Z-position -0.175231093186766. ----------
17-03-17 23:23:49.058 -07 000000610 INF: Cycle	75	Tile	11	Exposure Settings		A	474	G	228	T	228	C	474
17-03-17 23:23:49.058 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36807, sync = True, waitForSettling = True)
17-03-17 23:23:49.058 -07 000000610 INF: Z Motor: Moving to -0.168492 mm, started at -0.175231 mm, distance = 6.74 um
17-03-17 23:23:49.058 -07 000000610 INF: FPGA: Xmit ZDACW 36807\n [Z Motor]
17-03-17 23:23:49.058 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 23:23:49.068 -07 000000610 INF: FPGA: 'ZDACW 36807' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:23:49.068 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:23:49.068 -07 000000576 INF: FPGA: Recv ZDACR 36807
17-03-17 23:23:49.078 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:49.078 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:23:49.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:49.228 -07 000000475 INF: FPGA: Recv ZSGSRD 35518
17-03-17 23:23:49.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:23:49.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:49.238 -07 000000382 INF: FPGA: Recv ZSGSRD 35523
17-03-17 23:23:49.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:49.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:49.248 -07 000000551 INF: FPGA: Recv ZSGSRD 35511
17-03-17 23:23:49.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:49.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:49.258 -07 000000433 INF: FPGA: Recv ZSGSRD 35512
17-03-17 23:23:49.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:49.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:49.268 -07 000000576 INF: FPGA: Recv ZSGSRD 35523
17-03-17 23:23:49.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:49.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:49.278 -07 000000593 INF: FPGA: Recv ZSGSRD 35523
17-03-17 23:23:49.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:49.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:49.288 -07 000000475 INF: FPGA: Recv ZSGSRD 35522
17-03-17 23:23:49.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:49.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:49.298 -07 000000433 INF: FPGA: Recv ZSGSRD 35509
17-03-17 23:23:49.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:49.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:49.308 -07 000000478 INF: FPGA: Recv ZSGSRD 35519
17-03-17 23:23:49.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:49.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:49.318 -07 000000576 INF: FPGA: Recv ZSGSRD 35526
17-03-17 23:23:49.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:49.328 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:23:49.328 -07 000000501 INF: FPGA: Recv ZPIEZORD 31341
17-03-17 23:23:49.338 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:49.338 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.616 V. Piezo Error = -9.2 V.
17-03-17 23:23:49.338 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.5 um, Read 10 ADC samples: Avg = 35519 (-167.6 uncal um), Error = 0.9 uncal um, Median = 35520 (-167.6 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 35509 (-167.6 uncal um), Max = 35526 (-167.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 23:23:49.338 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35519, posNoise = 7, negNoise = 10
17-03-17 23:23:49.338 -07 000000610 INF: Z Motor: After move to -0.168492, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:23:49.338 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms)
17-03-17 23:23:49.338 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:23:49.338 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:23:49.338 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:23:49.338 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:23:49.338 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:23:49.338 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:23:49.338 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:23:49.338 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:23:49.338 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 23:23:49.338 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:23:49.338 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 23:23:49.338 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:23:49.348 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:23:49.348 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:23:49.348 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:23:49.348 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:23:49.358 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 23:23:49.358 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:23:49.358 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 23:23:49.358 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 23:23:49.358 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 474 474 228 228 36983 150\n [Camera]
17-03-17 23:23:49.558 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:23:50.028 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 666
17-03-17 23:23:50.028 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 666
17-03-17 23:23:50.028 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:23:50.038 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 666
17-03-17 23:23:50.038 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 666
17-03-17 23:23:50.038 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:23:50.038 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:23:50.038 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1132378384, 0x0, 391868352) start.
17-03-17 23:23:50.038 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:23:50.038 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 23:23:50.228 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36983 861
17-03-17 23:23:50.378 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1009
17-03-17 23:23:50.428 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1132378384, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 23:23:50.428 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 23:23:50.428 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:23:50.428 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:23:50.428 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 23:23:50.428 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 390 ms.
17-03-17 23:23:50.428 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 23:23:50.428 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:23:50.438 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:23:50.438 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 23:23:50.598 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1237
17-03-17 23:23:50.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1237
17-03-17 23:23:50.598 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:23:50.608 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1237
17-03-17 23:23:50.608 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1237
17-03-17 23:23:50.608 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:23:50.608 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:23:50.608 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 23:23:50.608 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:23:50.608 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 23:23:50.788 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP 1430
17-03-17 23:23:50.798 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:23:50.798 -07 000000610 INF: FPGA: 'CAMDBLSNAP 474 474 228 228 36983 150' command took 2 ms to send, 1430 ms to get response, and 1436 ms overall
17-03-17 23:23:50.798 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:23:50.798 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.205078125, Z-Position -0.168504943074342. ------
17-03-17 23:23:50.798 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:23:50.798 -07 000000486 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17507 mm
17-03-17 23:23:50.798 -07 000000486 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:23:50.808 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:23:50.808 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 4 ms overall
17-03-17 23:23:50.808 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:23:50.808 -07 000000482 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 23:23:50.808 -07 000000482 INF: Y Motor: Moving to 69.0426 mm, started at 68.2051 mm, delta = 0.8375 mm
17-03-17 23:23:50.808 -07 000000433 INF: Z Motor: Entering MoveAbsStepped (DAC = 38245, sync = True, waitForSettling = False)
17-03-17 23:23:50.808 -07 000000433 INF: Z Motor: Moving to -0.175074 mm, started at -0.168505 mm, distance = -6.57 um
17-03-17 23:23:50.818 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:23:50.818 -07 000000501 INF: FPGA: Recv YRDPOS 139684
17-03-17 23:23:50.828 -07 000000433 INF: FPGA: Xmit ZDACW 38245\n [Z Motor]
17-03-17 23:23:50.828 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 23:23:50.828 -07 000000482 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:23:50.828 -07 000000482 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:23:50.828 -07 000000482 INF: Y Motor: Moving 1340 steps-16
17-03-17 23:23:50.828 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 23:23:50.838 -07 000000433 INF: FPGA: 'ZDACW 38245' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 23:23:50.838 -07 000000433 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:23:50.838 -07 000000462 INF: FPGA: Recv ZDACR 38245
17-03-17 23:23:50.848 -07 000000482 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:23:50.848 -07 000000433 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:23:50.848 -07 000000433 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-17 23:23:51.008 -07 000000429 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:23:51.008 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall
17-03-17 23:23:51.018 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 23:23:51.018 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 23:23:51.018 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:23:51.018 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 23:23:51.018 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 23:23:51.018 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:23:51.018 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:23:51.018 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:23:51.018 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 416 ms.
17-03-17 23:23:51.028 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 419 ms.
17-03-17 23:23:51.228 -07 000000593 INF: FPGA: Recv YMVTILE
17-03-17 23:23:51.228 -07 000000482 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 400 ms overall
17-03-17 23:23:51.268 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:23:51.268 -07 000000502 INF: FPGA: Recv YRDPOS 141368
17-03-17 23:23:51.278 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:23:51.278 -07 000000482 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:23:51.278 -07 000000482 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 23:23:51.278 -07 000000482 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.838 mm, average velocity = 2.094 mm/sec
17-03-17 23:23:52.068 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:23:52.068 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 74. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1192, R2=1246, Total=2438. Warn if over 250 bubbles per interval.
17-03-17 23:23:52.228 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:23:52.228 -07 000000480 INF: FPGA: Recv YRDPOS 141368
17-03-17 23:23:52.238 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:23:52.238 -07 000000482 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:23:52.258 -07 000000482 INF: Y Motor: After move to 69.042610, error = -0.015266, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:23:52.258 -07 000000482 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:23:52.258 -07 000000482 INF: Y Motor: Moved to 69.0273 after 1451 ms (table move)
17-03-17 23:23:52.258 -07 000000486 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175074 mm (DAC = 38245)
17-03-17 23:23:52.258 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:52.268 -07 000000623 INF: FPGA: Recv ZSGSRD 36542
17-03-17 23:23:52.268 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 23:23:52.268 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:52.268 -07 000000593 INF: FPGA: Recv ZSGSRD 36544
17-03-17 23:23:52.278 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:23:52.278 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:52.278 -07 000000551 INF: FPGA: Recv ZSGSRD 36541
17-03-17 23:23:52.288 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:52.288 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:52.288 -07 000000501 INF: FPGA: Recv ZSGSRD 36539
17-03-17 23:23:52.298 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:52.298 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:52.298 -07 000000482 INF: FPGA: Recv ZSGSRD 36539
17-03-17 23:23:52.308 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:52.308 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:52.308 -07 000000462 INF: FPGA: Recv ZSGSRD 36544
17-03-17 23:23:52.318 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:52.318 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:52.318 -07 000000502 INF: FPGA: Recv ZSGSRD 36548
17-03-17 23:23:52.328 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:52.328 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:52.328 -07 000000433 INF: FPGA: Recv ZSGSRD 36551
17-03-17 23:23:52.338 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:52.338 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:52.338 -07 000000482 INF: FPGA: Recv ZSGSRD 36544
17-03-17 23:23:52.348 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:52.348 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:52.348 -07 000000576 INF: FPGA: Recv ZSGSRD 36536
17-03-17 23:23:52.358 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:52.358 -07 000000486 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:23:52.358 -07 000000502 INF: FPGA: Recv ZPIEZORD 32739
17-03-17 23:23:52.368 -07 000000486 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:52.368 -07 000000486 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.836 V. Piezo Error = -8.4 V.
17-03-17 23:23:52.368 -07 000000486 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.1 um, Read 10 ADC samples: Avg = 36543 (-174.2 uncal um), Error = 0.9 uncal um, Median = 36543 (-174.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36536 (-174.2 uncal um), Max = 36551 (-174.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 23:23:52.368 -07 000000486 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36543, posNoise = 8, negNoise = 7
17-03-17 23:23:52.368 -07 000000486 INF: Z Motor: After move to -0.175074, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:23:52.368 -07 000000486 INF: Z Motor: Settle wait time = 1454 ms, measure time = 102 ms (allowed 150 ms), total time = 1556 ms
17-03-17 23:23:52.368 -07 000000486 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 23:23:52.418 -07 000000486 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1612 ms
17-03-17 23:23:52.418 -07 000000486 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:23:52.418 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:23:52.418 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:23:52.418 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:23:52.418 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:23:52.418 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:23:52.418 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:23:52.418 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:23:52.418 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:23:52.428 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:23:52.428 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:23:52.438 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 23:23:52.438 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 23:23:52.438 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:23:52.488 -07 000000593 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:23:52.688 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:23:52.688 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:23:52.688 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:23:52.688 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1113297000, 0x0, 559484976) start.
17-03-17 23:23:52.728 -07 000000576 INF: FPGA: Recv @CAMSNAP 282
17-03-17 23:23:52.728 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-17 23:23:52.728 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 286 ms overall
17-03-17 23:23:52.808 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1113297000, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 23:23:52.808 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:23:52.818 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:23:52.818 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 23:23:52.828 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:23:52.828 -07 000000623 INF: Autofocus start
17-03-17 23:23:52.828 -07 000000623 INF: MeasureProfile start
17-03-17 23:23:52.828 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:23:52.838 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:23:52.838 -07 000000486 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:23:52.838 -07 000000623 INF: MeasureProfile done
17-03-17 23:23:52.838 -07 000000623 INF: X=0  Z correction [um]=-0.0713522
17-03-17 23:23:52.838 -07 000000623 INF: Autofocus finished
17-03-17 23:23:53.038 -07 000000482 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:23:53.038 -07 000000486 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:23:53.038 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02734375, Z-position -0.175083336307506. ----------
17-03-17 23:23:53.038 -07 000000610 INF: Cycle	75	Tile	12	Exposure Settings		A	474	G	228	T	228	C	474
17-03-17 23:23:53.048 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36741, sync = True, waitForSettling = True)
17-03-17 23:23:53.048 -07 000000610 INF: Z Motor: Moving to -0.168190 mm, started at -0.175083 mm, distance = 6.89 um
17-03-17 23:23:53.048 -07 000000610 INF: FPGA: Xmit ZDACW 36741\n [Z Motor]
17-03-17 23:23:53.048 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 23:23:53.058 -07 000000610 INF: FPGA: 'ZDACW 36741' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:23:53.058 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:23:53.058 -07 000000502 INF: FPGA: Recv ZDACR 36741
17-03-17 23:23:53.068 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:53.068 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:23:53.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:53.218 -07 000000551 INF: FPGA: Recv ZSGSRD 35472
17-03-17 23:23:53.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:53.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:53.228 -07 000000576 INF: FPGA: Recv ZSGSRD 35475
17-03-17 23:23:53.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:53.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:53.238 -07 000000501 INF: FPGA: Recv ZSGSRD 35463
17-03-17 23:23:53.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:53.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:53.248 -07 000000382 INF: FPGA: Recv ZSGSRD 35473
17-03-17 23:23:53.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:53.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:53.258 -07 000000475 INF: FPGA: Recv ZSGSRD 35476
17-03-17 23:23:53.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:53.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:53.268 -07 000000551 INF: FPGA: Recv ZSGSRD 35471
17-03-17 23:23:53.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:53.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:53.278 -07 000000501 INF: FPGA: Recv ZSGSRD 35477
17-03-17 23:23:53.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:53.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:53.288 -07 000000482 INF: FPGA: Recv ZSGSRD 35470
17-03-17 23:23:53.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:53.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:53.298 -07 000000486 INF: FPGA: Recv ZSGSRD 35468
17-03-17 23:23:53.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:53.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:53.308 -07 000000551 INF: FPGA: Recv ZSGSRD 35470
17-03-17 23:23:53.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:53.318 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:23:53.318 -07 000000429 INF: FPGA: Recv ZPIEZORD 31301
17-03-17 23:23:53.328 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:53.328 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.606 V. Piezo Error = -9.2 V.
17-03-17 23:23:53.328 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.2 um, Read 10 ADC samples: Avg = 35472 (-167.3 uncal um), Error = 0.9 uncal um, Median = 35472 (-167.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35463 (-167.3 uncal um), Max = 35477 (-167.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 23:23:53.328 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35472, posNoise = 5, negNoise = 9
17-03-17 23:23:53.328 -07 000000610 INF: Z Motor: After move to -0.168190, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:23:53.328 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 23:23:53.328 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:23:53.328 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:23:53.328 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:23:53.328 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:23:53.328 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:23:53.328 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:23:53.328 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:23:53.328 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:23:53.328 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:23:53.328 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:23:53.328 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:23:53.328 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:23:53.338 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 23:23:53.338 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:23:53.338 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:23:53.338 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:23:53.338 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 23:23:53.338 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 23:23:53.348 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 23:23:53.348 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:23:53.348 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 474 474 228 228 36918 150\n [Camera]
17-03-17 23:23:53.548 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:23:53.698 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 75, FrontChillerTemperature: 3.971733,
17-03-17 23:23:54.018 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 666
17-03-17 23:23:54.018 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 666
17-03-17 23:23:54.018 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:23:54.028 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:23:54.028 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 23:23:54.028 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 666
17-03-17 23:23:54.028 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 666
17-03-17 23:23:54.028 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:23:54.028 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:23:54.028 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 23:23:54.218 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36918 859
17-03-17 23:23:54.368 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1009
17-03-17 23:23:54.408 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 23:23:54.408 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 23:23:54.408 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:23:54.408 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 23:23:54.408 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 23:23:54.408 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:23:54.418 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:23:54.418 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 23:23:54.418 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:23:54.428 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 23:23:54.588 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1237
17-03-17 23:23:54.588 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1237
17-03-17 23:23:54.588 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:23:54.598 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:23:54.598 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 23:23:54.598 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1237
17-03-17 23:23:54.598 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1237
17-03-17 23:23:54.598 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:23:54.598 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:23:54.598 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start.
17-03-17 23:23:54.788 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1430
17-03-17 23:23:54.788 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:23:54.788 -07 000000610 INF: FPGA: 'CAMDBLSNAP 474 474 228 228 36918 150' command took 2 ms to send, 1430 ms to get response, and 1436 ms overall
17-03-17 23:23:54.788 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:23:54.788 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02734375, Z-Position -0.16820300510368. ------
17-03-17 23:23:54.788 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17458 mm
17-03-17 23:23:54.788 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:23:54.788 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:23:54.798 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 23:23:54.798 -07 000000502 INF: Y Motor: Moving to 69.8726 mm, started at 69.0273 mm, delta = 0.8453 mm
17-03-17 23:23:54.798 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:23:54.798 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 38137, sync = True, waitForSettling = False)
17-03-17 23:23:54.798 -07 000000576 INF: Z Motor: Moving to -0.174580 mm, started at -0.168203 mm, distance = -6.38 um
17-03-17 23:23:54.798 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:23:54.798 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 23:23:54.798 -07 000000475 INF: FPGA: Recv YRDPOS 141368
17-03-17 23:23:54.808 -07 000000551 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:23:54.808 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:23:54.808 -07 000000502 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:23:54.808 -07 000000502 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:23:54.808 -07 000000502 INF: Y Motor: Moving 1352 steps-31
17-03-17 23:23:54.818 -07 000000576 INF: FPGA: Xmit ZDACW 38137\n [Z Motor]
17-03-17 23:23:54.818 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 23:23:54.828 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:23:54.828 -07 000000576 INF: FPGA: 'ZDACW 38137' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 23:23:54.838 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:23:54.838 -07 000000623 INF: FPGA: Recv ZDACR 38137
17-03-17 23:23:54.848 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:23:54.848 -07 000000576 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 23:23:54.978 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 23:23:54.978 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 23:23:54.978 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:23:54.978 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 23:23:54.978 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 23:23:54.978 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:23:54.978 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:23:54.978 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:23:54.978 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 23:23:54.988 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 23:23:55.008 -07 000000478 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:23:55.008 -07 000000551 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 210 ms overall
17-03-17 23:23:55.198 -07 000000486 INF: FPGA: Recv YMVTILE
17-03-17 23:23:55.198 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 23:23:55.248 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:23:55.248 -07 000000433 INF: FPGA: Recv YRDPOS 143080
17-03-17 23:23:55.258 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:55.258 -07 000000502 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:23:55.258 -07 000000502 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 23:23:55.258 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.129 mm/sec
17-03-17 23:23:56.208 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:23:56.208 -07 000000429 INF: FPGA: Recv YRDPOS 143080
17-03-17 23:23:56.218 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:23:56.218 -07 000000502 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:23:56.238 -07 000000502 INF: Y Motor: After move to 69.872612, error = -0.009331, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:23:56.238 -07 000000502 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:23:56.238 -07 000000502 INF: Y Motor: Moved to 69.8633 after 1445 ms (table move)
17-03-17 23:23:56.238 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174580 mm (DAC = 38137)
17-03-17 23:23:56.238 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:56.248 -07 000000486 INF: FPGA: Recv ZSGSRD 36474
17-03-17 23:23:56.258 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:23:56.258 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:56.258 -07 000000551 INF: FPGA: Recv ZSGSRD 36464
17-03-17 23:23:56.268 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:56.268 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:56.268 -07 000000462 INF: FPGA: Recv ZSGSRD 36475
17-03-17 23:23:56.278 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:56.278 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:56.278 -07 000000502 INF: FPGA: Recv ZSGSRD 36465
17-03-17 23:23:56.288 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:56.288 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:56.288 -07 000000429 INF: FPGA: Recv ZSGSRD 36461
17-03-17 23:23:56.298 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:56.298 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:56.298 -07 000000576 INF: FPGA: Recv ZSGSRD 36461
17-03-17 23:23:56.308 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:56.308 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:56.308 -07 000000475 INF: FPGA: Recv ZSGSRD 36459
17-03-17 23:23:56.318 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:56.318 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:56.318 -07 000000551 INF: FPGA: Recv ZSGSRD 36470
17-03-17 23:23:56.328 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:56.328 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:56.328 -07 000000429 INF: FPGA: Recv ZSGSRD 36469
17-03-17 23:23:56.338 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:56.338 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:56.338 -07 000000623 INF: FPGA: Recv ZSGSRD 36473
17-03-17 23:23:56.348 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:56.348 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:23:56.348 -07 000000480 INF: FPGA: Recv ZPIEZORD 32656
17-03-17 23:23:56.358 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:56.358 -07 000000382 INF: Z Motor: Piezo is near 49.8 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.819 V. Piezo Error = -8.4 V.
17-03-17 23:23:56.358 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.6 um, Read 10 ADC samples: Avg = 36467 (-173.7 uncal um), Error = 0.9 uncal um, Median = 36467 (-173.7 uncal um), StdDev = 6 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36459 (-173.7 uncal um), Max = 36475 (-173.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 23:23:56.358 -07 000000382 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36467, posNoise = 8, negNoise = 8
17-03-17 23:23:56.358 -07 000000382 INF: Z Motor: After move to -0.174580, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:23:56.358 -07 000000382 INF: Z Motor: Settle wait time = 1448 ms, measure time = 111 ms (allowed 150 ms), total time = 1559 ms
17-03-17 23:23:56.358 -07 000000382 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 23:23:56.398 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1601 ms
17-03-17 23:23:56.398 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:23:56.398 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:23:56.398 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:23:56.398 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:23:56.398 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:23:56.398 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:23:56.398 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:23:56.408 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:23:56.408 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:23:56.408 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 23:23:56.408 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:23:56.418 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-17 23:23:56.418 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 23:23:56.418 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:23:56.468 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:23:56.668 -07 000000593 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:23:56.668 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:23:56.668 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:23:56.668 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1172205952, 0x0, 559484976) start.
17-03-17 23:23:56.708 -07 000000478 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:23:56.708 -07 000000433 INF: FPGA: Recv CAMSNAP
17-03-17 23:23:56.708 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 3 ms to send, 274 ms to get response, and 285 ms overall
17-03-17 23:23:56.788 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1172205952, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 23:23:56.788 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:23:56.788 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 23:23:56.788 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 23:23:56.808 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:23:56.808 -07 000000486 INF: Autofocus start
17-03-17 23:23:56.808 -07 000000486 INF: MeasureProfile start
17-03-17 23:23:56.808 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:23:56.818 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:23:56.818 -07 000000593 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:23:56.818 -07 000000486 INF: MeasureProfile done
17-03-17 23:23:56.818 -07 000000486 INF: X=16  Z correction [um]=0.01042744
17-03-17 23:23:56.818 -07 000000486 INF: Autofocus finished
17-03-17 23:23:57.018 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:23:57.018 -07 000000593 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 202 ms overall
17-03-17 23:23:57.018 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86328125, Z-position -0.174595096184732. ----------
17-03-17 23:23:57.018 -07 000000610 INF: Cycle	75	Tile	13	Exposure Settings		A	474	G	228	T	228	C	474
17-03-17 23:23:57.028 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36652, sync = True, waitForSettling = True)
17-03-17 23:23:57.028 -07 000000610 INF: Z Motor: Moving to -0.167782 mm, started at -0.174595 mm, distance = 6.81 um
17-03-17 23:23:57.028 -07 000000610 INF: FPGA: Xmit ZDACW 36652\n [Z Motor]
17-03-17 23:23:57.028 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 23:23:57.038 -07 000000610 INF: FPGA: 'ZDACW 36652' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:57.038 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:23:57.038 -07 000000482 INF: FPGA: Recv ZDACR 36652
17-03-17 23:23:57.048 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:57.048 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:23:57.068 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:23:57.068 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 74. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1192, R2=1246, Total=2438. Warn if over 250 bubbles per interval.
17-03-17 23:23:57.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:57.198 -07 000000551 INF: FPGA: Recv ZSGSRD 35409
17-03-17 23:23:57.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:57.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:57.208 -07 000000478 INF: FPGA: Recv ZSGSRD 35411
17-03-17 23:23:57.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:57.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:57.218 -07 000000486 INF: FPGA: Recv ZSGSRD 35412
17-03-17 23:23:57.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:57.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:57.228 -07 000000480 INF: FPGA: Recv ZSGSRD 35399
17-03-17 23:23:57.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:57.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:57.238 -07 000000475 INF: FPGA: Recv ZSGSRD 35404
17-03-17 23:23:57.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:57.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:57.248 -07 000000623 INF: FPGA: Recv ZSGSRD 35411
17-03-17 23:23:57.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:57.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:57.258 -07 000000486 INF: FPGA: Recv ZSGSRD 35409
17-03-17 23:23:57.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:57.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:57.268 -07 000000551 INF: FPGA: Recv ZSGSRD 35416
17-03-17 23:23:57.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:57.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:57.278 -07 000000502 INF: FPGA: Recv ZSGSRD 35408
17-03-17 23:23:57.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:57.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:23:57.288 -07 000000576 INF: FPGA: Recv ZSGSRD 35406
17-03-17 23:23:57.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:57.298 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:23:57.298 -07 000000486 INF: FPGA: Recv ZPIEZORD 31179
17-03-17 23:23:57.308 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:23:57.308 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.593 V. Piezo Error = -9.3 V.
17-03-17 23:23:57.308 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.8 um, Read 10 ADC samples: Avg = 35408 (-166.9 uncal um), Error = 0.9 uncal um, Median = 35409 (-166.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 35399 (-166.9 uncal um), Max = 35416 (-167.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 23:23:57.308 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35408, posNoise = 8, negNoise = 9
17-03-17 23:23:57.308 -07 000000610 INF: Z Motor: After move to -0.167782, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:23:57.308 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 23:23:57.308 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:23:57.308 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:23:57.308 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:23:57.308 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:23:57.308 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:23:57.308 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:23:57.308 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:23:57.308 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:23:57.308 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:23:57.308 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:23:57.308 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:23:57.308 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:23:57.308 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:23:57.308 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:23:57.318 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 23:23:57.318 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:23:57.328 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 23:23:57.328 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:23:57.328 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 23:23:57.328 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:23:57.338 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 474 474 228 228 36829 150\n [Camera]
17-03-17 23:23:57.528 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:23:58.008 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 666
17-03-17 23:23:58.008 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 666
17-03-17 23:23:58.008 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:23:58.008 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:23:58.008 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2216660184, 0x0, 391868352) start.
17-03-17 23:23:58.008 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 666
17-03-17 23:23:58.008 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 666
17-03-17 23:23:58.008 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:23:58.008 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:23:58.008 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 23:23:58.198 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36829 859
17-03-17 23:23:58.348 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1012
17-03-17 23:23:58.408 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2216660184, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 23:23:58.408 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 23:23:58.408 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:23:58.408 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 23:23:58.408 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 23:23:58.408 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:23:58.408 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:23:58.408 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 23:23:58.418 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:23:58.418 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 23:23:58.578 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1237
17-03-17 23:23:58.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1237
17-03-17 23:23:58.578 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:23:58.578 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:23:58.578 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 23:23:58.578 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1237
17-03-17 23:23:58.578 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1237
17-03-17 23:23:58.578 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:23:58.578 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:23:58.578 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 23:23:58.768 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP 1429
17-03-17 23:23:58.768 -07 000000478 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:23:58.768 -07 000000610 INF: FPGA: 'CAMDBLSNAP 474 474 228 228 36829 150' command took 2 ms to send, 1427 ms to get response, and 1437 ms overall
17-03-17 23:23:58.778 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:23:58.778 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86328125, Z-Position -0.167791855526607. ------
17-03-17 23:23:58.778 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:23:58.778 -07 000000433 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17429 mm
17-03-17 23:23:58.778 -07 000000433 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:23:58.778 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 23:23:58.778 -07 000000576 INF: Y Motor: Moving to 70.7026 mm, started at 69.8633 mm, delta = 0.8393 mm
17-03-17 23:23:58.778 -07 000000475 INF: Z Motor: Entering MoveAbsStepped (DAC = 38075, sync = True, waitForSettling = False)
17-03-17 23:23:58.778 -07 000000475 INF: Z Motor: Moving to -0.174296 mm, started at -0.167792 mm, distance = -6.50 um
17-03-17 23:23:58.778 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:23:58.788 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:23:58.788 -07 000000475 INF: FPGA: Xmit ZDACW 38075\n [Z Motor]
17-03-17 23:23:58.788 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 23:23:58.798 -07 000000475 INF: FPGA: 'ZDACW 38075' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 23:23:58.798 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:23:58.798 -07 000000502 INF: FPGA: Recv YRDPOS 143080
17-03-17 23:23:58.808 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 23:23:58.808 -07 000000576 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:23:58.808 -07 000000576 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:23:58.808 -07 000000576 INF: Y Motor: Moving 1343 steps-19
17-03-17 23:23:58.808 -07 000000486 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:23:58.818 -07 000000475 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:23:58.818 -07 000000462 INF: FPGA: Recv ZDACR 38075
17-03-17 23:23:58.828 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:23:58.828 -07 000000475 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 23:23:58.828 -07 000000475 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 23:23:58.978 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 23:23:58.978 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 23:23:58.978 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:23:58.988 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 23:23:58.988 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 23:23:58.988 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:23:58.988 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:23:58.988 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 23:23:58.988 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 23:23:58.998 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 23:23:59.008 -07 000000593 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:23:59.008 -07 000000486 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 223 ms overall
17-03-17 23:23:59.058 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 75, FrontChillerTemperature: 4.02213,
17-03-17 23:23:59.198 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-17 23:23:59.198 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 23:23:59.248 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:23:59.248 -07 000000502 INF: FPGA: Recv YRDPOS 144770
17-03-17 23:23:59.258 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:23:59.258 -07 000000576 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:23:59.258 -07 000000576 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 23:23:59.258 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.839 mm, average velocity = 2.109 mm/sec
17-03-17 23:24:00.208 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:24:00.208 -07 000000475 INF: FPGA: Recv YRDPOS 144770
17-03-17 23:24:00.218 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:24:00.218 -07 000000576 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:24:00.238 -07 000000576 INF: Y Motor: After move to 70.702606, error = -0.014130, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:24:00.238 -07 000000576 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:24:00.238 -07 000000576 INF: Y Motor: Moved to 70.6885 after 1459 ms (table move)
17-03-17 23:24:00.248 -07 000000433 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174296 mm (DAC = 38075)
17-03-17 23:24:00.248 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:00.248 -07 000000475 INF: FPGA: Recv ZSGSRD 36426
17-03-17 23:24:00.258 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:24:00.258 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:00.258 -07 000000576 INF: FPGA: Recv ZSGSRD 36420
17-03-17 23:24:00.268 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:00.268 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:00.268 -07 000000480 INF: FPGA: Recv ZSGSRD 36424
17-03-17 23:24:00.278 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:00.278 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:00.278 -07 000000486 INF: FPGA: Recv ZSGSRD 36426
17-03-17 23:24:00.288 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:00.288 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:00.288 -07 000000429 INF: FPGA: Recv ZSGSRD 36416
17-03-17 23:24:00.298 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:00.298 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:00.298 -07 000000623 INF: FPGA: Recv ZSGSRD 36419
17-03-17 23:24:00.308 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:00.308 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:00.308 -07 000000482 INF: FPGA: Recv ZSGSRD 36420
17-03-17 23:24:00.318 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:00.318 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:00.318 -07 000000486 INF: FPGA: Recv ZSGSRD 36420
17-03-17 23:24:00.328 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:00.328 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:00.328 -07 000000593 INF: FPGA: Recv ZSGSRD 36420
17-03-17 23:24:00.338 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:00.338 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:00.338 -07 000000502 INF: FPGA: Recv ZSGSRD 36419
17-03-17 23:24:00.348 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:00.348 -07 000000433 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:24:00.348 -07 000000482 INF: FPGA: Recv ZPIEZORD 32570
17-03-17 23:24:00.358 -07 000000433 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:00.358 -07 000000433 INF: Z Motor: Piezo is near 49.6 V (nominally 0 to 100 V), expect near 58.1 V, since DAC is at 5.810 V. Piezo Error = -8.5 V.
17-03-17 23:24:00.358 -07 000000433 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.3 um, Read 10 ADC samples: Avg = 36421 (-173.4 uncal um), Error = 0.9 uncal um, Median = 36420 (-173.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36416 (-173.4 uncal um), Max = 36426 (-173.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:24:00.358 -07 000000433 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36421, posNoise = 5, negNoise = 5
17-03-17 23:24:00.358 -07 000000433 INF: Z Motor: After move to -0.174296, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:24:00.358 -07 000000433 INF: Z Motor: Settle wait time = 1462 ms, measure time = 110 ms (allowed 150 ms), total time = 1572 ms
17-03-17 23:24:00.358 -07 000000433 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 23:24:00.398 -07 000000433 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1615 ms
17-03-17 23:24:00.398 -07 000000433 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:24:00.398 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:24:00.398 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:24:00.398 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:24:00.398 -07 000000429 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:24:00.398 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:24:00.398 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:24:00.408 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:24:00.408 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:24:00.408 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:24:00.408 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:24:00.418 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 23:24:00.418 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 23:24:00.418 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:24:00.458 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:24:00.658 -07 000000623 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:24:00.658 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:24:00.658 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:24:00.658 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) start.
17-03-17 23:24:00.698 -07 000000501 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:24:00.698 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 23:24:00.698 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 23:24:00.778 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 23:24:00.778 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:24:00.778 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 23:24:00.778 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 23:24:00.798 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:24:00.798 -07 000000433 INF: Autofocus start
17-03-17 23:24:00.798 -07 000000433 INF: MeasureProfile start
17-03-17 23:24:00.798 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:24:00.808 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:24:00.808 -07 000000486 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:24:00.808 -07 000000433 INF: MeasureProfile done
17-03-17 23:24:00.808 -07 000000433 INF: X=0  Z correction [um]=-0.0713522
17-03-17 23:24:00.808 -07 000000433 INF: Autofocus finished
17-03-17 23:24:01.008 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:24:01.008 -07 000000486 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:24:01.008 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6884765625, Z-position -0.174299582426211. ----------
17-03-17 23:24:01.018 -07 000000610 INF: Cycle	75	Tile	14	Exposure Settings		A	474	G	228	T	228	C	474
17-03-17 23:24:01.018 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36572, sync = True, waitForSettling = True)
17-03-17 23:24:01.018 -07 000000610 INF: Z Motor: Moving to -0.167416 mm, started at -0.174300 mm, distance = 6.88 um
17-03-17 23:24:01.018 -07 000000610 INF: FPGA: Xmit ZDACW 36572\n [Z Motor]
17-03-17 23:24:01.018 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 23:24:01.028 -07 000000610 INF: FPGA: 'ZDACW 36572' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:24:01.028 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:24:01.028 -07 000000576 INF: FPGA: Recv ZDACR 36572
17-03-17 23:24:01.038 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:01.038 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:24:01.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:01.188 -07 000000482 INF: FPGA: Recv ZSGSRD 35345
17-03-17 23:24:01.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:01.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:01.198 -07 000000480 INF: FPGA: Recv ZSGSRD 35354
17-03-17 23:24:01.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:01.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:01.208 -07 000000551 INF: FPGA: Recv ZSGSRD 35349
17-03-17 23:24:01.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:01.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:01.218 -07 000000623 INF: FPGA: Recv ZSGSRD 35346
17-03-17 23:24:01.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:01.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:01.228 -07 000000462 INF: FPGA: Recv ZSGSRD 35353
17-03-17 23:24:01.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:01.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:01.238 -07 000000475 INF: FPGA: Recv ZSGSRD 35353
17-03-17 23:24:01.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:01.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:01.248 -07 000000433 INF: FPGA: Recv ZSGSRD 35353
17-03-17 23:24:01.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:01.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:01.258 -07 000000623 INF: FPGA: Recv ZSGSRD 35351
17-03-17 23:24:01.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:01.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:01.268 -07 000000501 INF: FPGA: Recv ZSGSRD 35346
17-03-17 23:24:01.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:01.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:01.278 -07 000000576 INF: FPGA: Recv ZSGSRD 35354
17-03-17 23:24:01.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:01.288 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:24:01.288 -07 000000433 INF: FPGA: Recv ZPIEZORD 31128
17-03-17 23:24:01.298 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:01.298 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.581 V. Piezo Error = -9.3 V.
17-03-17 23:24:01.298 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.4 um, Read 10 ADC samples: Avg = 35350 (-166.6 uncal um), Error = 0.9 uncal um, Median = 35352 (-166.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35345 (-166.5 uncal um), Max = 35354 (-166.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:24:01.298 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35350, posNoise = 4, negNoise = 5
17-03-17 23:24:01.298 -07 000000610 INF: Z Motor: After move to -0.167416, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:24:01.298 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 23:24:01.298 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:24:01.298 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:24:01.298 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:24:01.298 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:24:01.298 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:24:01.298 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:24:01.298 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:24:01.298 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:24:01.298 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:24:01.298 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:24:01.298 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 23:24:01.298 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:24:01.308 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 23:24:01.308 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:24:01.308 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:24:01.308 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:24:01.318 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 23:24:01.318 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 23:24:01.318 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 23:24:01.318 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 23:24:01.318 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 474 474 228 228 36748 150\n [Camera]
17-03-17 23:24:01.518 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:24:01.998 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 666
17-03-17 23:24:01.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 666
17-03-17 23:24:01.998 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:24:01.998 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:24:01.998 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 23:24:01.998 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 666
17-03-17 23:24:01.998 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 666
17-03-17 23:24:01.998 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:24:01.998 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:24:01.998 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 23:24:02.068 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:24:02.068 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 74. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1192, R2=1246, Total=2438. Warn if over 250 bubbles per interval.
17-03-17 23:24:02.188 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36748 859
17-03-17 23:24:02.338 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1009
17-03-17 23:24:02.388 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 23:24:02.388 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 23:24:02.388 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:24:02.388 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 392 ms.
17-03-17 23:24:02.388 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 23:24:02.388 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:24:02.398 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:24:02.398 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 23:24:02.398 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 23:24:02.408 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 23:24:02.568 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1237
17-03-17 23:24:02.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1237
17-03-17 23:24:02.568 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:24:02.568 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:24:02.568 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start.
17-03-17 23:24:02.568 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1237
17-03-17 23:24:02.568 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1237
17-03-17 23:24:02.568 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:24:02.568 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:24:02.568 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start.
17-03-17 23:24:02.758 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP 1430
17-03-17 23:24:02.758 -07 000000475 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:24:02.758 -07 000000610 INF: FPGA: 'CAMDBLSNAP 474 474 228 228 36748 150' command took 2 ms to send, 1425 ms to get response, and 1437 ms overall
17-03-17 23:24:02.758 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:24:02.758 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6884765625, Z-Position -0.167419251222385. ------
17-03-17 23:24:02.768 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:24:02.768 -07 000000482 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17407 mm
17-03-17 23:24:02.768 -07 000000482 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:24:02.768 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:24:02.768 -07 000000593 INF: Z Motor: Entering MoveAbsStepped (DAC = 38025, sync = True, waitForSettling = False)
17-03-17 23:24:02.768 -07 000000593 INF: Z Motor: Moving to -0.174067 mm, started at -0.167419 mm, distance = -6.65 um
17-03-17 23:24:02.768 -07 000000551 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 23:24:02.768 -07 000000551 INF: Y Motor: Moving to 71.5326 mm, started at 70.6885 mm, delta = 0.8441 mm
17-03-17 23:24:02.778 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:02.778 -07 000000593 INF: FPGA: Xmit ZDACW 38025\n [Z Motor]
17-03-17 23:24:02.778 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 23:24:02.788 -07 000000593 INF: FPGA: 'ZDACW 38025' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 23:24:02.788 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:24:02.788 -07 000000501 INF: FPGA: Recv YRDPOS 144770
17-03-17 23:24:02.798 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:24:02.798 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 23:24:02.798 -07 000000551 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:24:02.798 -07 000000551 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:24:02.798 -07 000000551 INF: Y Motor: Moving 1351 steps-29
17-03-17 23:24:02.808 -07 000000593 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:24:02.808 -07 000000501 INF: FPGA: Recv ZDACR 38025
17-03-17 23:24:02.818 -07 000000593 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:24:02.818 -07 000000593 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet))
17-03-17 23:24:02.818 -07 000000551 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:24:02.968 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 23:24:02.968 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 23:24:02.968 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:24:02.968 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 23:24:02.978 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 23:24:02.978 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:24:02.978 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:24:02.978 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 23:24:02.978 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 23:24:02.988 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 23:24:02.998 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:24:02.998 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 23:24:03.188 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-17 23:24:03.188 -07 000000551 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 23:24:03.238 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:24:03.238 -07 000000593 INF: FPGA: Recv YRDPOS 146471
17-03-17 23:24:03.248 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:03.248 -07 000000551 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:24:03.248 -07 000000551 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 23:24:03.248 -07 000000551 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.126 mm/sec
17-03-17 23:24:04.198 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:24:04.198 -07 000000475 INF: FPGA: Recv YRDPOS 146471
17-03-17 23:24:04.208 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:24:04.208 -07 000000551 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:24:04.228 -07 000000551 INF: Y Motor: After move to 71.532608, error = -0.013565, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:24:04.228 -07 000000551 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:24:04.228 -07 000000551 INF: Y Motor: Moved to 71.5190 after 1461 ms (table move)
17-03-17 23:24:04.238 -07 000000482 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174067 mm (DAC = 38025)
17-03-17 23:24:04.238 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:04.238 -07 000000502 INF: FPGA: Recv ZSGSRD 36389
17-03-17 23:24:04.248 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:24:04.248 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:04.248 -07 000000475 INF: FPGA: Recv ZSGSRD 36386
17-03-17 23:24:04.258 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:04.258 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:04.258 -07 000000501 INF: FPGA: Recv ZSGSRD 36390
17-03-17 23:24:04.268 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:04.268 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:04.268 -07 000000382 INF: FPGA: Recv ZSGSRD 36391
17-03-17 23:24:04.278 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:04.278 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:04.278 -07 000000623 INF: FPGA: Recv ZSGSRD 36388
17-03-17 23:24:04.288 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:04.288 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:04.288 -07 000000478 INF: FPGA: Recv ZSGSRD 36385
17-03-17 23:24:04.298 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:04.298 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:04.298 -07 000000462 INF: FPGA: Recv ZSGSRD 36379
17-03-17 23:24:04.308 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:04.308 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:04.308 -07 000000382 INF: FPGA: Recv ZSGSRD 36378
17-03-17 23:24:04.318 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:04.318 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:04.318 -07 000000623 INF: FPGA: Recv ZSGSRD 36388
17-03-17 23:24:04.328 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:04.328 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:04.328 -07 000000475 INF: FPGA: Recv ZSGSRD 36382
17-03-17 23:24:04.338 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:04.338 -07 000000482 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:24:04.338 -07 000000478 INF: FPGA: Recv ZPIEZORD 32503
17-03-17 23:24:04.348 -07 000000482 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:04.348 -07 000000482 INF: Z Motor: Piezo is near 49.4 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.802 V. Piezo Error = -8.6 V.
17-03-17 23:24:04.348 -07 000000482 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.1 um, Read 10 ADC samples: Avg = 36386 (-173.2 uncal um), Error = 0.9 uncal um, Median = 36387 (-173.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36378 (-173.1 uncal um), Max = 36391 (-173.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 23:24:04.348 -07 000000482 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36386, posNoise = 5, negNoise = 8
17-03-17 23:24:04.348 -07 000000482 INF: Z Motor: After move to -0.174067, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:24:04.348 -07 000000482 INF: Z Motor: Settle wait time = 1466 ms, measure time = 108 ms (allowed 150 ms), total time = 1574 ms
17-03-17 23:24:04.348 -07 000000482 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 23:24:04.398 -07 000000482 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1629 ms
17-03-17 23:24:04.398 -07 000000482 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:24:04.398 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:24:04.398 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:24:04.398 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:24:04.398 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:24:04.398 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:24:04.398 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:24:04.398 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:24:04.398 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:24:04.408 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:24:04.408 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:24:04.408 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 23:24:04.408 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 23:24:04.428 -07 000000462 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 75, FrontChillerTemperature: 4.042558,
17-03-17 23:24:04.438 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:24:04.478 -07 000000482 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:24:04.678 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:24:04.678 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:24:04.678 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:24:04.678 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) start.
17-03-17 23:24:04.718 -07 000000501 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:24:04.718 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-17 23:24:04.718 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 274 ms to get response, and 303 ms overall
17-03-17 23:24:04.798 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 23:24:04.798 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:24:04.798 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 23:24:04.798 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 23:24:04.818 -07 000000501 INF: Autofocus start
17-03-17 23:24:04.818 -07 000000501 INF: MeasureProfile start
17-03-17 23:24:04.818 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:24:04.818 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:24:04.828 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:24:04.828 -07 000000593 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:24:04.828 -07 000000501 INF: MeasureProfile done
17-03-17 23:24:04.828 -07 000000501 INF: X=16  Z correction [um]=0.01042744
17-03-17 23:24:04.828 -07 000000501 INF: Autofocus finished
17-03-17 23:24:05.028 -07 000000478 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:24:05.028 -07 000000593 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall
17-03-17 23:24:05.038 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51904296875, Z-position -0.174074735001249. ----------
17-03-17 23:24:05.038 -07 000000610 INF: Cycle	75	Tile	15	Exposure Settings		A	474	G	228	T	228	C	474
17-03-17 23:24:05.038 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36539, sync = True, waitForSettling = True)
17-03-17 23:24:05.038 -07 000000610 INF: Z Motor: Moving to -0.167265 mm, started at -0.174075 mm, distance = 6.81 um
17-03-17 23:24:05.038 -07 000000610 INF: FPGA: Xmit ZDACW 36539\n [Z Motor]
17-03-17 23:24:05.038 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 23:24:05.048 -07 000000610 INF: FPGA: 'ZDACW 36539' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:24:05.048 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:24:05.048 -07 000000475 INF: FPGA: Recv ZDACR 36539
17-03-17 23:24:05.058 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:05.058 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:24:05.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:05.208 -07 000000501 INF: FPGA: Recv ZSGSRD 35330
17-03-17 23:24:05.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:24:05.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:05.218 -07 000000576 INF: FPGA: Recv ZSGSRD 35331
17-03-17 23:24:05.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:05.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:05.228 -07 000000433 INF: FPGA: Recv ZSGSRD 35328
17-03-17 23:24:05.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:05.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:05.238 -07 000000475 INF: FPGA: Recv ZSGSRD 35327
17-03-17 23:24:05.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:05.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:05.248 -07 000000502 INF: FPGA: Recv ZSGSRD 35327
17-03-17 23:24:05.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:05.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:05.258 -07 000000486 INF: FPGA: Recv ZSGSRD 35332
17-03-17 23:24:05.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:05.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:05.268 -07 000000382 INF: FPGA: Recv ZSGSRD 35326
17-03-17 23:24:05.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:05.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:05.278 -07 000000462 INF: FPGA: Recv ZSGSRD 35325
17-03-17 23:24:05.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:05.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:05.288 -07 000000502 INF: FPGA: Recv ZSGSRD 35330
17-03-17 23:24:05.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:05.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:05.298 -07 000000433 INF: FPGA: Recv ZSGSRD 35325
17-03-17 23:24:05.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:05.308 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:24:05.308 -07 000000576 INF: FPGA: Recv ZPIEZORD 31109
17-03-17 23:24:05.318 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:05.318 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.575 V. Piezo Error = -9.3 V.
17-03-17 23:24:05.318 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.3 um, Read 10 ADC samples: Avg = 35328 (-166.4 uncal um), Error = 0.9 uncal um, Median = 35328 (-166.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35325 (-166.4 uncal um), Max = 35332 (-166.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 23:24:05.318 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35328, posNoise = 4, negNoise = 3
17-03-17 23:24:05.318 -07 000000610 INF: Z Motor: After move to -0.167265, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:24:05.318 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 23:24:05.318 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:24:05.318 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:24:05.318 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:24:05.318 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:24:05.318 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:24:05.318 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:24:05.318 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:24:05.318 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:24:05.318 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:24:05.318 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:24:05.318 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:24:05.318 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:24:05.328 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:24:05.328 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:24:05.328 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:24:05.328 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:24:05.338 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-17 23:24:05.338 -07 000000462 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 23:24:05.338 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-17 23:24:05.338 -07 000000429 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 23:24:05.338 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 474 474 228 228 36716 150\n [Camera]
17-03-17 23:24:05.538 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:24:06.018 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 666
17-03-17 23:24:06.018 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 666
17-03-17 23:24:06.018 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:24:06.018 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:24:06.018 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start.
17-03-17 23:24:06.018 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 666
17-03-17 23:24:06.018 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 666
17-03-17 23:24:06.018 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:24:06.018 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:24:06.018 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start.
17-03-17 23:24:06.208 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36716 859
17-03-17 23:24:06.358 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1009
17-03-17 23:24:06.418 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 23:24:06.418 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 23:24:06.418 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:24:06.418 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 23:24:06.418 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 23:24:06.418 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:24:06.428 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:24:06.428 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 23:24:06.428 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:24:06.428 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 23:24:06.588 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1237
17-03-17 23:24:06.588 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1237
17-03-17 23:24:06.588 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:24:06.588 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:24:06.588 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start.
17-03-17 23:24:06.588 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1237
17-03-17 23:24:06.588 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1237
17-03-17 23:24:06.588 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:24:06.718 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:24:06.718 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 23:24:06.778 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1429
17-03-17 23:24:06.778 -07 000000429 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:24:06.778 -07 000000610 INF: FPGA: 'CAMDBLSNAP 474 474 228 228 36716 150' command took 2 ms to send, 1425 ms to get response, and 1436 ms overall
17-03-17 23:24:06.778 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:24:06.778 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51904296875, Z-Position -0.167277918555266. ------
17-03-17 23:24:06.788 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:24:06.788 -07 000000486 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17374 mm
17-03-17 23:24:06.788 -07 000000486 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:24:06.788 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 37954, sync = True, waitForSettling = False)
17-03-17 23:24:06.788 -07 000000502 INF: Z Motor: Moving to -0.173742 mm, started at -0.167278 mm, distance = -6.46 um
17-03-17 23:24:06.788 -07 000000551 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 23:24:06.788 -07 000000551 INF: Y Motor: Moving to 72.3626 mm, started at 71.5190 mm, delta = 0.8436 mm
17-03-17 23:24:06.788 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:24:06.798 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:06.798 -07 000000593 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:24:06.808 -07 000000502 INF: FPGA: Xmit ZDACW 37954\n [Z Motor]
17-03-17 23:24:06.808 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 23:24:06.818 -07 000000502 INF: FPGA: 'ZDACW 37954' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 23:24:06.818 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:24:06.818 -07 000000482 INF: FPGA: Recv YRDPOS 146472
17-03-17 23:24:06.828 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 35 ms overall
17-03-17 23:24:06.828 -07 000000551 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:24:06.828 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:24:06.828 -07 000000475 INF: FPGA: Recv ZDACR 37954
17-03-17 23:24:06.828 -07 000000551 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:24:06.828 -07 000000551 INF: Y Motor: Moving 1349 steps-28
17-03-17 23:24:06.838 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:24:06.838 -07 000000551 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:24:06.838 -07 000000502 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-17 23:24:06.988 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 23:24:06.988 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 23:24:06.988 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:24:06.998 -07 000000429 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:24:06.998 -07 000000593 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:24:06.998 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 23:24:06.998 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 23:24:07.068 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:24:07.068 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 74. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1192, R2=1246, Total=2438. Warn if over 250 bubbles per interval.
17-03-17 23:24:07.108 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 23:24:07.108 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 23:24:07.108 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:24:07.108 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 23:24:07.118 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 528 ms.
17-03-17 23:24:07.208 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-17 23:24:07.208 -07 000000551 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 380 ms overall
17-03-17 23:24:07.258 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:24:07.258 -07 000000576 INF: FPGA: Recv YRDPOS 148172
17-03-17 23:24:07.268 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:24:07.268 -07 000000551 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:24:07.268 -07 000000551 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 23:24:07.268 -07 000000551 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 380 ms, distance = 0.844 mm, average velocity = 2.220 mm/sec
17-03-17 23:24:08.218 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:24:08.218 -07 000000623 INF: FPGA: Recv YRDPOS 148173
17-03-17 23:24:08.228 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:24:08.228 -07 000000551 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:24:08.248 -07 000000551 INF: Y Motor: After move to 72.362610, error = -0.012512, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:24:08.248 -07 000000551 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 23:24:08.248 -07 000000551 INF: Y Motor: Moved to 72.3501 after 1463 ms (table move)
17-03-17 23:24:08.258 -07 000000486 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173742 mm (DAC = 37954)
17-03-17 23:24:08.258 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:08.258 -07 000000501 INF: FPGA: Recv ZSGSRD 36338
17-03-17 23:24:08.268 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:24:08.268 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:08.268 -07 000000480 INF: FPGA: Recv ZSGSRD 36334
17-03-17 23:24:08.278 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:08.278 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:08.278 -07 000000623 INF: FPGA: Recv ZSGSRD 36339
17-03-17 23:24:08.288 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:08.288 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:08.288 -07 000000593 INF: FPGA: Recv ZSGSRD 36339
17-03-17 23:24:08.298 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:08.298 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:08.298 -07 000000501 INF: FPGA: Recv ZSGSRD 36335
17-03-17 23:24:08.308 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:08.308 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:08.308 -07 000000480 INF: FPGA: Recv ZSGSRD 36335
17-03-17 23:24:08.318 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:08.318 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:08.318 -07 000000551 INF: FPGA: Recv ZSGSRD 36341
17-03-17 23:24:08.328 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:08.328 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:08.328 -07 000000433 INF: FPGA: Recv ZSGSRD 36333
17-03-17 23:24:08.338 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:08.338 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:08.338 -07 000000462 INF: FPGA: Recv ZSGSRD 36330
17-03-17 23:24:08.348 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:08.348 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:08.348 -07 000000623 INF: FPGA: Recv ZSGSRD 36339
17-03-17 23:24:08.358 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:08.358 -07 000000486 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:24:08.358 -07 000000475 INF: FPGA: Recv ZPIEZORD 32466
17-03-17 23:24:08.368 -07 000000486 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:08.368 -07 000000486 INF: Z Motor: Piezo is near 49.4 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.791 V. Piezo Error = -8.6 V.
17-03-17 23:24:08.368 -07 000000486 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.7 um, Read 10 ADC samples: Avg = 36336 (-172.9 uncal um), Error = 0.9 uncal um, Median = 36336 (-172.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36330 (-172.8 uncal um), Max = 36341 (-172.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:24:08.368 -07 000000486 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36336, posNoise = 5, negNoise = 6
17-03-17 23:24:08.368 -07 000000486 INF: Z Motor: After move to -0.173742, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:24:08.368 -07 000000486 INF: Z Motor: Settle wait time = 1469 ms, measure time = 107 ms (allowed 150 ms), total time = 1576 ms
17-03-17 23:24:08.368 -07 000000486 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 23:24:08.418 -07 000000486 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1629 ms
17-03-17 23:24:08.418 -07 000000486 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:24:08.418 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:24:08.418 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:24:08.418 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:24:08.418 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:24:08.418 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:24:08.418 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:24:08.418 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:24:08.418 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:24:08.428 -07 000000501 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:24:08.428 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:24:08.428 -07 000000501 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 23:24:08.428 -07 000000501 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 23:24:08.438 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:24:08.478 -07 000000593 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:24:08.678 -07 000000623 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:24:08.678 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:24:08.678 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:24:08.678 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) start.
17-03-17 23:24:08.718 -07 000000462 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:24:08.718 -07 000000478 INF: FPGA: Recv CAMSNAP
17-03-17 23:24:08.718 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 23:24:08.798 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 23:24:08.798 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:24:08.798 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:24:08.798 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 23:24:08.818 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:24:08.818 -07 000000502 INF: Autofocus start
17-03-17 23:24:08.818 -07 000000502 INF: MeasureProfile start
17-03-17 23:24:08.818 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:24:08.828 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:24:08.828 -07 000000429 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:24:08.838 -07 000000502 INF: MeasureProfile done
17-03-17 23:24:08.838 -07 000000502 INF: X=0  Z correction [um]=-0.0713522
17-03-17 23:24:08.838 -07 000000502 INF: Autofocus finished
17-03-17 23:24:09.028 -07 000000576 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:24:09.028 -07 000000429 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-17 23:24:09.028 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.35009765625, Z-position -0.173753524394161. ----------
17-03-17 23:24:09.038 -07 000000610 INF: Cycle	75	Tile	16	Exposure Settings		A	474	G	228	T	228	C	474
17-03-17 23:24:09.038 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36451, sync = True, waitForSettling = True)
17-03-17 23:24:09.038 -07 000000610 INF: Z Motor: Moving to -0.166862 mm, started at -0.173754 mm, distance = 6.89 um
17-03-17 23:24:09.038 -07 000000610 INF: FPGA: Xmit ZDACW 36451\n [Z Motor]
17-03-17 23:24:09.038 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 23:24:09.048 -07 000000610 INF: FPGA: 'ZDACW 36451' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:24:09.048 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:24:09.048 -07 000000475 INF: FPGA: Recv ZDACR 36451
17-03-17 23:24:09.058 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:09.058 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:24:09.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:09.208 -07 000000502 INF: FPGA: Recv ZSGSRD 35267
17-03-17 23:24:09.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:24:09.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:09.218 -07 000000480 INF: FPGA: Recv ZSGSRD 35263
17-03-17 23:24:09.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:09.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:09.228 -07 000000593 INF: FPGA: Recv ZSGSRD 35261
17-03-17 23:24:09.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:09.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:09.238 -07 000000623 INF: FPGA: Recv ZSGSRD 35267
17-03-17 23:24:09.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:09.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:09.248 -07 000000478 INF: FPGA: Recv ZSGSRD 35264
17-03-17 23:24:09.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:09.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:09.258 -07 000000462 INF: FPGA: Recv ZSGSRD 35264
17-03-17 23:24:09.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:09.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:09.268 -07 000000429 INF: FPGA: Recv ZSGSRD 35267
17-03-17 23:24:09.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:24:09.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:09.278 -07 000000482 INF: FPGA: Recv ZSGSRD 35263
17-03-17 23:24:09.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:09.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:09.288 -07 000000502 INF: FPGA: Recv ZSGSRD 35263
17-03-17 23:24:09.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:09.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:09.298 -07 000000382 INF: FPGA: Recv ZSGSRD 35262
17-03-17 23:24:09.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:09.308 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:24:09.308 -07 000000593 INF: FPGA: Recv ZPIEZORD 31018
17-03-17 23:24:09.318 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:09.318 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.562 V. Piezo Error = -9.4 V.
17-03-17 23:24:09.318 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.9 um, Read 10 ADC samples: Avg = 35264 (-166.0 uncal um), Error = 0.9 uncal um, Median = 35264 (-166.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35261 (-166.0 uncal um), Max = 35267 (-166.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 23:24:09.318 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35264, posNoise = 3, negNoise = 3
17-03-17 23:24:09.318 -07 000000610 INF: Z Motor: After move to -0.166862, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:24:09.318 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 23:24:09.318 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:24:09.318 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:24:09.318 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:24:09.318 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:24:09.318 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:24:09.318 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:24:09.318 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:24:09.318 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:24:09.318 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:24:09.318 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:24:09.318 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:24:09.328 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:24:09.328 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 23:24:09.328 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:24:09.328 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:24:09.328 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:24:09.338 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 23:24:09.338 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 23:24:09.348 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 23:24:09.348 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:24:09.348 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 474 474 228 228 36628 150\n [Camera]
17-03-17 23:24:09.548 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:24:09.808 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 75, FrontChillerTemperature: 3.993549,
17-03-17 23:24:10.018 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 666
17-03-17 23:24:10.018 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 666
17-03-17 23:24:10.028 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:24:10.028 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 666
17-03-17 23:24:10.028 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 666
17-03-17 23:24:10.028 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:24:10.028 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:24:10.028 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 23:24:10.028 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:24:10.028 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-17 23:24:10.218 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36628 859
17-03-17 23:24:10.368 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1009
17-03-17 23:24:10.418 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 23:24:10.418 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 23:24:10.418 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 23:24:10.418 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 23:24:10.418 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:24:10.418 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:24:10.418 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:24:10.418 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 23:24:10.418 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 23:24:10.428 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 23:24:10.598 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1237
17-03-17 23:24:10.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1237
17-03-17 23:24:10.598 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:24:10.598 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1237
17-03-17 23:24:10.598 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1237
17-03-17 23:24:10.598 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:24:10.718 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:24:10.718 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-17 23:24:10.718 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:24:10.718 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 23:24:10.788 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1429
17-03-17 23:24:10.788 -07 000000551 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:24:10.788 -07 000000610 INF: FPGA: 'CAMDBLSNAP 474 474 228 228 36628 150' command took 2 ms to send, 1432 ms to get response, and 1439 ms overall
17-03-17 23:24:10.788 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:24:10.788 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.35009765625, Z-Position -0.166866768978193. ------
17-03-17 23:24:10.788 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:24:10.788 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17335 mm
17-03-17 23:24:10.788 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:24:10.788 -07 000000478 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 23:24:10.788 -07 000000478 INF: Y Motor: Moving to 73.1926 mm, started at 72.3501 mm, delta = 0.8425 mm
17-03-17 23:24:10.798 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:24:10.798 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:24:10.798 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:24:10.798 -07 000000475 INF: Z Motor: Entering MoveAbsStepped (DAC = 37867, sync = True, waitForSettling = False)
17-03-17 23:24:10.798 -07 000000475 INF: Z Motor: Moving to -0.173344 mm, started at -0.166867 mm, distance = -6.48 um
17-03-17 23:24:10.798 -07 000000551 INF: FPGA: Recv YRDPOS 148173
17-03-17 23:24:10.808 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:24:10.808 -07 000000478 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:24:10.808 -07 000000478 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:24:10.808 -07 000000478 INF: Y Motor: Moving 1348 steps-27
17-03-17 23:24:10.808 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:24:10.818 -07 000000475 INF: FPGA: Xmit ZDACW 37867\n [Z Motor]
17-03-17 23:24:10.818 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 23:24:10.828 -07 000000478 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:24:10.828 -07 000000475 INF: FPGA: 'ZDACW 37867' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 23:24:10.838 -07 000000475 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:24:10.838 -07 000000551 INF: FPGA: Recv ZDACR 37867
17-03-17 23:24:10.848 -07 000000475 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:24:10.848 -07 000000475 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-17 23:24:11.008 -07 000000482 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:24:11.008 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 23:24:11.108 -07 000000462 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 23:24:11.108 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 23:24:11.108 -07 000000462 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 23:24:11.108 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:24:11.108 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 23:24:11.108 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:24:11.118 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:24:11.118 -07 000000462 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 521 ms.
17-03-17 23:24:11.118 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:24:11.118 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 525 ms.
17-03-17 23:24:11.208 -07 000000486 INF: FPGA: Recv YMVTILE
17-03-17 23:24:11.208 -07 000000478 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 400 ms overall
17-03-17 23:24:11.248 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:24:11.248 -07 000000502 INF: FPGA: Recv YRDPOS 149865
17-03-17 23:24:11.258 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:24:11.258 -07 000000478 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:24:11.258 -07 000000478 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-17 23:24:11.258 -07 000000478 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.843 mm, average velocity = 2.106 mm/sec
17-03-17 23:24:12.068 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:24:12.068 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 74. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1192, R2=1246, Total=2438. Warn if over 250 bubbles per interval.
17-03-17 23:24:12.208 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:24:12.208 -07 000000501 INF: FPGA: Recv YRDPOS 149865
17-03-17 23:24:12.218 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:12.218 -07 000000478 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:24:12.238 -07 000000478 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:24:12.238 -07 000000478 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:24:12.238 -07 000000478 INF: Y Motor: Moved to 73.1763 after 1446 ms (table move)
17-03-17 23:24:12.238 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173344 mm (DAC = 37867)
17-03-17 23:24:12.248 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:12.248 -07 000000429 INF: FPGA: Recv ZSGSRD 36276
17-03-17 23:24:12.258 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:24:12.258 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:12.258 -07 000000551 INF: FPGA: Recv ZSGSRD 36276
17-03-17 23:24:12.268 -07 000000576 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:12.268 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:12.268 -07 000000482 INF: FPGA: Recv ZSGSRD 36268
17-03-17 23:24:12.278 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:12.278 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:12.278 -07 000000502 INF: FPGA: Recv ZSGSRD 36274
17-03-17 23:24:12.288 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:12.288 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:12.288 -07 000000462 INF: FPGA: Recv ZSGSRD 36273
17-03-17 23:24:12.298 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:12.298 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:12.298 -07 000000486 INF: FPGA: Recv ZSGSRD 36276
17-03-17 23:24:12.308 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:12.308 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:12.308 -07 000000382 INF: FPGA: Recv ZSGSRD 36276
17-03-17 23:24:12.318 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:12.318 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:12.318 -07 000000502 INF: FPGA: Recv ZSGSRD 36280
17-03-17 23:24:12.328 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:12.328 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:12.328 -07 000000462 INF: FPGA: Recv ZSGSRD 36274
17-03-17 23:24:12.338 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:12.338 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:12.338 -07 000000486 INF: FPGA: Recv ZSGSRD 36268
17-03-17 23:24:12.348 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:12.348 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:24:12.348 -07 000000623 INF: FPGA: Recv ZPIEZORD 32396
17-03-17 23:24:12.358 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:12.358 -07 000000576 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.778 V. Piezo Error = -8.6 V.
17-03-17 23:24:12.358 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.3 um, Read 10 ADC samples: Avg = 36274 (-172.5 uncal um), Error = 0.9 uncal um, Median = 36275 (-172.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36268 (-172.4 uncal um), Max = 36280 (-172.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:24:12.358 -07 000000576 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36274, posNoise = 6, negNoise = 6
17-03-17 23:24:12.358 -07 000000576 INF: Z Motor: After move to -0.173344, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:24:12.358 -07 000000576 INF: Z Motor: Settle wait time = 1448 ms, measure time = 111 ms (allowed 150 ms), total time = 1559 ms
17-03-17 23:24:12.358 -07 000000576 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 23:24:12.398 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1602 ms
17-03-17 23:24:12.398 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:24:12.398 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:24:12.398 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:24:12.398 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:24:12.398 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:24:12.398 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:24:12.398 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:24:12.398 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 23:24:12.398 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:24:12.408 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:24:12.408 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:24:12.408 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 23:24:12.408 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 23:24:12.418 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:24:12.458 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:24:12.658 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:24:12.658 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:24:12.658 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:24:12.658 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1094749800, 0x0, 559484976) start.
17-03-17 23:24:12.698 -07 000000551 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:24:12.698 -07 000000593 INF: FPGA: Recv CAMSNAP
17-03-17 23:24:12.698 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 285 ms overall
17-03-17 23:24:12.778 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1094749800, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 23:24:12.778 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:24:12.778 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 23:24:12.778 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 23:24:12.798 -07 000000433 INF: Autofocus start
17-03-17 23:24:12.798 -07 000000433 INF: MeasureProfile start
17-03-17 23:24:12.798 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:24:12.798 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:24:12.808 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:24:12.808 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:24:12.808 -07 000000433 INF: MeasureProfile done
17-03-17 23:24:12.808 -07 000000433 INF: X=48  Z correction [um]=0.1739867
17-03-17 23:24:12.808 -07 000000433 INF: Autofocus finished
17-03-17 23:24:13.008 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:24:13.008 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:24:13.008 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.173355223241372. ----------
17-03-17 23:24:13.008 -07 000000610 INF: Cycle	75	Tile	17	Exposure Settings		A	474	G	228	T	228	C	474
17-03-17 23:24:13.018 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36418, sync = True, waitForSettling = True)
17-03-17 23:24:13.018 -07 000000610 INF: Z Motor: Moving to -0.166711 mm, started at -0.173355 mm, distance = 6.64 um
17-03-17 23:24:13.018 -07 000000610 INF: FPGA: Xmit ZDACW 36418\n [Z Motor]
17-03-17 23:24:13.018 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 23:24:13.028 -07 000000610 INF: FPGA: 'ZDACW 36418' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:24:13.028 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:24:13.028 -07 000000462 INF: FPGA: Recv ZDACR 36418
17-03-17 23:24:13.038 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:13.038 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:24:13.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:13.188 -07 000000501 INF: FPGA: Recv ZSGSRD 35249
17-03-17 23:24:13.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:24:13.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:13.198 -07 000000576 INF: FPGA: Recv ZSGSRD 35242
17-03-17 23:24:13.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:13.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:13.208 -07 000000475 INF: FPGA: Recv ZSGSRD 35238
17-03-17 23:24:13.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:13.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:13.218 -07 000000480 INF: FPGA: Recv ZSGSRD 35245
17-03-17 23:24:13.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:13.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:13.228 -07 000000480 INF: FPGA: Recv ZSGSRD 35238
17-03-17 23:24:13.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:13.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:13.258 -07 000000478 INF: FPGA: Recv ZSGSRD 35241
17-03-17 23:24:13.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 12 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 23:24:13.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:13.268 -07 000000576 INF: FPGA: Recv ZSGSRD 35244
17-03-17 23:24:13.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:13.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:13.278 -07 000000475 INF: FPGA: Recv ZSGSRD 35236
17-03-17 23:24:13.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:13.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:13.288 -07 000000551 INF: FPGA: Recv ZSGSRD 35245
17-03-17 23:24:13.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:13.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:13.298 -07 000000502 INF: FPGA: Recv ZSGSRD 35238
17-03-17 23:24:13.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:13.308 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:24:13.308 -07 000000576 INF: FPGA: Recv ZPIEZORD 31018
17-03-17 23:24:13.318 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:13.318 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.557 V. Piezo Error = -9.3 V.
17-03-17 23:24:13.318 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.7 um, Read 10 ADC samples: Avg = 35242 (-165.9 uncal um), Error = 0.9 uncal um, Median = 35242 (-165.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35236 (-165.8 uncal um), Max = 35249 (-165.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:24:13.318 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35242, posNoise = 7, negNoise = 6
17-03-17 23:24:13.318 -07 000000610 INF: Z Motor: After move to -0.166711, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:24:13.318 -07 000000610 INF: Z Motor: MoveAbsStepped took 299 ms)
17-03-17 23:24:13.318 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:24:13.318 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:24:13.318 -07 000000593 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:24:13.318 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:24:13.318 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:24:13.318 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:24:13.318 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:24:13.318 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:24:13.318 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:24:13.318 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:24:13.318 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:24:13.318 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:24:13.328 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:24:13.328 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:24:13.328 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:24:13.328 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:24:13.338 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 23:24:13.338 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 23:24:13.338 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 23:24:13.338 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 23:24:13.338 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 474 474 228 228 36595 150\n [Camera]
17-03-17 23:24:13.538 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:24:14.018 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 666
17-03-17 23:24:14.018 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 666
17-03-17 23:24:14.018 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:24:14.018 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 666
17-03-17 23:24:14.018 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 666
17-03-17 23:24:14.018 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:24:14.018 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:24:14.018 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 23:24:14.028 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:24:14.028 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 23:24:14.208 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36595 859
17-03-17 23:24:14.358 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1009
17-03-17 23:24:14.398 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 23:24:14.398 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 23:24:14.398 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:24:14.408 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:24:14.408 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 23:24:14.408 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 23:24:14.408 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:24:14.408 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:24:14.408 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 23:24:14.418 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 23:24:14.588 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1237
17-03-17 23:24:14.588 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1237
17-03-17 23:24:14.588 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:24:14.588 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1237
17-03-17 23:24:14.588 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1237
17-03-17 23:24:14.588 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:24:14.588 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:24:14.588 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 23:24:14.598 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:24:14.598 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 23:24:14.778 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1429
17-03-17 23:24:14.778 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:24:14.778 -07 000000610 INF: FPGA: 'CAMDBLSNAP 474 474 228 228 36595 150' command took 2 ms to send, 1426 ms to get response, and 1437 ms overall
17-03-17 23:24:14.778 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:24:14.778 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17626953125, Z-Position -0.166725436311075. ------
17-03-17 23:24:14.788 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17313 mm
17-03-17 23:24:14.788 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:24:14.788 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:24:14.788 -07 000000551 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 23:24:14.788 -07 000000551 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-17 23:24:14.788 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:24:14.788 -07 000000593 INF: Z Motor: Entering MoveAbsStepped (DAC = 37821, sync = True, waitForSettling = False)
17-03-17 23:24:14.788 -07 000000593 INF: Z Motor: Moving to -0.173133 mm, started at -0.166725 mm, distance = -6.41 um
17-03-17 23:24:14.798 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:24:14.798 -07 000000593 INF: FPGA: Xmit ZDACW 37821\n [Z Motor]
17-03-17 23:24:14.798 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 23:24:14.808 -07 000000593 INF: FPGA: 'ZDACW 37821' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 23:24:14.808 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:24:14.808 -07 000000480 INF: FPGA: Recv YRDPOS 149865
17-03-17 23:24:14.818 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 23:24:14.818 -07 000000551 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:24:14.818 -07 000000551 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:24:14.818 -07 000000551 INF: Y Motor: Moving 1354 steps-33
17-03-17 23:24:14.818 -07 000000623 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:24:14.828 -07 000000593 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:24:14.828 -07 000000480 INF: FPGA: Recv ZDACR 37821
17-03-17 23:24:14.838 -07 000000593 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:24:14.838 -07 000000551 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:24:14.838 -07 000000593 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet))
17-03-17 23:24:14.988 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 23:24:14.988 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 23:24:14.988 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:24:14.998 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 23:24:14.998 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 23:24:14.998 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:24:14.998 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:24:14.998 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms.
17-03-17 23:24:14.998 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:24:15.008 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 23:24:15.018 -07 000000433 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:24:15.018 -07 000000623 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 223 ms overall
17-03-17 23:24:15.168 -07 000000429 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 75, FrontChillerTemperature: 3.990831,
17-03-17 23:24:15.208 -07 000000486 INF: FPGA: Recv YMVTILE
17-03-17 23:24:15.208 -07 000000551 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-17 23:24:15.248 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:24:15.248 -07 000000486 INF: FPGA: Recv YRDPOS 151569
17-03-17 23:24:15.258 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:24:15.258 -07 000000551 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:24:15.258 -07 000000551 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 23:24:15.258 -07 000000551 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.846 mm, average velocity = 2.126 mm/sec
17-03-17 23:24:16.208 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:24:16.208 -07 000000623 INF: FPGA: Recv YRDPOS 151569
17-03-17 23:24:16.218 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:24:16.218 -07 000000551 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:24:16.228 -07 000000551 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:24:16.228 -07 000000551 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:24:16.228 -07 000000551 INF: Y Motor: Moved to 74.0083 after 1442 ms (table move)
17-03-17 23:24:16.238 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173133 mm (DAC = 37821)
17-03-17 23:24:16.238 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:16.238 -07 000000475 INF: FPGA: Recv ZSGSRD 36247
17-03-17 23:24:16.248 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:24:16.248 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:16.248 -07 000000433 INF: FPGA: Recv ZSGSRD 36240
17-03-17 23:24:16.258 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:16.258 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:16.258 -07 000000462 INF: FPGA: Recv ZSGSRD 36238
17-03-17 23:24:16.268 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:16.268 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:16.268 -07 000000623 INF: FPGA: Recv ZSGSRD 36244
17-03-17 23:24:16.278 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:16.278 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:16.278 -07 000000593 INF: FPGA: Recv ZSGSRD 36246
17-03-17 23:24:16.288 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:16.288 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:16.288 -07 000000501 INF: FPGA: Recv ZSGSRD 36251
17-03-17 23:24:16.298 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:16.298 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:16.298 -07 000000502 INF: FPGA: Recv ZSGSRD 36245
17-03-17 23:24:16.308 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:16.308 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:16.308 -07 000000475 INF: FPGA: Recv ZSGSRD 36239
17-03-17 23:24:16.318 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:16.318 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:16.318 -07 000000482 INF: FPGA: Recv ZSGSRD 36237
17-03-17 23:24:16.328 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:16.328 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:16.328 -07 000000429 INF: FPGA: Recv ZSGSRD 36235
17-03-17 23:24:16.338 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:16.338 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:24:16.338 -07 000000478 INF: FPGA: Recv ZPIEZORD 32370
17-03-17 23:24:16.348 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:16.348 -07 000000576 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.771 V. Piezo Error = -8.6 V.
17-03-17 23:24:16.348 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.1 um, Read 10 ADC samples: Avg = 36242 (-172.3 uncal um), Error = 0.9 uncal um, Median = 36242 (-172.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36235 (-172.2 uncal um), Max = 36251 (-172.3 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 23:24:16.348 -07 000000576 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36242, posNoise = 9, negNoise = 7
17-03-17 23:24:16.348 -07 000000576 INF: Z Motor: After move to -0.173133, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:24:16.348 -07 000000576 INF: Z Motor: Settle wait time = 1447 ms, measure time = 107 ms (allowed 150 ms), total time = 1554 ms
17-03-17 23:24:16.348 -07 000000576 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 23:24:16.398 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-17 23:24:16.398 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:24:16.398 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:24:16.398 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:24:16.408 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:24:16.408 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:24:16.408 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:24:16.408 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:24:16.408 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:24:16.408 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:24:16.408 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:24:16.408 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:24:16.418 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 23:24:16.418 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 23:24:16.418 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:24:16.468 -07 000000551 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:24:16.668 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:24:16.668 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:24:16.668 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:24:16.778 -07 000000551 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:24:16.778 -07 000000551 INF: FPGA: Recv CAMSNAP
17-03-17 23:24:16.778 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 352 ms to get response, and 356 ms overall
17-03-17 23:24:16.778 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1113831184, 0x0, 559484976) start.
17-03-17 23:24:16.888 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1113831184, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 23:24:16.888 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:24:16.888 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:24:16.888 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 226 ms.
17-03-17 23:24:16.978 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:24:16.978 -07 000000433 INF: Autofocus start
17-03-17 23:24:16.978 -07 000000433 INF: MeasureProfile start
17-03-17 23:24:16.978 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:24:16.988 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:24:16.988 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:24:16.998 -07 000000433 INF: MeasureProfile done
17-03-17 23:24:16.998 -07 000000433 INF: X=-16  Z correction [um]=-0.1496812
17-03-17 23:24:16.998 -07 000000433 INF: Autofocus finished
17-03-17 23:24:17.068 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:24:17.068 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 74. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1192, R2=1246, Total=2438. Warn if over 250 bubbles per interval.
17-03-17 23:24:17.188 -07 000000623 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:24:17.188 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:24:17.188 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.173149648452836. ----------
17-03-17 23:24:17.188 -07 000000610 INF: Cycle	75	Tile	18	Exposure Settings		A	474	G	228	T	228	C	474
17-03-17 23:24:17.198 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36300, sync = True, waitForSettling = True)
17-03-17 23:24:17.198 -07 000000610 INF: Z Motor: Moving to -0.166171 mm, started at -0.173150 mm, distance = 6.98 um
17-03-17 23:24:17.198 -07 000000610 INF: FPGA: Xmit ZDACW 36300\n [Z Motor]
17-03-17 23:24:17.198 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 23:24:17.208 -07 000000610 INF: FPGA: 'ZDACW 36300' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:17.208 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:24:17.208 -07 000000482 INF: FPGA: Recv ZDACR 36300
17-03-17 23:24:17.218 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:17.218 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:24:17.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:17.368 -07 000000502 INF: FPGA: Recv ZSGSRD 35157
17-03-17 23:24:17.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:17.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:17.378 -07 000000462 INF: FPGA: Recv ZSGSRD 35165
17-03-17 23:24:17.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:17.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:17.388 -07 000000593 INF: FPGA: Recv ZSGSRD 35158
17-03-17 23:24:17.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:17.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:17.398 -07 000000551 INF: FPGA: Recv ZSGSRD 35159
17-03-17 23:24:17.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:17.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:17.408 -07 000000482 INF: FPGA: Recv ZSGSRD 35160
17-03-17 23:24:17.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:17.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:17.418 -07 000000486 INF: FPGA: Recv ZSGSRD 35158
17-03-17 23:24:17.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:17.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:17.428 -07 000000382 INF: FPGA: Recv ZSGSRD 35155
17-03-17 23:24:17.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:17.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:17.438 -07 000000551 INF: FPGA: Recv ZSGSRD 35161
17-03-17 23:24:17.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:17.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:17.448 -07 000000576 INF: FPGA: Recv ZSGSRD 35159
17-03-17 23:24:17.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:17.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:17.458 -07 000000433 INF: FPGA: Recv ZSGSRD 35159
17-03-17 23:24:17.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:17.468 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:24:17.468 -07 000000475 INF: FPGA: Recv ZPIEZORD 30911
17-03-17 23:24:17.478 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:17.478 -07 000000610 INF: Z Motor: Piezo is near 46.0 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.539 V. Piezo Error = -9.4 V.
17-03-17 23:24:17.478 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.2 um, Read 10 ADC samples: Avg = 35159 (-165.3 uncal um), Error = 0.8 uncal um, Median = 35159 (-165.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35155 (-165.3 uncal um), Max = 35165 (-165.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:24:17.478 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35159, posNoise = 6, negNoise = 4
17-03-17 23:24:17.478 -07 000000610 INF: Z Motor: After move to -0.166171, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:24:17.478 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 23:24:17.478 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:24:17.478 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:24:17.478 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:24:17.478 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:24:17.478 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:24:17.478 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:24:17.478 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:24:17.478 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:24:17.478 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 23:24:17.478 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:24:17.478 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:24:17.478 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:24:17.478 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 23:24:17.478 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:24:17.478 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 23:24:17.488 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:24:17.498 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 23:24:17.498 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 23:24:17.498 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 23:24:17.498 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 23:24:17.498 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 474 474 228 228 36477 150\n [Camera]
17-03-17 23:24:17.698 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:24:18.178 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 666
17-03-17 23:24:18.178 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 666
17-03-17 23:24:18.178 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:24:18.178 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 666
17-03-17 23:24:18.178 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 666
17-03-17 23:24:18.178 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:24:18.178 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:24:18.178 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 583729424, 0x0, 391868352) start.
17-03-17 23:24:18.178 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:24:18.178 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 23:24:18.368 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36477 859
17-03-17 23:24:18.518 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1009
17-03-17 23:24:18.568 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 583729424, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 23:24:18.568 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 23:24:18.568 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:24:18.578 -07 000000593 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 23:24:18.578 -07 000000593 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 23:24:18.578 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:24:18.578 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:24:18.578 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 23:24:18.578 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:24:18.588 -07 000000593 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 23:24:18.748 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1237
17-03-17 23:24:18.748 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1237
17-03-17 23:24:18.748 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:24:18.748 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1237
17-03-17 23:24:18.748 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1237
17-03-17 23:24:18.748 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:24:18.858 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:24:18.858 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 23:24:18.858 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:24:18.858 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1124101960, 0x0, 391868352) start.
17-03-17 23:24:18.938 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP 1430
17-03-17 23:24:18.938 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:24:18.938 -07 000000610 INF: FPGA: 'CAMDBLSNAP 474 474 228 228 36477 150' command took 4 ms to send, 1423 ms to get response, and 1437 ms overall
17-03-17 23:24:18.938 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:24:18.938 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00830078125, Z-Position -0.166192226703308. ------
17-03-17 23:24:18.938 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:24:18.938 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17263 mm
17-03-17 23:24:18.938 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:24:18.948 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 37710, sync = True, waitForSettling = False)
17-03-17 23:24:18.948 -07 000000382 INF: Z Motor: Moving to -0.172625 mm, started at -0.166192 mm, distance = -6.43 um
17-03-17 23:24:18.948 -07 000000478 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 23:24:18.948 -07 000000478 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-17 23:24:18.948 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:24:18.948 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 4 ms overall
17-03-17 23:24:18.948 -07 000000382 INF: FPGA: Xmit ZDACW 37710\n [Z Motor]
17-03-17 23:24:18.948 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 23:24:18.958 -07 000000382 INF: FPGA: 'ZDACW 37710' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:24:18.958 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:24:18.958 -07 000000462 INF: FPGA: Recv ZDACR 37710
17-03-17 23:24:18.968 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:24:18.968 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:18.968 -07 000000382 INF: Z Motor: MoveAbsStepped took 18 ms (did NOT wait for settling yet))
17-03-17 23:24:18.978 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:24:18.978 -07 000000382 INF: FPGA: Recv YRDPOS 151570
17-03-17 23:24:18.988 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 37 ms overall
17-03-17 23:24:18.988 -07 000000478 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:24:18.988 -07 000000478 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:24:18.988 -07 000000478 INF: Y Motor: Moving 1350 steps-29
17-03-17 23:24:18.988 -07 000000478 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:24:19.168 -07 000000382 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:24:19.168 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 219 ms overall
17-03-17 23:24:19.238 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 23:24:19.238 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 23:24:19.238 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:24:19.238 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:24:19.248 -07 000000501 INF: Camera: sBCa_ReadImage(785074288, 1124101960, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 23:24:19.248 -07 000000501 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 23:24:19.248 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:24:19.248 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 498 ms.
17-03-17 23:24:19.248 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:24:19.248 -07 000000501 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 505 ms.
17-03-17 23:24:19.368 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 23:24:19.368 -07 000000478 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 372 ms to get response, and 378 ms overall
17-03-17 23:24:19.388 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:24:19.398 -07 000000576 INF: FPGA: Recv YRDPOS 153256
17-03-17 23:24:19.398 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 23:24:19.398 -07 000000478 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:24:19.398 -07 000000478 INF: Y Motor: Position error before settling (table move) = -42 encoder counts (-0.021 mm)
17-03-17 23:24:19.398 -07 000000478 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.844 mm, average velocity = 2.234 mm/sec
17-03-17 23:24:20.348 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:24:20.348 -07 000000501 INF: FPGA: Recv YRDPOS 153256
17-03-17 23:24:20.358 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:24:20.358 -07 000000478 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:24:20.368 -07 000000478 INF: Y Motor: After move to 74.852608, error = -0.020576, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:24:20.368 -07 000000478 INF: Y Motor: Position error after settling (table move) = -42 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:24:20.368 -07 000000478 INF: Y Motor: Moved to 74.8320 after 1425 ms (table move)
17-03-17 23:24:20.378 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172625 mm (DAC = 37710)
17-03-17 23:24:20.378 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:20.378 -07 000000462 INF: FPGA: Recv ZSGSRD 36164
17-03-17 23:24:20.388 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:24:20.388 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:20.388 -07 000000593 INF: FPGA: Recv ZSGSRD 36163
17-03-17 23:24:20.398 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:20.398 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:20.398 -07 000000482 INF: FPGA: Recv ZSGSRD 36156
17-03-17 23:24:20.408 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:20.408 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:20.408 -07 000000551 INF: FPGA: Recv ZSGSRD 36161
17-03-17 23:24:20.418 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:20.418 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:20.418 -07 000000501 INF: FPGA: Recv ZSGSRD 36155
17-03-17 23:24:20.428 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:20.428 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:20.428 -07 000000593 INF: FPGA: Recv ZSGSRD 36161
17-03-17 23:24:20.438 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:20.438 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:20.438 -07 000000482 INF: FPGA: Recv ZSGSRD 36165
17-03-17 23:24:20.448 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:20.448 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:20.448 -07 000000480 INF: FPGA: Recv ZSGSRD 36168
17-03-17 23:24:20.458 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:20.458 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:20.458 -07 000000501 INF: FPGA: Recv ZSGSRD 36165
17-03-17 23:24:20.468 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:20.468 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:20.468 -07 000000576 INF: FPGA: Recv ZSGSRD 36160
17-03-17 23:24:20.478 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:20.478 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:24:20.478 -07 000000433 INF: FPGA: Recv ZPIEZORD 32276
17-03-17 23:24:20.488 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:20.488 -07 000000502 INF: Z Motor: Piezo is near 49.0 V (nominally 0 to 100 V), expect near 57.5 V, since DAC is at 5.754 V. Piezo Error = -8.6 V.
17-03-17 23:24:20.488 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.6 um, Read 10 ADC samples: Avg = 36162 (-171.8 uncal um), Error = 0.9 uncal um, Median = 36162 (-171.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36155 (-171.7 uncal um), Max = 36168 (-171.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 23:24:20.488 -07 000000502 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36162, posNoise = 6, negNoise = 7
17-03-17 23:24:20.488 -07 000000502 INF: Z Motor: After move to -0.172625, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:24:20.488 -07 000000502 INF: Z Motor: Settle wait time = 1430 ms, measure time = 108 ms (allowed 150 ms), total time = 1538 ms
17-03-17 23:24:20.488 -07 000000502 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 23:24:20.538 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-17 23:24:20.538 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:24:20.538 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 75, FrontChillerTemperature: 3.977204,
17-03-17 23:24:20.538 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:24:20.538 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:24:20.548 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:24:20.548 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:24:20.548 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:24:20.548 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:24:20.548 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:24:20.548 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:24:20.548 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:24:20.548 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:24:20.558 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 23:24:20.558 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 23:24:20.568 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:24:20.608 -07 000000433 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:24:20.808 -07 000000551 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:24:20.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:24:20.808 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:24:20.808 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 596199184, 0x0, 559484976) start.
17-03-17 23:24:20.848 -07 000000551 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:24:20.848 -07 000000478 INF: FPGA: Recv CAMSNAP
17-03-17 23:24:20.848 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 291 ms overall
17-03-17 23:24:20.928 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 596199184, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 23:24:20.928 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:24:20.928 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:24:20.928 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 23:24:20.948 -07 000000486 INF: Autofocus start
17-03-17 23:24:20.948 -07 000000486 INF: MeasureProfile start
17-03-17 23:24:20.948 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:24:20.948 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:24:20.958 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:24:20.958 -07 000000593 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:24:20.958 -07 000000486 INF: MeasureProfile done
17-03-17 23:24:20.958 -07 000000486 INF: X=-32  Z correction [um]=-0.2344
17-03-17 23:24:20.958 -07 000000486 INF: Autofocus finished
17-03-17 23:24:21.158 -07 000000551 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:24:21.158 -07 000000593 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 203 ms overall
17-03-17 23:24:21.158 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83203125, Z-position -0.172635711481495. ----------
17-03-17 23:24:21.158 -07 000000610 INF: Cycle	75	Tile	19	Exposure Settings		A	474	G	228	T	228	C	474
17-03-17 23:24:21.168 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36171, sync = True, waitForSettling = True)
17-03-17 23:24:21.168 -07 000000610 INF: Z Motor: Moving to -0.165580 mm, started at -0.172636 mm, distance = 7.06 um
17-03-17 23:24:21.168 -07 000000610 INF: FPGA: Xmit ZDACW 36171\n [Z Motor]
17-03-17 23:24:21.168 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 23:24:21.178 -07 000000610 INF: FPGA: 'ZDACW 36171' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:21.178 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:24:21.178 -07 000000480 INF: FPGA: Recv ZDACR 36171
17-03-17 23:24:21.188 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:21.188 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:24:21.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:21.338 -07 000000593 INF: FPGA: Recv ZSGSRD 35067
17-03-17 23:24:21.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:24:21.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:21.348 -07 000000623 INF: FPGA: Recv ZSGSRD 35062
17-03-17 23:24:21.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:21.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:21.358 -07 000000486 INF: FPGA: Recv ZSGSRD 35069
17-03-17 23:24:21.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:21.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:21.368 -07 000000576 INF: FPGA: Recv ZSGSRD 35064
17-03-17 23:24:21.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:21.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:21.378 -07 000000551 INF: FPGA: Recv ZSGSRD 35066
17-03-17 23:24:21.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:21.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:21.388 -07 000000623 INF: FPGA: Recv ZSGSRD 35064
17-03-17 23:24:21.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:21.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:21.398 -07 000000429 INF: FPGA: Recv ZSGSRD 35069
17-03-17 23:24:21.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:21.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:21.408 -07 000000576 INF: FPGA: Recv ZSGSRD 35073
17-03-17 23:24:21.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:21.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:21.418 -07 000000382 INF: FPGA: Recv ZSGSRD 35061
17-03-17 23:24:21.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:21.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:21.428 -07 000000433 INF: FPGA: Recv ZSGSRD 35066
17-03-17 23:24:21.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:21.438 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:24:21.438 -07 000000551 INF: FPGA: Recv ZPIEZORD 30825
17-03-17 23:24:21.448 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:21.448 -07 000000610 INF: Z Motor: Piezo is near 45.9 V (nominally 0 to 100 V), expect near 55.2 V, since DAC is at 5.519 V. Piezo Error = -9.3 V.
17-03-17 23:24:21.448 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.6 um, Read 10 ADC samples: Avg = 35066 (-164.7 uncal um), Error = 0.8 uncal um, Median = 35066 (-164.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35061 (-164.7 uncal um), Max = 35073 (-164.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:24:21.448 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35066, posNoise = 7, negNoise = 5
17-03-17 23:24:21.448 -07 000000610 INF: Z Motor: After move to -0.165580, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:24:21.448 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 23:24:21.448 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:24:21.448 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:24:21.448 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:24:21.448 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:24:21.448 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:24:21.448 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:24:21.448 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:24:21.448 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:24:21.448 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:24:21.448 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:24:21.448 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:24:21.448 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:24:21.448 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:24:21.448 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:24:21.458 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:24:21.458 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:24:21.468 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-17 23:24:21.468 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 23:24:21.468 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-17 23:24:21.468 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 23:24:21.468 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 474 474 228 228 36348 150\n [Camera]
17-03-17 23:24:21.668 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:24:22.068 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:24:22.068 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 74. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1192, R2=1246, Total=2438. Warn if over 250 bubbles per interval.
17-03-17 23:24:22.148 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 666
17-03-17 23:24:22.148 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 666
17-03-17 23:24:22.148 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:24:22.148 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 666
17-03-17 23:24:22.148 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 666
17-03-17 23:24:22.148 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:24:22.148 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:24:22.148 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 23:24:22.158 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:24:22.158 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 23:24:22.338 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36348 859
17-03-17 23:24:22.488 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1009
17-03-17 23:24:22.538 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 23:24:22.538 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 382 ms.
17-03-17 23:24:22.538 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:24:22.538 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:24:22.538 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 23:24:22.538 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 23:24:22.538 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:24:22.548 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:24:22.548 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 23:24:22.548 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 23:24:22.718 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1237
17-03-17 23:24:22.718 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1237
17-03-17 23:24:22.718 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:24:22.718 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1237
17-03-17 23:24:22.718 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1237
17-03-17 23:24:22.718 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:24:22.718 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:24:22.718 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 23:24:22.718 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:24:22.718 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 23:24:22.908 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1429
17-03-17 23:24:22.908 -07 000000482 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:24:22.908 -07 000000610 INF: FPGA: 'CAMDBLSNAP 474 474 228 228 36348 150' command took 2 ms to send, 1424 ms to get response, and 1436 ms overall
17-03-17 23:24:23.128 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 23:24:23.128 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 23:24:23.128 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:24:23.128 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 405 ms.
17-03-17 23:24:23.128 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 23:24:23.128 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:24:23.128 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 23:24:23.128 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-17 23:24:23.128 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 23:24:23.128 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:24:23.138 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms.
17-03-17 23:24:23.168 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 23:24:23.178 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 23:24:23.218 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-17 23:24:23.218 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-17 23:24:23.218 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 23:24:23.218 -07 000000482 INF: FPGA: Recv EMCUR 
17-03-17 23:24:23.228 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:24:23.228 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-17 23:24:23.728 -07 000000623 INF: FPGA: Recv EMIN
17-03-17 23:24:23.728 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 492 ms to get response, and 502 ms overall
17-03-17 23:24:23.728 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-17 23:24:23.728 -07 000000502 INF: FPGA: Recv EMCUR 
17-03-17 23:24:23.738 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:24:23.738 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:24:23.738 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83203125, Z-Position -0.165594774974125. ------
17-03-17 23:24:23.738 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:24:23.738 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.14004 mm
17-03-17 23:24:23.738 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:24:23.738 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:24:23.738 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 23:24:23.738 -07 000000382 INF: Y Motor: Moving to 59.9126 mm, started at 74.8320 mm, delta = -14.9194 mm
17-03-17 23:24:23.738 -07 000000593 INF: Z Motor: Entering MoveAbsStepped (DAC = 30591, sync = True, waitForSettling = False)
17-03-17 23:24:23.738 -07 000000593 INF: Z Motor: Moving to -0.140037 mm, started at -0.165595 mm, distance = 25.56 um
17-03-17 23:24:23.748 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:24:23.748 -07 000000593 INF: FPGA: Xmit ZDACW 30591\n [Z Motor]
17-03-17 23:24:23.748 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 23:24:23.758 -07 000000593 INF: FPGA: 'ZDACW 30591' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:24:23.758 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:24:23.758 -07 000000501 INF: FPGA: Recv YRDPOS 153258
17-03-17 23:24:23.768 -07 000000429 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:24:23.768 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 23:24:23.768 -07 000000382 INF: Y Motor: Encoder = 153258 = motor step 119732.8 = 74.8330 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:24:23.768 -07 000000382 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-17 23:24:23.768 -07 000000382 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 23:24:23.778 -07 000000593 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:24:23.778 -07 000000475 INF: FPGA: Recv ZDACR 30591
17-03-17 23:24:23.788 -07 000000593 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:24:23.788 -07 000000593 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-17 23:24:23.788 -07 000000382 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 23:24:23.968 -07 000000475 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:24:23.968 -07 000000429 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 23:24:25.408 -07 000000502 INF: FPGA: Recv YMVTO 122703 23904
17-03-17 23:24:25.408 -07 000000382 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1618 ms to get response, and 1645 ms overall
17-03-17 23:24:25.408 -07 000000382 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 23:24:25.408 -07 000000382 INF: Y Motor: To move from 74.833 to 59.913 (-14.919 mm) should take 23873 steps, but required 23904 steps (14.940 mm). Slippage = 0.019 mm (0.00%).
17-03-17 23:24:25.408 -07 000000382 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1645 ms, distance = 14.919 mm, average velocity = 9.070 mm/sec
17-03-17 23:24:25.918 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 75, FrontChillerTemperature: 3.997626,
17-03-17 23:24:27.068 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:24:27.068 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 74. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1192, R2=1246, Total=2438. Warn if over 250 bubbles per interval.
17-03-17 23:24:28.258 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:24:28.258 -07 000000501 INF: FPGA: Recv YRDPOS 122698
17-03-17 23:24:28.268 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:24:28.268 -07 000000382 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:24:28.298 -07 000000382 INF: Y Motor: After move to 59.912609, error = -0.001476, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:24:28.298 -07 000000382 INF: Y Motor: Position error after settling = -3 encoder counts (-0.001 mm), Delta during settling = -5 counts (-0.002 mm)
17-03-17 23:24:28.298 -07 000000382 INF: Y Motor: Moved to 59.9111 after 4554 ms
17-03-17 23:24:28.298 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.140037 mm (DAC = 30591)
17-03-17 23:24:28.298 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:28.308 -07 000000623 INF: FPGA: Recv ZSGSRD 31087
17-03-17 23:24:28.308 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 23:24:28.308 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:28.308 -07 000000501 INF: FPGA: Recv ZSGSRD 31090
17-03-17 23:24:28.318 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:24:28.318 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:28.318 -07 000000593 INF: FPGA: Recv ZSGSRD 31094
17-03-17 23:24:28.328 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:28.328 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:28.328 -07 000000433 INF: FPGA: Recv ZSGSRD 31088
17-03-17 23:24:28.338 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:28.338 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:28.338 -07 000000382 INF: FPGA: Recv ZSGSRD 31086
17-03-17 23:24:28.348 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:28.348 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:28.348 -07 000000501 INF: FPGA: Recv ZSGSRD 31093
17-03-17 23:24:28.358 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:28.358 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:28.358 -07 000000593 INF: FPGA: Recv ZSGSRD 31094
17-03-17 23:24:28.368 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:28.368 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:28.368 -07 000000480 INF: FPGA: Recv ZSGSRD 31092
17-03-17 23:24:28.378 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:28.378 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:28.378 -07 000000382 INF: FPGA: Recv ZSGSRD 31088
17-03-17 23:24:28.388 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:28.388 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:28.388 -07 000000429 INF: FPGA: Recv ZSGSRD 31087
17-03-17 23:24:28.398 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:28.398 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:24:28.398 -07 000000478 INF: FPGA: Recv ZPIEZORD 26648
17-03-17 23:24:28.408 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:28.408 -07 000000576 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.7 V, since DAC is at 4.668 V. Piezo Error = -9.8 V.
17-03-17 23:24:28.408 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.0 um, Read 10 ADC samples: Avg = 31090 (-139.2 uncal um), Error = 0.8 uncal um, Median = 31089 (-139.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 31086 (-139.2 uncal um), Max = 31094 (-139.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:24:28.408 -07 000000576 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31090, posNoise = 4, negNoise = 4
17-03-17 23:24:28.408 -07 000000576 INF: Z Motor: After move to -0.140037, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:24:28.408 -07 000000576 INF: Z Motor: Settle wait time = 4559 ms, measure time = 101 ms (allowed 150 ms), total time = 4660 ms
17-03-17 23:24:28.408 -07 000000576 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 23:24:28.458 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4715 ms
17-03-17 23:24:28.458 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:24:28.458 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:24:28.458 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:24:28.458 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:24:28.458 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:24:28.458 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:24:28.458 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:24:28.458 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:24:28.458 -07 000000462 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 23:24:28.488 -07 000000462 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 20 ms.
17-03-17 23:24:28.488 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:24:28.488 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:24:28.488 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:24:28.488 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 23:24:28.488 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 30 ms.
17-03-17 23:24:28.498 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:24:28.538 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:24:28.738 -07 000000482 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:24:28.738 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:24:28.738 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:24:28.738 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1113297000, 0x0, 559484976) start.
17-03-17 23:24:28.778 -07 000000593 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:24:28.778 -07 000000478 INF: FPGA: Recv CAMSNAP
17-03-17 23:24:28.778 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 23:24:28.858 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1113297000, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 23:24:28.858 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:24:28.858 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:24:28.858 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 23:24:28.878 -07 000000593 INF: Image SNR check: start
17-03-17 23:24:28.878 -07 000000429 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:24:28.878 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:24:28.888 -07 000000429 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:24:28.888 -07 000000429 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:24:28.888 -07 000000593 INF: Image SNR check: pass  [peak (Max-Min)=56.60]
17-03-17 23:24:28.888 -07 000000593 INF: Autofocus start
17-03-17 23:24:28.898 -07 000000593 INF: MeasureProfile start
17-03-17 23:24:28.908 -07 000000593 INF: MeasureProfile done
17-03-17 23:24:28.908 -07 000000593 INF: X=0  Z correction [um]=-0.02394831
17-03-17 23:24:28.908 -07 000000593 INF: Autofocus finished
17-03-17 23:24:29.088 -07 000000382 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:24:29.088 -07 000000429 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:24:29.088 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.9111328125, Z-position -0.140052107498483. ----------
17-03-17 23:24:29.088 -07 000000610 INF: Cycle	75	Tile	1	Exposure Settings		A	474	G	228	T	228	C	474
17-03-17 23:24:29.098 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29098, sync = True, waitForSettling = True)
17-03-17 23:24:29.098 -07 000000610 INF: Z Motor: Moving to -0.133202 mm, started at -0.140052 mm, distance = 6.85 um
17-03-17 23:24:29.098 -07 000000610 INF: FPGA: Xmit ZDACW 29098\n [Z Motor]
17-03-17 23:24:29.098 -07 000000382 INF: FPGA: Recv ZDACW
17-03-17 23:24:29.108 -07 000000610 INF: FPGA: 'ZDACW 29098' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:24:29.108 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:24:29.108 -07 000000486 INF: FPGA: Recv ZDACR 29098
17-03-17 23:24:29.118 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:29.118 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:24:29.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:29.268 -07 000000429 INF: FPGA: Recv ZSGSRD 30020
17-03-17 23:24:29.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:24:29.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:29.278 -07 000000482 INF: FPGA: Recv ZSGSRD 30019
17-03-17 23:24:29.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:29.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:29.288 -07 000000382 INF: FPGA: Recv ZSGSRD 30019
17-03-17 23:24:29.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:29.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:29.298 -07 000000486 INF: FPGA: Recv ZSGSRD 30028
17-03-17 23:24:29.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:29.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:29.308 -07 000000429 INF: FPGA: Recv ZSGSRD 30019
17-03-17 23:24:29.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:29.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:29.318 -07 000000478 INF: FPGA: Recv ZSGSRD 30027
17-03-17 23:24:29.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:29.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:29.328 -07 000000382 INF: FPGA: Recv ZSGSRD 30026
17-03-17 23:24:29.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:29.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:29.338 -07 000000486 INF: FPGA: Recv ZSGSRD 30031
17-03-17 23:24:29.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:29.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:29.348 -07 000000502 INF: FPGA: Recv ZSGSRD 30020
17-03-17 23:24:29.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:29.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:29.358 -07 000000593 INF: FPGA: Recv ZSGSRD 30024
17-03-17 23:24:29.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:29.368 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:24:29.368 -07 000000382 INF: FPGA: Recv ZPIEZORD 25535
17-03-17 23:24:29.378 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:29.378 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.440 V. Piezo Error = -9.9 V.
17-03-17 23:24:29.378 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.2 um, Read 10 ADC samples: Avg = 30023 (-132.4 uncal um), Error = 0.8 uncal um, Median = 30022 (-132.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30019 (-132.4 uncal um), Max = 30031 (-132.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:24:29.378 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30023, posNoise = 8, negNoise = 4
17-03-17 23:24:29.378 -07 000000610 INF: Z Motor: After move to -0.133202, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:24:29.378 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 23:24:29.378 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:24:29.378 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:24:29.378 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:24:29.378 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:24:29.378 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:24:29.378 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:24:29.378 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:24:29.378 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:24:29.378 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:24:29.378 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:24:29.378 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:24:29.378 -07 000000480 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 23:24:29.388 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:24:29.388 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:24:29.398 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-17 23:24:29.398 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 23:24:29.398 -07 000000480 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 21 ms.
17-03-17 23:24:29.398 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:24:29.408 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 23:24:29.408 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:24:29.418 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 23:24:29.418 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 40 ms.
17-03-17 23:24:29.418 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 474 474 228 228 29275 150\n [Camera]
17-03-17 23:24:29.618 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:24:30.098 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 666
17-03-17 23:24:30.098 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 666
17-03-17 23:24:30.098 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:24:30.098 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:24:30.098 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) start.
17-03-17 23:24:30.098 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 666
17-03-17 23:24:30.098 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 666
17-03-17 23:24:30.098 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:24:30.098 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:24:30.098 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2216660184, 0x0, 418435064) start.
17-03-17 23:24:30.288 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29275 859
17-03-17 23:24:30.438 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1009
17-03-17 23:24:30.488 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) end. Duration was 393 ms.
17-03-17 23:24:30.488 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 23:24:30.488 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:24:30.498 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2216660184, 0x0, 418435064) end. Duration was 393 ms.
17-03-17 23:24:30.498 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 23:24:30.498 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:24:30.498 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:24:30.498 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 23:24:30.498 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:24:30.508 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 23:24:30.668 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1237
17-03-17 23:24:30.668 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1237
17-03-17 23:24:30.668 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:24:30.668 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:24:30.668 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1237
17-03-17 23:24:30.668 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 23:24:30.668 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1237
17-03-17 23:24:30.668 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:24:30.668 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:24:30.668 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 23:24:30.858 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1431
17-03-17 23:24:30.858 -07 000000623 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:24:30.858 -07 000000610 INF: FPGA: 'CAMDBLSNAP 474 474 228 228 29275 150' command took 2 ms to send, 1427 ms to get response, and 1438 ms overall
17-03-17 23:24:30.858 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:24:30.868 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.9111328125, Z-Position -0.133197473143224. ------
17-03-17 23:24:30.868 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:24:30.868 -07 000000475 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13929 mm
17-03-17 23:24:30.868 -07 000000475 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:24:30.868 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:24:30.868 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 30428, sync = True, waitForSettling = False)
17-03-17 23:24:30.868 -07 000000502 INF: Z Motor: Moving to -0.139290 mm, started at -0.133197 mm, distance = -6.09 um
17-03-17 23:24:30.868 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 23:24:30.868 -07 000000576 INF: Y Motor: Moving to 60.7426 mm, started at 59.9111 mm, delta = 0.8315 mm
17-03-17 23:24:30.878 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:24:30.878 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:24:30.878 -07 000000478 INF: FPGA: Recv YRDPOS 122698
17-03-17 23:24:30.888 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:24:30.888 -07 000000576 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:24:30.888 -07 000000576 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:24:30.888 -07 000000576 INF: Y Motor: Moving 1330 steps2
17-03-17 23:24:30.888 -07 000000462 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:24:30.898 -07 000000502 INF: FPGA: Xmit ZDACW 30428\n [Z Motor]
17-03-17 23:24:30.898 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 23:24:30.908 -07 000000502 INF: FPGA: 'ZDACW 30428' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 23:24:30.908 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:24:30.918 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:24:30.918 -07 000000480 INF: FPGA: Recv ZDACR 30428
17-03-17 23:24:30.928 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:24:30.928 -07 000000502 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet))
17-03-17 23:24:31.058 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 23:24:31.058 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 23:24:31.058 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:24:31.058 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:24:31.058 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 389 ms.
17-03-17 23:24:31.058 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 23:24:31.058 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:24:31.068 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:24:31.068 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 23:24:31.068 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 23:24:31.088 -07 000000433 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:24:31.088 -07 000000462 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 23:24:31.278 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 75, FrontChillerTemperature: 3.988112,
17-03-17 23:24:31.278 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 23:24:31.278 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-17 23:24:31.328 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:24:31.328 -07 000000480 INF: FPGA: Recv YRDPOS 124381
17-03-17 23:24:31.338 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 23:24:31.338 -07 000000576 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:24:31.338 -07 000000576 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 23:24:31.338 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.831 mm, average velocity = 2.089 mm/sec
17-03-17 23:24:32.068 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:24:32.068 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 74. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1192, R2=1246, Total=2438. Warn if over 250 bubbles per interval.
17-03-17 23:24:32.288 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:24:32.288 -07 000000480 INF: FPGA: Recv YRDPOS 124381
17-03-17 23:24:32.298 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:32.298 -07 000000576 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:24:32.318 -07 000000576 INF: Y Motor: After move to 60.742607, error = -0.009697, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:24:32.318 -07 000000576 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:24:32.318 -07 000000576 INF: Y Motor: Moved to 60.7329 after 1447 ms (table move)
17-03-17 23:24:32.328 -07 000000475 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139290 mm (DAC = 30428)
17-03-17 23:24:32.328 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:32.328 -07 000000482 INF: FPGA: Recv ZSGSRD 30970
17-03-17 23:24:32.338 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:32.338 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:32.338 -07 000000433 INF: FPGA: Recv ZSGSRD 30976
17-03-17 23:24:32.348 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:32.348 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:32.348 -07 000000486 INF: FPGA: Recv ZSGSRD 30976
17-03-17 23:24:32.358 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:32.358 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:32.358 -07 000000576 INF: FPGA: Recv ZSGSRD 30972
17-03-17 23:24:32.368 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:32.368 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:32.368 -07 000000482 INF: FPGA: Recv ZSGSRD 30972
17-03-17 23:24:32.378 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:32.378 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:32.378 -07 000000486 INF: FPGA: Recv ZSGSRD 30961
17-03-17 23:24:32.388 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:32.388 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:32.388 -07 000000593 INF: FPGA: Recv ZSGSRD 30971
17-03-17 23:24:32.398 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:32.398 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:32.398 -07 000000382 INF: FPGA: Recv ZSGSRD 30980
17-03-17 23:24:32.408 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:32.408 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:32.408 -07 000000501 INF: FPGA: Recv ZSGSRD 30973
17-03-17 23:24:32.418 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:32.418 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:32.418 -07 000000486 INF: FPGA: Recv ZSGSRD 30977
17-03-17 23:24:32.428 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:32.428 -07 000000475 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:24:32.428 -07 000000593 INF: FPGA: Recv ZPIEZORD 26771
17-03-17 23:24:32.438 -07 000000475 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:32.438 -07 000000475 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.643 V. Piezo Error = -9.2 V.
17-03-17 23:24:32.438 -07 000000475 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.3 um, Read 10 ADC samples: Avg = 30973 (-138.5 uncal um), Error = 0.8 uncal um, Median = 30972 (-138.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 30961 (-138.4 uncal um), Max = 30980 (-138.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 12 (0.1 uncal um)
17-03-17 23:24:32.438 -07 000000475 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30973, posNoise = 7, negNoise = 12
17-03-17 23:24:32.438 -07 000000475 INF: Z Motor: After move to -0.139290, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:24:32.438 -07 000000475 INF: Z Motor: Settle wait time = 1451 ms, measure time = 110 ms (allowed 150 ms), total time = 1561 ms
17-03-17 23:24:32.438 -07 000000475 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 23:24:32.478 -07 000000475 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1604 ms
17-03-17 23:24:32.478 -07 000000475 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:24:32.478 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:24:32.478 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:24:32.478 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:24:32.478 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:24:32.478 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:24:32.478 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:24:32.478 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:24:32.478 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:24:32.488 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:24:32.488 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:24:32.498 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 23:24:32.498 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 23:24:32.498 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:24:32.548 -07 000000482 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:24:32.748 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:24:32.748 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:24:32.748 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:24:32.748 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-17 23:24:32.788 -07 000000486 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:24:32.788 -07 000000433 INF: FPGA: Recv CAMSNAP
17-03-17 23:24:32.788 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 23:24:32.878 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 23:24:32.878 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:24:32.878 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:24:32.878 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 23:24:32.888 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:24:32.888 -07 000000486 INF: Autofocus start
17-03-17 23:24:32.888 -07 000000486 INF: MeasureProfile start
17-03-17 23:24:32.888 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:24:32.898 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:24:32.898 -07 000000593 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:24:32.898 -07 000000486 INF: MeasureProfile done
17-03-17 23:24:32.898 -07 000000486 INF: X=0  Z correction [um]=-0.02394831
17-03-17 23:24:32.898 -07 000000486 INF: Autofocus finished
17-03-17 23:24:33.098 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:24:33.098 -07 000000593 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:24:33.098 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73291015625, Z-position -0.139300474677897. ----------
17-03-17 23:24:33.098 -07 000000610 INF: Cycle	75	Tile	2	Exposure Settings		A	474	G	228	T	228	C	474
17-03-17 23:24:33.108 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28935, sync = True, waitForSettling = True)
17-03-17 23:24:33.108 -07 000000610 INF: Z Motor: Moving to -0.132456 mm, started at -0.139300 mm, distance = 6.84 um
17-03-17 23:24:33.108 -07 000000610 INF: FPGA: Xmit ZDACW 28935\n [Z Motor]
17-03-17 23:24:33.108 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 23:24:33.118 -07 000000610 INF: FPGA: 'ZDACW 28935' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:24:33.118 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:24:33.118 -07 000000502 INF: FPGA: Recv ZDACR 28935
17-03-17 23:24:33.128 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:33.128 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:24:33.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:33.278 -07 000000593 INF: FPGA: Recv ZSGSRD 29915
17-03-17 23:24:33.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:24:33.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:33.288 -07 000000478 INF: FPGA: Recv ZSGSRD 29905
17-03-17 23:24:33.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:33.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:33.298 -07 000000429 INF: FPGA: Recv ZSGSRD 29911
17-03-17 23:24:33.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:33.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:33.308 -07 000000576 INF: FPGA: Recv ZSGSRD 29909
17-03-17 23:24:33.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:33.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:33.318 -07 000000501 INF: FPGA: Recv ZSGSRD 29906
17-03-17 23:24:33.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:33.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:33.328 -07 000000623 INF: FPGA: Recv ZSGSRD 29914
17-03-17 23:24:33.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:33.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:33.338 -07 000000433 INF: FPGA: Recv ZSGSRD 29911
17-03-17 23:24:33.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:33.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:33.348 -07 000000429 INF: FPGA: Recv ZSGSRD 29910
17-03-17 23:24:33.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:33.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:33.358 -07 000000501 INF: FPGA: Recv ZSGSRD 29906
17-03-17 23:24:33.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:33.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:33.368 -07 000000502 INF: FPGA: Recv ZSGSRD 29908
17-03-17 23:24:33.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:33.378 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:24:33.378 -07 000000576 INF: FPGA: Recv ZPIEZORD 25396
17-03-17 23:24:33.388 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:33.388 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.415 V. Piezo Error = -9.9 V.
17-03-17 23:24:33.388 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.5 um, Read 10 ADC samples: Avg = 29910 (-131.7 uncal um), Error = 0.8 uncal um, Median = 29910 (-131.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29905 (-131.7 uncal um), Max = 29915 (-131.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:24:33.388 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29910, posNoise = 5, negNoise = 5
17-03-17 23:24:33.388 -07 000000610 INF: Z Motor: After move to -0.132456, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:24:33.388 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 23:24:33.388 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:24:33.388 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:24:33.388 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:24:33.388 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:24:33.388 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:24:33.388 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:24:33.388 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:24:33.388 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:24:33.388 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:24:33.388 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:24:33.388 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:24:33.388 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:24:33.398 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:24:33.398 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:24:33.398 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 23:24:33.398 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:24:33.408 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 23:24:33.408 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 23:24:33.408 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 23:24:33.408 -07 000000551 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:24:33.418 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 474 474 228 228 29112 150\n [Camera]
17-03-17 23:24:33.608 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:24:34.088 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 666
17-03-17 23:24:34.088 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 666
17-03-17 23:24:34.088 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:24:34.088 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:24:34.088 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 23:24:34.088 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 666
17-03-17 23:24:34.088 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 666
17-03-17 23:24:34.088 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:24:34.088 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:24:34.088 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 23:24:34.278 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29112 859
17-03-17 23:24:34.428 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1009
17-03-17 23:24:34.488 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 23:24:34.488 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 23:24:34.488 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:24:34.488 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 23:24:34.488 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 23:24:34.488 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:24:34.488 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:24:34.488 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 23:24:34.498 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:24:34.498 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 23:24:34.658 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1237
17-03-17 23:24:34.658 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1237
17-03-17 23:24:34.658 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:24:34.658 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:24:34.658 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-17 23:24:34.668 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1237
17-03-17 23:24:34.668 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1237
17-03-17 23:24:34.668 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:24:34.668 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:24:34.668 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-17 23:24:34.848 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP 1429
17-03-17 23:24:34.848 -07 000000433 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:24:34.848 -07 000000610 INF: FPGA: 'CAMDBLSNAP 474 474 228 228 29112 150' command took 2 ms to send, 1427 ms to get response, and 1437 ms overall
17-03-17 23:24:34.848 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:24:34.848 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73291015625, Z-Position -0.132471537171205. ------
17-03-17 23:24:34.858 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:24:34.858 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13925 mm
17-03-17 23:24:34.858 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:24:34.858 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:24:34.858 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 30419, sync = True, waitForSettling = False)
17-03-17 23:24:34.858 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 23:24:34.858 -07 000000501 INF: Y Motor: Moving to 61.5726 mm, started at 60.7329 mm, delta = 0.8397 mm
17-03-17 23:24:34.858 -07 000000382 INF: Z Motor: Moving to -0.139249 mm, started at -0.132472 mm, distance = -6.78 um
17-03-17 23:24:34.868 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:24:34.868 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:24:34.868 -07 000000551 INF: FPGA: Recv YRDPOS 124382
17-03-17 23:24:34.878 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 23:24:34.878 -07 000000501 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:24:34.878 -07 000000486 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:24:34.878 -07 000000501 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:24:34.878 -07 000000501 INF: Y Motor: Moving 1343 steps-20
17-03-17 23:24:34.888 -07 000000382 INF: FPGA: Xmit ZDACW 30419\n [Z Motor]
17-03-17 23:24:34.888 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 23:24:34.898 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:24:34.898 -07 000000382 INF: FPGA: 'ZDACW 30419' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 23:24:34.908 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:24:34.908 -07 000000480 INF: FPGA: Recv ZDACR 30419
17-03-17 23:24:34.918 -07 000000382 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:24:34.918 -07 000000382 INF: Z Motor: MoveAbsStepped took 51 ms (did NOT wait for settling yet))
17-03-17 23:24:35.068 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 23:24:35.068 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 23:24:35.068 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:24:35.068 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 23:24:35.068 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 23:24:35.068 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:24:35.068 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:24:35.068 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 23:24:35.068 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 23:24:35.078 -07 000000482 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:24:35.078 -07 000000486 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 23:24:35.078 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 23:24:35.268 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 23:24:35.268 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-17 23:24:35.318 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:24:35.318 -07 000000593 INF: FPGA: Recv YRDPOS 126083
17-03-17 23:24:35.328 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:24:35.328 -07 000000501 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:24:35.328 -07 000000501 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 23:24:35.328 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.840 mm, average velocity = 2.142 mm/sec
17-03-17 23:24:36.278 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:24:36.278 -07 000000486 INF: FPGA: Recv YRDPOS 126083
17-03-17 23:24:36.288 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:24:36.288 -07 000000501 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:24:36.308 -07 000000501 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:24:36.308 -07 000000501 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:24:36.308 -07 000000501 INF: Y Motor: Moved to 61.5640 after 1448 ms (table move)
17-03-17 23:24:36.318 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139249 mm (DAC = 30419)
17-03-17 23:24:36.318 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:36.318 -07 000000429 INF: FPGA: Recv ZSGSRD 30963
17-03-17 23:24:36.328 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:36.338 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:36.338 -07 000000501 INF: FPGA: Recv ZSGSRD 30969
17-03-17 23:24:36.348 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:24:36.348 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:36.348 -07 000000429 INF: FPGA: Recv ZSGSRD 30975
17-03-17 23:24:36.358 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:36.358 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:36.358 -07 000000502 INF: FPGA: Recv ZSGSRD 30969
17-03-17 23:24:36.368 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:36.368 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:36.368 -07 000000433 INF: FPGA: Recv ZSGSRD 30962
17-03-17 23:24:36.378 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:36.378 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:36.378 -07 000000482 INF: FPGA: Recv ZSGSRD 30959
17-03-17 23:24:36.388 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:36.388 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:36.388 -07 000000576 INF: FPGA: Recv ZSGSRD 30966
17-03-17 23:24:36.398 -07 000000462 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:36.398 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:36.398 -07 000000486 INF: FPGA: Recv ZSGSRD 30973
17-03-17 23:24:36.408 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:36.408 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:36.408 -07 000000480 INF: FPGA: Recv ZSGSRD 30972
17-03-17 23:24:36.418 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:36.418 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:36.418 -07 000000551 INF: FPGA: Recv ZSGSRD 30975
17-03-17 23:24:36.428 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:36.428 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:24:36.428 -07 000000576 INF: FPGA: Recv ZPIEZORD 26804
17-03-17 23:24:36.438 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:36.438 -07 000000462 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.642 V. Piezo Error = -9.2 V.
17-03-17 23:24:36.438 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.2 um, Read 10 ADC samples: Avg = 30968 (-138.5 uncal um), Error = 0.8 uncal um, Median = 30969 (-138.5 uncal um), StdDev = 6 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30959 (-138.4 uncal um), Max = 30975 (-138.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 23:24:36.438 -07 000000462 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30968, posNoise = 7, negNoise = 9
17-03-17 23:24:36.438 -07 000000462 INF: Z Motor: After move to -0.139249, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:24:36.438 -07 000000462 INF: Z Motor: Settle wait time = 1451 ms, measure time = 120 ms (allowed 150 ms), total time = 1571 ms
17-03-17 23:24:36.438 -07 000000462 INF: Z Motor: Waiting extra 30 ms after reading position to reach expected total of 150 ms
17-03-17 23:24:36.468 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1604 ms
17-03-17 23:24:36.468 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:24:36.468 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:24:36.468 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:24:36.468 -07 000000429 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:24:36.468 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:24:36.468 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:24:36.468 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:24:36.468 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:24:36.468 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:24:36.478 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 5 ms.
17-03-17 23:24:36.478 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:24:36.488 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 23:24:36.488 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 23:24:36.488 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:24:36.538 -07 000000475 INF: FPGA: Recv @CAMSNAP turning led on 43
17-03-17 23:24:36.658 -07 000000551 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 75, FrontChillerTemperature: 3.971733,
17-03-17 23:24:36.738 -07 000000462 INF: FPGA: Recv @CAMSNAP img rdy 243
17-03-17 23:24:36.738 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 243
17-03-17 23:24:36.738 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:24:36.738 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) start.
17-03-17 23:24:36.768 -07 000000502 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:24:36.778 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-17 23:24:36.778 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 23:24:36.858 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 23:24:36.858 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:24:36.858 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 23:24:36.858 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 23:24:36.878 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:24:36.878 -07 000000433 INF: Autofocus start
17-03-17 23:24:36.878 -07 000000433 INF: MeasureProfile start
17-03-17 23:24:36.878 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:24:36.888 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:24:36.888 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:24:36.898 -07 000000433 INF: MeasureProfile done
17-03-17 23:24:36.898 -07 000000433 INF: X=0  Z correction [um]=-0.02394831
17-03-17 23:24:36.898 -07 000000433 INF: Autofocus finished
17-03-17 23:24:37.068 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:24:37.068 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 74. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1192, R2=1246, Total=2438. Warn if over 250 bubbles per interval.
17-03-17 23:24:37.088 -07 000000482 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:24:37.088 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:24:37.088 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.139268353617188. ----------
17-03-17 23:24:37.088 -07 000000610 INF: Cycle	75	Tile	3	Exposure Settings		A	474	G	228	T	228	C	474
17-03-17 23:24:37.098 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28926, sync = True, waitForSettling = True)
17-03-17 23:24:37.098 -07 000000610 INF: Z Motor: Moving to -0.132415 mm, started at -0.139268 mm, distance = 6.85 um
17-03-17 23:24:37.098 -07 000000610 INF: FPGA: Xmit ZDACW 28926\n [Z Motor]
17-03-17 23:24:37.098 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 23:24:37.108 -07 000000610 INF: FPGA: 'ZDACW 28926' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:24:37.108 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:24:37.108 -07 000000501 INF: FPGA: Recv ZDACR 28926
17-03-17 23:24:37.118 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:37.118 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:24:37.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:37.268 -07 000000576 INF: FPGA: Recv ZSGSRD 29902
17-03-17 23:24:37.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:24:37.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:37.278 -07 000000382 INF: FPGA: Recv ZSGSRD 29906
17-03-17 23:24:37.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:37.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:37.288 -07 000000623 INF: FPGA: Recv ZSGSRD 29904
17-03-17 23:24:37.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:37.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:37.298 -07 000000486 INF: FPGA: Recv ZSGSRD 29898
17-03-17 23:24:37.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:37.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:37.308 -07 000000593 INF: FPGA: Recv ZSGSRD 29907
17-03-17 23:24:37.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:37.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:37.318 -07 000000382 INF: FPGA: Recv ZSGSRD 29905
17-03-17 23:24:37.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:37.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:37.328 -07 000000502 INF: FPGA: Recv ZSGSRD 29904
17-03-17 23:24:37.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:37.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:37.338 -07 000000475 INF: FPGA: Recv ZSGSRD 29902
17-03-17 23:24:37.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:37.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:37.348 -07 000000478 INF: FPGA: Recv ZSGSRD 29901
17-03-17 23:24:37.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:37.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:37.358 -07 000000433 INF: FPGA: Recv ZSGSRD 29906
17-03-17 23:24:37.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:37.368 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:24:37.368 -07 000000429 INF: FPGA: Recv ZPIEZORD 25452
17-03-17 23:24:37.378 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:37.378 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.414 V. Piezo Error = -9.8 V.
17-03-17 23:24:37.378 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.4 um, Read 10 ADC samples: Avg = 29904 (-131.6 uncal um), Error = 0.8 uncal um, Median = 29904 (-131.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29898 (-131.6 uncal um), Max = 29907 (-131.7 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:24:37.378 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29904, posNoise = 3, negNoise = 6
17-03-17 23:24:37.378 -07 000000610 INF: Z Motor: After move to -0.132415, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:24:37.378 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 23:24:37.378 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:24:37.378 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:24:37.378 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:24:37.378 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:24:37.378 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:24:37.378 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:24:37.378 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:24:37.378 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:24:37.378 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 23:24:37.378 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:24:37.378 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:24:37.378 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:24:37.388 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 23:24:37.388 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:24:37.388 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 23:24:37.388 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:24:37.398 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 23:24:37.398 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 23:24:37.398 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 23:24:37.398 -07 000000501 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 23:24:37.398 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 474 474 228 228 29103 150\n [Camera]
17-03-17 23:24:37.598 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:24:38.068 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 666
17-03-17 23:24:38.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 666
17-03-17 23:24:38.068 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:24:38.068 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:24:38.068 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 23:24:38.068 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 666
17-03-17 23:24:38.068 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 666
17-03-17 23:24:38.078 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:24:38.078 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:24:38.078 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-17 23:24:38.268 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29103 860
17-03-17 23:24:38.408 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1009
17-03-17 23:24:38.448 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 23:24:38.448 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 23:24:38.448 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:24:38.448 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 23:24:38.448 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 23:24:38.448 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:24:38.458 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:24:38.458 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:24:38.458 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 23:24:38.468 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 23:24:38.638 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1237
17-03-17 23:24:38.638 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1237
17-03-17 23:24:38.638 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:24:38.638 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:24:38.638 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start.
17-03-17 23:24:38.648 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1237
17-03-17 23:24:38.648 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1237
17-03-17 23:24:38.648 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:24:38.648 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:24:38.648 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-17 23:24:38.828 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP 1430
17-03-17 23:24:38.828 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:24:38.828 -07 000000610 INF: FPGA: 'CAMDBLSNAP 474 474 228 228 29103 150' command took 2 ms to send, 1429 ms to get response, and 1437 ms overall
17-03-17 23:24:38.838 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:24:38.838 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56396484375, Z-Position -0.132432991898355. ------
17-03-17 23:24:38.838 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:24:38.838 -07 000000478 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13882 mm
17-03-17 23:24:38.838 -07 000000478 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:24:38.838 -07 000000433 INF: Z Motor: Entering MoveAbsStepped (DAC = 30324, sync = True, waitForSettling = False)
17-03-17 23:24:38.848 -07 000000433 INF: Z Motor: Moving to -0.138814 mm, started at -0.132433 mm, distance = -6.38 um
17-03-17 23:24:38.848 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:24:38.848 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:24:38.848 -07 000000433 INF: FPGA: Xmit ZDACW 30324\n [Z Motor]
17-03-17 23:24:38.848 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 23:24:38.848 -07 000000501 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-17 23:24:38.848 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 23:24:38.858 -07 000000433 INF: FPGA: 'ZDACW 30324' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:38.858 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:24:38.858 -07 000000486 INF: FPGA: Recv YRDPOS 126084
17-03-17 23:24:38.868 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 23:24:38.868 -07 000000501 INF: Y Motor: Encoder = 126084 = motor step 98503.1 = 61.5645 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:24:38.868 -07 000000482 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:24:38.868 -07 000000501 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:24:38.868 -07 000000501 INF: Y Motor: Moving 1341 steps-18
17-03-17 23:24:38.878 -07 000000433 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:24:38.878 -07 000000593 INF: FPGA: Recv ZDACR 30324
17-03-17 23:24:38.888 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:24:38.888 -07 000000433 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:24:38.888 -07 000000433 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-17 23:24:39.048 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 23:24:39.048 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 23:24:39.048 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:24:39.048 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 23:24:39.048 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 23:24:39.048 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:24:39.048 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:24:39.048 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 23:24:39.048 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 23:24:39.058 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 23:24:39.068 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:24:39.068 -07 000000482 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 221 ms overall
17-03-17 23:24:39.268 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-17 23:24:39.268 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 395 ms overall
17-03-17 23:24:39.308 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:24:39.308 -07 000000480 INF: FPGA: Recv YRDPOS 127786
17-03-17 23:24:39.318 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:24:39.318 -07 000000501 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:24:39.318 -07 000000501 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 23:24:39.318 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.839 mm, average velocity = 2.118 mm/sec
17-03-17 23:24:40.268 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:24:40.268 -07 000000593 INF: FPGA: Recv YRDPOS 127786
17-03-17 23:24:40.278 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:24:40.278 -07 000000501 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:24:40.298 -07 000000501 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:24:40.298 -07 000000501 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:24:40.298 -07 000000501 INF: Y Motor: Moved to 62.3955 after 1451 ms (table move)
17-03-17 23:24:40.298 -07 000000478 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138814 mm (DAC = 30324)
17-03-17 23:24:40.298 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:40.308 -07 000000475 INF: FPGA: Recv ZSGSRD 30900
17-03-17 23:24:40.308 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 23:24:40.308 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:40.308 -07 000000482 INF: FPGA: Recv ZSGSRD 30901
17-03-17 23:24:40.318 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:24:40.318 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:40.318 -07 000000433 INF: FPGA: Recv ZSGSRD 30901
17-03-17 23:24:40.328 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:40.328 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:40.328 -07 000000576 INF: FPGA: Recv ZSGSRD 30900
17-03-17 23:24:40.338 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:40.338 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:40.338 -07 000000486 INF: FPGA: Recv ZSGSRD 30904
17-03-17 23:24:40.348 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:40.348 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:40.348 -07 000000551 INF: FPGA: Recv ZSGSRD 30891
17-03-17 23:24:40.358 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:40.358 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:40.358 -07 000000623 INF: FPGA: Recv ZSGSRD 30897
17-03-17 23:24:40.368 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:40.368 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:40.368 -07 000000576 INF: FPGA: Recv ZSGSRD 30895
17-03-17 23:24:40.378 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:40.378 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:40.378 -07 000000486 INF: FPGA: Recv ZSGSRD 30896
17-03-17 23:24:40.388 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:40.388 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:40.388 -07 000000551 INF: FPGA: Recv ZSGSRD 30904
17-03-17 23:24:40.398 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:40.398 -07 000000478 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:24:40.398 -07 000000623 INF: FPGA: Recv ZPIEZORD 26760
17-03-17 23:24:40.408 -07 000000478 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:40.408 -07 000000478 INF: Z Motor: Piezo is near 37.2 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.627 V. Piezo Error = -9.1 V.
17-03-17 23:24:40.408 -07 000000478 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.8 um, Read 10 ADC samples: Avg = 30899 (-138.0 uncal um), Error = 0.8 uncal um, Median = 30900 (-138.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30891 (-138.0 uncal um), Max = 30904 (-138.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 23:24:40.408 -07 000000478 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30899, posNoise = 5, negNoise = 8
17-03-17 23:24:40.408 -07 000000478 INF: Z Motor: After move to -0.138814, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:24:40.408 -07 000000478 INF: Z Motor: Settle wait time = 1457 ms, measure time = 102 ms (allowed 150 ms), total time = 1559 ms
17-03-17 23:24:40.408 -07 000000478 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 23:24:40.458 -07 000000478 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1613 ms
17-03-17 23:24:40.458 -07 000000478 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:24:40.458 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:24:40.458 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:24:40.458 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:24:40.458 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:24:40.458 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:24:40.458 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:24:40.458 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:24:40.458 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:24:40.468 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:24:40.468 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:24:40.468 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 23:24:40.468 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 23:24:40.478 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:24:40.518 -07 000000501 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:24:40.718 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:24:40.718 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:24:40.718 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:24:40.718 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2268957512, 0x0, 559484976) start.
17-03-17 23:24:40.758 -07 000000433 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:24:40.758 -07 000000482 INF: FPGA: Recv CAMSNAP
17-03-17 23:24:40.758 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 275 ms to get response, and 284 ms overall
17-03-17 23:24:40.838 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2268957512, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 23:24:40.838 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:24:40.838 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 23:24:40.838 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms.
17-03-17 23:24:40.858 -07 000000623 INF: Autofocus start
17-03-17 23:24:40.858 -07 000000623 INF: MeasureProfile start
17-03-17 23:24:40.858 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:24:40.858 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:24:40.868 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:24:40.868 -07 000000478 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:24:40.868 -07 000000623 INF: MeasureProfile done
17-03-17 23:24:40.868 -07 000000623 INF: X=16  Z correction [um]=0.0530179
17-03-17 23:24:40.868 -07 000000623 INF: Autofocus finished
17-03-17 23:24:41.068 -07 000000486 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:24:41.068 -07 000000478 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:24:41.078 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.138825082979407. ----------
17-03-17 23:24:41.078 -07 000000610 INF: Cycle	75	Tile	4	Exposure Settings		A	474	G	228	T	228	C	474
17-03-17 23:24:41.078 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28848, sync = True, waitForSettling = True)
17-03-17 23:24:41.078 -07 000000610 INF: Z Motor: Moving to -0.132058 mm, started at -0.138825 mm, distance = 6.77 um
17-03-17 23:24:41.078 -07 000000610 INF: FPGA: Xmit ZDACW 28848\n [Z Motor]
17-03-17 23:24:41.078 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 23:24:41.088 -07 000000610 INF: FPGA: 'ZDACW 28848' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:24:41.088 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:24:41.088 -07 000000551 INF: FPGA: Recv ZDACR 28848
17-03-17 23:24:41.098 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:41.098 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:24:41.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:41.248 -07 000000502 INF: FPGA: Recv ZSGSRD 29850
17-03-17 23:24:41.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:24:41.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:41.258 -07 000000433 INF: FPGA: Recv ZSGSRD 29853
17-03-17 23:24:41.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:41.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:41.268 -07 000000475 INF: FPGA: Recv ZSGSRD 29844
17-03-17 23:24:41.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:41.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:41.278 -07 000000429 INF: FPGA: Recv ZSGSRD 29844
17-03-17 23:24:41.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:41.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:41.288 -07 000000551 INF: FPGA: Recv ZSGSRD 29851
17-03-17 23:24:41.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:41.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:41.298 -07 000000382 INF: FPGA: Recv ZSGSRD 29847
17-03-17 23:24:41.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:41.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:41.308 -07 000000486 INF: FPGA: Recv ZSGSRD 29842
17-03-17 23:24:41.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:41.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:41.318 -07 000000429 INF: FPGA: Recv ZSGSRD 29848
17-03-17 23:24:41.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:41.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:41.328 -07 000000462 INF: FPGA: Recv ZSGSRD 29851
17-03-17 23:24:41.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:41.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:41.338 -07 000000576 INF: FPGA: Recv ZSGSRD 29849
17-03-17 23:24:41.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:41.348 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:24:41.348 -07 000000593 INF: FPGA: Recv ZPIEZORD 25385
17-03-17 23:24:41.358 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:41.358 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.402 V. Piezo Error = -9.8 V.
17-03-17 23:24:41.358 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.1 um, Read 10 ADC samples: Avg = 29848 (-131.3 uncal um), Error = 0.8 uncal um, Median = 29848 (-131.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29842 (-131.3 uncal um), Max = 29853 (-131.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:24:41.358 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29848, posNoise = 5, negNoise = 6
17-03-17 23:24:41.358 -07 000000610 INF: Z Motor: After move to -0.132058, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:24:41.358 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 23:24:41.358 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:24:41.358 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:24:41.358 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:24:41.358 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:24:41.358 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:24:41.358 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:24:41.358 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:24:41.358 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:24:41.358 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:24:41.358 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:24:41.358 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 23:24:41.358 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:24:41.368 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 23:24:41.368 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:24:41.368 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 23:24:41.368 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:24:41.378 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 23:24:41.378 -07 000000478 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 23:24:41.378 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 23:24:41.378 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:24:41.378 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 474 474 228 228 29025 150\n [Camera]
17-03-17 23:24:41.578 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:24:42.018 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 75, FrontChillerTemperature: 4.011254,
17-03-17 23:24:42.048 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 666
17-03-17 23:24:42.048 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 666
17-03-17 23:24:42.058 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:24:42.058 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:24:42.058 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start.
17-03-17 23:24:42.058 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 666
17-03-17 23:24:42.058 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 666
17-03-17 23:24:42.058 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:24:42.058 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:24:42.058 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) start.
17-03-17 23:24:42.068 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:24:42.068 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 74. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1192, R2=1246, Total=2438. Warn if over 250 bubbles per interval.
17-03-17 23:24:42.248 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29025 859
17-03-17 23:24:42.398 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1009
17-03-17 23:24:42.438 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 23:24:42.438 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 23:24:42.438 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 23:24:42.438 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:24:42.438 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 23:24:42.438 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:24:42.448 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:24:42.448 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:24:42.448 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 23:24:42.448 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 23:24:42.628 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1237
17-03-17 23:24:42.628 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1237
17-03-17 23:24:42.628 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:24:42.758 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1237
17-03-17 23:24:42.758 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1237
17-03-17 23:24:42.758 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:24:42.758 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:24:42.758 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) start.
17-03-17 23:24:42.758 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:24:42.758 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-17 23:24:42.818 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP 1430
17-03-17 23:24:42.818 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:24:42.818 -07 000000610 INF: FPGA: 'CAMDBLSNAP 474 474 228 228 29025 150' command took 2 ms to send, 1432 ms to get response, and 1437 ms overall
17-03-17 23:24:42.818 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:24:42.818 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.3955078125, Z-Position -0.132073236018416. ------
17-03-17 23:24:42.818 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:24:42.818 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13876 mm
17-03-17 23:24:42.818 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:24:42.818 -07 000000501 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 23:24:42.818 -07 000000501 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-17 23:24:42.818 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 30312, sync = True, waitForSettling = False)
17-03-17 23:24:42.818 -07 000000486 INF: Z Motor: Moving to -0.138759 mm, started at -0.132073 mm, distance = -6.69 um
17-03-17 23:24:42.818 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:24:42.828 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:24:42.828 -07 000000486 INF: FPGA: Xmit ZDACW 30312\n [Z Motor]
17-03-17 23:24:42.828 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 23:24:42.838 -07 000000486 INF: FPGA: 'ZDACW 30312' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:24:42.838 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:24:42.838 -07 000000576 INF: FPGA: Recv YRDPOS 127787
17-03-17 23:24:42.848 -07 000000475 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:24:42.848 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 23:24:42.848 -07 000000501 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:24:42.848 -07 000000501 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:24:42.848 -07 000000501 INF: Y Motor: Moving 1339 steps-15
17-03-17 23:24:42.858 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:24:42.858 -07 000000478 INF: FPGA: Recv ZDACR 30312
17-03-17 23:24:42.868 -07 000000486 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:24:42.868 -07 000000486 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-17 23:24:42.868 -07 000000501 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:24:43.048 -07 000000593 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:24:43.048 -07 000000475 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 23:24:43.158 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 23:24:43.158 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 23:24:43.158 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:24:43.158 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 23:24:43.158 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 23:24:43.158 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:24:43.158 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:24:43.158 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:24:43.158 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 536 ms.
17-03-17 23:24:43.168 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 23:24:43.238 -07 000000429 INF: FPGA: Recv YMVTILE
17-03-17 23:24:43.238 -07 000000501 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-17 23:24:43.288 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:24:43.288 -07 000000576 INF: FPGA: Recv YRDPOS 129483
17-03-17 23:24:43.298 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:43.298 -07 000000501 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:24:43.298 -07 000000501 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 23:24:43.298 -07 000000501 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.837 mm, average velocity = 2.130 mm/sec
17-03-17 23:24:44.248 -07 000000501 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:24:44.248 -07 000000551 INF: FPGA: Recv YRDPOS 129483
17-03-17 23:24:44.258 -07 000000501 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:24:44.258 -07 000000501 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:24:44.278 -07 000000501 INF: Y Motor: After move to 63.232609, error = -0.008488, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:24:44.278 -07 000000501 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:24:44.278 -07 000000501 INF: Y Motor: Moved to 63.2241 after 1457 ms (table move)
17-03-17 23:24:44.278 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138759 mm (DAC = 30312)
17-03-17 23:24:44.278 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:44.288 -07 000000576 INF: FPGA: Recv ZSGSRD 30897
17-03-17 23:24:44.288 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 23:24:44.288 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:44.288 -07 000000593 INF: FPGA: Recv ZSGSRD 30891
17-03-17 23:24:44.298 -07 000000382 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:24:44.298 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:44.298 -07 000000551 INF: FPGA: Recv ZSGSRD 30887
17-03-17 23:24:44.308 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:44.308 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:44.308 -07 000000475 INF: FPGA: Recv ZSGSRD 30896
17-03-17 23:24:44.318 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:44.318 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:44.318 -07 000000576 INF: FPGA: Recv ZSGSRD 30899
17-03-17 23:24:44.328 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:44.328 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:44.328 -07 000000501 INF: FPGA: Recv ZSGSRD 30887
17-03-17 23:24:44.338 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:44.338 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:44.338 -07 000000480 INF: FPGA: Recv ZSGSRD 30892
17-03-17 23:24:44.348 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:44.348 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:44.348 -07 000000475 INF: FPGA: Recv ZSGSRD 30888
17-03-17 23:24:44.358 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:44.358 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:44.358 -07 000000462 INF: FPGA: Recv ZSGSRD 30888
17-03-17 23:24:44.368 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:44.368 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:44.368 -07 000000478 INF: FPGA: Recv ZSGSRD 30890
17-03-17 23:24:44.378 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:44.378 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:24:44.378 -07 000000480 INF: FPGA: Recv ZPIEZORD 26738
17-03-17 23:24:44.388 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:44.388 -07 000000382 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.625 V. Piezo Error = -9.1 V.
17-03-17 23:24:44.388 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.8 um, Read 10 ADC samples: Avg = 30892 (-138.0 uncal um), Error = 0.8 uncal um, Median = 30890 (-138.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30887 (-137.9 uncal um), Max = 30899 (-138.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:24:44.388 -07 000000382 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30892, posNoise = 7, negNoise = 5
17-03-17 23:24:44.388 -07 000000382 INF: Z Motor: After move to -0.138759, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:24:44.388 -07 000000382 INF: Z Motor: Settle wait time = 1459 ms, measure time = 102 ms (allowed 150 ms), total time = 1561 ms
17-03-17 23:24:44.388 -07 000000382 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 23:24:44.438 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1613 ms
17-03-17 23:24:44.438 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:24:44.438 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:24:44.438 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:24:44.438 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:24:44.438 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:24:44.438 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:24:44.438 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:24:44.438 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:24:44.438 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:24:44.448 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:24:44.448 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:24:44.458 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 23:24:44.458 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 23:24:44.458 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:24:44.508 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:24:44.708 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:24:44.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:24:44.708 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:24:44.708 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) start.
17-03-17 23:24:44.748 -07 000000429 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:24:44.748 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 23:24:44.748 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 285 ms overall
17-03-17 23:24:44.818 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 23:24:44.818 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:24:44.828 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:24:44.828 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 23:24:44.848 -07 000000482 INF: Autofocus start
17-03-17 23:24:44.848 -07 000000482 INF: MeasureProfile start
17-03-17 23:24:44.848 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:24:44.848 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:24:44.858 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:24:44.858 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:24:44.858 -07 000000482 INF: MeasureProfile done
17-03-17 23:24:44.858 -07 000000482 INF: X=0  Z correction [um]=-0.02394831
17-03-17 23:24:44.858 -07 000000482 INF: Autofocus finished
17-03-17 23:24:45.058 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:24:45.058 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:24:45.058 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22412109375, Z-position -0.138780113494414. ----------
17-03-17 23:24:45.058 -07 000000610 INF: Cycle	75	Tile	5	Exposure Settings		A	474	G	228	T	228	C	474
17-03-17 23:24:45.068 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28819, sync = True, waitForSettling = True)
17-03-17 23:24:45.068 -07 000000610 INF: Z Motor: Moving to -0.131925 mm, started at -0.138780 mm, distance = 6.86 um
17-03-17 23:24:45.068 -07 000000610 INF: FPGA: Xmit ZDACW 28819\n [Z Motor]
17-03-17 23:24:45.068 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 23:24:45.078 -07 000000610 INF: FPGA: 'ZDACW 28819' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:24:45.078 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:24:45.078 -07 000000501 INF: FPGA: Recv ZDACR 28819
17-03-17 23:24:45.088 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:45.088 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:24:45.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:45.238 -07 000000623 INF: FPGA: Recv ZSGSRD 29822
17-03-17 23:24:45.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:24:45.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:45.248 -07 000000551 INF: FPGA: Recv ZSGSRD 29827
17-03-17 23:24:45.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:45.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:45.258 -07 000000480 INF: FPGA: Recv ZSGSRD 29828
17-03-17 23:24:45.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:45.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:45.268 -07 000000482 INF: FPGA: Recv ZSGSRD 29819
17-03-17 23:24:45.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:45.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:45.278 -07 000000502 INF: FPGA: Recv ZSGSRD 29826
17-03-17 23:24:45.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:45.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:45.288 -07 000000433 INF: FPGA: Recv ZSGSRD 29830
17-03-17 23:24:45.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:45.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:45.298 -07 000000429 INF: FPGA: Recv ZSGSRD 29823
17-03-17 23:24:45.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:45.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:45.308 -07 000000382 INF: FPGA: Recv ZSGSRD 29828
17-03-17 23:24:45.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:45.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:45.318 -07 000000502 INF: FPGA: Recv ZSGSRD 29826
17-03-17 23:24:45.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:45.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:45.328 -07 000000593 INF: FPGA: Recv ZSGSRD 29825
17-03-17 23:24:45.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:45.338 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:24:45.338 -07 000000480 INF: FPGA: Recv ZPIEZORD 25351
17-03-17 23:24:45.348 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:45.348 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.397 V. Piezo Error = -9.8 V.
17-03-17 23:24:45.348 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.9 um, Read 10 ADC samples: Avg = 29825 (-131.1 uncal um), Error = 0.8 uncal um, Median = 29826 (-131.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29819 (-131.1 uncal um), Max = 29830 (-131.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:24:45.348 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29825, posNoise = 5, negNoise = 6
17-03-17 23:24:45.348 -07 000000610 INF: Z Motor: After move to -0.131925, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:24:45.348 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 23:24:45.348 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:24:45.348 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:24:45.348 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:24:45.348 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:24:45.348 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:24:45.348 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:24:45.348 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:24:45.348 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:24:45.348 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 3 ms.
17-03-17 23:24:45.348 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:24:45.348 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:24:45.348 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:24:45.358 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:24:45.358 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:24:45.358 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:24:45.358 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:24:45.368 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 23:24:45.368 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 23:24:45.368 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 23:24:45.368 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 23:24:45.368 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 474 474 228 228 28996 150\n [Camera]
17-03-17 23:24:45.568 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:24:46.038 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 666
17-03-17 23:24:46.038 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 666
17-03-17 23:24:46.048 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:24:46.048 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 666
17-03-17 23:24:46.048 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 666
17-03-17 23:24:46.048 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:24:46.048 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:24:46.048 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1123698904, 0x0, 391868352) start.
17-03-17 23:24:46.048 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:24:46.048 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 23:24:46.238 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28996 859
17-03-17 23:24:46.388 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1009
17-03-17 23:24:46.428 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 23:24:46.428 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 23:24:46.428 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:24:46.428 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1123698904, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 23:24:46.428 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 23:24:46.428 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:24:46.428 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:24:46.428 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:24:46.428 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 23:24:46.438 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 23:24:46.608 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1237
17-03-17 23:24:46.618 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1237
17-03-17 23:24:46.618 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:24:46.618 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1237
17-03-17 23:24:46.618 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1237
17-03-17 23:24:46.618 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:24:46.618 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:24:46.618 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 23:24:46.628 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:24:46.628 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1092550816, 0x0, 418435064) start.
17-03-17 23:24:46.808 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1430
17-03-17 23:24:46.808 -07 000000551 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:24:46.808 -07 000000610 INF: FPGA: 'CAMDBLSNAP 474 474 228 228 28996 150' command took 2 ms to send, 1431 ms to get response, and 1436 ms overall
17-03-17 23:24:46.808 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:24:46.808 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22412109375, Z-Position -0.131925479139156. ------
17-03-17 23:24:46.808 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:24:46.808 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13836 mm
17-03-17 23:24:46.808 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:24:46.808 -07 000000501 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:24:46.818 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:24:46.818 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 23:24:46.818 -07 000000576 INF: Y Motor: Moving to 64.0626 mm, started at 63.2241 mm, delta = 0.8385 mm
17-03-17 23:24:46.818 -07 000000475 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:24:46.818 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 30224, sync = True, waitForSettling = False)
17-03-17 23:24:46.818 -07 000000502 INF: Z Motor: Moving to -0.138357 mm, started at -0.131925 mm, distance = -6.43 um
17-03-17 23:24:46.828 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:24:46.828 -07 000000382 INF: FPGA: Recv YRDPOS 129484
17-03-17 23:24:46.838 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:24:46.838 -07 000000576 INF: Y Motor: Encoder = 129484 = motor step 101159.4 = 63.2246 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:24:46.838 -07 000000502 INF: FPGA: Xmit ZDACW 30224\n [Z Motor]
17-03-17 23:24:46.838 -07 000000576 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:24:46.838 -07 000000576 INF: Y Motor: Moving 1341 steps-17
17-03-17 23:24:46.838 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 23:24:46.848 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:24:46.848 -07 000000502 INF: FPGA: 'ZDACW 30224' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 23:24:46.858 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:24:46.858 -07 000000482 INF: FPGA: Recv ZDACR 30224
17-03-17 23:24:46.868 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:24:46.868 -07 000000502 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-17 23:24:47.008 -07 000000462 INF: Camera: sBCa_ReadImage(785074704, 1092550816, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 23:24:47.008 -07 000000462 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 23:24:47.008 -07 000000462 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:24:47.008 -07 000000462 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:24:47.008 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 23:24:47.008 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 23:24:47.008 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:24:47.018 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:24:47.018 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 23:24:47.018 -07 000000462 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 23:24:47.018 -07 000000482 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:24:47.018 -07 000000475 INF: FPGA: 'FOCMRRFOC' command took 3 ms to send, 196 ms to get response, and 205 ms overall
17-03-17 23:24:47.068 -07 000000478 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:24:47.068 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 74. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1192, R2=1246, Total=2438. Warn if over 250 bubbles per interval.
17-03-17 23:24:47.218 -07 000000475 INF: FPGA: Recv YMVTILE
17-03-17 23:24:47.218 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall
17-03-17 23:24:47.268 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:24:47.268 -07 000000482 INF: FPGA: Recv YRDPOS 131189
17-03-17 23:24:47.278 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:24:47.278 -07 000000576 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:24:47.278 -07 000000576 INF: Y Motor: Position error before settling (table move) = -11 encoder counts (-0.005 mm)
17-03-17 23:24:47.278 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.838 mm, average velocity = 2.184 mm/sec
17-03-17 23:24:47.388 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 75, FrontChillerTemperature: 4.026244,
17-03-17 23:24:48.228 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:24:48.228 -07 000000462 INF: FPGA: Recv YRDPOS 131189
17-03-17 23:24:48.238 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:24:48.238 -07 000000576 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:24:48.258 -07 000000576 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:24:48.258 -07 000000576 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:24:48.258 -07 000000576 INF: Y Motor: Moved to 64.0571 after 1441 ms (table move)
17-03-17 23:24:48.258 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138357 mm (DAC = 30224)
17-03-17 23:24:48.258 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:48.268 -07 000000501 INF: FPGA: Recv ZSGSRD 30831
17-03-17 23:24:48.268 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:24:48.268 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:48.268 -07 000000502 INF: FPGA: Recv ZSGSRD 30821
17-03-17 23:24:48.278 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:24:48.278 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:48.278 -07 000000593 INF: FPGA: Recv ZSGSRD 30826
17-03-17 23:24:48.288 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:48.288 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:48.288 -07 000000475 INF: FPGA: Recv ZSGSRD 30831
17-03-17 23:24:48.298 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:48.298 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:48.298 -07 000000502 INF: FPGA: Recv ZSGSRD 30825
17-03-17 23:24:48.308 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:48.308 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:48.308 -07 000000382 INF: FPGA: Recv ZSGSRD 30825
17-03-17 23:24:48.318 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:48.318 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:48.318 -07 000000623 INF: FPGA: Recv ZSGSRD 30826
17-03-17 23:24:48.328 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:48.328 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:48.328 -07 000000462 INF: FPGA: Recv ZSGSRD 30823
17-03-17 23:24:48.338 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:48.338 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:48.338 -07 000000501 INF: FPGA: Recv ZSGSRD 30827
17-03-17 23:24:48.348 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:48.348 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:48.348 -07 000000475 INF: FPGA: Recv ZSGSRD 30826
17-03-17 23:24:48.358 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:48.358 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:24:48.358 -07 000000593 INF: FPGA: Recv ZPIEZORD 26660
17-03-17 23:24:48.368 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:48.368 -07 000000480 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.612 V. Piezo Error = -9.2 V.
17-03-17 23:24:48.368 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.4 um, Read 10 ADC samples: Avg = 30826 (-137.6 uncal um), Error = 0.8 uncal um, Median = 30826 (-137.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30821 (-137.5 uncal um), Max = 30831 (-137.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:24:48.368 -07 000000480 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30826, posNoise = 5, negNoise = 5
17-03-17 23:24:48.368 -07 000000480 INF: Z Motor: After move to -0.138357, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:24:48.368 -07 000000480 INF: Z Motor: Settle wait time = 1442 ms, measure time = 105 ms (allowed 150 ms), total time = 1547 ms
17-03-17 23:24:48.368 -07 000000480 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms
17-03-17 23:24:48.418 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-17 23:24:48.418 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:24:48.418 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:24:48.418 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:24:48.418 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:24:48.418 -07 000000478 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:24:48.418 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:24:48.428 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:24:48.428 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:24:48.428 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:24:48.428 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:24:48.428 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:24:48.438 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 23:24:48.438 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms.
17-03-17 23:24:48.438 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:24:48.478 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:24:48.678 -07 000000433 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:24:48.678 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:24:48.678 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:24:48.688 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1144848144, 0x0, 559484976) start.
17-03-17 23:24:48.718 -07 000000593 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:24:48.718 -07 000000482 INF: FPGA: Recv CAMSNAP
17-03-17 23:24:48.718 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 23:24:48.798 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1144848144, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 23:24:48.798 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:24:48.798 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 23:24:48.798 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms.
17-03-17 23:24:48.818 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:24:48.818 -07 000000593 INF: Autofocus start
17-03-17 23:24:48.818 -07 000000593 INF: MeasureProfile start
17-03-17 23:24:48.818 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:24:48.828 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:24:48.828 -07 000000475 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:24:48.838 -07 000000593 INF: MeasureProfile done
17-03-17 23:24:48.838 -07 000000593 INF: X=16  Z correction [um]=0.0530179
17-03-17 23:24:48.838 -07 000000593 INF: Autofocus finished
17-03-17 23:24:49.028 -07 000000486 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:24:49.028 -07 000000475 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:24:49.028 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.138356115493058. ----------
17-03-17 23:24:49.028 -07 000000610 INF: Cycle	75	Tile	6	Exposure Settings		A	474	G	228	T	228	C	474
17-03-17 23:24:49.038 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28749, sync = True, waitForSettling = True)
17-03-17 23:24:49.038 -07 000000610 INF: Z Motor: Moving to -0.131604 mm, started at -0.138356 mm, distance = 6.75 um
17-03-17 23:24:49.038 -07 000000610 INF: FPGA: Xmit ZDACW 28749\n [Z Motor]
17-03-17 23:24:49.038 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 23:24:49.048 -07 000000610 INF: FPGA: 'ZDACW 28749' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:24:49.048 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:24:49.048 -07 000000382 INF: FPGA: Recv ZDACR 28749
17-03-17 23:24:49.058 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:49.058 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:24:49.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:49.208 -07 000000501 INF: FPGA: Recv ZSGSRD 29780
17-03-17 23:24:49.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:24:49.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:49.218 -07 000000462 INF: FPGA: Recv ZSGSRD 29779
17-03-17 23:24:49.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:49.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:49.228 -07 000000482 INF: FPGA: Recv ZSGSRD 29778
17-03-17 23:24:49.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:49.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:49.238 -07 000000480 INF: FPGA: Recv ZSGSRD 29782
17-03-17 23:24:49.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:49.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:49.248 -07 000000593 INF: FPGA: Recv ZSGSRD 29777
17-03-17 23:24:49.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:49.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:49.258 -07 000000475 INF: FPGA: Recv ZSGSRD 29775
17-03-17 23:24:49.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:49.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:49.268 -07 000000482 INF: FPGA: Recv ZSGSRD 29775
17-03-17 23:24:49.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:49.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:49.278 -07 000000480 INF: FPGA: Recv ZSGSRD 29777
17-03-17 23:24:49.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:49.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:49.288 -07 000000593 INF: FPGA: Recv ZSGSRD 29773
17-03-17 23:24:49.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:49.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:49.298 -07 000000462 INF: FPGA: Recv ZSGSRD 29775
17-03-17 23:24:49.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:49.308 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:24:49.308 -07 000000482 INF: FPGA: Recv ZPIEZORD 25274
17-03-17 23:24:49.318 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:49.318 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.387 V. Piezo Error = -9.9 V.
17-03-17 23:24:49.318 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.6 um, Read 10 ADC samples: Avg = 29777 (-130.8 uncal um), Error = 0.8 uncal um, Median = 29777 (-130.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29773 (-130.8 uncal um), Max = 29782 (-130.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:24:49.318 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29777, posNoise = 5, negNoise = 4
17-03-17 23:24:49.318 -07 000000610 INF: Z Motor: After move to -0.131604, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:24:49.318 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 23:24:49.318 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:24:49.318 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:24:49.318 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:24:49.318 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:24:49.318 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:24:49.318 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:24:49.318 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:24:49.318 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:24:49.318 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 23:24:49.318 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:24:49.318 -07 000000593 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:24:49.318 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:24:49.328 -07 000000593 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:24:49.328 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:24:49.328 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:24:49.328 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:24:49.338 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 23:24:49.338 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:24:49.338 -07 000000593 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 23:24:49.338 -07 000000593 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 23:24:49.338 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 474 474 228 228 28925 150\n [Camera]
17-03-17 23:24:49.538 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:24:50.008 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 666
17-03-17 23:24:50.008 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 666
17-03-17 23:24:50.008 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:24:50.018 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 666
17-03-17 23:24:50.018 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 666
17-03-17 23:24:50.018 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:24:50.018 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:24:50.018 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 23:24:50.018 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:24:50.018 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 23:24:50.208 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28925 859
17-03-17 23:24:50.358 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1009
17-03-17 23:24:50.398 -07 000000551 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 23:24:50.498 -07 000000551 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 23:24:50.498 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 481 ms.
17-03-17 23:24:50.498 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 482 ms.
17-03-17 23:24:50.498 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:24:50.498 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:24:50.508 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:24:50.508 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 492 ms.
17-03-17 23:24:50.508 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 23:24:50.508 -07 000000551 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 496 ms.
17-03-17 23:24:50.578 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1237
17-03-17 23:24:50.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1237
17-03-17 23:24:50.588 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:24:50.588 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1237
17-03-17 23:24:50.588 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1237
17-03-17 23:24:50.588 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:24:50.588 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:24:50.588 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 23:24:50.588 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:24:50.588 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 23:24:50.778 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1429
17-03-17 23:24:50.778 -07 000000433 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:24:50.778 -07 000000610 INF: FPGA: 'CAMDBLSNAP 474 474 228 228 28925 150' command took 2 ms to send, 1431 ms to get response, and 1436 ms overall
17-03-17 23:24:50.778 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:24:50.778 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05712890625, Z-Position -0.131617116956351. ------
17-03-17 23:24:50.778 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:24:50.778 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13824 mm
17-03-17 23:24:50.778 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:24:50.788 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:24:50.788 -07 000000551 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 23:24:50.788 -07 000000551 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-17 23:24:50.788 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:24:50.788 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:24:50.788 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 30199, sync = True, waitForSettling = False)
17-03-17 23:24:50.788 -07 000000502 INF: Z Motor: Moving to -0.138242 mm, started at -0.131617 mm, distance = -6.63 um
17-03-17 23:24:50.788 -07 000000593 INF: FPGA: Recv YRDPOS 131189
17-03-17 23:24:50.798 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:24:50.798 -07 000000551 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:24:50.798 -07 000000551 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:24:50.798 -07 000000551 INF: Y Motor: Moving 1337 steps-11
17-03-17 23:24:50.798 -07 000000502 INF: FPGA: Xmit ZDACW 30199\n [Z Motor]
17-03-17 23:24:50.798 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 23:24:50.808 -07 000000502 INF: FPGA: 'ZDACW 30199' command took 1 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 23:24:50.808 -07 000000478 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:24:50.818 -07 000000551 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:24:50.828 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:24:50.828 -07 000000482 INF: FPGA: Recv ZDACR 30199
17-03-17 23:24:50.838 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:24:50.838 -07 000000502 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 23:24:50.988 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 23:24:50.988 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 23:24:50.988 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:24:50.988 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 23:24:50.988 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 23:24:50.988 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:24:50.998 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:24:50.998 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms.
17-03-17 23:24:50.998 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:24:51.008 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-17 23:24:51.008 -07 000000475 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:24:51.008 -07 000000478 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 221 ms overall
17-03-17 23:24:51.188 -07 000000475 INF: FPGA: Recv YMVTILE
17-03-17 23:24:51.188 -07 000000551 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 23:24:51.228 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:24:51.238 -07 000000478 INF: FPGA: Recv YRDPOS 132872
17-03-17 23:24:51.238 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 23:24:51.238 -07 000000551 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:24:51.238 -07 000000551 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 23:24:51.238 -07 000000551 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.835 mm, average velocity = 2.099 mm/sec
17-03-17 23:24:52.068 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:24:52.068 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 74. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1192, R2=1246, Total=2438. Warn if over 250 bubbles per interval.
17-03-17 23:24:52.188 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:24:52.188 -07 000000475 INF: FPGA: Recv YRDPOS 132872
17-03-17 23:24:52.198 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:52.198 -07 000000551 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:24:52.218 -07 000000551 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:24:52.218 -07 000000551 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:24:52.218 -07 000000551 INF: Y Motor: Moved to 64.8789 after 1435 ms (table move)
17-03-17 23:24:52.228 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138242 mm (DAC = 30199)
17-03-17 23:24:52.228 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:52.228 -07 000000593 INF: FPGA: Recv ZSGSRD 30810
17-03-17 23:24:52.238 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:24:52.238 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:52.238 -07 000000462 INF: FPGA: Recv ZSGSRD 30810
17-03-17 23:24:52.248 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:52.248 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:52.248 -07 000000593 INF: FPGA: Recv ZSGSRD 30813
17-03-17 23:24:52.258 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:52.258 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:52.258 -07 000000502 INF: FPGA: Recv ZSGSRD 30808
17-03-17 23:24:52.268 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:52.268 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:52.268 -07 000000433 INF: FPGA: Recv ZSGSRD 30814
17-03-17 23:24:52.278 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:52.278 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:52.278 -07 000000501 INF: FPGA: Recv ZSGSRD 30817
17-03-17 23:24:52.288 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:52.288 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:52.288 -07 000000382 INF: FPGA: Recv ZSGSRD 30806
17-03-17 23:24:52.298 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:52.298 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:52.298 -07 000000623 INF: FPGA: Recv ZSGSRD 30808
17-03-17 23:24:52.308 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:52.308 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:52.308 -07 000000501 INF: FPGA: Recv ZSGSRD 30806
17-03-17 23:24:52.318 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:52.318 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:52.318 -07 000000623 INF: FPGA: Recv ZSGSRD 30804
17-03-17 23:24:52.328 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:52.328 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:24:52.328 -07 000000593 INF: FPGA: Recv ZPIEZORD 26687
17-03-17 23:24:52.338 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:52.338 -07 000000576 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.608 V. Piezo Error = -9.1 V.
17-03-17 23:24:52.338 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.2 um, Read 10 ADC samples: Avg = 30810 (-137.5 uncal um), Error = 0.8 uncal um, Median = 30809 (-137.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30804 (-137.4 uncal um), Max = 30817 (-137.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:24:52.338 -07 000000576 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30810, posNoise = 7, negNoise = 6
17-03-17 23:24:52.338 -07 000000576 INF: Z Motor: After move to -0.138242, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:24:52.338 -07 000000576 INF: Z Motor: Settle wait time = 1439 ms, measure time = 109 ms (allowed 150 ms), total time = 1548 ms
17-03-17 23:24:52.338 -07 000000576 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 23:24:52.388 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-17 23:24:52.388 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:24:52.388 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:24:52.388 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:24:52.388 -07 000000551 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:24:52.388 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:24:52.388 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:24:52.388 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:24:52.388 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:24:52.388 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:24:52.398 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:24:52.398 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:24:52.408 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 23:24:52.408 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 23:24:52.408 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:24:52.458 -07 000000482 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:24:52.658 -07 000000433 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:24:52.658 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:24:52.658 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:24:52.658 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1130172064, 0x0, 559484976) start.
17-03-17 23:24:52.698 -07 000000480 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:24:52.698 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-17 23:24:52.698 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 281 ms to get response, and 284 ms overall
17-03-17 23:24:52.758 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 75, FrontChillerTemperature: 3.977204,
17-03-17 23:24:52.768 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1130172064, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 23:24:52.768 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:24:52.778 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:24:52.778 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 23:24:52.798 -07 000000480 INF: Autofocus start
17-03-17 23:24:52.798 -07 000000480 INF: MeasureProfile start
17-03-17 23:24:52.808 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:24:52.808 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:24:52.808 -07 000000480 INF: MeasureProfile done
17-03-17 23:24:52.808 -07 000000480 INF: X=-96  Z correction [um]=-0.4707136
17-03-17 23:24:52.808 -07 000000480 INF: Autofocus finished
17-03-17 23:24:52.818 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 23:24:52.818 -07 000000433 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:24:53.018 -07 000000502 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:24:53.018 -07 000000433 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:24:53.018 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.13825332809879. ----------
17-03-17 23:24:53.018 -07 000000610 INF: Cycle	75	Tile	7	Exposure Settings		A	474	G	228	T	228	C	474
17-03-17 23:24:53.028 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28609, sync = True, waitForSettling = True)
17-03-17 23:24:53.028 -07 000000610 INF: Z Motor: Moving to -0.130964 mm, started at -0.138253 mm, distance = 7.29 um
17-03-17 23:24:53.028 -07 000000610 INF: FPGA: Xmit ZDACW 28609\n [Z Motor]
17-03-17 23:24:53.028 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 23:24:53.038 -07 000000610 INF: FPGA: 'ZDACW 28609' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:24:53.038 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:24:53.038 -07 000000433 INF: FPGA: Recv ZDACR 28609
17-03-17 23:24:53.048 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:53.048 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:24:53.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:53.198 -07 000000486 INF: FPGA: Recv ZSGSRD 29676
17-03-17 23:24:53.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:24:53.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:53.208 -07 000000475 INF: FPGA: Recv ZSGSRD 29681
17-03-17 23:24:53.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:53.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:53.218 -07 000000486 INF: FPGA: Recv ZSGSRD 29673
17-03-17 23:24:53.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:53.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:53.228 -07 000000501 INF: FPGA: Recv ZSGSRD 29679
17-03-17 23:24:53.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:53.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:53.238 -07 000000576 INF: FPGA: Recv ZSGSRD 29674
17-03-17 23:24:53.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:53.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:53.248 -07 000000486 INF: FPGA: Recv ZSGSRD 29675
17-03-17 23:24:53.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:53.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:53.258 -07 000000501 INF: FPGA: Recv ZSGSRD 29675
17-03-17 23:24:53.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:53.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:53.268 -07 000000475 INF: FPGA: Recv ZSGSRD 29672
17-03-17 23:24:53.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:53.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:53.278 -07 000000486 INF: FPGA: Recv ZSGSRD 29680
17-03-17 23:24:53.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:53.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:53.288 -07 000000475 INF: FPGA: Recv ZSGSRD 29677
17-03-17 23:24:53.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:53.298 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:24:53.298 -07 000000502 INF: FPGA: Recv ZPIEZORD 25236
17-03-17 23:24:53.308 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:53.308 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.365 V. Piezo Error = -9.7 V.
17-03-17 23:24:53.308 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.0 um, Read 10 ADC samples: Avg = 29676 (-130.2 uncal um), Error = 0.8 uncal um, Median = 29676 (-130.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29672 (-130.2 uncal um), Max = 29681 (-130.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:24:53.308 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29676, posNoise = 5, negNoise = 4
17-03-17 23:24:53.308 -07 000000610 INF: Z Motor: After move to -0.130964, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:24:53.308 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 23:24:53.308 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:24:53.308 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:24:53.318 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:24:53.318 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:24:53.318 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:24:53.318 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:24:53.318 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:24:53.318 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:24:53.318 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:24:53.318 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:24:53.318 -07 000000501 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 23:24:53.318 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:24:53.318 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:24:53.318 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:24:53.318 -07 000000501 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 23:24:53.318 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:24:53.328 -07 000000501 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 23:24:53.328 -07 000000501 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 23:24:53.328 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 23:24:53.328 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:24:53.328 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 474 474 228 228 28786 150\n [Camera]
17-03-17 23:24:53.528 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:24:54.008 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 666
17-03-17 23:24:54.008 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 666
17-03-17 23:24:54.008 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:24:54.008 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 666
17-03-17 23:24:54.008 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 666
17-03-17 23:24:54.008 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:24:54.008 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:24:54.008 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 23:24:54.008 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:24:54.008 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 23:24:54.198 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28786 859
17-03-17 23:24:54.348 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1009
17-03-17 23:24:54.378 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 23:24:54.378 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 23:24:54.378 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:24:54.388 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 374 ms.
17-03-17 23:24:54.388 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-17 23:24:54.388 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:24:54.388 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:24:54.388 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:24:54.388 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 23:24:54.388 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 23:24:54.578 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1237
17-03-17 23:24:54.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1237
17-03-17 23:24:54.578 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:24:54.578 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1237
17-03-17 23:24:54.578 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1237
17-03-17 23:24:54.578 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:24:54.578 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) start.
17-03-17 23:24:54.578 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:24:54.578 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:24:54.578 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2216660184, 0x0, 418435064) start.
17-03-17 23:24:54.768 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1430
17-03-17 23:24:54.768 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:24:54.768 -07 000000610 INF: FPGA: 'CAMDBLSNAP 474 474 228 228 28786 150' command took 2 ms to send, 1434 ms to get response, and 1437 ms overall
17-03-17 23:24:54.768 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:24:54.768 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87890625, Z-Position -0.130968271530033. ------
17-03-17 23:24:54.778 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:24:54.778 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13760 mm
17-03-17 23:24:54.778 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:24:54.778 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:24:54.778 -07 000000486 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 23:24:54.778 -07 000000486 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm
17-03-17 23:24:54.778 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 30058, sync = True, waitForSettling = False)
17-03-17 23:24:54.778 -07 000000576 INF: Z Motor: Moving to -0.137597 mm, started at -0.130968 mm, distance = -6.63 um
17-03-17 23:24:54.788 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:24:54.788 -07 000000576 INF: FPGA: Xmit ZDACW 30058\n [Z Motor]
17-03-17 23:24:54.788 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 23:24:54.798 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:24:54.798 -07 000000576 INF: FPGA: 'ZDACW 30058' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 23:24:54.798 -07 000000502 INF: FPGA: Recv YRDPOS 132873
17-03-17 23:24:54.808 -07 000000475 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:24:54.808 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 23:24:54.808 -07 000000486 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:24:54.808 -07 000000486 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:24:54.808 -07 000000486 INF: Y Motor: Moving 1349 steps-28
17-03-17 23:24:54.818 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:24:54.818 -07 000000502 INF: FPGA: Recv ZDACR 30058
17-03-17 23:24:54.828 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:24:54.828 -07 000000576 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet))
17-03-17 23:24:54.828 -07 000000486 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:24:54.978 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2216660184, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 23:24:54.978 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 23:24:54.978 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:24:54.978 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) end. Duration was 398 ms.
17-03-17 23:24:54.978 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 23:24:54.978 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:24:54.978 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:24:54.978 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:24:54.978 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 23:24:54.988 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms.
17-03-17 23:24:55.008 -07 000000623 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:24:55.008 -07 000000475 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 23:24:55.198 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-17 23:24:55.198 -07 000000486 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 23:24:55.248 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:24:55.248 -07 000000623 INF: FPGA: Recv YRDPOS 134582
17-03-17 23:24:55.258 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:24:55.258 -07 000000486 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:24:55.258 -07 000000486 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 23:24:55.258 -07 000000486 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.844 mm, average velocity = 2.147 mm/sec
17-03-17 23:24:56.208 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:24:56.208 -07 000000433 INF: FPGA: Recv YRDPOS 134582
17-03-17 23:24:56.218 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:24:56.218 -07 000000486 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:24:56.238 -07 000000486 INF: Y Motor: After move to 65.722610, error = -0.008743, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:24:56.238 -07 000000486 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:24:56.238 -07 000000486 INF: Y Motor: Moved to 65.7139 after 1465 ms (table move)
17-03-17 23:24:56.248 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137597 mm (DAC = 30058)
17-03-17 23:24:56.248 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:56.248 -07 000000486 INF: FPGA: Recv ZSGSRD 30712
17-03-17 23:24:56.258 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:24:56.258 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:56.258 -07 000000482 INF: FPGA: Recv ZSGSRD 30710
17-03-17 23:24:56.268 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:56.268 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:56.268 -07 000000480 INF: FPGA: Recv ZSGSRD 30713
17-03-17 23:24:56.278 -07 000000382 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:56.278 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:56.278 -07 000000480 INF: FPGA: Recv ZSGSRD 30714
17-03-17 23:24:56.288 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:56.288 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:56.288 -07 000000480 INF: FPGA: Recv ZSGSRD 30708
17-03-17 23:24:56.298 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:56.298 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:56.298 -07 000000480 INF: FPGA: Recv ZSGSRD 30710
17-03-17 23:24:56.308 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:56.308 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:56.308 -07 000000480 INF: FPGA: Recv ZSGSRD 30704
17-03-17 23:24:56.318 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:56.318 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:56.318 -07 000000480 INF: FPGA: Recv ZSGSRD 30704
17-03-17 23:24:56.328 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:56.328 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:56.328 -07 000000480 INF: FPGA: Recv ZSGSRD 30713
17-03-17 23:24:56.338 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:56.338 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:56.338 -07 000000480 INF: FPGA: Recv ZSGSRD 30712
17-03-17 23:24:56.348 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:56.348 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:24:56.348 -07 000000480 INF: FPGA: Recv ZPIEZORD 26588
17-03-17 23:24:56.358 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:56.358 -07 000000382 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.587 V. Piezo Error = -9.1 V.
17-03-17 23:24:56.358 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.6 um, Read 10 ADC samples: Avg = 30710 (-136.8 uncal um), Error = 0.8 uncal um, Median = 30711 (-136.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30704 (-136.8 uncal um), Max = 30714 (-136.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:24:56.358 -07 000000382 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30710, posNoise = 4, negNoise = 6
17-03-17 23:24:56.358 -07 000000382 INF: Z Motor: After move to -0.137597, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:24:56.358 -07 000000382 INF: Z Motor: Settle wait time = 1468 ms, measure time = 107 ms (allowed 150 ms), total time = 1575 ms
17-03-17 23:24:56.358 -07 000000382 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 23:24:56.408 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1628 ms
17-03-17 23:24:56.408 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:24:56.408 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:24:56.408 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:24:56.408 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:24:56.408 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:24:56.408 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:24:56.408 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:24:56.408 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:24:56.408 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:24:56.418 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:24:56.418 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:24:56.418 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 23:24:56.418 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 23:24:56.428 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:24:56.468 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:24:56.668 -07 000000551 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:24:56.668 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:24:56.668 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:24:56.668 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) start.
17-03-17 23:24:56.708 -07 000000480 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:24:56.708 -07 000000486 INF: FPGA: Recv CAMSNAP
17-03-17 23:24:56.708 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 285 ms overall
17-03-17 23:24:56.788 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) end. Duration was 118 ms.
17-03-17 23:24:56.788 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:24:56.788 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 23:24:56.788 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-17 23:24:56.808 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:24:56.808 -07 000000433 INF: Autofocus start
17-03-17 23:24:56.808 -07 000000433 INF: MeasureProfile start
17-03-17 23:24:56.808 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:24:56.818 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 2 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:24:56.818 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:24:56.828 -07 000000433 INF: MeasureProfile done
17-03-17 23:24:56.828 -07 000000433 INF: X=27  Z correction [um]=0.1059322
17-03-17 23:24:56.828 -07 000000433 INF: Autofocus finished
17-03-17 23:24:57.018 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:24:57.018 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:24:57.018 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.7138671875, Z-position -0.137610906884614. ----------
17-03-17 23:24:57.018 -07 000000610 INF: Cycle	75	Tile	8	Exposure Settings		A	474	G	228	T	228	C	474
17-03-17 23:24:57.028 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28594, sync = True, waitForSettling = True)
17-03-17 23:24:57.028 -07 000000610 INF: Z Motor: Moving to -0.130895 mm, started at -0.137611 mm, distance = 6.72 um
17-03-17 23:24:57.028 -07 000000610 INF: FPGA: Xmit ZDACW 28594\n [Z Motor]
17-03-17 23:24:57.028 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 23:24:57.038 -07 000000610 INF: FPGA: 'ZDACW 28594' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:24:57.038 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:24:57.038 -07 000000433 INF: FPGA: Recv ZDACR 28594
17-03-17 23:24:57.048 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:57.048 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:24:57.068 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:24:57.068 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 74. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1192, R2=1246, Total=2438. Warn if over 250 bubbles per interval.
17-03-17 23:24:57.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:57.198 -07 000000475 INF: FPGA: Recv ZSGSRD 29665
17-03-17 23:24:57.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:24:57.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:57.208 -07 000000462 INF: FPGA: Recv ZSGSRD 29673
17-03-17 23:24:57.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:57.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:57.218 -07 000000576 INF: FPGA: Recv ZSGSRD 29667
17-03-17 23:24:57.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:57.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:57.228 -07 000000551 INF: FPGA: Recv ZSGSRD 29662
17-03-17 23:24:57.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:57.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:57.238 -07 000000462 INF: FPGA: Recv ZSGSRD 29668
17-03-17 23:24:57.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:57.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:57.248 -07 000000551 INF: FPGA: Recv ZSGSRD 29669
17-03-17 23:24:57.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:57.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:57.258 -07 000000576 INF: FPGA: Recv ZSGSRD 29666
17-03-17 23:24:57.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:57.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:57.268 -07 000000475 INF: FPGA: Recv ZSGSRD 29661
17-03-17 23:24:57.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:57.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:57.278 -07 000000462 INF: FPGA: Recv ZSGSRD 29665
17-03-17 23:24:57.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:57.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:24:57.288 -07 000000551 INF: FPGA: Recv ZSGSRD 29666
17-03-17 23:24:57.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:57.298 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:24:57.298 -07 000000576 INF: FPGA: Recv ZPIEZORD 25226
17-03-17 23:24:57.308 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:24:57.308 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.363 V. Piezo Error = -9.7 V.
17-03-17 23:24:57.308 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.9 um, Read 10 ADC samples: Avg = 29666 (-130.1 uncal um), Error = 0.8 uncal um, Median = 29666 (-130.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29661 (-130.1 uncal um), Max = 29673 (-130.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:24:57.308 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29666, posNoise = 7, negNoise = 5
17-03-17 23:24:57.308 -07 000000610 INF: Z Motor: After move to -0.130895, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:24:57.308 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 23:24:57.308 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:24:57.308 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:24:57.308 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:24:57.308 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:24:57.308 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:24:57.308 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:24:57.308 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:24:57.308 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:24:57.308 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:24:57.308 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:24:57.308 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:24:57.308 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:24:57.318 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:24:57.318 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:24:57.318 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:24:57.318 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:24:57.328 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 23:24:57.328 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 23:24:57.328 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 23:24:57.328 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:24:57.328 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 474 474 228 228 28770 150\n [Camera]
17-03-17 23:24:57.528 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:24:57.998 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 666
17-03-17 23:24:57.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 666
17-03-17 23:24:57.998 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:24:57.998 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:24:58.008 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 23:24:58.008 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 666
17-03-17 23:24:58.008 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 666
17-03-17 23:24:58.008 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:24:58.008 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:24:58.008 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 23:24:58.138 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 75, FrontChillerTemperature: 3.975845,
17-03-17 23:24:58.198 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28770 859
17-03-17 23:24:58.348 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1011
17-03-17 23:24:58.388 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 23:24:58.388 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 23:24:58.388 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:24:58.388 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 23:24:58.388 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 23:24:58.388 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:24:58.398 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 23:24:58.398 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 23:24:58.398 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 23:24:58.398 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 23:24:58.568 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1237
17-03-17 23:24:58.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1237
17-03-17 23:24:58.578 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:24:58.578 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1237
17-03-17 23:24:58.578 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:24:58.578 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1237
17-03-17 23:24:58.578 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 23:24:58.578 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:24:58.578 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:24:58.578 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 23:24:58.768 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP 1433
17-03-17 23:24:58.768 -07 000000475 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:24:58.768 -07 000000610 INF: FPGA: 'CAMDBLSNAP 474 474 228 228 28770 150' command took 2 ms to send, 1435 ms to get response, and 1440 ms overall
17-03-17 23:24:58.768 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:24:58.768 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.7138671875, Z-Position -0.130904029408616. ------
17-03-17 23:24:58.768 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:24:58.768 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13729 mm
17-03-17 23:24:58.768 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:24:58.778 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:24:58.778 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 4 ms to get response, and 5 ms overall
17-03-17 23:24:58.778 -07 000000486 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:24:58.778 -07 000000382 INF: Z Motor: Entering MoveAbsStepped (DAC = 29991, sync = True, waitForSettling = False)
17-03-17 23:24:58.778 -07 000000382 INF: Z Motor: Moving to -0.137290 mm, started at -0.130904 mm, distance = -6.39 um
17-03-17 23:24:58.778 -07 000000482 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 23:24:58.778 -07 000000482 INF: Y Motor: Moving to 66.5526 mm, started at 65.7139 mm, delta = 0.8387 mm
17-03-17 23:24:58.788 -07 000000382 INF: FPGA: Xmit ZDACW 29991\n [Z Motor]
17-03-17 23:24:58.788 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 23:24:58.798 -07 000000382 INF: FPGA: 'ZDACW 29991' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 23:24:58.798 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:24:58.798 -07 000000462 INF: FPGA: Recv YRDPOS 134583
17-03-17 23:24:58.808 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall
17-03-17 23:24:58.808 -07 000000482 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:24:58.808 -07 000000382 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:24:58.808 -07 000000462 INF: FPGA: Recv ZDACR 29991
17-03-17 23:24:58.808 -07 000000482 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:24:58.808 -07 000000482 INF: Y Motor: Moving 1341 steps-18
17-03-17 23:24:58.818 -07 000000382 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:24:58.818 -07 000000382 INF: Z Motor: MoveAbsStepped took 34 ms (did NOT wait for settling yet))
17-03-17 23:24:58.818 -07 000000482 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:24:58.968 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 390 ms.
17-03-17 23:24:58.968 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 23:24:58.968 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:24:58.968 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 23:24:58.968 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 23:24:58.968 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:24:58.968 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:24:58.968 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:24:58.978 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 23:24:58.978 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 23:24:58.978 -07 000000551 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:24:58.978 -07 000000486 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 198 ms to get response, and 202 ms overall
17-03-17 23:24:59.188 -07 000000623 INF: FPGA: Recv YMVTILE
17-03-17 23:24:59.188 -07 000000482 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 383 ms overall
17-03-17 23:24:59.238 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:24:59.238 -07 000000551 INF: FPGA: Recv YRDPOS 136272
17-03-17 23:24:59.248 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:24:59.248 -07 000000482 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:24:59.248 -07 000000482 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 23:24:59.248 -07 000000482 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 383 ms, distance = 0.839 mm, average velocity = 2.190 mm/sec
17-03-17 23:25:00.198 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:25:00.198 -07 000000382 INF: FPGA: Recv YRDPOS 136272
17-03-17 23:25:00.208 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:00.208 -07 000000482 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:25:00.228 -07 000000482 INF: Y Motor: After move to 66.552605, error = -0.013542, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:25:00.228 -07 000000482 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:25:00.228 -07 000000482 INF: Y Motor: Moved to 66.5391 after 1452 ms (table move)
17-03-17 23:25:00.238 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137290 mm (DAC = 29991)
17-03-17 23:25:00.238 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:00.238 -07 000000486 INF: FPGA: Recv ZSGSRD 30653
17-03-17 23:25:00.248 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:25:00.248 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:00.248 -07 000000462 INF: FPGA: Recv ZSGSRD 30665
17-03-17 23:25:00.258 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:00.258 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:00.258 -07 000000475 INF: FPGA: Recv ZSGSRD 30658
17-03-17 23:25:00.268 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:00.268 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:00.268 -07 000000486 INF: FPGA: Recv ZSGSRD 30661
17-03-17 23:25:00.278 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:00.278 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:00.278 -07 000000382 INF: FPGA: Recv ZSGSRD 30663
17-03-17 23:25:00.288 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:00.288 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:00.288 -07 000000475 INF: FPGA: Recv ZSGSRD 30661
17-03-17 23:25:00.298 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:00.298 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:00.298 -07 000000486 INF: FPGA: Recv ZSGSRD 30654
17-03-17 23:25:00.308 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:00.308 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:00.308 -07 000000462 INF: FPGA: Recv ZSGSRD 30659
17-03-17 23:25:00.318 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:00.318 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:00.318 -07 000000501 INF: FPGA: Recv ZSGSRD 30663
17-03-17 23:25:00.328 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:00.328 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:00.328 -07 000000462 INF: FPGA: Recv ZSGSRD 30661
17-03-17 23:25:00.338 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:00.338 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:25:00.338 -07 000000482 INF: FPGA: Recv ZPIEZORD 26529
17-03-17 23:25:00.348 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:00.348 -07 000000576 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.576 V. Piezo Error = -9.1 V.
17-03-17 23:25:00.348 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.3 um, Read 10 ADC samples: Avg = 30660 (-136.5 uncal um), Error = 0.8 uncal um, Median = 30661 (-136.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30653 (-136.4 uncal um), Max = 30665 (-136.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 23:25:00.348 -07 000000576 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30660, posNoise = 5, negNoise = 7
17-03-17 23:25:00.348 -07 000000576 INF: Z Motor: After move to -0.137290, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:25:00.348 -07 000000576 INF: Z Motor: Settle wait time = 1456 ms, measure time = 108 ms (allowed 150 ms), total time = 1564 ms
17-03-17 23:25:00.348 -07 000000576 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 23:25:00.398 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1620 ms
17-03-17 23:25:00.398 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:25:00.398 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:25:00.398 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:25:00.398 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:25:00.398 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:25:00.398 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:25:00.398 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:25:00.398 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:25:00.398 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:25:00.408 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 23:25:00.408 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:25:00.418 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 23:25:00.418 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 23:25:00.418 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:25:00.468 -07 000000482 INF: FPGA: Recv @CAMSNAP turning led on 42
17-03-17 23:25:00.668 -07 000000486 INF: FPGA: Recv @CAMSNAP img rdy 242
17-03-17 23:25:00.668 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 242
17-03-17 23:25:00.668 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:25:00.668 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-17 23:25:00.708 -07 000000576 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:25:00.708 -07 000000475 INF: FPGA: Recv CAMSNAP
17-03-17 23:25:00.708 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 23:25:00.788 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 23:25:00.788 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:25:00.788 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:25:00.788 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 23:25:00.808 -07 000000576 INF: Autofocus start
17-03-17 23:25:00.808 -07 000000576 INF: MeasureProfile start
17-03-17 23:25:00.808 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:25:00.808 -07 000000462 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:25:00.818 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:25:00.818 -07 000000623 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:25:00.818 -07 000000576 INF: MeasureProfile done
17-03-17 23:25:00.818 -07 000000576 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 23:25:00.818 -07 000000576 INF: Autofocus finished
17-03-17 23:25:01.018 -07 000000501 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:25:01.018 -07 000000623 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:25:01.018 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5390625, Z-position -0.137289696277526. ----------
17-03-17 23:25:01.018 -07 000000610 INF: Cycle	75	Tile	9	Exposure Settings		A	474	G	228	T	228	C	474
17-03-17 23:25:01.018 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28486, sync = True, waitForSettling = True)
17-03-17 23:25:01.028 -07 000000610 INF: Z Motor: Moving to -0.130401 mm, started at -0.137290 mm, distance = 6.89 um
17-03-17 23:25:01.028 -07 000000610 INF: FPGA: Xmit ZDACW 28486\n [Z Motor]
17-03-17 23:25:01.028 -07 000000501 INF: FPGA: Recv ZDACW
17-03-17 23:25:01.038 -07 000000610 INF: FPGA: 'ZDACW 28486' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:01.038 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:25:01.038 -07 000000382 INF: FPGA: Recv ZDACR 28486
17-03-17 23:25:01.048 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:01.048 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:25:01.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:01.198 -07 000000486 INF: FPGA: Recv ZSGSRD 29588
17-03-17 23:25:01.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:25:01.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:01.208 -07 000000475 INF: FPGA: Recv ZSGSRD 29590
17-03-17 23:25:01.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:01.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:01.218 -07 000000482 INF: FPGA: Recv ZSGSRD 29585
17-03-17 23:25:01.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:01.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:01.228 -07 000000475 INF: FPGA: Recv ZSGSRD 29589
17-03-17 23:25:01.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:01.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:01.238 -07 000000462 INF: FPGA: Recv ZSGSRD 29590
17-03-17 23:25:01.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:01.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:01.248 -07 000000576 INF: FPGA: Recv ZSGSRD 29592
17-03-17 23:25:01.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:01.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:01.258 -07 000000576 INF: FPGA: Recv ZSGSRD 29590
17-03-17 23:25:01.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:01.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:01.268 -07 000000475 INF: FPGA: Recv ZSGSRD 29583
17-03-17 23:25:01.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:01.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:01.278 -07 000000482 INF: FPGA: Recv ZSGSRD 29588
17-03-17 23:25:01.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:01.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:01.288 -07 000000462 INF: FPGA: Recv ZSGSRD 29592
17-03-17 23:25:01.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:01.298 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:25:01.298 -07 000000576 INF: FPGA: Recv ZPIEZORD 25151
17-03-17 23:25:01.308 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:01.308 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.347 V. Piezo Error = -9.7 V.
17-03-17 23:25:01.308 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.4 um, Read 10 ADC samples: Avg = 29589 (-129.6 uncal um), Error = 0.8 uncal um, Median = 29590 (-129.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29583 (-129.6 uncal um), Max = 29592 (-129.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:25:01.308 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29589, posNoise = 3, negNoise = 6
17-03-17 23:25:01.308 -07 000000610 INF: Z Motor: After move to -0.130401, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:25:01.308 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 23:25:01.308 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:25:01.308 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:25:01.308 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:25:01.308 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:25:01.308 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:25:01.308 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:25:01.308 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:25:01.308 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:25:01.308 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:25:01.308 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:25:01.308 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:25:01.308 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:25:01.308 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:25:01.308 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:25:01.318 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:25:01.318 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:25:01.328 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 23:25:01.328 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 23:25:01.328 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 23:25:01.328 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:25:01.328 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 474 474 228 228 28663 150\n [Camera]
17-03-17 23:25:01.528 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:25:01.998 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 666
17-03-17 23:25:01.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 666
17-03-17 23:25:02.008 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:25:02.008 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:25:02.008 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-17 23:25:02.008 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 666
17-03-17 23:25:02.008 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 666
17-03-17 23:25:02.008 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:25:02.008 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:25:02.008 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-17 23:25:02.068 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:25:02.068 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 74. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1192, R2=1246, Total=2438. Warn if over 250 bubbles per interval.
17-03-17 23:25:02.198 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28663 859
17-03-17 23:25:02.348 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1011
17-03-17 23:25:02.378 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 23:25:02.378 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 23:25:02.378 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:25:02.378 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 23:25:02.378 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 23:25:02.378 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:25:02.388 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 23:25:02.388 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 23:25:02.388 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 23:25:02.398 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 23:25:02.568 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1237
17-03-17 23:25:02.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1237
17-03-17 23:25:02.578 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:25:02.578 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:25:02.578 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 23:25:02.578 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1237
17-03-17 23:25:02.578 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1237
17-03-17 23:25:02.578 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:25:02.578 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:25:02.578 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-17 23:25:02.768 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 1430
17-03-17 23:25:02.768 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:25:02.768 -07 000000610 INF: FPGA: 'CAMDBLSNAP 474 474 228 228 28663 150' command took 2 ms to send, 1434 ms to get response, and 1439 ms overall
17-03-17 23:25:02.768 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:25:02.768 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5390625, Z-Position -0.1304093650737. ------
17-03-17 23:25:02.778 -07 000000462 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13711 mm
17-03-17 23:25:02.778 -07 000000462 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:25:02.778 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:25:02.778 -07 000000482 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 23:25:02.778 -07 000000482 INF: Y Motor: Moving to 67.3826 mm, started at 66.5391 mm, delta = 0.8435 mm
17-03-17 23:25:02.778 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 29951, sync = True, waitForSettling = False)
17-03-17 23:25:02.778 -07 000000623 INF: Z Motor: Moving to -0.137107 mm, started at -0.130409 mm, distance = -6.70 um
17-03-17 23:25:02.778 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:25:02.788 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:25:02.788 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:25:02.788 -07 000000429 INF: FPGA: Recv YRDPOS 136272
17-03-17 23:25:02.798 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 23:25:02.798 -07 000000482 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:25:02.798 -07 000000482 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:25:02.798 -07 000000482 INF: Y Motor: Moving 1350 steps-28
17-03-17 23:25:02.798 -07 000000623 INF: FPGA: Xmit ZDACW 29951\n [Z Motor]
17-03-17 23:25:02.798 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 23:25:02.808 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:25:02.808 -07 000000623 INF: FPGA: 'ZDACW 29951' command took 1 ms to send, 0 ms to get response, and 25 ms overall
17-03-17 23:25:02.818 -07 000000482 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:25:02.828 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:25:02.828 -07 000000593 INF: FPGA: Recv ZDACR 29951
17-03-17 23:25:02.838 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:25:02.838 -07 000000623 INF: Z Motor: MoveAbsStepped took 55 ms (did NOT wait for settling yet))
17-03-17 23:25:02.968 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 23:25:02.968 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 23:25:02.978 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:25:02.978 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 23:25:02.978 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 23:25:02.978 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:25:02.978 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:25:02.978 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 23:25:02.978 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 23:25:02.988 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 23:25:03.008 -07 000000475 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:25:03.008 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 23:25:03.188 -07 000000382 INF: FPGA: Recv YMVTILE
17-03-17 23:25:03.188 -07 000000482 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 23:25:03.238 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:25:03.238 -07 000000478 INF: FPGA: Recv YRDPOS 137978
17-03-17 23:25:03.248 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:25:03.248 -07 000000482 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:25:03.248 -07 000000482 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-17 23:25:03.248 -07 000000482 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.125 mm/sec
17-03-17 23:25:03.498 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 75, FrontChillerTemperature: 3.997626,
17-03-17 23:25:04.198 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:25:04.198 -07 000000623 INF: FPGA: Recv YRDPOS 137978
17-03-17 23:25:04.208 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:04.208 -07 000000482 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:25:04.228 -07 000000482 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:25:04.228 -07 000000482 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:25:04.228 -07 000000482 INF: Y Motor: Moved to 67.3721 after 1452 ms (table move)
17-03-17 23:25:04.238 -07 000000462 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137107 mm (DAC = 29951)
17-03-17 23:25:04.238 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:04.238 -07 000000576 INF: FPGA: Recv ZSGSRD 30639
17-03-17 23:25:04.248 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:04.248 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:04.248 -07 000000482 INF: FPGA: Recv ZSGSRD 30628
17-03-17 23:25:04.258 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:04.258 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:04.258 -07 000000486 INF: FPGA: Recv ZSGSRD 30636
17-03-17 23:25:04.268 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:04.268 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:04.268 -07 000000486 INF: FPGA: Recv ZSGSRD 30624
17-03-17 23:25:04.278 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:04.278 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:04.278 -07 000000482 INF: FPGA: Recv ZSGSRD 30630
17-03-17 23:25:04.288 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:04.288 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:04.288 -07 000000486 INF: FPGA: Recv ZSGSRD 30635
17-03-17 23:25:04.298 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:04.298 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:04.298 -07 000000486 INF: FPGA: Recv ZSGSRD 30627
17-03-17 23:25:04.308 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:04.308 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:04.308 -07 000000475 INF: FPGA: Recv ZSGSRD 30635
17-03-17 23:25:04.318 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:04.318 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:04.318 -07 000000486 INF: FPGA: Recv ZSGSRD 30632
17-03-17 23:25:04.328 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:04.328 -07 000000462 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:04.328 -07 000000623 INF: FPGA: Recv ZSGSRD 30628
17-03-17 23:25:04.338 -07 000000462 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:04.338 -07 000000462 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:25:04.338 -07 000000475 INF: FPGA: Recv ZPIEZORD 26502
17-03-17 23:25:04.348 -07 000000462 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:04.348 -07 000000462 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.570 V. Piezo Error = -9.1 V.
17-03-17 23:25:04.348 -07 000000462 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.1 um, Read 10 ADC samples: Avg = 30631 (-136.3 uncal um), Error = 0.8 uncal um, Median = 30631 (-136.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30624 (-136.3 uncal um), Max = 30639 (-136.4 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 23:25:04.348 -07 000000462 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30631, posNoise = 8, negNoise = 7
17-03-17 23:25:04.348 -07 000000462 INF: Z Motor: After move to -0.137107, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:25:04.348 -07 000000462 INF: Z Motor: Settle wait time = 1455 ms, measure time = 111 ms (allowed 150 ms), total time = 1566 ms
17-03-17 23:25:04.348 -07 000000462 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 23:25:04.388 -07 000000462 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1608 ms
17-03-17 23:25:04.388 -07 000000462 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:25:04.388 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:25:04.388 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:25:04.388 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:25:04.388 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:25:04.388 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:25:04.388 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:25:04.388 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:25:04.388 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:25:04.398 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:25:04.398 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:25:04.408 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 23:25:04.408 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms.
17-03-17 23:25:04.408 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:25:04.458 -07 000000482 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:25:04.658 -07 000000475 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:25:04.658 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:25:04.658 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:25:04.658 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) start.
17-03-17 23:25:04.698 -07 000000475 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:25:04.698 -07 000000482 INF: FPGA: Recv CAMSNAP
17-03-17 23:25:04.698 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 285 ms overall
17-03-17 23:25:04.778 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) end. Duration was 119 ms.
17-03-17 23:25:04.778 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:25:04.778 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 23:25:04.778 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms.
17-03-17 23:25:04.798 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:25:04.798 -07 000000462 INF: Autofocus start
17-03-17 23:25:04.798 -07 000000462 INF: MeasureProfile start
17-03-17 23:25:04.808 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:25:04.808 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 5 ms to get response, and 5 ms overall
17-03-17 23:25:04.808 -07 000000475 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:25:04.818 -07 000000462 INF: MeasureProfile done
17-03-17 23:25:04.818 -07 000000462 INF: X=0  Z correction [um]=-0.02394831
17-03-17 23:25:04.818 -07 000000462 INF: Autofocus finished
17-03-17 23:25:05.008 -07 000000482 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:25:05.008 -07 000000475 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 198 ms to get response, and 202 ms overall
17-03-17 23:25:05.018 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.137103394125415. ----------
17-03-17 23:25:05.018 -07 000000610 INF: Cycle	75	Tile	10	Exposure Settings		A	474	G	228	T	228	C	474
17-03-17 23:25:05.018 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28459, sync = True, waitForSettling = True)
17-03-17 23:25:05.018 -07 000000610 INF: Z Motor: Moving to -0.130277 mm, started at -0.137103 mm, distance = 6.83 um
17-03-17 23:25:05.018 -07 000000610 INF: FPGA: Xmit ZDACW 28459\n [Z Motor]
17-03-17 23:25:05.028 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 23:25:05.028 -07 000000610 INF: FPGA: 'ZDACW 28459' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 23:25:05.028 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:25:05.028 -07 000000475 INF: FPGA: Recv ZDACR 28459
17-03-17 23:25:05.038 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:25:05.038 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:25:05.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:05.188 -07 000000623 INF: FPGA: Recv ZSGSRD 29569
17-03-17 23:25:05.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:25:05.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:05.198 -07 000000462 INF: FPGA: Recv ZSGSRD 29576
17-03-17 23:25:05.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:05.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:05.208 -07 000000623 INF: FPGA: Recv ZSGSRD 29564
17-03-17 23:25:05.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:05.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:05.218 -07 000000429 INF: FPGA: Recv ZSGSRD 29567
17-03-17 23:25:05.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:05.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:05.228 -07 000000482 INF: FPGA: Recv ZSGSRD 29576
17-03-17 23:25:05.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:05.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:05.238 -07 000000623 INF: FPGA: Recv ZSGSRD 29566
17-03-17 23:25:05.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:05.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:05.248 -07 000000462 INF: FPGA: Recv ZSGSRD 29568
17-03-17 23:25:05.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:05.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:05.258 -07 000000623 INF: FPGA: Recv ZSGSRD 29566
17-03-17 23:25:05.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:05.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:05.268 -07 000000429 INF: FPGA: Recv ZSGSRD 29567
17-03-17 23:25:05.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:05.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:05.278 -07 000000462 INF: FPGA: Recv ZSGSRD 29578
17-03-17 23:25:05.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:05.288 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:25:05.288 -07 000000429 INF: FPGA: Recv ZPIEZORD 25099
17-03-17 23:25:05.298 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:05.298 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.343 V. Piezo Error = -9.8 V.
17-03-17 23:25:05.298 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.3 um, Read 10 ADC samples: Avg = 29570 (-129.5 uncal um), Error = 0.8 uncal um, Median = 29568 (-129.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29564 (-129.5 uncal um), Max = 29578 (-129.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:25:05.298 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29570, posNoise = 8, negNoise = 6
17-03-17 23:25:05.298 -07 000000610 INF: Z Motor: After move to -0.130277, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:25:05.298 -07 000000610 INF: Z Motor: MoveAbsStepped took 272 ms)
17-03-17 23:25:05.298 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:25:05.298 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:25:05.298 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:25:05.298 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:25:05.298 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:25:05.298 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:25:05.298 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:25:05.298 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:25:05.298 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 23:25:05.298 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:25:05.298 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 23:25:05.298 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:25:05.308 -07 000000429 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:25:05.308 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:25:05.308 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:25:05.308 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:25:05.318 -07 000000429 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 23:25:05.318 -07 000000429 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 23:25:05.318 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 23:25:05.318 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 23:25:05.318 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 474 474 228 228 28636 150\n [Camera]
17-03-17 23:25:05.518 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:25:05.988 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 666
17-03-17 23:25:05.988 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 666
17-03-17 23:25:05.988 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:25:05.988 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:25:05.988 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start.
17-03-17 23:25:05.988 -07 000000462 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 666
17-03-17 23:25:05.998 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 666
17-03-17 23:25:05.998 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:25:05.998 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:25:05.998 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-17 23:25:06.178 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28636 859
17-03-17 23:25:06.328 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1009
17-03-17 23:25:06.368 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 23:25:06.368 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 23:25:06.368 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:25:06.378 -07 000000429 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 23:25:06.378 -07 000000429 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 23:25:06.378 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:25:06.378 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:25:06.378 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 23:25:06.378 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:25:06.388 -07 000000429 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 23:25:06.558 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1237
17-03-17 23:25:06.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1237
17-03-17 23:25:06.558 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:25:06.558 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:25:06.558 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start.
17-03-17 23:25:06.568 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1237
17-03-17 23:25:06.568 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1237
17-03-17 23:25:06.568 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:25:06.698 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:25:06.698 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 23:25:06.748 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP 1430
17-03-17 23:25:06.758 -07 000000462 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:25:06.758 -07 000000610 INF: FPGA: 'CAMDBLSNAP 474 474 228 228 28636 150' command took 2 ms to send, 1429 ms to get response, and 1436 ms overall
17-03-17 23:25:06.758 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:25:06.758 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.3720703125, Z-Position -0.130287305043007. ------
17-03-17 23:25:06.758 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:25:06.758 -07 000000433 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13676 mm
17-03-17 23:25:06.758 -07 000000433 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:25:06.758 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 23:25:06.758 -07 000000623 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm
17-03-17 23:25:06.758 -07 000000462 INF: Z Motor: Entering MoveAbsStepped (DAC = 29875, sync = True, waitForSettling = False)
17-03-17 23:25:06.758 -07 000000462 INF: Z Motor: Moving to -0.136759 mm, started at -0.130287 mm, distance = -6.47 um
17-03-17 23:25:06.758 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:25:06.768 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:25:06.768 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:25:06.768 -07 000000482 INF: FPGA: Recv YRDPOS 137978
17-03-17 23:25:06.778 -07 000000462 INF: FPGA: Xmit ZDACW 29875\n [Z Motor]
17-03-17 23:25:06.778 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 23:25:06.778 -07 000000623 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:25:06.778 -07 000000623 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:25:06.778 -07 000000623 INF: Y Motor: Moving 1345 steps-22
17-03-17 23:25:06.778 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 23:25:06.788 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:25:06.788 -07 000000462 INF: FPGA: 'ZDACW 29875' command took 0 ms to send, 0 ms to get response, and 21 ms overall
17-03-17 23:25:06.798 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:25:06.808 -07 000000462 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:25:06.808 -07 000000475 INF: FPGA: Recv ZDACR 29875
17-03-17 23:25:06.818 -07 000000462 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:25:06.818 -07 000000462 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet))
17-03-17 23:25:06.958 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 23:25:06.958 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 23:25:06.958 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:25:06.968 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 23:25:06.968 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 23:25:06.988 -07 000000462 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:25:06.988 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 23:25:07.068 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:25:07.068 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 74. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1192, R2=1246, Total=2438. Warn if over 250 bubbles per interval.
17-03-17 23:25:07.078 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 23:25:07.078 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 23:25:07.078 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:25:07.078 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:25:07.088 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 522 ms.
17-03-17 23:25:07.168 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-17 23:25:07.168 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 23:25:07.218 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:25:07.218 -07 000000551 INF: FPGA: Recv YRDPOS 139684
17-03-17 23:25:07.228 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:07.228 -07 000000623 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:25:07.228 -07 000000623 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 23:25:07.228 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.841 mm, average velocity = 2.117 mm/sec
17-03-17 23:25:08.178 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:25:08.178 -07 000000480 INF: FPGA: Recv YRDPOS 139684
17-03-17 23:25:08.188 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:25:08.188 -07 000000623 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:25:08.208 -07 000000623 INF: Y Motor: After move to 68.212608, error = -0.007530, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:25:08.208 -07 000000623 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:25:08.208 -07 000000623 INF: Y Motor: Moved to 68.2051 after 1447 ms (table move)
17-03-17 23:25:08.208 -07 000000433 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136759 mm (DAC = 29875)
17-03-17 23:25:08.208 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:08.218 -07 000000429 INF: FPGA: Recv ZSGSRD 30591
17-03-17 23:25:08.218 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 23:25:08.218 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:08.218 -07 000000593 INF: FPGA: Recv ZSGSRD 30575
17-03-17 23:25:08.228 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:25:08.228 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:08.228 -07 000000623 INF: FPGA: Recv ZSGSRD 30581
17-03-17 23:25:08.238 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:08.238 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:08.238 -07 000000623 INF: FPGA: Recv ZSGSRD 30584
17-03-17 23:25:08.248 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:08.248 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:08.248 -07 000000482 INF: FPGA: Recv ZSGSRD 30575
17-03-17 23:25:08.258 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:08.258 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:08.258 -07 000000475 INF: FPGA: Recv ZSGSRD 30583
17-03-17 23:25:08.268 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:08.268 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:08.268 -07 000000482 INF: FPGA: Recv ZSGSRD 30579
17-03-17 23:25:08.278 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:25:08.278 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:08.278 -07 000000475 INF: FPGA: Recv ZSGSRD 30573
17-03-17 23:25:08.288 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:08.288 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:08.288 -07 000000475 INF: FPGA: Recv ZSGSRD 30577
17-03-17 23:25:08.298 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:08.298 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:08.298 -07 000000482 INF: FPGA: Recv ZSGSRD 30574
17-03-17 23:25:08.308 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:08.308 -07 000000433 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:25:08.308 -07 000000475 INF: FPGA: Recv ZPIEZORD 26418
17-03-17 23:25:08.318 -07 000000433 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:08.318 -07 000000433 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.559 V. Piezo Error = -9.2 V.
17-03-17 23:25:08.318 -07 000000433 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.8 um, Read 10 ADC samples: Avg = 30579 (-136.0 uncal um), Error = 0.8 uncal um, Median = 30578 (-136.0 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30573 (-135.9 uncal um), Max = 30591 (-136.1 uncal um), Pos Noise = 12 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:25:08.318 -07 000000433 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30579, posNoise = 12, negNoise = 6
17-03-17 23:25:08.318 -07 000000433 INF: Z Motor: After move to -0.136759, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:25:08.318 -07 000000433 INF: Z Motor: Settle wait time = 1450 ms, measure time = 102 ms (allowed 150 ms), total time = 1552 ms
17-03-17 23:25:08.318 -07 000000433 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 23:25:08.368 -07 000000433 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1604 ms
17-03-17 23:25:08.368 -07 000000433 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:25:08.368 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:25:08.368 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:25:08.368 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:25:08.368 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:25:08.368 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:25:08.368 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:25:08.368 -07 000000429 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:25:08.368 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:25:08.378 -07 000000429 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms.
17-03-17 23:25:08.378 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:25:08.388 -07 000000429 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 23:25:08.388 -07 000000429 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms.
17-03-17 23:25:08.388 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:25:08.438 -07 000000433 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:25:08.638 -07 000000475 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:25:08.638 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:25:08.638 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:25:08.638 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) start.
17-03-17 23:25:08.678 -07 000000429 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:25:08.678 -07 000000433 INF: FPGA: Recv CAMSNAP
17-03-17 23:25:08.678 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 284 ms overall
17-03-17 23:25:08.758 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 610341080, 0x0, 559484976) end. Duration was 124 ms.
17-03-17 23:25:08.758 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:25:08.768 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 23:25:08.768 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms.
17-03-17 23:25:08.778 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:25:08.778 -07 000000429 INF: Autofocus start
17-03-17 23:25:08.778 -07 000000429 INF: MeasureProfile start
17-03-17 23:25:08.778 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:25:08.788 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:25:08.788 -07 000000475 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:25:08.788 -07 000000429 INF: MeasureProfile done
17-03-17 23:25:08.788 -07 000000429 INF: X=0  Z correction [um]=-0.02394831
17-03-17 23:25:08.788 -07 000000429 INF: Autofocus finished
17-03-17 23:25:08.868 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 75, FrontChillerTemperature: 3.996267,
17-03-17 23:25:08.988 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:25:08.988 -07 000000475 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:25:08.988 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.205078125, Z-position -0.136769335094043. ----------
17-03-17 23:25:08.988 -07 000000610 INF: Cycle	75	Tile	11	Exposure Settings		A	474	G	228	T	228	C	474
17-03-17 23:25:08.998 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28382, sync = True, waitForSettling = True)
17-03-17 23:25:08.998 -07 000000610 INF: Z Motor: Moving to -0.129924 mm, started at -0.136769 mm, distance = 6.84 um
17-03-17 23:25:08.998 -07 000000610 INF: FPGA: Xmit ZDACW 28382\n [Z Motor]
17-03-17 23:25:08.998 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 23:25:09.008 -07 000000610 INF: FPGA: 'ZDACW 28382' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:25:09.008 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:25:09.008 -07 000000382 INF: FPGA: Recv ZDACR 28382
17-03-17 23:25:09.018 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:09.018 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:25:09.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:09.168 -07 000000501 INF: FPGA: Recv ZSGSRD 29511
17-03-17 23:25:09.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:25:09.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:09.178 -07 000000433 INF: FPGA: Recv ZSGSRD 29515
17-03-17 23:25:09.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:09.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:09.198 -07 000000475 INF: FPGA: Recv ZSGSRD 29509
17-03-17 23:25:09.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:25:09.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:09.208 -07 000000433 INF: FPGA: Recv ZSGSRD 29518
17-03-17 23:25:09.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:09.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:09.228 -07 000000429 INF: FPGA: Recv ZSGSRD 29503
17-03-17 23:25:09.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:25:09.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:09.238 -07 000000475 INF: FPGA: Recv ZSGSRD 29519
17-03-17 23:25:09.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:09.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:09.268 -07 000000382 INF: FPGA: Recv ZSGSRD 29513
17-03-17 23:25:09.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:25:09.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:09.288 -07 000000501 INF: FPGA: Recv ZSGSRD 29512
17-03-17 23:25:09.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:25:09.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:09.298 -07 000000382 INF: FPGA: Recv ZSGSRD 29513
17-03-17 23:25:09.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:09.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:09.308 -07 000000576 INF: FPGA: Recv ZSGSRD 29506
17-03-17 23:25:09.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:09.318 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:25:09.318 -07 000000382 INF: FPGA: Recv ZPIEZORD 25087
17-03-17 23:25:09.328 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:09.328 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.331 V. Piezo Error = -9.7 V.
17-03-17 23:25:09.328 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.9 um, Read 10 ADC samples: Avg = 29512 (-129.1 uncal um), Error = 0.8 uncal um, Median = 29512 (-129.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29503 (-129.1 uncal um), Max = 29519 (-129.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 23:25:09.328 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29512, posNoise = 7, negNoise = 9
17-03-17 23:25:09.328 -07 000000610 INF: Z Motor: After move to -0.129924, error = 0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:25:09.328 -07 000000610 INF: Z Motor: MoveAbsStepped took 330 ms)
17-03-17 23:25:09.328 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:25:09.328 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:25:09.328 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:25:09.328 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:25:09.328 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:25:09.328 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:25:09.328 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:25:09.328 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:25:09.328 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 3 ms.
17-03-17 23:25:09.328 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:25:09.338 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:25:09.338 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:25:09.338 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:25:09.338 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:25:09.338 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 23:25:09.338 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:25:09.348 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 23:25:09.348 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:25:09.348 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 23:25:09.348 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 23:25:09.348 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 474 474 228 228 28559 150\n [Camera]
17-03-17 23:25:09.548 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:25:10.028 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 666
17-03-17 23:25:10.028 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 666
17-03-17 23:25:10.028 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:25:10.028 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 666
17-03-17 23:25:10.028 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 666
17-03-17 23:25:10.028 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:25:10.028 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:25:10.028 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 23:25:10.038 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:25:10.038 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start.
17-03-17 23:25:10.218 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28559 859
17-03-17 23:25:10.368 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1009
17-03-17 23:25:10.408 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 23:25:10.408 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 374 ms.
17-03-17 23:25:10.408 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:25:10.408 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 23:25:10.408 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 23:25:10.408 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:25:10.408 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:25:10.408 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 23:25:10.408 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:25:10.418 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 23:25:10.598 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1237
17-03-17 23:25:10.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1237
17-03-17 23:25:10.598 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:25:10.598 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1237
17-03-17 23:25:10.598 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1237
17-03-17 23:25:10.598 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:25:10.718 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:25:10.718 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start.
17-03-17 23:25:10.728 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:25:10.728 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) start.
17-03-17 23:25:11.128 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 23:25:11.128 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 23:25:11.128 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:25:11.128 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 574918816, 0x0, 418435064) end. Duration was 401 ms.
17-03-17 23:25:11.128 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 23:25:11.128 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:25:11.128 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:25:11.128 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 534 ms.
17-03-17 23:25:11.128 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:25:11.138 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 538 ms.
17-03-17 23:25:11.138 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1430
17-03-17 23:25:11.138 -07 000000501 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:25:11.138 -07 000000610 INF: FPGA: 'CAMDBLSNAP 474 474 228 228 28559 150' command took 2 ms to send, 1786 ms to get response, and 1789 ms overall
17-03-17 23:25:11.138 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:25:11.138 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.205078125, Z-Position -0.129914700738784. ------
17-03-17 23:25:11.148 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:25:11.148 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13656 mm
17-03-17 23:25:11.148 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:25:11.728 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:25:11.728 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 570 ms to get response, and 578 ms overall
17-03-17 23:25:11.728 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:25:11.728 -07 000000486 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 23:25:11.728 -07 000000486 INF: Y Motor: Moving to 69.0426 mm, started at 68.2051 mm, delta = 0.8375 mm
17-03-17 23:25:11.738 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:25:12.728 -07 000000478 INF: Z Motor: Entering MoveAbsStepped (DAC = 29832, sync = True, waitForSettling = False)
17-03-17 23:25:12.728 -07 000000478 INF: Z Motor: Moving to -0.136562 mm, started at -0.129915 mm, distance = -6.65 um
17-03-17 23:25:12.728 -07 000000478 INF: FPGA: Xmit ZDACW 29832\n [Z Motor]
17-03-17 23:25:13.728 -07 000000593 INF: FPGA: Recv YRDPOS 139684
17-03-17 23:25:13.728 -07 000000593 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:25:13.728 -07 000000593 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:25:13.728 -07 000000593 INF: FPGA: Recv ZDACW
17-03-17 23:25:13.728 -07 000000478 INF: FPGA: 'ZDACW 29832' command took 0 ms to send, 991 ms to get response, and 999 ms overall
17-03-17 23:25:13.728 -07 000000478 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:25:13.728 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 74. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1192, R2=1246, Total=2438. Warn if over 250 bubbles per interval.
17-03-17 23:25:13.728 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1980 ms to get response, and 1996 ms overall
17-03-17 23:25:13.728 -07 000000486 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:25:13.728 -07 000000486 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:25:13.728 -07 000000486 INF: Y Motor: Moving 1340 steps-15
17-03-17 23:25:13.728 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 1990 ms to get response, and 1999 ms overall
17-03-17 23:25:13.728 -07 000000593 INF: FPGA: Recv ZDACR 29832
17-03-17 23:25:13.738 -07 000000478 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:25:13.738 -07 000000478 INF: Z Motor: MoveAbsStepped took 1008 ms (did NOT wait for settling yet))
17-03-17 23:25:13.738 -07 000000486 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:25:14.108 -07 000000501 INF: FPGA: Recv YMVTILE
17-03-17 23:25:14.108 -07 000000486 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-17 23:25:14.158 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:25:14.158 -07 000000501 INF: FPGA: Recv YRDPOS 141368
17-03-17 23:25:14.168 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:25:14.168 -07 000000486 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:25:14.168 -07 000000486 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 23:25:14.168 -07 000000486 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.838 mm, average velocity = 2.170 mm/sec
17-03-17 23:25:14.238 -07 000000501 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 75, FrontChillerTemperature: 3.99219,
17-03-17 23:25:15.118 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:25:15.118 -07 000000501 INF: FPGA: Recv YRDPOS 141368
17-03-17 23:25:15.128 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:25:15.128 -07 000000486 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:25:15.148 -07 000000486 INF: Y Motor: After move to 69.042610, error = -0.015266, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:25:15.148 -07 000000486 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:25:15.148 -07 000000486 INF: Y Motor: Moved to 69.0273 after 3422 ms (table move)
17-03-17 23:25:15.148 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136562 mm (DAC = 29832)
17-03-17 23:25:15.148 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:15.158 -07 000000482 INF: FPGA: Recv ZSGSRD 30549
17-03-17 23:25:15.168 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:25:15.168 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:15.168 -07 000000462 INF: FPGA: Recv ZSGSRD 30549
17-03-17 23:25:15.178 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:15.178 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:15.178 -07 000000501 INF: FPGA: Recv ZSGSRD 30553
17-03-17 23:25:15.188 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:15.188 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:15.188 -07 000000478 INF: FPGA: Recv ZSGSRD 30547
17-03-17 23:25:15.198 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:15.198 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:15.198 -07 000000486 INF: FPGA: Recv ZSGSRD 30549
17-03-17 23:25:15.208 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:15.208 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:15.208 -07 000000623 INF: FPGA: Recv ZSGSRD 30547
17-03-17 23:25:15.218 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:15.218 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:15.218 -07 000000482 INF: FPGA: Recv ZSGSRD 30546
17-03-17 23:25:15.228 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:15.228 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:15.228 -07 000000501 INF: FPGA: Recv ZSGSRD 30551
17-03-17 23:25:15.238 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:15.238 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:15.238 -07 000000482 INF: FPGA: Recv ZSGSRD 30545
17-03-17 23:25:15.248 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:15.248 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:15.248 -07 000000462 INF: FPGA: Recv ZSGSRD 30541
17-03-17 23:25:15.258 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:15.258 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:25:15.258 -07 000000482 INF: FPGA: Recv ZPIEZORD 26428
17-03-17 23:25:15.268 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:15.268 -07 000000480 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.552 V. Piezo Error = -9.1 V.
17-03-17 23:25:15.268 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.6 um, Read 10 ADC samples: Avg = 30548 (-135.8 uncal um), Error = 0.8 uncal um, Median = 30548 (-135.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30541 (-135.7 uncal um), Max = 30553 (-135.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 23:25:15.268 -07 000000480 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30548, posNoise = 5, negNoise = 7
17-03-17 23:25:15.268 -07 000000480 INF: Z Motor: After move to -0.136562, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:25:15.268 -07 000000480 INF: Z Motor: Settle wait time = 2428 ms, measure time = 111 ms (allowed 150 ms), total time = 2539 ms
17-03-17 23:25:15.268 -07 000000480 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 23:25:15.308 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4154 ms
17-03-17 23:25:15.308 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:25:15.308 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:25:15.308 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:25:15.308 -07 000000462 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:25:15.308 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:25:15.308 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:25:15.308 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:25:15.308 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:25:15.308 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:25:15.318 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:25:15.318 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:25:15.338 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 21 ms.
17-03-17 23:25:15.338 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 25 ms.
17-03-17 23:25:15.338 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:25:15.388 -07 000000462 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:25:15.578 -07 000000475 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:25:15.588 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:25:15.588 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:25:15.588 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1094749800, 0x0, 559484976) start.
17-03-17 23:25:15.618 -07 000000478 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:25:15.628 -07 000000501 INF: FPGA: Recv CAMSNAP
17-03-17 23:25:15.628 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 23:25:15.708 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1094749800, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 23:25:15.708 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:25:15.718 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 23:25:15.718 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms.
17-03-17 23:25:15.728 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:25:15.728 -07 000000462 INF: Autofocus start
17-03-17 23:25:15.728 -07 000000462 INF: MeasureProfile start
17-03-17 23:25:15.728 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:25:15.738 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:25:15.738 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:25:15.738 -07 000000462 INF: MeasureProfile done
17-03-17 23:25:15.738 -07 000000462 INF: X=16  Z correction [um]=0.0530179
17-03-17 23:25:15.738 -07 000000462 INF: Autofocus finished
17-03-17 23:25:15.938 -07 000000486 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:25:15.938 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:25:15.938 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02734375, Z-position -0.136570184517649. ----------
17-03-17 23:25:15.938 -07 000000610 INF: Cycle	75	Tile	12	Exposure Settings		A	474	G	228	T	228	C	474
17-03-17 23:25:15.948 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28356, sync = True, waitForSettling = True)
17-03-17 23:25:15.948 -07 000000610 INF: Z Motor: Moving to -0.129805 mm, started at -0.136570 mm, distance = 6.76 um
17-03-17 23:25:15.948 -07 000000610 INF: FPGA: Xmit ZDACW 28356\n [Z Motor]
17-03-17 23:25:15.948 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 23:25:15.958 -07 000000610 INF: FPGA: 'ZDACW 28356' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:25:15.958 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:25:15.958 -07 000000482 INF: FPGA: Recv ZDACR 28356
17-03-17 23:25:15.968 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:15.968 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:25:16.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:16.118 -07 000000501 INF: FPGA: Recv ZSGSRD 29498
17-03-17 23:25:16.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:25:16.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:16.128 -07 000000478 INF: FPGA: Recv ZSGSRD 29497
17-03-17 23:25:16.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:16.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:16.138 -07 000000623 INF: FPGA: Recv ZSGSRD 29498
17-03-17 23:25:16.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:16.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:16.148 -07 000000475 INF: FPGA: Recv ZSGSRD 29500
17-03-17 23:25:16.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:16.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:16.158 -07 000000462 INF: FPGA: Recv ZSGSRD 29500
17-03-17 23:25:16.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:16.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:16.168 -07 000000486 INF: FPGA: Recv ZSGSRD 29491
17-03-17 23:25:16.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:16.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:16.178 -07 000000480 INF: FPGA: Recv ZSGSRD 29495
17-03-17 23:25:16.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:16.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:16.188 -07 000000475 INF: FPGA: Recv ZSGSRD 29494
17-03-17 23:25:16.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:16.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:16.198 -07 000000623 INF: FPGA: Recv ZSGSRD 29497
17-03-17 23:25:16.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:16.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:16.208 -07 000000475 INF: FPGA: Recv ZSGSRD 29496
17-03-17 23:25:16.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:16.218 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:25:16.218 -07 000000480 INF: FPGA: Recv ZPIEZORD 25023
17-03-17 23:25:16.228 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:16.228 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.3 V, since DAC is at 4.327 V. Piezo Error = -9.8 V.
17-03-17 23:25:16.228 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.8 um, Read 10 ADC samples: Avg = 29497 (-129.0 uncal um), Error = 0.8 uncal um, Median = 29497 (-129.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29491 (-129.0 uncal um), Max = 29500 (-129.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:25:16.228 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29497, posNoise = 3, negNoise = 6
17-03-17 23:25:16.228 -07 000000610 INF: Z Motor: After move to -0.129805, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:25:16.228 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 23:25:16.228 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:25:16.228 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:25:16.228 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:25:16.228 -07 000000478 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:25:16.228 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:25:16.228 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:25:16.228 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:25:16.228 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:25:16.228 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:25:16.228 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:25:16.228 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:25:16.228 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:25:16.238 -07 000000462 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 23:25:16.238 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:25:16.238 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:25:16.238 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:25:16.248 -07 000000462 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 23:25:16.248 -07 000000462 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 23:25:16.248 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 23:25:16.248 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 23:25:16.248 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 474 474 228 228 28533 150\n [Camera]
17-03-17 23:25:16.448 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:25:16.928 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 666
17-03-17 23:25:16.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 666
17-03-17 23:25:16.928 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:25:16.928 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 666
17-03-17 23:25:16.928 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 666
17-03-17 23:25:16.928 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:25:16.928 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:25:16.928 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 23:25:16.938 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:25:16.938 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 23:25:17.068 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:25:17.068 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 74. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1192, R2=1246, Total=2438. Warn if over 250 bubbles per interval.
17-03-17 23:25:17.118 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28533 859
17-03-17 23:25:17.268 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1009
17-03-17 23:25:17.308 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 370 ms.
17-03-17 23:25:17.308 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 370 ms.
17-03-17 23:25:17.308 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:25:17.308 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 23:25:17.308 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 23:25:17.308 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:25:17.308 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:25:17.318 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:25:17.318 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 23:25:17.318 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 23:25:17.498 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1237
17-03-17 23:25:17.498 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1237
17-03-17 23:25:17.498 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:25:17.498 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1237
17-03-17 23:25:17.498 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1237
17-03-17 23:25:17.498 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:25:17.498 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:25:17.498 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 23:25:17.508 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:25:17.508 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 23:25:17.688 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP 1429
17-03-17 23:25:17.688 -07 000000486 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:25:17.688 -07 000000610 INF: FPGA: 'CAMDBLSNAP 474 474 228 228 28533 150' command took 2 ms to send, 1425 ms to get response, and 1436 ms overall
17-03-17 23:25:17.688 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:25:17.688 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02734375, Z-Position -0.129818337556658. ------
17-03-17 23:25:17.698 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13621 mm
17-03-17 23:25:17.698 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:25:17.698 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:25:17.878 -07 000000478 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 23:25:17.878 -07 000000478 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 23:25:17.878 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:25:17.878 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 23:25:17.878 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 23:25:17.878 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:25:17.888 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:25:17.888 -07 000000478 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 23:25:17.888 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 23:25:17.898 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 23:25:17.898 -07 000000478 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:25:17.898 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 194 ms to get response, and 201 ms overall
17-03-17 23:25:17.898 -07 000000486 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:25:17.898 -07 000000478 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 23:25:17.898 -07 000000478 INF: Y Motor: Moving to 69.8726 mm, started at 69.0273 mm, delta = 0.8453 mm
17-03-17 23:25:17.908 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:25:17.908 -07 000000482 INF: Z Motor: Entering MoveAbsStepped (DAC = 29756, sync = True, waitForSettling = False)
17-03-17 23:25:17.908 -07 000000482 INF: Z Motor: Moving to -0.136214 mm, started at -0.129818 mm, distance = -6.40 um
17-03-17 23:25:17.918 -07 000000482 INF: FPGA: Xmit ZDACW 29756\n [Z Motor]
17-03-17 23:25:18.728 -07 000000429 INF: FPGA: Recv YRDPOS 141368
17-03-17 23:25:18.728 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 23:25:18.728 -07 000000429 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:25:18.728 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 810 ms to get response, and 824 ms overall
17-03-17 23:25:18.728 -07 000000478 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:25:18.728 -07 000000478 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:25:18.728 -07 000000478 INF: Y Motor: Moving 1352 steps-31
17-03-17 23:25:18.728 -07 000000478 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:25:18.728 -07 000000482 INF: FPGA: 'ZDACW 29756' command took 0 ms to send, 800 ms to get response, and 817 ms overall
17-03-17 23:25:18.728 -07 000000486 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 820 ms to get response, and 825 ms overall
17-03-17 23:25:18.738 -07 000000482 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:25:18.738 -07 000000486 INF: FPGA: Recv ZDACR 29756
17-03-17 23:25:18.748 -07 000000482 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 23:25:18.748 -07 000000482 INF: Z Motor: MoveAbsStepped took 837 ms (did NOT wait for settling yet))
17-03-17 23:25:19.098 -07 000000482 INF: FPGA: Recv YMVTILE
17-03-17 23:25:19.098 -07 000000478 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 378 ms overall
17-03-17 23:25:19.148 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:25:19.148 -07 000000482 INF: FPGA: Recv YRDPOS 143080
17-03-17 23:25:19.158 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:19.158 -07 000000478 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:25:19.158 -07 000000478 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 23:25:19.158 -07 000000478 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.845 mm, average velocity = 2.236 mm/sec
17-03-17 23:25:19.598 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 75, FrontChillerTemperature: 4.014009,
17-03-17 23:25:20.108 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:25:20.108 -07 000000433 INF: FPGA: Recv YRDPOS 143080
17-03-17 23:25:20.118 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:25:20.118 -07 000000478 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:25:20.138 -07 000000478 INF: Y Motor: After move to 69.872612, error = -0.009331, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:25:20.138 -07 000000478 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:25:20.138 -07 000000478 INF: Y Motor: Moved to 69.8633 after 2240 ms (table move)
17-03-17 23:25:20.138 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136214 mm (DAC = 29756)
17-03-17 23:25:20.138 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:20.148 -07 000000486 INF: FPGA: Recv ZSGSRD 30503
17-03-17 23:25:20.158 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:25:20.158 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:20.158 -07 000000576 INF: FPGA: Recv ZSGSRD 30498
17-03-17 23:25:20.168 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:20.168 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:20.168 -07 000000486 INF: FPGA: Recv ZSGSRD 30492
17-03-17 23:25:20.178 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:20.178 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:20.178 -07 000000478 INF: FPGA: Recv ZSGSRD 30489
17-03-17 23:25:20.188 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:20.188 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:20.188 -07 000000433 INF: FPGA: Recv ZSGSRD 30495
17-03-17 23:25:20.198 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:20.198 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:20.198 -07 000000576 INF: FPGA: Recv ZSGSRD 30488
17-03-17 23:25:20.208 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:20.208 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:20.208 -07 000000433 INF: FPGA: Recv ZSGSRD 30491
17-03-17 23:25:20.218 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:20.218 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:20.218 -07 000000576 INF: FPGA: Recv ZSGSRD 30488
17-03-17 23:25:20.228 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:20.228 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:20.228 -07 000000551 INF: FPGA: Recv ZSGSRD 30497
17-03-17 23:25:20.238 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:20.238 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:20.238 -07 000000576 INF: FPGA: Recv ZSGSRD 30500
17-03-17 23:25:20.248 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:20.248 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:25:20.248 -07 000000486 INF: FPGA: Recv ZPIEZORD 26313
17-03-17 23:25:20.258 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:20.258 -07 000000480 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.4 V, since DAC is at 4.540 V. Piezo Error = -9.2 V.
17-03-17 23:25:20.258 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.2 um, Read 10 ADC samples: Avg = 30494 (-135.4 uncal um), Error = 0.8 uncal um, Median = 30494 (-135.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30488 (-135.4 uncal um), Max = 30503 (-135.5 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:25:20.258 -07 000000480 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30494, posNoise = 9, negNoise = 6
17-03-17 23:25:20.258 -07 000000480 INF: Z Motor: After move to -0.136214, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:25:20.258 -07 000000480 INF: Z Motor: Settle wait time = 2236 ms, measure time = 113 ms (allowed 150 ms), total time = 2349 ms
17-03-17 23:25:20.258 -07 000000480 INF: Z Motor: Waiting extra 37 ms after reading position to reach expected total of 150 ms
17-03-17 23:25:20.298 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2598 ms
17-03-17 23:25:20.298 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:25:20.298 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:25:20.298 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:25:20.298 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:25:20.298 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:25:20.298 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:25:20.298 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:25:20.298 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:25:20.298 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:25:20.298 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:25:20.298 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:25:20.308 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 23:25:20.308 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 23:25:20.318 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:25:20.358 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:25:20.558 -07 000000551 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:25:20.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:25:20.558 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:25:20.668 -07 000000576 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:25:20.668 -07 000000576 INF: FPGA: Recv CAMSNAP
17-03-17 23:25:20.668 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1113831184, 0x0, 559484976) start.
17-03-17 23:25:20.668 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 348 ms to get response, and 354 ms overall
17-03-17 23:25:20.798 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1113831184, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 23:25:20.798 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:25:20.798 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:25:20.798 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 236 ms.
17-03-17 23:25:20.868 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:25:20.868 -07 000000551 INF: Autofocus start
17-03-17 23:25:20.868 -07 000000551 INF: MeasureProfile start
17-03-17 23:25:20.868 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:25:20.878 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:25:20.878 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:25:20.878 -07 000000551 INF: MeasureProfile done
17-03-17 23:25:20.878 -07 000000551 INF: X=0  Z correction [um]=-0.02394831
17-03-17 23:25:20.878 -07 000000551 INF: Autofocus finished
17-03-17 23:25:21.078 -07 000000482 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:25:21.078 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall
17-03-17 23:25:21.078 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86328125, Z-position -0.136223277061994. ----------
17-03-17 23:25:21.088 -07 000000610 INF: Cycle	75	Tile	13	Exposure Settings		A	474	G	228	T	228	C	474
17-03-17 23:25:21.088 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28263, sync = True, waitForSettling = True)
17-03-17 23:25:21.088 -07 000000610 INF: Z Motor: Moving to -0.129380 mm, started at -0.136223 mm, distance = 6.84 um
17-03-17 23:25:21.088 -07 000000610 INF: FPGA: Xmit ZDACW 28263\n [Z Motor]
17-03-17 23:25:21.088 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 23:25:21.098 -07 000000610 INF: FPGA: 'ZDACW 28263' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:25:21.098 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:25:21.098 -07 000000433 INF: FPGA: Recv ZDACR 28263
17-03-17 23:25:21.108 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:21.108 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:25:21.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:21.258 -07 000000433 INF: FPGA: Recv ZSGSRD 29430
17-03-17 23:25:21.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:25:21.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:21.268 -07 000000433 INF: FPGA: Recv ZSGSRD 29429
17-03-17 23:25:21.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:21.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:21.278 -07 000000576 INF: FPGA: Recv ZSGSRD 29431
17-03-17 23:25:21.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:21.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:21.288 -07 000000576 INF: FPGA: Recv ZSGSRD 29432
17-03-17 23:25:21.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:21.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:21.298 -07 000000576 INF: FPGA: Recv ZSGSRD 29426
17-03-17 23:25:21.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:21.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:21.308 -07 000000576 INF: FPGA: Recv ZSGSRD 29429
17-03-17 23:25:21.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:21.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:21.318 -07 000000576 INF: FPGA: Recv ZSGSRD 29432
17-03-17 23:25:21.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:21.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:21.328 -07 000000576 INF: FPGA: Recv ZSGSRD 29431
17-03-17 23:25:21.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:21.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:21.338 -07 000000482 INF: FPGA: Recv ZSGSRD 29429
17-03-17 23:25:21.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:21.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:21.348 -07 000000482 INF: FPGA: Recv ZSGSRD 29431
17-03-17 23:25:21.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:21.358 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:25:21.358 -07 000000576 INF: FPGA: Recv ZPIEZORD 24972
17-03-17 23:25:21.368 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:21.368 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.313 V. Piezo Error = -9.8 V.
17-03-17 23:25:21.368 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.4 um, Read 10 ADC samples: Avg = 29430 (-128.6 uncal um), Error = 0.8 uncal um, Median = 29430 (-128.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29426 (-128.6 uncal um), Max = 29432 (-128.6 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:25:21.368 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29430, posNoise = 2, negNoise = 4
17-03-17 23:25:21.368 -07 000000610 INF: Z Motor: After move to -0.129380, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:25:21.368 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 23:25:21.368 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:25:21.368 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:25:21.368 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:25:21.368 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:25:21.368 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:25:21.368 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:25:21.368 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:25:21.368 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:25:21.368 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:25:21.368 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:25:21.368 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:25:21.368 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:25:21.378 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:25:21.378 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:25:21.378 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:25:21.378 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:25:21.388 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 23:25:21.388 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:25:21.388 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 23:25:21.388 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:25:21.388 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 474 474 228 228 28440 150\n [Camera]
17-03-17 23:25:21.588 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:25:22.068 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:25:22.068 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 74. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1192, R2=1246, Total=2438. Warn if over 250 bubbles per interval.
17-03-17 23:25:22.068 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 666
17-03-17 23:25:22.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 666
17-03-17 23:25:22.068 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:25:22.078 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:25:22.078 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 583729424, 0x0, 391868352) start.
17-03-17 23:25:22.078 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 666
17-03-17 23:25:22.078 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 666
17-03-17 23:25:22.078 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:25:22.078 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:25:22.078 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 23:25:22.258 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28440 859
17-03-17 23:25:22.408 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1009
17-03-17 23:25:22.468 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 583729424, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 23:25:22.468 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 23:25:22.468 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:25:22.468 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:25:22.468 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 23:25:22.478 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 395 ms.
17-03-17 23:25:22.478 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 23:25:22.478 -07 000000382 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:25:22.478 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:25:22.488 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 23:25:22.638 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1237
17-03-17 23:25:22.638 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1237
17-03-17 23:25:22.638 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:25:22.638 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1237
17-03-17 23:25:22.638 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1237
17-03-17 23:25:22.638 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:25:22.748 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:25:22.748 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 23:25:22.748 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:25:22.748 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1124101960, 0x0, 391868352) start.
17-03-17 23:25:22.828 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP 1429
17-03-17 23:25:22.828 -07 000000382 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:25:22.828 -07 000000610 INF: FPGA: 'CAMDBLSNAP 474 474 228 228 28440 150' command took 2 ms to send, 1426 ms to get response, and 1436 ms overall
17-03-17 23:25:22.828 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:25:22.828 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86328125, Z-Position -0.12938791534316. ------
17-03-17 23:25:22.838 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:25:22.838 -07 000000478 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13572 mm
17-03-17 23:25:22.838 -07 000000478 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:25:22.838 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 23:25:22.838 -07 000000382 INF: Y Motor: Moving to 70.7026 mm, started at 69.8633 mm, delta = 0.8393 mm
17-03-17 23:25:22.848 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:25:23.158 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 403 ms.
17-03-17 23:25:23.158 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 23:25:23.158 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:25:23.158 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1124101960, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 23:25:23.158 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms.
17-03-17 23:25:23.158 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:25:23.158 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:25:23.158 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:25:23.158 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 520 ms.
17-03-17 23:25:23.168 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 523 ms.
17-03-17 23:25:23.168 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 29649, sync = True, waitForSettling = False)
17-03-17 23:25:23.168 -07 000000486 INF: Z Motor: Moving to -0.135724 mm, started at -0.129388 mm, distance = -6.34 um
17-03-17 23:25:23.168 -07 000000486 INF: FPGA: Xmit ZDACW 29649\n [Z Motor]
17-03-17 23:25:23.178 -07 000000482 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:25:23.178 -07 000000482 INF: FPGA: Recv YRDPOS 143081
17-03-17 23:25:23.178 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 331 ms to get response, and 338 ms overall
17-03-17 23:25:23.178 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 321 ms to get response, and 335 ms overall
17-03-17 23:25:23.178 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 23:25:23.178 -07 000000486 INF: FPGA: 'ZDACW 29649' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 23:25:23.178 -07 000000382 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:25:23.178 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:25:23.178 -07 000000382 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:25:23.178 -07 000000382 INF: Y Motor: Moving 1342 steps-19
17-03-17 23:25:23.188 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:25:23.198 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:25:23.198 -07 000000482 INF: FPGA: Recv ZDACR 29649
17-03-17 23:25:23.208 -07 000000486 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 27 ms overall
17-03-17 23:25:23.208 -07 000000486 INF: Z Motor: MoveAbsStepped took 30 ms (did NOT wait for settling yet))
17-03-17 23:25:23.378 -07 000000486 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:25:23.378 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 195 ms to get response, and 203 ms overall
17-03-17 23:25:23.558 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-17 23:25:23.558 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 382 ms overall
17-03-17 23:25:23.608 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:25:23.608 -07 000000576 INF: FPGA: Recv YRDPOS 144770
17-03-17 23:25:23.618 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:23.618 -07 000000382 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:25:23.618 -07 000000382 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 23:25:23.618 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 382 ms, distance = 0.839 mm, average velocity = 2.197 mm/sec
17-03-17 23:25:24.568 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:25:24.568 -07 000000623 INF: FPGA: Recv YRDPOS 144770
17-03-17 23:25:24.578 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:25:24.578 -07 000000382 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:25:24.598 -07 000000382 INF: Y Motor: After move to 70.702606, error = -0.014130, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:25:24.598 -07 000000382 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:25:24.598 -07 000000382 INF: Y Motor: Moved to 70.6885 after 1762 ms (table move)
17-03-17 23:25:24.608 -07 000000478 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135724 mm (DAC = 29649)
17-03-17 23:25:24.608 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:24.608 -07 000000482 INF: FPGA: Recv ZSGSRD 30415
17-03-17 23:25:24.618 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:25:24.618 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:24.618 -07 000000623 INF: FPGA: Recv ZSGSRD 30415
17-03-17 23:25:24.628 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:24.628 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:24.628 -07 000000486 INF: FPGA: Recv ZSGSRD 30422
17-03-17 23:25:24.638 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:24.648 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:24.648 -07 000000462 INF: FPGA: Recv ZSGSRD 30417
17-03-17 23:25:24.658 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:25:24.658 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:24.658 -07 000000623 INF: FPGA: Recv ZSGSRD 30423
17-03-17 23:25:24.668 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:24.668 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:24.668 -07 000000482 INF: FPGA: Recv ZSGSRD 30412
17-03-17 23:25:24.678 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:24.678 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:24.678 -07 000000623 INF: FPGA: Recv ZSGSRD 30412
17-03-17 23:25:24.688 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:24.688 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:24.688 -07 000000486 INF: FPGA: Recv ZSGSRD 30414
17-03-17 23:25:24.698 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:24.698 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:24.698 -07 000000623 INF: FPGA: Recv ZSGSRD 30414
17-03-17 23:25:24.708 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:24.708 -07 000000478 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:24.708 -07 000000382 INF: FPGA: Recv ZSGSRD 30426
17-03-17 23:25:24.718 -07 000000478 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:24.718 -07 000000478 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:25:24.718 -07 000000462 INF: FPGA: Recv ZPIEZORD 26286
17-03-17 23:25:24.728 -07 000000478 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:24.728 -07 000000478 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.524 V. Piezo Error = -9.1 V.
17-03-17 23:25:24.728 -07 000000478 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.7 um, Read 10 ADC samples: Avg = 30417 (-134.9 uncal um), Error = 0.8 uncal um, Median = 30415 (-134.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30412 (-134.9 uncal um), Max = 30426 (-135.0 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:25:24.728 -07 000000478 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30417, posNoise = 9, negNoise = 5
17-03-17 23:25:24.728 -07 000000478 INF: Z Motor: After move to -0.135724, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:25:24.728 -07 000000478 INF: Z Motor: Settle wait time = 1431 ms, measure time = 120 ms (allowed 150 ms), total time = 1551 ms
17-03-17 23:25:24.728 -07 000000478 INF: Z Motor: Waiting extra 30 ms after reading position to reach expected total of 150 ms
17-03-17 23:25:24.758 -07 000000478 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1917 ms
17-03-17 23:25:24.758 -07 000000478 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:25:24.758 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:25:24.758 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:25:24.758 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:25:24.758 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:25:24.758 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:25:24.758 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:25:24.758 -07 000000462 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:25:24.758 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:25:24.768 -07 000000462 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 23:25:24.768 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:25:24.778 -07 000000462 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms.
17-03-17 23:25:24.778 -07 000000462 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms.
17-03-17 23:25:24.778 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:25:24.828 -07 000000593 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:25:24.958 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 75, FrontChillerTemperature: 3.997626,
17-03-17 23:25:25.028 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:25:25.028 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:25:25.028 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:25:25.028 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 596199184, 0x0, 559484976) start.
17-03-17 23:25:25.068 -07 000000576 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:25:25.068 -07 000000475 INF: FPGA: Recv CAMSNAP
17-03-17 23:25:25.068 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 285 ms overall
17-03-17 23:25:25.138 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 596199184, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 23:25:25.138 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:25:25.148 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:25:25.148 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 23:25:25.168 -07 000000462 INF: Autofocus start
17-03-17 23:25:25.168 -07 000000478 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:25:25.168 -07 000000462 INF: MeasureProfile start
17-03-17 23:25:25.178 -07 000000593 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:25:25.178 -07 000000478 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:25:25.178 -07 000000478 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:25:25.178 -07 000000462 INF: MeasureProfile done
17-03-17 23:25:25.178 -07 000000462 INF: X=16  Z correction [um]=0.0530179
17-03-17 23:25:25.178 -07 000000462 INF: Autofocus finished
17-03-17 23:25:25.378 -07 000000486 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:25:25.378 -07 000000478 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:25:25.378 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6884765625, Z-position -0.135728612727078. ----------
17-03-17 23:25:25.378 -07 000000610 INF: Cycle	75	Tile	14	Exposure Settings		A	474	G	228	T	228	C	474
17-03-17 23:25:25.388 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28173, sync = True, waitForSettling = True)
17-03-17 23:25:25.388 -07 000000610 INF: Z Motor: Moving to -0.128968 mm, started at -0.135729 mm, distance = 6.76 um
17-03-17 23:25:25.388 -07 000000610 INF: FPGA: Xmit ZDACW 28173\n [Z Motor]
17-03-17 23:25:25.388 -07 000000462 INF: FPGA: Recv ZDACW
17-03-17 23:25:25.398 -07 000000610 INF: FPGA: 'ZDACW 28173' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:25:25.398 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:25:25.398 -07 000000382 INF: FPGA: Recv ZDACR 28173
17-03-17 23:25:25.408 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:25.408 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:25:25.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:25.558 -07 000000623 INF: FPGA: Recv ZSGSRD 29366
17-03-17 23:25:25.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:25.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:25.568 -07 000000482 INF: FPGA: Recv ZSGSRD 29360
17-03-17 23:25:25.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:25.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:25.578 -07 000000486 INF: FPGA: Recv ZSGSRD 29365
17-03-17 23:25:25.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:25.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:25.588 -07 000000475 INF: FPGA: Recv ZSGSRD 29368
17-03-17 23:25:25.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:25.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:25.598 -07 000000482 INF: FPGA: Recv ZSGSRD 29359
17-03-17 23:25:25.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:25.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:25.608 -07 000000382 INF: FPGA: Recv ZSGSRD 29369
17-03-17 23:25:25.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:25.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:25.618 -07 000000382 INF: FPGA: Recv ZSGSRD 29362
17-03-17 23:25:25.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:25.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:25.628 -07 000000486 INF: FPGA: Recv ZSGSRD 29364
17-03-17 23:25:25.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:25.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:25.638 -07 000000475 INF: FPGA: Recv ZSGSRD 29362
17-03-17 23:25:25.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:25.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:25.648 -07 000000475 INF: FPGA: Recv ZSGSRD 29365
17-03-17 23:25:25.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:25.658 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:25:25.658 -07 000000623 INF: FPGA: Recv ZPIEZORD 24894
17-03-17 23:25:25.668 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:25.668 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.299 V. Piezo Error = -9.8 V.
17-03-17 23:25:25.668 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.0 um, Read 10 ADC samples: Avg = 29364 (-128.2 uncal um), Error = 0.8 uncal um, Median = 29364 (-128.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29359 (-128.2 uncal um), Max = 29369 (-128.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:25:25.668 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29364, posNoise = 5, negNoise = 5
17-03-17 23:25:25.668 -07 000000610 INF: Z Motor: After move to -0.128968, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:25:25.668 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 23:25:25.668 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:25:25.668 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:25:25.668 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:25:25.668 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:25:25.668 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:25:25.668 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:25:25.668 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:25:25.668 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:25:25.668 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:25:25.668 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:25:25.668 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:25:25.668 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:25:25.678 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:25:25.678 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:25:25.678 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 23:25:25.678 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:25:25.688 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 23:25:25.688 -07 000000382 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:25:25.688 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 23:25:25.688 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:25:25.698 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 474 474 228 228 28350 150\n [Camera]
17-03-17 23:25:25.898 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:25:26.368 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 666
17-03-17 23:25:26.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 666
17-03-17 23:25:26.368 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:25:26.368 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:25:26.368 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 23:25:26.368 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 666
17-03-17 23:25:26.368 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 666
17-03-17 23:25:26.378 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:25:26.378 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:25:26.378 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 23:25:26.558 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28350 859
17-03-17 23:25:26.708 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1009
17-03-17 23:25:26.768 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 23:25:26.768 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 23:25:26.768 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:25:26.768 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:25:26.768 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 23:25:26.778 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 23:25:26.778 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 23:25:26.778 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:25:26.778 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:25:26.788 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 23:25:26.938 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1237
17-03-17 23:25:26.938 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1237
17-03-17 23:25:26.938 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:25:26.938 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1237
17-03-17 23:25:26.938 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1237
17-03-17 23:25:26.938 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:25:26.938 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:25:26.938 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 23:25:26.948 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:25:26.948 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 23:25:27.068 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:25:27.068 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 74. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1192, R2=1246, Total=2438. Warn if over 250 bubbles per interval.
17-03-17 23:25:27.128 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP 1429
17-03-17 23:25:27.128 -07 000000486 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:25:27.128 -07 000000610 INF: FPGA: 'CAMDBLSNAP 474 474 228 228 28350 150' command took 2 ms to send, 1427 ms to get response, and 1436 ms overall
17-03-17 23:25:27.128 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:25:27.128 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6884765625, Z-Position -0.128963917341804. ------
17-03-17 23:25:27.138 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:25:27.138 -07 000000486 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13565 mm
17-03-17 23:25:27.138 -07 000000486 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:25:27.138 -07 000000551 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:25:27.138 -07 000000478 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 23:25:27.138 -07 000000478 INF: Y Motor: Moving to 71.5326 mm, started at 70.6885 mm, delta = 0.8441 mm
17-03-17 23:25:27.138 -07 000000433 INF: Z Motor: Entering MoveAbsStepped (DAC = 29633, sync = True, waitForSettling = False)
17-03-17 23:25:27.138 -07 000000433 INF: Z Motor: Moving to -0.135651 mm, started at -0.128964 mm, distance = -6.69 um
17-03-17 23:25:27.148 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:25:27.148 -07 000000433 INF: FPGA: Xmit ZDACW 29633\n [Z Motor]
17-03-17 23:25:27.148 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 23:25:27.158 -07 000000433 INF: FPGA: 'ZDACW 29633' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:25:27.158 -07 000000433 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:25:27.158 -07 000000551 INF: FPGA: Recv ZDACR 29633
17-03-17 23:25:27.168 -07 000000433 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:27.168 -07 000000433 INF: Z Motor: MoveAbsStepped took 20 ms (did NOT wait for settling yet))
17-03-17 23:25:27.168 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:25:27.168 -07 000000382 INF: FPGA: Recv YRDPOS 144770
17-03-17 23:25:27.178 -07 000000501 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:25:27.178 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 23:25:27.178 -07 000000478 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:25:27.178 -07 000000478 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:25:27.178 -07 000000478 INF: Y Motor: Moving 1351 steps-29
17-03-17 23:25:27.188 -07 000000478 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:25:27.338 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 23:25:27.338 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 23:25:27.338 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:25:27.338 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:25:27.338 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 23:25:27.338 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 23:25:27.338 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:25:27.348 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:25:27.348 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 23:25:27.348 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms.
17-03-17 23:25:27.378 -07 000000480 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:25:27.378 -07 000000501 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 232 ms overall
17-03-17 23:25:27.558 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-17 23:25:27.558 -07 000000478 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 23:25:27.608 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:25:27.608 -07 000000551 INF: FPGA: Recv YRDPOS 146471
17-03-17 23:25:27.618 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:25:27.618 -07 000000478 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:25:27.618 -07 000000478 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 23:25:27.618 -07 000000478 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.844 mm, average velocity = 2.181 mm/sec
17-03-17 23:25:28.568 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:25:28.568 -07 000000623 INF: FPGA: Recv YRDPOS 146471
17-03-17 23:25:28.578 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:25:28.578 -07 000000478 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:25:28.598 -07 000000478 INF: Y Motor: After move to 71.532608, error = -0.013565, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:25:28.598 -07 000000478 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:25:28.598 -07 000000478 INF: Y Motor: Moved to 71.5190 after 1457 ms (table move)
17-03-17 23:25:28.608 -07 000000486 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135651 mm (DAC = 29633)
17-03-17 23:25:28.608 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:28.608 -07 000000501 INF: FPGA: Recv ZSGSRD 30412
17-03-17 23:25:28.618 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:28.618 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:28.618 -07 000000478 INF: FPGA: Recv ZSGSRD 30404
17-03-17 23:25:28.628 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:28.628 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:28.628 -07 000000623 INF: FPGA: Recv ZSGSRD 30412
17-03-17 23:25:28.638 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:28.638 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:28.638 -07 000000382 INF: FPGA: Recv ZSGSRD 30410
17-03-17 23:25:28.648 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:28.648 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:28.648 -07 000000501 INF: FPGA: Recv ZSGSRD 30412
17-03-17 23:25:28.658 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:28.658 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:28.658 -07 000000382 INF: FPGA: Recv ZSGSRD 30407
17-03-17 23:25:28.668 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:28.668 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:28.668 -07 000000501 INF: FPGA: Recv ZSGSRD 30398
17-03-17 23:25:28.678 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:28.678 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:28.678 -07 000000478 INF: FPGA: Recv ZSGSRD 30411
17-03-17 23:25:28.688 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:28.688 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:28.688 -07 000000623 INF: FPGA: Recv ZSGSRD 30401
17-03-17 23:25:28.698 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:28.698 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:28.698 -07 000000478 INF: FPGA: Recv ZSGSRD 30408
17-03-17 23:25:28.708 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:28.708 -07 000000486 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:25:28.708 -07 000000623 INF: FPGA: Recv ZPIEZORD 26290
17-03-17 23:25:28.718 -07 000000486 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:28.718 -07 000000486 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.522 V. Piezo Error = -9.1 V.
17-03-17 23:25:28.718 -07 000000486 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.7 um, Read 10 ADC samples: Avg = 30408 (-134.9 uncal um), Error = 0.8 uncal um, Median = 30409 (-134.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30398 (-134.8 uncal um), Max = 30412 (-134.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 23:25:28.718 -07 000000486 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30408, posNoise = 4, negNoise = 10
17-03-17 23:25:28.718 -07 000000486 INF: Z Motor: After move to -0.135651, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:25:28.718 -07 000000486 INF: Z Motor: Settle wait time = 1460 ms, measure time = 110 ms (allowed 150 ms), total time = 1570 ms
17-03-17 23:25:28.718 -07 000000486 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 23:25:28.758 -07 000000486 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1616 ms
17-03-17 23:25:28.758 -07 000000486 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:25:28.758 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:25:28.758 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:25:28.758 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:25:28.758 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:25:28.758 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:25:28.758 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:25:28.758 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:25:28.758 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:25:28.768 -07 000000478 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:25:28.768 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:25:28.778 -07 000000478 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms.
17-03-17 23:25:28.778 -07 000000478 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 23:25:28.778 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:25:28.828 -07 000000475 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:25:29.018 -07 000000433 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:25:29.028 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:25:29.028 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:25:29.028 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1113297000, 0x0, 559484976) start.
17-03-17 23:25:29.058 -07 000000475 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:25:29.068 -07 000000382 INF: FPGA: Recv CAMSNAP
17-03-17 23:25:29.068 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 23:25:29.138 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1113297000, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 23:25:29.138 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:25:29.138 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:25:29.138 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 23:25:29.168 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:25:29.168 -07 000000551 INF: Autofocus start
17-03-17 23:25:29.168 -07 000000551 INF: MeasureProfile start
17-03-17 23:25:29.168 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:25:29.178 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:25:29.178 -07 000000486 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:25:29.188 -07 000000551 INF: MeasureProfile done
17-03-17 23:25:29.188 -07 000000551 INF: X=16  Z correction [um]=0.0530179
17-03-17 23:25:29.188 -07 000000551 INF: Autofocus finished
17-03-17 23:25:29.378 -07 000000429 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:25:29.378 -07 000000486 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 202 ms overall
17-03-17 23:25:29.378 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51904296875, Z-position -0.135670794817802. ----------
17-03-17 23:25:29.378 -07 000000610 INF: Cycle	75	Tile	15	Exposure Settings		A	474	G	228	T	228	C	474
17-03-17 23:25:29.388 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28157, sync = True, waitForSettling = True)
17-03-17 23:25:29.388 -07 000000610 INF: Z Motor: Moving to -0.128894 mm, started at -0.135671 mm, distance = 6.78 um
17-03-17 23:25:29.388 -07 000000610 INF: FPGA: Xmit ZDACW 28157\n [Z Motor]
17-03-17 23:25:29.388 -07 000000478 INF: FPGA: Recv ZDACW
17-03-17 23:25:29.398 -07 000000610 INF: FPGA: 'ZDACW 28157' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:29.398 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:25:29.398 -07 000000576 INF: FPGA: Recv ZDACR 28157
17-03-17 23:25:29.408 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:29.408 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:25:29.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:29.558 -07 000000480 INF: FPGA: Recv ZSGSRD 29351
17-03-17 23:25:29.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:25:29.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:29.568 -07 000000576 INF: FPGA: Recv ZSGSRD 29360
17-03-17 23:25:29.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:29.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:29.578 -07 000000475 INF: FPGA: Recv ZSGSRD 29356
17-03-17 23:25:29.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:29.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:29.588 -07 000000433 INF: FPGA: Recv ZSGSRD 29354
17-03-17 23:25:29.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:25:29.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:29.598 -07 000000576 INF: FPGA: Recv ZSGSRD 29354
17-03-17 23:25:29.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:29.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:29.608 -07 000000502 INF: FPGA: Recv ZSGSRD 29353
17-03-17 23:25:29.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:29.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:29.618 -07 000000576 INF: FPGA: Recv ZSGSRD 29357
17-03-17 23:25:29.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:29.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:29.628 -07 000000551 INF: FPGA: Recv ZSGSRD 29352
17-03-17 23:25:29.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:29.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:29.638 -07 000000429 INF: FPGA: Recv ZSGSRD 29358
17-03-17 23:25:29.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:29.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:29.648 -07 000000482 INF: FPGA: Recv ZSGSRD 29360
17-03-17 23:25:29.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:29.658 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:25:29.658 -07 000000480 INF: FPGA: Recv ZPIEZORD 24928
17-03-17 23:25:29.668 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:29.668 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.296 V. Piezo Error = -9.7 V.
17-03-17 23:25:29.668 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.9 um, Read 10 ADC samples: Avg = 29356 (-128.1 uncal um), Error = 0.8 uncal um, Median = 29355 (-128.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29351 (-128.1 uncal um), Max = 29360 (-128.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:25:29.668 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29356, posNoise = 4, negNoise = 5
17-03-17 23:25:29.668 -07 000000610 INF: Z Motor: After move to -0.128894, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:25:29.668 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 23:25:29.668 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:25:29.668 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:25:29.668 -07 000000382 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:25:29.668 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:25:29.668 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:25:29.668 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:25:29.668 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:25:29.668 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:25:29.668 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:25:29.668 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:25:29.668 -07 000000478 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 23:25:29.668 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:25:29.668 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 23:25:29.668 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:25:29.668 -07 000000478 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 23:25:29.668 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:25:29.678 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 23:25:29.678 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms.
17-03-17 23:25:29.678 -07 000000478 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 23:25:29.678 -07 000000478 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:25:29.688 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 474 474 228 228 28334 150\n [Camera]
17-03-17 23:25:29.888 -07 000000478 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:25:30.318 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 75, FrontChillerTemperature: 3.969015,
17-03-17 23:25:30.358 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 666
17-03-17 23:25:30.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 666
17-03-17 23:25:30.358 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:25:30.358 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:25:30.358 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) start.
17-03-17 23:25:30.358 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 666
17-03-17 23:25:30.358 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 666
17-03-17 23:25:30.358 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:25:30.358 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:25:30.368 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2216660184, 0x0, 418435064) start.
17-03-17 23:25:30.558 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28334 862
17-03-17 23:25:30.698 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1009
17-03-17 23:25:30.738 -07 000000478 INF: Camera: sBCa_ReadImage(785074704, 2216660184, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 23:25:30.738 -07 000000478 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 23:25:30.738 -07 000000478 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:25:30.738 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 23:25:30.738 -07 000000478 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:25:30.738 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 23:25:30.738 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:25:30.748 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:25:30.748 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 23:25:30.748 -07 000000478 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 23:25:30.928 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1237
17-03-17 23:25:30.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1237
17-03-17 23:25:30.928 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:25:30.928 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1237
17-03-17 23:25:30.938 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:25:30.938 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start.
17-03-17 23:25:30.938 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1237
17-03-17 23:25:30.938 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:25:30.938 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:25:30.938 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 23:25:31.118 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1430
17-03-17 23:25:31.118 -07 000000486 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:25:31.118 -07 000000610 INF: FPGA: 'CAMDBLSNAP 474 474 228 228 28334 150' command took 2 ms to send, 1428 ms to get response, and 1437 ms overall
17-03-17 23:25:31.128 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:25:31.128 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51904296875, Z-Position -0.12891252364467. ------
17-03-17 23:25:31.128 -07 000000486 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13528 mm
17-03-17 23:25:31.128 -07 000000486 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:25:31.128 -07 000000593 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:25:31.128 -07 000000478 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 23:25:31.128 -07 000000478 INF: Y Motor: Moving to 72.3626 mm, started at 71.5190 mm, delta = 0.8436 mm
17-03-17 23:25:31.128 -07 000000382 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:25:31.128 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 29552, sync = True, waitForSettling = False)
17-03-17 23:25:31.128 -07 000000576 INF: Z Motor: Moving to -0.135280 mm, started at -0.128913 mm, distance = -6.37 um
17-03-17 23:25:31.138 -07 000000593 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:25:31.138 -07 000000576 INF: FPGA: Xmit ZDACW 29552\n [Z Motor]
17-03-17 23:25:31.138 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 23:25:31.148 -07 000000576 INF: FPGA: 'ZDACW 29552' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 23:25:31.148 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:25:31.148 -07 000000462 INF: FPGA: Recv YRDPOS 146472
17-03-17 23:25:31.158 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall
17-03-17 23:25:31.158 -07 000000593 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:25:31.158 -07 000000478 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:25:31.158 -07 000000478 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:25:31.158 -07 000000478 INF: Y Motor: Moving 1349 steps-28
17-03-17 23:25:31.168 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:25:31.168 -07 000000501 INF: FPGA: Recv ZDACR 29552
17-03-17 23:25:31.178 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:25:31.178 -07 000000478 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:25:31.178 -07 000000576 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet))
17-03-17 23:25:31.328 -07 000000551 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 23:25:31.328 -07 000000551 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 23:25:31.328 -07 000000551 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:25:31.338 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 23:25:31.338 -07 000000551 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:25:31.338 -07 000000551 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 23:25:31.338 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 23:25:31.338 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:25:31.338 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:25:31.348 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms.
17-03-17 23:25:31.358 -07 000000501 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:25:31.358 -07 000000593 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 23:25:31.548 -07 000000623 INF: FPGA: Recv YMVTILE
17-03-17 23:25:31.548 -07 000000478 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 392 ms overall
17-03-17 23:25:31.598 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:25:31.598 -07 000000382 INF: FPGA: Recv YRDPOS 148172
17-03-17 23:25:31.608 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:25:31.608 -07 000000478 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:25:31.608 -07 000000478 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 23:25:31.608 -07 000000478 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.844 mm, average velocity = 2.152 mm/sec
17-03-17 23:25:32.068 -07 000000462 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:25:32.068 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 74. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1192, R2=1246, Total=2438. Warn if over 250 bubbles per interval.
17-03-17 23:25:32.558 -07 000000478 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:25:32.558 -07 000000623 INF: FPGA: Recv YRDPOS 148173
17-03-17 23:25:32.568 -07 000000478 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:25:32.568 -07 000000478 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:25:32.588 -07 000000478 INF: Y Motor: After move to 72.362610, error = -0.012512, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:25:32.588 -07 000000478 INF: Y Motor: Position error after settling (table move) = -26 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 23:25:32.588 -07 000000478 INF: Y Motor: Moved to 72.3501 after 1460 ms (table move)
17-03-17 23:25:32.598 -07 000000486 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135280 mm (DAC = 29552)
17-03-17 23:25:32.598 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:32.598 -07 000000382 INF: FPGA: Recv ZSGSRD 30346
17-03-17 23:25:32.608 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:25:32.608 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:32.608 -07 000000382 INF: FPGA: Recv ZSGSRD 30344
17-03-17 23:25:32.618 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:32.618 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:32.618 -07 000000593 INF: FPGA: Recv ZSGSRD 30349
17-03-17 23:25:32.628 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:32.628 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:32.628 -07 000000501 INF: FPGA: Recv ZSGSRD 30351
17-03-17 23:25:32.638 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:32.638 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:32.638 -07 000000593 INF: FPGA: Recv ZSGSRD 30349
17-03-17 23:25:32.648 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:32.648 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:32.648 -07 000000382 INF: FPGA: Recv ZSGSRD 30347
17-03-17 23:25:32.658 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:32.658 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:32.658 -07 000000502 INF: FPGA: Recv ZSGSRD 30343
17-03-17 23:25:32.668 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:32.668 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:32.668 -07 000000478 INF: FPGA: Recv ZSGSRD 30347
17-03-17 23:25:32.678 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:32.678 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:32.678 -07 000000478 INF: FPGA: Recv ZSGSRD 30346
17-03-17 23:25:32.688 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:32.688 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:32.688 -07 000000478 INF: FPGA: Recv ZSGSRD 30344
17-03-17 23:25:32.698 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:32.698 -07 000000486 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:25:32.698 -07 000000501 INF: FPGA: Recv ZPIEZORD 26260
17-03-17 23:25:32.708 -07 000000486 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:32.708 -07 000000486 INF: Z Motor: Piezo is near 36.1 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.509 V. Piezo Error = -9.0 V.
17-03-17 23:25:32.708 -07 000000486 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.3 um, Read 10 ADC samples: Avg = 30347 (-134.5 uncal um), Error = 0.8 uncal um, Median = 30346 (-134.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30343 (-134.5 uncal um), Max = 30351 (-134.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:25:32.708 -07 000000486 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30347, posNoise = 4, negNoise = 4
17-03-17 23:25:32.708 -07 000000486 INF: Z Motor: After move to -0.135280, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:25:32.708 -07 000000486 INF: Z Motor: Settle wait time = 1465 ms, measure time = 107 ms (allowed 150 ms), total time = 1572 ms
17-03-17 23:25:32.708 -07 000000486 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 23:25:32.758 -07 000000486 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1625 ms
17-03-17 23:25:32.758 -07 000000486 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:25:32.758 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:25:32.758 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:25:32.758 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:25:32.758 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:25:32.758 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:25:32.758 -07 000000593 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:25:32.758 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:25:32.758 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:25:32.768 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:25:32.768 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:25:32.768 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 23:25:32.768 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms.
17-03-17 23:25:32.778 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:25:32.818 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:25:33.018 -07 000000478 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:25:33.018 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:25:33.018 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:25:33.018 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start.
17-03-17 23:25:33.058 -07 000000551 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:25:33.058 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-17 23:25:33.058 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 284 ms overall
17-03-17 23:25:33.138 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 23:25:33.138 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:25:33.138 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:25:33.138 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms.
17-03-17 23:25:33.158 -07 000000501 INF: Autofocus start
17-03-17 23:25:33.158 -07 000000501 INF: MeasureProfile start
17-03-17 23:25:33.158 -07 000000551 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:25:33.158 -07 000000576 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:25:33.168 -07 000000551 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:25:33.168 -07 000000551 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:25:33.168 -07 000000501 INF: MeasureProfile done
17-03-17 23:25:33.168 -07 000000501 INF: X=16  Z correction [um]=0.0530179
17-03-17 23:25:33.168 -07 000000501 INF: Autofocus finished
17-03-17 23:25:33.368 -07 000000593 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:25:33.368 -07 000000551 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:25:33.368 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.35009765625, Z-position -0.135278917877155. ----------
17-03-17 23:25:33.368 -07 000000610 INF: Cycle	75	Tile	16	Exposure Settings		A	474	G	228	T	228	C	474
17-03-17 23:25:33.378 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28076, sync = True, waitForSettling = True)
17-03-17 23:25:33.378 -07 000000610 INF: Z Motor: Moving to -0.128524 mm, started at -0.135279 mm, distance = 6.76 um
17-03-17 23:25:33.378 -07 000000610 INF: FPGA: Xmit ZDACW 28076\n [Z Motor]
17-03-17 23:25:33.378 -07 000000551 INF: FPGA: Recv ZDACW
17-03-17 23:25:33.388 -07 000000610 INF: FPGA: 'ZDACW 28076' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:25:33.388 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:25:33.388 -07 000000576 INF: FPGA: Recv ZDACR 28076
17-03-17 23:25:33.398 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:33.398 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:25:33.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:33.548 -07 000000502 INF: FPGA: Recv ZSGSRD 29297
17-03-17 23:25:33.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:33.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:33.558 -07 000000433 INF: FPGA: Recv ZSGSRD 29293
17-03-17 23:25:33.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:33.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:33.568 -07 000000593 INF: FPGA: Recv ZSGSRD 29300
17-03-17 23:25:33.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:33.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:33.578 -07 000000382 INF: FPGA: Recv ZSGSRD 29291
17-03-17 23:25:33.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:33.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:33.588 -07 000000593 INF: FPGA: Recv ZSGSRD 29300
17-03-17 23:25:33.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:33.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:33.598 -07 000000501 INF: FPGA: Recv ZSGSRD 29297
17-03-17 23:25:33.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:33.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:33.608 -07 000000382 INF: FPGA: Recv ZSGSRD 29292
17-03-17 23:25:33.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:33.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:33.618 -07 000000475 INF: FPGA: Recv ZSGSRD 29300
17-03-17 23:25:33.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:33.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:33.628 -07 000000382 INF: FPGA: Recv ZSGSRD 29291
17-03-17 23:25:33.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:33.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:33.638 -07 000000502 INF: FPGA: Recv ZSGSRD 29296
17-03-17 23:25:33.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:33.648 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:25:33.648 -07 000000433 INF: FPGA: Recv ZPIEZORD 24829
17-03-17 23:25:33.658 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:33.658 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.284 V. Piezo Error = -9.8 V.
17-03-17 23:25:33.658 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.5 um, Read 10 ADC samples: Avg = 29296 (-127.8 uncal um), Error = 0.8 uncal um, Median = 29296 (-127.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29291 (-127.7 uncal um), Max = 29300 (-127.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:25:33.658 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29296, posNoise = 4, negNoise = 5
17-03-17 23:25:33.658 -07 000000610 INF: Z Motor: After move to -0.128524, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:25:33.658 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 23:25:33.658 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:25:33.658 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:25:33.658 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:25:33.658 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:25:33.658 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:25:33.658 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:25:33.658 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:25:33.658 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:25:33.658 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:25:33.658 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:25:33.658 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:25:33.658 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:25:33.668 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:25:33.668 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:25:33.668 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:25:33.668 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:25:33.678 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 23:25:33.678 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:25:33.678 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 23:25:33.678 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 23:25:33.678 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 474 474 228 228 28253 150\n [Camera]
17-03-17 23:25:33.878 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning red on 193
17-03-17 23:25:34.358 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 666
17-03-17 23:25:34.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 666
17-03-17 23:25:34.358 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:25:34.358 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:25:34.358 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) start.
17-03-17 23:25:34.358 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 666
17-03-17 23:25:34.358 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 666
17-03-17 23:25:34.358 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:25:34.358 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:25:34.358 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) start.
17-03-17 23:25:34.548 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28253 859
17-03-17 23:25:34.698 -07 000000593 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1009
17-03-17 23:25:34.748 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2352550048, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 23:25:34.748 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 23:25:34.748 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:25:34.748 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2415923248, 0x0, 418435064) end. Duration was 394 ms.
17-03-17 23:25:34.748 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms.
17-03-17 23:25:34.748 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:25:34.748 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 23:25:34.748 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms.
17-03-17 23:25:34.758 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:25:34.758 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 23:25:34.918 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1237
17-03-17 23:25:34.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1237
17-03-17 23:25:34.918 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:25:34.928 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:25:34.928 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) start.
17-03-17 23:25:34.928 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1237
17-03-17 23:25:34.928 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1237
17-03-17 23:25:34.928 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:25:34.928 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:25:34.928 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-17 23:25:35.108 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1429
17-03-17 23:25:35.118 -07 000000475 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:25:35.118 -07 000000610 INF: FPGA: 'CAMDBLSNAP 474 474 228 228 28253 150' command took 2 ms to send, 1430 ms to get response, and 1436 ms overall
17-03-17 23:25:35.118 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:25:35.118 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.35009765625, Z-Position -0.128527070916164. ------
17-03-17 23:25:35.118 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:25:35.118 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13514 mm
17-03-17 23:25:35.118 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:25:35.118 -07 000000475 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 23:25:35.118 -07 000000475 INF: Y Motor: Moving to 73.1926 mm, started at 72.3501 mm, delta = 0.8425 mm
17-03-17 23:25:35.128 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:25:35.328 -07 000000593 INF: Camera: sBCa_ReadImage(785074288, 2451345512, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 23:25:35.328 -07 000000593 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 23:25:35.328 -07 000000593 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:25:35.328 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 23:25:35.328 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 23:25:35.328 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:25:35.328 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:25:35.338 -07 000000593 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 23:25:35.338 -07 000000593 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 23:25:35.338 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms.
17-03-17 23:25:35.348 -07 000000593 INF: Z Motor: Entering MoveAbsStepped (DAC = 29521, sync = True, waitForSettling = False)
17-03-17 23:25:35.348 -07 000000593 INF: Z Motor: Moving to -0.135138 mm, started at -0.128527 mm, distance = -6.61 um
17-03-17 23:25:35.348 -07 000000593 INF: FPGA: Xmit ZDACW 29521\n [Z Motor]
17-03-17 23:25:35.348 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:25:35.348 -07 000000433 INF: FPGA: Recv YRDPOS 148173
17-03-17 23:25:35.348 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 23:25:35.348 -07 000000475 INF: FPGA: 'YRDPOS' command took 2 ms to send, 216 ms to get response, and 229 ms overall
17-03-17 23:25:35.348 -07 000000475 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:25:35.348 -07 000000475 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:25:35.348 -07 000000475 INF: Y Motor: Moving 1348 steps-27
17-03-17 23:25:35.348 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 227 ms to get response, and 231 ms overall
17-03-17 23:25:35.358 -07 000000593 INF: FPGA: 'ZDACW 29521' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:25:35.368 -07 000000475 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:25:35.378 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:25:35.388 -07 000000593 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:25:35.388 -07 000000433 INF: FPGA: Recv ZDACR 29521
17-03-17 23:25:35.398 -07 000000593 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall
17-03-17 23:25:35.398 -07 000000593 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet))
17-03-17 23:25:35.578 -07 000000433 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:25:35.578 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 224 ms overall
17-03-17 23:25:35.678 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 75, FrontChillerTemperature: 3.989471,
17-03-17 23:25:35.738 -07 000000593 INF: FPGA: Recv YMVTILE
17-03-17 23:25:35.738 -07 000000475 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 390 ms overall
17-03-17 23:25:35.778 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:25:35.788 -07 000000429 INF: FPGA: Recv YRDPOS 149865
17-03-17 23:25:35.788 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 23:25:35.788 -07 000000475 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:25:35.788 -07 000000475 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-17 23:25:35.788 -07 000000475 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.843 mm, average velocity = 2.160 mm/sec
17-03-17 23:25:36.738 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:25:36.738 -07 000000433 INF: FPGA: Recv YRDPOS 149865
17-03-17 23:25:36.748 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:25:36.748 -07 000000475 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:25:36.768 -07 000000475 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:25:36.768 -07 000000475 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:25:36.768 -07 000000475 INF: Y Motor: Moved to 73.1763 after 1648 ms (table move)
17-03-17 23:25:36.768 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135138 mm (DAC = 29521)
17-03-17 23:25:36.768 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:36.778 -07 000000433 INF: FPGA: Recv ZSGSRD 30323
17-03-17 23:25:36.788 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:25:36.788 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:36.788 -07 000000502 INF: FPGA: Recv ZSGSRD 30319
17-03-17 23:25:36.798 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:36.798 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:36.798 -07 000000429 INF: FPGA: Recv ZSGSRD 30326
17-03-17 23:25:36.808 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:36.808 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:36.808 -07 000000482 INF: FPGA: Recv ZSGSRD 30323
17-03-17 23:25:36.818 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:36.818 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:36.818 -07 000000433 INF: FPGA: Recv ZSGSRD 30325
17-03-17 23:25:36.828 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:36.828 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:36.828 -07 000000482 INF: FPGA: Recv ZSGSRD 30332
17-03-17 23:25:36.838 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:36.838 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:36.838 -07 000000433 INF: FPGA: Recv ZSGSRD 30331
17-03-17 23:25:36.848 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:36.848 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:36.848 -07 000000593 INF: FPGA: Recv ZSGSRD 30325
17-03-17 23:25:36.858 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:36.858 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:36.858 -07 000000475 INF: FPGA: Recv ZSGSRD 30317
17-03-17 23:25:36.868 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:36.868 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:36.868 -07 000000480 INF: FPGA: Recv ZSGSRD 30325
17-03-17 23:25:36.878 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:36.878 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:25:36.878 -07 000000475 INF: FPGA: Recv ZPIEZORD 26187
17-03-17 23:25:36.888 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:36.888 -07 000000382 INF: Z Motor: Piezo is near 35.9 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.505 V. Piezo Error = -9.1 V.
17-03-17 23:25:36.888 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.1 um, Read 10 ADC samples: Avg = 30325 (-134.3 uncal um), Error = 0.8 uncal um, Median = 30325 (-134.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30317 (-134.3 uncal um), Max = 30332 (-134.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 23:25:36.888 -07 000000382 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30325, posNoise = 7, negNoise = 8
17-03-17 23:25:36.888 -07 000000382 INF: Z Motor: After move to -0.135138, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:25:36.888 -07 000000382 INF: Z Motor: Settle wait time = 1426 ms, measure time = 111 ms (allowed 150 ms), total time = 1537 ms
17-03-17 23:25:36.888 -07 000000382 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 23:25:36.928 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1804 ms
17-03-17 23:25:36.928 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:25:36.928 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:25:36.928 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:25:36.928 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:25:36.928 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:25:36.928 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:25:36.928 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:25:36.928 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:25:36.928 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:25:36.938 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 23:25:36.938 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:25:36.948 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms.
17-03-17 23:25:36.948 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms.
17-03-17 23:25:36.948 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:25:36.998 -07 000000593 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:25:37.068 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:25:37.068 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 74. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1192, R2=1246, Total=2438. Warn if over 250 bubbles per interval.
17-03-17 23:25:37.198 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:25:37.198 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:25:37.198 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:25:37.198 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) start.
17-03-17 23:25:37.238 -07 000000475 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:25:37.238 -07 000000429 INF: FPGA: Recv CAMSNAP
17-03-17 23:25:37.238 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 273 ms to get response, and 284 ms overall
17-03-17 23:25:37.318 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1201016592, 0x0, 559484976) end. Duration was 117 ms.
17-03-17 23:25:37.318 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:25:37.318 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 23:25:37.318 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 23:25:37.338 -07 000000475 INF: Autofocus start
17-03-17 23:25:37.338 -07 000000475 INF: MeasureProfile start
17-03-17 23:25:37.338 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:25:37.338 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:25:37.348 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:25:37.348 -07 000000482 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:25:37.348 -07 000000475 INF: MeasureProfile done
17-03-17 23:25:37.348 -07 000000475 INF: X=9  Z correction [um]=0.01934518
17-03-17 23:25:37.348 -07 000000475 INF: Autofocus finished
17-03-17 23:25:37.548 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:25:37.548 -07 000000482 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:25:37.548 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.135137585210036. ----------
17-03-17 23:25:37.548 -07 000000610 INF: Cycle	75	Tile	17	Exposure Settings		A	474	G	228	T	228	C	474
17-03-17 23:25:37.558 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28038, sync = True, waitForSettling = True)
17-03-17 23:25:37.558 -07 000000610 INF: Z Motor: Moving to -0.128350 mm, started at -0.135138 mm, distance = 6.79 um
17-03-17 23:25:37.558 -07 000000610 INF: FPGA: Xmit ZDACW 28038\n [Z Motor]
17-03-17 23:25:37.558 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 23:25:37.568 -07 000000610 INF: FPGA: 'ZDACW 28038' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:37.568 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:25:37.568 -07 000000593 INF: FPGA: Recv ZDACR 28038
17-03-17 23:25:37.578 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:37.578 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:25:37.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:37.728 -07 000000482 INF: FPGA: Recv ZSGSRD 29268
17-03-17 23:25:37.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:25:37.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:37.738 -07 000000382 INF: FPGA: Recv ZSGSRD 29272
17-03-17 23:25:37.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:37.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:37.748 -07 000000480 INF: FPGA: Recv ZSGSRD 29262
17-03-17 23:25:37.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:37.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:37.758 -07 000000593 INF: FPGA: Recv ZSGSRD 29269
17-03-17 23:25:37.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:37.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:37.768 -07 000000482 INF: FPGA: Recv ZSGSRD 29272
17-03-17 23:25:37.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:37.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:37.778 -07 000000502 INF: FPGA: Recv ZSGSRD 29268
17-03-17 23:25:37.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:37.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:37.788 -07 000000480 INF: FPGA: Recv ZSGSRD 29275
17-03-17 23:25:37.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:37.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:37.798 -07 000000475 INF: FPGA: Recv ZSGSRD 29270
17-03-17 23:25:37.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:37.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:37.808 -07 000000475 INF: FPGA: Recv ZSGSRD 29269
17-03-17 23:25:37.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:37.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:37.818 -07 000000502 INF: FPGA: Recv ZSGSRD 29271
17-03-17 23:25:37.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:37.828 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:25:37.828 -07 000000475 INF: FPGA: Recv ZPIEZORD 24812
17-03-17 23:25:37.838 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:37.838 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.278 V. Piezo Error = -9.8 V.
17-03-17 23:25:37.838 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.3 um, Read 10 ADC samples: Avg = 29270 (-127.6 uncal um), Error = 0.8 uncal um, Median = 29270 (-127.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29262 (-127.5 uncal um), Max = 29275 (-127.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 23:25:37.838 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29270, posNoise = 5, negNoise = 8
17-03-17 23:25:37.838 -07 000000610 INF: Z Motor: After move to -0.128350, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:25:37.838 -07 000000610 INF: Z Motor: MoveAbsStepped took 282 ms)
17-03-17 23:25:37.838 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:25:37.838 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:25:37.838 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:25:37.838 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:25:37.838 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:25:37.838 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:25:37.838 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:25:37.838 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 23:25:37.838 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:25:37.838 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:25:37.838 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:25:37.838 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:25:37.848 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 23:25:37.848 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:25:37.848 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:25:37.848 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:25:37.858 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 23:25:37.858 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:25:37.858 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 23:25:37.858 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 23:25:37.858 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 474 474 228 228 28214 150\n [Camera]
17-03-17 23:25:38.058 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:25:38.528 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 666
17-03-17 23:25:38.528 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 666
17-03-17 23:25:38.538 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:25:38.538 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:25:38.538 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) start.
17-03-17 23:25:38.538 -07 000000429 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 666
17-03-17 23:25:38.538 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 666
17-03-17 23:25:38.538 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:25:38.538 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:25:38.538 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) start.
17-03-17 23:25:38.728 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28214 859
17-03-17 23:25:38.878 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1013
17-03-17 23:25:38.918 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2550140976, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 23:25:38.918 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 23:25:38.918 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:25:38.918 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2585563240, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 23:25:38.918 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 23:25:38.918 -07 000000482 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:25:38.918 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:25:38.918 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 23:25:38.918 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:25:38.928 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 23:25:39.108 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1237
17-03-17 23:25:39.108 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1237
17-03-17 23:25:39.108 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:25:39.108 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:25:39.108 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) start.
17-03-17 23:25:39.108 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1237
17-03-17 23:25:39.108 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1237
17-03-17 23:25:39.108 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:25:39.108 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:25:39.108 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start.
17-03-17 23:25:39.298 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP 1430
17-03-17 23:25:39.298 -07 000000482 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:25:39.298 -07 000000610 INF: FPGA: 'CAMDBLSNAP 474 474 228 228 28214 150' command took 2 ms to send, 1432 ms to get response, and 1437 ms overall
17-03-17 23:25:39.298 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:25:39.298 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17626953125, Z-Position -0.128360041400478. ------
17-03-17 23:25:39.298 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13469 mm
17-03-17 23:25:39.298 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:25:39.298 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:25:39.308 -07 000000482 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 23:25:39.308 -07 000000482 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-17 23:25:39.308 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:25:39.488 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 23:25:39.488 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 23:25:39.488 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:25:39.488 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:25:39.498 -07 000000429 INF: Camera: sBCa_ReadImage(785074288, 2620985504, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 23:25:39.498 -07 000000429 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 23:25:39.498 -07 000000429 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:25:39.498 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 23:25:39.508 -07 000000429 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 23:25:39.508 -07 000000429 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 23:25:39.508 -07 000000475 INF: Z Motor: Entering MoveAbsStepped (DAC = 29423, sync = True, waitForSettling = False)
17-03-17 23:25:39.508 -07 000000475 INF: Z Motor: Moving to -0.134690 mm, started at -0.128360 mm, distance = -6.33 um
17-03-17 23:25:39.508 -07 000000475 INF: FPGA: Xmit ZDACW 29423\n [Z Motor]
17-03-17 23:25:39.508 -07 000000429 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:25:39.518 -07 000000429 INF: FPGA: Recv YRDPOS 149865
17-03-17 23:25:39.518 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 199 ms to get response, and 207 ms overall
17-03-17 23:25:39.518 -07 000000482 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:25:39.518 -07 000000482 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:25:39.518 -07 000000482 INF: Y Motor: Moving 1354 steps-33
17-03-17 23:25:39.518 -07 000000429 INF: FPGA: Recv ZDACW
17-03-17 23:25:39.518 -07 000000475 INF: FPGA: 'ZDACW 29423' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 23:25:39.518 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 209 ms to get response, and 210 ms overall
17-03-17 23:25:39.518 -07 000000482 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:25:39.528 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:25:39.538 -07 000000475 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:25:39.538 -07 000000429 INF: FPGA: Recv ZDACR 29423
17-03-17 23:25:39.548 -07 000000475 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:25:39.548 -07 000000475 INF: Z Motor: MoveAbsStepped took 32 ms (did NOT wait for settling yet))
17-03-17 23:25:39.728 -07 000000429 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:25:39.728 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 211 ms overall
17-03-17 23:25:39.888 -07 000000475 INF: FPGA: Recv YMVTILE
17-03-17 23:25:39.898 -07 000000482 INF: FPGA: 'YMVTILE 1327' command took 1 ms to send, 369 ms to get response, and 379 ms overall
17-03-17 23:25:39.928 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:25:39.928 -07 000000475 INF: FPGA: Recv YRDPOS 151569
17-03-17 23:25:39.938 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:25:39.938 -07 000000482 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:25:39.938 -07 000000482 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 23:25:39.938 -07 000000482 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 379 ms, distance = 0.846 mm, average velocity = 2.233 mm/sec
17-03-17 23:25:40.888 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:25:40.888 -07 000000475 INF: FPGA: Recv YRDPOS 151569
17-03-17 23:25:40.898 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:40.898 -07 000000482 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:25:40.918 -07 000000482 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:25:40.918 -07 000000482 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:25:40.918 -07 000000482 INF: Y Motor: Moved to 74.0083 after 1608 ms (table move)
17-03-17 23:25:40.918 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134690 mm (DAC = 29423)
17-03-17 23:25:40.918 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:40.918 -07 000000501 INF: FPGA: Recv ZSGSRD 30261
17-03-17 23:25:40.928 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:25:40.928 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:40.928 -07 000000482 INF: FPGA: Recv ZSGSRD 30260
17-03-17 23:25:40.938 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:40.938 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:40.938 -07 000000501 INF: FPGA: Recv ZSGSRD 30257
17-03-17 23:25:40.948 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:40.948 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:40.948 -07 000000551 INF: FPGA: Recv ZSGSRD 30251
17-03-17 23:25:40.958 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:40.958 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:40.958 -07 000000429 INF: FPGA: Recv ZSGSRD 30257
17-03-17 23:25:40.968 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:40.968 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:40.968 -07 000000478 INF: FPGA: Recv ZSGSRD 30256
17-03-17 23:25:40.978 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:40.978 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:40.978 -07 000000551 INF: FPGA: Recv ZSGSRD 30259
17-03-17 23:25:40.988 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:40.988 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:40.988 -07 000000478 INF: FPGA: Recv ZSGSRD 30250
17-03-17 23:25:40.998 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:40.998 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:40.998 -07 000000480 INF: FPGA: Recv ZSGSRD 30257
17-03-17 23:25:41.008 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:41.008 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:41.008 -07 000000482 INF: FPGA: Recv ZSGSRD 30258
17-03-17 23:25:41.018 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:41.018 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:25:41.018 -07 000000501 INF: FPGA: Recv ZPIEZORD 26134
17-03-17 23:25:41.028 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:41.028 -07 000000502 INF: Z Motor: Piezo is near 35.8 V (nominally 0 to 100 V), expect near 44.9 V, since DAC is at 4.490 V. Piezo Error = -9.1 V.
17-03-17 23:25:41.028 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.7 um, Read 10 ADC samples: Avg = 30257 (-133.9 uncal um), Error = 0.8 uncal um, Median = 30257 (-133.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30250 (-133.9 uncal um), Max = 30261 (-133.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 23:25:41.028 -07 000000502 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30257, posNoise = 4, negNoise = 7
17-03-17 23:25:41.028 -07 000000502 INF: Z Motor: After move to -0.134690, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:25:41.028 -07 000000502 INF: Z Motor: Settle wait time = 1406 ms, measure time = 106 ms (allowed 150 ms), total time = 1512 ms
17-03-17 23:25:41.028 -07 000000502 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 23:25:41.038 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 75, FrontChillerTemperature: 4.007176,
17-03-17 23:25:41.078 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1770 ms
17-03-17 23:25:41.078 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:25:41.078 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:25:41.078 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:25:41.078 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:25:41.078 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:25:41.078 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:25:41.078 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:25:41.078 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:25:41.078 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:25:41.088 -07 000000551 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:25:41.088 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:25:41.088 -07 000000551 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 23:25:41.088 -07 000000551 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 23:25:41.098 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:25:41.138 -07 000000551 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:25:41.338 -07 000000429 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:25:41.338 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:25:41.338 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:25:41.338 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2268957512, 0x0, 559484976) start.
17-03-17 23:25:41.378 -07 000000502 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:25:41.378 -07 000000475 INF: FPGA: Recv CAMSNAP
17-03-17 23:25:41.378 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 284 ms overall
17-03-17 23:25:41.458 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2268957512, 0x0, 559484976) end. Duration was 116 ms.
17-03-17 23:25:41.458 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:25:41.458 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 23:25:41.458 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms.
17-03-17 23:25:41.478 -07 000000501 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:25:41.478 -07 000000502 INF: Autofocus start
17-03-17 23:25:41.478 -07 000000502 INF: MeasureProfile start
17-03-17 23:25:41.478 -07 000000475 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:25:41.488 -07 000000501 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:25:41.488 -07 000000501 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:25:41.488 -07 000000502 INF: MeasureProfile done
17-03-17 23:25:41.488 -07 000000502 INF: X=0  Z correction [um]=-0.02394831
17-03-17 23:25:41.498 -07 000000502 INF: Autofocus finished
17-03-17 23:25:41.688 -07 000000482 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:25:41.688 -07 000000501 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:25:41.688 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.134700738784396. ----------
17-03-17 23:25:41.688 -07 000000610 INF: Cycle	75	Tile	18	Exposure Settings		A	474	G	228	T	228	C	474
17-03-17 23:25:41.698 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27931, sync = True, waitForSettling = True)
17-03-17 23:25:41.698 -07 000000610 INF: Z Motor: Moving to -0.127860 mm, started at -0.134701 mm, distance = 6.84 um
17-03-17 23:25:41.698 -07 000000610 INF: FPGA: Xmit ZDACW 27931\n [Z Motor]
17-03-17 23:25:41.698 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 23:25:41.708 -07 000000610 INF: FPGA: 'ZDACW 27931' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:41.708 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:25:41.708 -07 000000551 INF: FPGA: Recv ZDACR 27931
17-03-17 23:25:41.718 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:41.718 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:25:41.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:41.868 -07 000000480 INF: FPGA: Recv ZSGSRD 29193
17-03-17 23:25:41.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:25:41.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:41.878 -07 000000482 INF: FPGA: Recv ZSGSRD 29192
17-03-17 23:25:41.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:41.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:41.888 -07 000000551 INF: FPGA: Recv ZSGSRD 29196
17-03-17 23:25:41.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:41.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:41.898 -07 000000429 INF: FPGA: Recv ZSGSRD 29194
17-03-17 23:25:41.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:41.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:41.908 -07 000000551 INF: FPGA: Recv ZSGSRD 29191
17-03-17 23:25:41.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:25:41.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:41.918 -07 000000502 INF: FPGA: Recv ZSGSRD 29195
17-03-17 23:25:41.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:41.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:41.928 -07 000000502 INF: FPGA: Recv ZSGSRD 29193
17-03-17 23:25:41.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:41.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:41.938 -07 000000501 INF: FPGA: Recv ZSGSRD 29195
17-03-17 23:25:41.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:41.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:41.948 -07 000000475 INF: FPGA: Recv ZSGSRD 29193
17-03-17 23:25:41.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:41.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:41.958 -07 000000480 INF: FPGA: Recv ZSGSRD 29189
17-03-17 23:25:41.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:41.968 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:25:41.968 -07 000000480 INF: FPGA: Recv ZPIEZORD 24717
17-03-17 23:25:41.978 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:41.978 -07 000000610 INF: Z Motor: Piezo is near 32.8 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.262 V. Piezo Error = -9.8 V.
17-03-17 23:25:41.978 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.9 um, Read 10 ADC samples: Avg = 29193 (-127.1 uncal um), Error = 0.8 uncal um, Median = 29193 (-127.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29189 (-127.1 uncal um), Max = 29196 (-127.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:25:41.978 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29193, posNoise = 3, negNoise = 4
17-03-17 23:25:41.978 -07 000000610 INF: Z Motor: After move to -0.127860, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:25:41.978 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 23:25:41.978 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:25:41.978 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:25:41.978 -07 000000501 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:25:41.978 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:25:41.978 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:25:41.978 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:25:41.978 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:25:41.978 -07 000000551 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:25:41.978 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:25:41.978 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:25:41.978 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:25:41.978 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:25:41.988 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:25:41.988 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:25:41.988 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:25:41.988 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:25:41.988 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 23:25:41.988 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:25:41.998 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 23:25:41.998 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 23:25:41.998 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 474 474 228 228 28107 150\n [Camera]
17-03-17 23:25:42.068 -07 000000501 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:25:42.068 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 74. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1192, R2=1246, Total=2438. Warn if over 250 bubbles per interval.
17-03-17 23:25:42.198 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:25:42.668 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 666
17-03-17 23:25:42.668 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 666
17-03-17 23:25:42.668 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:25:42.668 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:25:42.668 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) start.
17-03-17 23:25:42.678 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 666
17-03-17 23:25:42.678 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 666
17-03-17 23:25:42.678 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:25:42.678 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:25:42.678 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) start.
17-03-17 23:25:42.868 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28107 859
17-03-17 23:25:43.018 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1009
17-03-17 23:25:43.068 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2719780968, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 23:25:43.068 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 23:25:43.068 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:25:43.078 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:25:43.078 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 23:25:43.078 -07 000000501 INF: Camera: sBCa_ReadImage(785074704, 2755203232, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 23:25:43.078 -07 000000501 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 23:25:43.078 -07 000000501 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:25:43.078 -07 000000501 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:25:43.088 -07 000000501 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 23:25:43.238 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1237
17-03-17 23:25:43.238 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1237
17-03-17 23:25:43.248 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:25:43.378 -07 000000501 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1237
17-03-17 23:25:43.378 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1237
17-03-17 23:25:43.378 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:25:43.378 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:25:43.378 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) start.
17-03-17 23:25:43.378 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:25:43.378 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) start.
17-03-17 23:25:43.438 -07 000000551 INF: FPGA: Recv @CAMDBLSNAP 1430
17-03-17 23:25:43.438 -07 000000551 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:25:43.438 -07 000000610 INF: FPGA: 'CAMDBLSNAP 474 474 228 228 28107 150' command took 2 ms to send, 1431 ms to get response, and 1437 ms overall
17-03-17 23:25:43.438 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:25:43.438 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00830078125, Z-Position -0.127865377065563. ------
17-03-17 23:25:43.438 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:25:43.438 -07 000000501 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13411 mm
17-03-17 23:25:43.438 -07 000000501 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:25:43.448 -07 000000551 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 23:25:43.448 -07 000000551 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-17 23:25:43.448 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:25:43.778 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 591793880, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 23:25:43.778 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 23:25:43.778 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:25:43.778 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 23:25:43.778 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 23:25:43.778 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:25:43.788 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:25:43.788 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:25:43.788 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 542 ms.
17-03-17 23:25:43.788 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms.
17-03-17 23:25:43.798 -07 000000475 INF: Z Motor: Entering MoveAbsStepped (DAC = 29296, sync = True, waitForSettling = False)
17-03-17 23:25:43.798 -07 000000475 INF: Z Motor: Moving to -0.134108 mm, started at -0.127865 mm, distance = -6.24 um
17-03-17 23:25:43.798 -07 000000475 INF: FPGA: Xmit ZDACW 29296\n [Z Motor]
17-03-17 23:25:43.798 -07 000000502 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:25:43.798 -07 000000502 INF: FPGA: Recv YRDPOS 151570
17-03-17 23:25:43.798 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 357 ms to get response, and 361 ms overall
17-03-17 23:25:43.798 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 347 ms to get response, and 357 ms overall
17-03-17 23:25:43.798 -07 000000551 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:25:43.798 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 23:25:43.808 -07 000000475 INF: FPGA: 'ZDACW 29296' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:25:43.808 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:25:43.808 -07 000000551 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:25:43.808 -07 000000551 INF: Y Motor: Moving 1350 steps-29
17-03-17 23:25:43.818 -07 000000551 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:25:43.828 -07 000000475 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:25:43.828 -07 000000502 INF: FPGA: Recv ZDACR 29296
17-03-17 23:25:43.838 -07 000000475 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:25:43.838 -07 000000475 INF: Z Motor: MoveAbsStepped took 34 ms (did NOT wait for settling yet))
17-03-17 23:25:44.008 -07 000000475 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:25:44.008 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 204 ms overall
17-03-17 23:25:44.188 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-17 23:25:44.188 -07 000000551 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 383 ms overall
17-03-17 23:25:44.218 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:25:44.218 -07 000000576 INF: FPGA: Recv YRDPOS 153256
17-03-17 23:25:44.228 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:25:44.228 -07 000000551 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:25:44.228 -07 000000551 INF: Y Motor: Position error before settling (table move) = -42 encoder counts (-0.021 mm)
17-03-17 23:25:44.228 -07 000000551 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.844 mm, average velocity = 2.199 mm/sec
17-03-17 23:25:45.178 -07 000000551 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:25:45.178 -07 000000576 INF: FPGA: Recv YRDPOS 153256
17-03-17 23:25:45.188 -07 000000551 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:45.188 -07 000000551 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:25:45.198 -07 000000551 INF: Y Motor: After move to 74.852608, error = -0.020576, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:25:45.198 -07 000000551 INF: Y Motor: Position error after settling (table move) = -42 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:25:45.198 -07 000000551 INF: Y Motor: Moved to 74.8320 after 1757 ms (table move)
17-03-17 23:25:45.208 -07 000000501 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134108 mm (DAC = 29296)
17-03-17 23:25:45.208 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:45.208 -07 000000486 INF: FPGA: Recv ZSGSRD 30167
17-03-17 23:25:45.218 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:25:45.218 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:45.218 -07 000000576 INF: FPGA: Recv ZSGSRD 30161
17-03-17 23:25:45.228 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:45.228 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:45.228 -07 000000502 INF: FPGA: Recv ZSGSRD 30159
17-03-17 23:25:45.238 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:45.238 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:45.238 -07 000000475 INF: FPGA: Recv ZSGSRD 30156
17-03-17 23:25:45.248 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:45.248 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:45.248 -07 000000486 INF: FPGA: Recv ZSGSRD 30169
17-03-17 23:25:45.258 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:45.258 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:45.258 -07 000000576 INF: FPGA: Recv ZSGSRD 30170
17-03-17 23:25:45.268 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:45.268 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:45.268 -07 000000502 INF: FPGA: Recv ZSGSRD 30169
17-03-17 23:25:45.278 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:45.278 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:45.278 -07 000000475 INF: FPGA: Recv ZSGSRD 30160
17-03-17 23:25:45.288 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:45.288 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:45.288 -07 000000502 INF: FPGA: Recv ZSGSRD 30162
17-03-17 23:25:45.298 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:45.298 -07 000000501 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:45.298 -07 000000576 INF: FPGA: Recv ZSGSRD 30165
17-03-17 23:25:45.308 -07 000000501 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:45.308 -07 000000501 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:25:45.308 -07 000000502 INF: FPGA: Recv ZPIEZORD 26027
17-03-17 23:25:45.318 -07 000000501 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:45.318 -07 000000501 INF: Z Motor: Piezo is near 35.6 V (nominally 0 to 100 V), expect near 44.7 V, since DAC is at 4.470 V. Piezo Error = -9.1 V.
17-03-17 23:25:45.318 -07 000000501 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.1 um, Read 10 ADC samples: Avg = 30164 (-133.3 uncal um), Error = 0.8 uncal um, Median = 30164 (-133.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30156 (-133.3 uncal um), Max = 30170 (-133.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 23:25:45.318 -07 000000501 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30164, posNoise = 6, negNoise = 8
17-03-17 23:25:45.318 -07 000000501 INF: Z Motor: After move to -0.134108, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:25:45.318 -07 000000501 INF: Z Motor: Settle wait time = 1406 ms, measure time = 108 ms (allowed 150 ms), total time = 1514 ms
17-03-17 23:25:45.318 -07 000000501 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms
17-03-17 23:25:45.368 -07 000000501 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1923 ms
17-03-17 23:25:45.368 -07 000000501 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:25:45.368 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:25:45.368 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:25:45.368 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:25:45.368 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:25:45.368 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:25:45.368 -07 000000462 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:25:45.368 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:25:45.368 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:25:45.378 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 23:25:45.378 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:25:45.378 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 23:25:45.378 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 23:25:45.388 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:25:45.428 -07 000000623 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:25:45.628 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:25:45.628 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:25:45.628 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:25:45.628 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) start.
17-03-17 23:25:45.668 -07 000000486 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:25:45.668 -07 000000551 INF: FPGA: Recv CAMSNAP
17-03-17 23:25:45.668 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 276 ms to get response, and 285 ms overall
17-03-17 23:25:45.748 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1077874736, 0x0, 559484976) end. Duration was 114 ms.
17-03-17 23:25:45.748 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:25:45.748 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:25:45.748 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 23:25:45.768 -07 000000462 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:25:45.768 -07 000000502 INF: Autofocus start
17-03-17 23:25:45.768 -07 000000502 INF: MeasureProfile start
17-03-17 23:25:45.768 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:25:45.778 -07 000000462 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:25:45.778 -07 000000462 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:25:45.778 -07 000000502 INF: MeasureProfile done
17-03-17 23:25:45.778 -07 000000502 INF: X=-32  Z correction [um]=-0.1591732
17-03-17 23:25:45.778 -07 000000502 INF: Autofocus finished
17-03-17 23:25:45.978 -07 000000551 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:25:45.978 -07 000000462 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 204 ms overall
17-03-17 23:25:45.988 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83203125, Z-position -0.134103287055213. ----------
17-03-17 23:25:45.988 -07 000000610 INF: Cycle	75	Tile	19	Exposure Settings		A	474	G	228	T	228	C	474
17-03-17 23:25:45.988 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27774, sync = True, waitForSettling = True)
17-03-17 23:25:45.988 -07 000000610 INF: Z Motor: Moving to -0.127141 mm, started at -0.134103 mm, distance = 6.96 um
17-03-17 23:25:45.988 -07 000000610 INF: FPGA: Xmit ZDACW 27774\n [Z Motor]
17-03-17 23:25:45.988 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 23:25:45.998 -07 000000610 INF: FPGA: 'ZDACW 27774' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:25:45.998 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:25:45.998 -07 000000502 INF: FPGA: Recv ZDACR 27774
17-03-17 23:25:46.008 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:46.008 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:25:46.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:46.158 -07 000000486 INF: FPGA: Recv ZSGSRD 29079
17-03-17 23:25:46.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:46.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:46.168 -07 000000623 INF: FPGA: Recv ZSGSRD 29087
17-03-17 23:25:46.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:46.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:46.178 -07 000000623 INF: FPGA: Recv ZSGSRD 29086
17-03-17 23:25:46.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:46.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:46.188 -07 000000475 INF: FPGA: Recv ZSGSRD 29082
17-03-17 23:25:46.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:46.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:46.198 -07 000000480 INF: FPGA: Recv ZSGSRD 29076
17-03-17 23:25:46.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:46.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:46.208 -07 000000623 INF: FPGA: Recv ZSGSRD 29086
17-03-17 23:25:46.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:46.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:46.218 -07 000000501 INF: FPGA: Recv ZSGSRD 29086
17-03-17 23:25:46.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:46.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:46.228 -07 000000623 INF: FPGA: Recv ZSGSRD 29077
17-03-17 23:25:46.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:46.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:46.238 -07 000000502 INF: FPGA: Recv ZSGSRD 29078
17-03-17 23:25:46.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:46.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:25:46.248 -07 000000486 INF: FPGA: Recv ZSGSRD 29087
17-03-17 23:25:46.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:46.258 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:25:46.258 -07 000000480 INF: FPGA: Recv ZPIEZORD 24589
17-03-17 23:25:46.268 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:25:46.268 -07 000000610 INF: Z Motor: Piezo is near 32.5 V (nominally 0 to 100 V), expect near 42.4 V, since DAC is at 4.238 V. Piezo Error = -9.9 V.
17-03-17 23:25:46.268 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.1 um, Read 10 ADC samples: Avg = 29082 (-126.4 uncal um), Error = 0.8 uncal um, Median = 29084 (-126.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29076 (-126.3 uncal um), Max = 29087 (-126.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:25:46.268 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29082, posNoise = 5, negNoise = 6
17-03-17 23:25:46.268 -07 000000610 INF: Z Motor: After move to -0.127141, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:25:46.268 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 23:25:46.268 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:25:46.268 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:25:46.268 -07 000000501 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:25:46.268 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:25:46.268 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:25:46.268 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:25:46.268 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 23:25:46.268 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:25:46.268 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:25:46.268 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:25:46.268 -07 000000551 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:25:46.268 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:25:46.278 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 23:25:46.278 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:25:46.278 -07 000000551 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:25:46.278 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:25:46.288 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 23:25:46.288 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 23:25:46.288 -07 000000551 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 23:25:46.288 -07 000000551 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 23:25:46.298 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 474 474 228 228 27950 150\n [Camera]
17-03-17 23:25:46.398 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 75, FrontChillerTemperature: 4.0344,
17-03-17 23:25:46.498 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:25:46.968 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 666
17-03-17 23:25:46.968 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 666
17-03-17 23:25:46.968 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:25:46.968 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 666
17-03-17 23:25:46.968 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 666
17-03-17 23:25:46.968 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:25:46.978 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:25:46.978 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1123698904, 0x0, 391868352) start.
17-03-17 23:25:46.978 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:25:46.978 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 23:25:47.068 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:25:47.068 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 74. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1192, R2=1246, Total=2438. Warn if over 250 bubbles per interval.
17-03-17 23:25:47.158 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27950 859
17-03-17 23:25:47.308 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1009
17-03-17 23:25:47.368 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1123698904, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 23:25:47.368 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 23:25:47.368 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:25:47.368 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 23:25:47.368 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 23:25:47.368 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:25:47.368 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:25:47.368 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 23:25:47.378 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:25:47.378 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms.
17-03-17 23:25:47.538 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1237
17-03-17 23:25:47.538 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1237
17-03-17 23:25:47.538 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:25:47.648 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1237
17-03-17 23:25:47.648 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1237
17-03-17 23:25:47.648 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:25:47.658 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:25:47.658 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) start.
17-03-17 23:25:47.658 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:25:47.658 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1092550816, 0x0, 418435064) start.
17-03-17 23:25:47.728 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1429
17-03-17 23:25:47.728 -07 000000433 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:25:47.728 -07 000000610 INF: FPGA: 'CAMDBLSNAP 474 474 228 228 27950 150' command took 2 ms to send, 1428 ms to get response, and 1436 ms overall
17-03-17 23:25:48.058 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 574918816, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 23:25:48.058 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 23:25:48.058 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1092550816, 0x0, 418435064) end. Duration was 402 ms.
17-03-17 23:25:48.058 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms.
17-03-17 23:25:48.058 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:25:48.058 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:25:48.068 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:25:48.068 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 23:25:48.068 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 526 ms.
17-03-17 23:25:48.068 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 23:25:48.078 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 421 ms.
17-03-17 23:25:48.108 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 23:25:48.108 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 23:25:48.148 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms.
17-03-17 23:25:48.168 -07 000000610 INF: Enabling Skipping AutoFocus in the next 0 cycles.
17-03-17 23:25:48.168 -07 000000610 INF: Imaging Cycle 75: ScanTilesCommand Cycle 75 time end. Duration was 165776 ms.
17-03-17 23:25:48.168 -07 000000610 INF: =================== Cycle #75 ===================
17-03-17 23:25:48.168 -07 000000610 INF: ===================  ===================
17-03-17 23:25:48.168 -07 000000486 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 23:25:48.178 -07 000000433 INF: FPGA: Recv EXLED1ADCR 24
17-03-17 23:25:48.178 -07 000000486 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:25:48.178 -07 000000486 INF: GreenLED: Using Green data: Photodiode ADC 24 --> 0.0 mW (old method), or 1.7 mW (new method). Difference = 1.7 mW
17-03-17 23:25:48.178 -07 000000486 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 75, FrontChillerTemperature: 4.0344, FrontChillerHeatSinkTemperature: 0.429085, AmbientTemperature: 18.66502, FlowCellCompartmentTemperature: 21.98965, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.30358, GreenLEDSensorTemperature: 26.46719, PhotodiodePowerAdcGreen: 24, PhotodiodePowerMwGreen: 1.744678
17-03-17 23:25:48.228 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.