17-03-17 23:25:48.288 -07 000000610 INF: =================== Cycle #76 ===================
17-03-17 23:25:48.288 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-17 23:25:48.288 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8320 mm, delta = 0.5485 mm
17-03-17 23:25:48.288 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:25:48.288 -07 000000475 INF: FPGA: Recv YRDPOS 153257
17-03-17 23:25:48.298 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:25:48.298 -07 000000610 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:25:48.298 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-17 23:25:48.298 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-17 23:25:48.298 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-17 23:25:48.418 -07 000000623 INF: FPGA: Recv YMVTO 154377 871
17-03-17 23:25:48.418 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 110 ms to get response, and 115 ms overall
17-03-17 23:25:48.418 -07 000000610 INF: Y Motor: Position error before settling = -2 encoder counts (-0.001 mm)
17-03-17 23:25:48.418 -07 000000610 INF: Y Motor: To move from 74.833 to 75.381 (0.549 mm) should take 877 steps, but required 871 steps (0.544 mm). Slippage = -0.004 mm (-0.01%).
17-03-17 23:25:48.418 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 115 ms, distance = 0.549 mm, average velocity = 4.770 mm/sec
17-03-17 23:25:51.418 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:25:51.418 -07 000000480 INF: FPGA: Recv YRDPOS 154380
17-03-17 23:25:51.428 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:25:51.428 -07 000000610 INF: Y Motor: Encoder = 154380 = motor step 120609.4 = 75.3809 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:25:51.448 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.000279, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:25:51.448 -07 000000610 INF: Y Motor: Position error after settling = 1 encoder counts (0.000 mm), Delta during settling = 3 counts (0.001 mm)
17-03-17 23:25:51.448 -07 000000610 INF: Y Motor: Moved to 75.3809 after 3157 ms
17-03-17 23:25:51.448 -07 000000610 INF: =================== Cycle #76, Flow Cell Temp 60° ===================
17-03-17 23:25:51.448 -07 000000610 INF: =================== Cycle #76, Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-17 23:25:51.448 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-17 23:25:51.458 -07 000000486 INF: FPGA: Recv TEC2TEMP 
17-03-17 23:25:51.458 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 4 ms to get response, and 6 ms overall
17-03-17 23:25:51.458 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 23:25:51.458 -07 000000480 INF: FPGA: Recv TEC2EN 
17-03-17 23:25:51.468 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:25:51.468 -07 000000610 INF: =================== Cycle #76, Flow Cell Temp 60° ===================
17-03-17 23:25:51.468 -07 000000610 INF: =================== Cycle #76 ===================
17-03-17 23:25:51.468 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 23:25:51.468 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:25:51.498 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 23:25:51.498 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-17 23:25:51.498 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 23:25:51.758 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 4.011254,
17-03-17 23:25:51.798 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 23:25:51.818 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 23:25:51.818 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 23:25:51.868 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:25:51.888 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 23:25:51.888 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 23:25:51.988 -07 000000610 INF: =================== Cycle #76, Pumping Reagent PR2 (3) ===================
17-03-17 23:25:51.988 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 23:25:51.988 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:25:52.018 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 23:25:52.018 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 23:25:52.018 -07 000000610 INF: =================== Cycle #76, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 23:25:52.068 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:25:52.068 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 75. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1192, R2=1246, Total=2438. Warn if over 250 bubbles per interval.
17-03-17 23:25:52.148 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 23:25:52.188 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:25:55.318 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:25:55.348 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:25:55.768 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:25:55.798 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:25:56.218 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:25:56.248 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:25:56.248 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 23:25:56.248 -07 000000610 INF: =================== Cycle #76, Pumping Reagent PR2 (3) ===================
17-03-17 23:25:56.378 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:25:56.408 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 23:25:56.408 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 23:25:56.538 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:25:56.568 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 23:25:56.568 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 23:25:56.568 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 23:25:56.698 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 23:25:56.728 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:25:57.068 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 1
17-03-17 23:25:57.068 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 75. Bubbles during last 5000 ms interval: R1=1, R2=2, Total=3. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1193, R2=1248, Total=2441. Warn if over 250 bubbles per interval.
17-03-17 23:25:57.118 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 3.979922,
17-03-17 23:25:57.158 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:25:57.188 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:25:57.188 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 23:25:57.188 -07 000000610 INF: =================== Cycle #76 ===================
17-03-17 23:25:58.408 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 23:25:58.408 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-17 23:25:58.408 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:25:58.428 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 23:25:58.428 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-17 23:25:58.428 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-17 23:25:58.558 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 23:25:58.578 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-17 23:25:58.578 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-17 23:25:58.628 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:25:58.648 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 23:25:58.648 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 23:25:58.748 -07 000000610 INF: =================== Cycle #76, Pumping Reagent CMS (4) ===================
17-03-17 23:25:58.748 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 23:25:58.748 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:25:58.778 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 23:25:58.778 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 23:25:58.778 -07 000000610 INF: =================== Cycle #76, Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-17 23:25:58.908 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 23:25:58.948 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:26:00.388 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:26:00.418 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:26:00.838 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:26:00.868 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:26:00.868 -07 000000610 INF: LanePump: Waited 1920 ms for pump motion to complete
17-03-17 23:26:00.868 -07 000000610 INF: =================== Cycle #76, Pumping Reagent CMS (4) ===================
17-03-17 23:26:00.998 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:26:01.028 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 23:26:01.028 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 23:26:01.158 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:26:01.188 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 23:26:01.188 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 23:26:01.188 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 23:26:01.318 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 23:26:01.348 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:26:01.778 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:26:01.808 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:26:01.808 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 23:26:01.808 -07 000000610 INF: =================== Cycle #76 ===================
17-03-17 23:26:02.068 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 1
17-03-17 23:26:02.068 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 75. Bubbles during last 5000 ms interval: R1=1, R2=0, Total=1. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1194, R2=1248, Total=2442. Warn if over 250 bubbles per interval.
17-03-17 23:26:02.478 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 3.974486,
17-03-17 23:26:03.028 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 23:26:03.028 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 23:26:03.028 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:26:03.048 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 23:26:03.048 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-17 23:26:03.048 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-17 23:26:03.198 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 23:26:03.218 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-17 23:26:03.218 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-17 23:26:03.268 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:26:03.288 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 23:26:03.288 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 23:26:03.388 -07 000000610 INF: =================== Cycle #76, Pumping Reagent PR2 (3) ===================
17-03-17 23:26:03.388 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 23:26:03.388 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:26:03.418 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 23:26:03.418 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 23:26:03.418 -07 000000610 INF: =================== Cycle #76, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 23:26:03.548 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 23:26:03.588 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:26:04.458 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:26:04.488 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:26:04.488 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 23:26:04.488 -07 000000610 INF: =================== Cycle #76, Pumping Reagent PR2 (3) ===================
17-03-17 23:26:04.618 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:26:04.648 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 23:26:04.648 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 23:26:04.778 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:26:04.808 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 23:26:04.808 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 23:26:04.808 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 23:26:04.938 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 23:26:04.968 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:26:05.398 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:26:05.428 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:26:05.428 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 23:26:05.428 -07 000000610 INF: =================== Cycle #76 ===================
17-03-17 23:26:05.428 -07 000000475 INF: WaitCommand(10000) start
17-03-17 23:26:05.428 -07 000000623 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 23:26:05.428 -07 000000623 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 23:26:06.648 -07 000000623 INF: AsyncDelayTimer waited 1216ms
17-03-17 23:26:06.648 -07 000000623 INF: LanePump: Xmit /1?\r
17-03-17 23:26:06.678 -07 000000623 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 23:26:06.678 -07 000000623 INF: LanePump: Current Position of Pump is: 1110
17-03-17 23:26:06.808 -07 000000623 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 23:26:06.848 -07 000000623 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:26:07.068 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-17 23:26:07.068 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 75. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1195, R2=1249, Total=2444. Warn if over 250 bubbles per interval.
17-03-17 23:26:07.838 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 3.983999,
17-03-17 23:26:08.378 -07 000000623 INF: LanePump: Xmit /1Q\r
17-03-17 23:26:08.408 -07 000000623 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:26:08.828 -07 000000623 INF: LanePump: Xmit /1Q\r
17-03-17 23:26:08.858 -07 000000623 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:26:08.858 -07 000000623 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 23:26:08.858 -07 000000623 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 23:26:08.858 -07 000000623 INF: ===================  ===================
17-03-17 23:26:12.068 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:26:12.068 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 75. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1195, R2=1249, Total=2444. Warn if over 250 bubbles per interval.
17-03-17 23:26:13.198 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 3.997626,
17-03-17 23:26:15.438 -07 000000475 INF: WaitCommand(10000) end
17-03-17 23:26:15.438 -07 000000610 INF: =================== Cycle #76, Pumping Reagent PR2 (3) ===================
17-03-17 23:26:15.438 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-17 23:26:15.438 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:26:15.468 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 23:26:15.468 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 23:26:15.468 -07 000000610 INF: =================== Cycle #76, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 23:26:15.598 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-17 23:26:15.638 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:26:17.068 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-17 23:26:17.068 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 75. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1196, R2=1250, Total=2446. Warn if over 250 bubbles per interval.
17-03-17 23:26:18.558 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 4.014009,
17-03-17 23:26:21.768 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:26:21.798 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:26:22.068 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 5 R1 7
17-03-17 23:26:22.068 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 75. Bubbles during last 5000 ms interval: R1=7, R2=5, Total=12. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1203, R2=1255, Total=2458. Warn if over 250 bubbles per interval.
17-03-17 23:26:22.218 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:26:22.248 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:26:22.668 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:26:22.698 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:26:23.118 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:26:23.148 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:26:23.568 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:26:23.598 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:26:23.598 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-17 23:26:23.598 -07 000000610 INF: =================== Cycle #76, Pumping Reagent PR2 (3) ===================
17-03-17 23:26:23.728 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:26:23.758 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 23:26:23.758 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 23:26:23.888 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:26:23.918 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 23:26:23.918 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 23:26:23.918 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 23:26:23.918 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 4.000345,
17-03-17 23:26:24.048 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 23:26:24.078 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:26:24.508 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:26:24.538 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:26:24.538 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 23:26:24.538 -07 000000610 INF: =================== Cycle #76 ===================
17-03-17 23:26:25.758 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 23:26:25.758 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start
17-03-17 23:26:25.758 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:26:25.778 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 23:26:25.778 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions.
17-03-17 23:26:25.778 -07 000000610 INF: ReagentValve: Xmit -01\r
17-03-17 23:26:25.988 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 23:26:26.008 -07 000000610 INF: ReagentValve: Recv 0198\r
17-03-17 23:26:26.008 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%)
17-03-17 23:26:26.058 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:26:26.078 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 23:26:26.078 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 23:26:26.178 -07 000000610 INF: =================== Cycle #76, Pumping Reagent IMT (1) ===================
17-03-17 23:26:26.178 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 23:26:26.178 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:26:26.208 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 23:26:26.208 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 23:26:26.208 -07 000000610 INF: =================== Cycle #76, Pumping Reagent IMT (1), Aspirating port InputPort ===================
17-03-17 23:26:26.338 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 23:26:26.378 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:26:27.068 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 5 R1 1
17-03-17 23:26:27.068 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 75. Bubbles during last 5000 ms interval: R1=1, R2=5, Total=6. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1204, R2=1260, Total=2464. Warn if over 250 bubbles per interval.
17-03-17 23:26:27.818 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:26:27.848 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:26:28.268 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:26:28.298 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:26:28.298 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 23:26:28.298 -07 000000610 INF: =================== Cycle #76, Pumping Reagent IMT (1) ===================
17-03-17 23:26:28.428 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:26:28.458 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 23:26:28.458 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 23:26:28.588 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:26:28.618 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 23:26:28.618 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 23:26:28.618 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 23:26:28.748 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 23:26:28.778 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:26:29.208 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:26:29.238 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:26:29.238 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 23:26:29.238 -07 000000610 INF: =================== Cycle #76 ===================
17-03-17 23:26:29.278 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 4.001704,
17-03-17 23:26:30.458 -07 000000610 INF: AsyncDelayTimer waited 1218ms
17-03-17 23:26:30.458 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 23:26:30.458 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:26:30.478 -07 000000610 INF: ReagentValve: Recv 01\r
17-03-17 23:26:30.478 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions.
17-03-17 23:26:30.478 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 23:26:30.708 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 23:26:30.728 -07 000000610 INF: ReagentValve: Recv 01AC\r
17-03-17 23:26:30.728 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%)
17-03-17 23:26:30.778 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:26:30.798 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 23:26:30.798 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 23:26:30.898 -07 000000610 INF: =================== Cycle #76, Pumping Reagent PR2 (3) ===================
17-03-17 23:26:30.898 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 23:26:30.898 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:26:30.928 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n
17-03-17 23:26:30.928 -07 000000610 INF: LanePump: Current Position of Pump is: 1770
17-03-17 23:26:30.928 -07 000000610 INF: =================== Cycle #76, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 23:26:31.058 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 23:26:31.098 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:26:31.968 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:26:31.998 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:26:31.998 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 23:26:31.998 -07 000000610 INF: =================== Cycle #76, Pumping Reagent PR2 (3) ===================
17-03-17 23:26:32.068 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 8 R1 10
17-03-17 23:26:32.068 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 75. Bubbles during last 5000 ms interval: R1=10, R2=8, Total=18. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1214, R2=1268, Total=2482. Warn if over 250 bubbles per interval.
17-03-17 23:26:32.128 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:26:32.158 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 23:26:32.158 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 23:26:32.288 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:26:32.318 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 23:26:32.318 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 23:26:32.318 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 23:26:32.448 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 23:26:32.478 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:26:32.908 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:26:32.938 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:26:32.938 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 23:26:32.938 -07 000000610 INF: =================== Cycle #76 ===================
17-03-17 23:26:32.938 -07 000000610 INF: =================== Cycle #76, Flow Cell Temp 65° ===================
17-03-17 23:26:32.938 -07 000000610 INF: =================== Cycle #76, Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-17 23:26:32.938 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-17 23:26:32.938 -07 000000502 INF: FPGA: Recv TEC2TEMP 
17-03-17 23:26:32.948 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:26:32.948 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 23:26:32.948 -07 000000459 INF: FPGA: Recv TEC2EN 
17-03-17 23:26:32.958 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:26:32.958 -07 000000610 INF: =================== Cycle #76, Flow Cell Temp 65° ===================
17-03-17 23:26:32.958 -07 000000610 INF: =================== Cycle #76 ===================
17-03-17 23:26:32.958 -07 000000610 INF: WaitCommand(30000) start
17-03-17 23:26:34.638 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 4.003063,
17-03-17 23:26:37.068 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 23:26:37.068 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 75. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1214, R2=1269, Total=2483. Warn if over 250 bubbles per interval.
17-03-17 23:26:39.998 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 3.98264,
17-03-17 23:26:42.068 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:26:42.068 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 75. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1214, R2=1269, Total=2483. Warn if over 250 bubbles per interval.
17-03-17 23:26:45.358 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 3.999021,
17-03-17 23:26:47.068 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:26:47.068 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 75. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1214, R2=1269, Total=2483. Warn if over 250 bubbles per interval.
17-03-17 23:26:50.718 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 4.014009,
17-03-17 23:26:52.068 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:26:52.068 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 75. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1214, R2=1269, Total=2483. Warn if over 250 bubbles per interval.
17-03-17 23:26:56.078 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 3.999021,
17-03-17 23:26:57.068 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:26:57.068 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 75. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1214, R2=1269, Total=2483. Warn if over 250 bubbles per interval.
17-03-17 23:27:01.438 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 4.031682,
17-03-17 23:27:02.068 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:27:02.068 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 75. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1214, R2=1269, Total=2483. Warn if over 250 bubbles per interval.
17-03-17 23:27:02.968 -07 000000610 INF: WaitCommand(30000) end
17-03-17 23:27:02.968 -07 000000610 INF: =================== Cycle #76, Pumping Reagent PR2 (3) ===================
17-03-17 23:27:02.968 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1
17-03-17 23:27:03.068 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:27:03.098 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n
17-03-17 23:27:03.098 -07 000000610 INF: LanePump: Current Position of Pump is: 1890
17-03-17 23:27:03.098 -07 000000610 INF: =================== Cycle #76, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 23:27:03.228 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r
17-03-17 23:27:03.268 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:27:03.808 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:27:03.838 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:27:03.838 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete
17-03-17 23:27:03.838 -07 000000610 INF: =================== Cycle #76, Pumping Reagent PR2 (3) ===================
17-03-17 23:27:03.968 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:27:03.998 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 23:27:03.998 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 23:27:04.128 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:27:04.158 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 23:27:04.158 -07 000000610 INF: LanePump: Current Position of Pump is: 1920
17-03-17 23:27:04.158 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 23:27:04.288 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 23:27:04.318 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:27:04.748 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:27:04.778 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:27:04.778 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 23:27:04.778 -07 000000610 INF: =================== Cycle #76 ===================
17-03-17 23:27:04.778 -07 000000459 INF: WaitCommand(30000) start
17-03-17 23:27:04.778 -07 000000433 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 23:27:04.778 -07 000000433 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 23:27:05.998 -07 000000433 INF: AsyncDelayTimer waited 1216ms
17-03-17 23:27:05.998 -07 000000433 INF: LanePump: Xmit /1?\r
17-03-17 23:27:06.028 -07 000000433 INF: LanePump: Recv /0`1920(0x03)\r\n
17-03-17 23:27:06.028 -07 000000433 INF: LanePump: Current Position of Pump is: 1920
17-03-17 23:27:06.158 -07 000000433 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 23:27:06.198 -07 000000433 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:27:06.798 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 4.014009,
17-03-17 23:27:07.068 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:27:07.068 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 75. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1214, R2=1269, Total=2483. Warn if over 250 bubbles per interval.
17-03-17 23:27:08.538 -07 000000433 INF: LanePump: Xmit /1Q\r
17-03-17 23:27:08.568 -07 000000433 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:27:08.988 -07 000000433 INF: LanePump: Xmit /1Q\r
17-03-17 23:27:09.018 -07 000000433 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:27:09.018 -07 000000433 INF: LanePump: Waited 2819 ms for pump motion to complete
17-03-17 23:27:09.018 -07 000000433 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 23:27:09.018 -07 000000433 INF: ===================  ===================
17-03-17 23:27:12.068 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:27:12.068 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 75. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1214, R2=1269, Total=2483. Warn if over 250 bubbles per interval.
17-03-17 23:27:12.158 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 3.999021,
17-03-17 23:27:17.068 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:27:17.068 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 75. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1214, R2=1269, Total=2483. Warn if over 250 bubbles per interval.
17-03-17 23:27:17.518 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 3.978563,
17-03-17 23:27:22.068 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:27:22.068 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 75. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1214, R2=1269, Total=2483. Warn if over 250 bubbles per interval.
17-03-17 23:27:22.878 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 3.979922,
17-03-17 23:27:27.068 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:27:27.068 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 75. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1214, R2=1269, Total=2483. Warn if over 250 bubbles per interval.
17-03-17 23:27:28.238 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 4.001704,
17-03-17 23:27:32.068 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:27:32.068 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 75. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1214, R2=1269, Total=2483. Warn if over 250 bubbles per interval.
17-03-17 23:27:33.598 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 4.024884,
17-03-17 23:27:34.788 -07 000000459 INF: WaitCommand(30000) end
17-03-17 23:27:34.788 -07 000000610 INF: =================== Cycle #76, Flow Cell Temp 22° ===================
17-03-17 23:27:34.788 -07 000000610 INF: =================== Cycle #76, Flow Cell Temp 22°, FC temperature to 22° ===================
17-03-17 23:27:34.788 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl]
17-03-17 23:27:34.798 -07 000000459 INF: FPGA: Recv TEC2TEMP 
17-03-17 23:27:34.808 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:27:34.808 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 23:27:34.808 -07 000000623 INF: FPGA: Recv TEC2EN 
17-03-17 23:27:34.818 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:27:34.818 -07 000000610 INF: =================== Cycle #76, Flow Cell Temp 22° ===================
17-03-17 23:27:34.818 -07 000000610 INF: =================== Cycle #76 ===================
17-03-17 23:27:34.818 -07 000000610 INF: =================== Cycle #76, Pumping Reagent PR2 (3) ===================
17-03-17 23:27:34.818 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 23:27:34.818 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:27:34.858 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 23:27:34.858 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 23:27:34.858 -07 000000610 INF: =================== Cycle #76, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 23:27:34.988 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 23:27:35.028 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:27:37.068 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1
17-03-17 23:27:37.068 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 75. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1215, R2=1270, Total=2485. Warn if over 250 bubbles per interval.
17-03-17 23:27:38.158 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:27:38.188 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:27:38.608 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:27:38.638 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:27:38.958 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 4.003063,
17-03-17 23:27:39.058 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:27:39.088 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:27:39.088 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 23:27:39.088 -07 000000610 INF: =================== Cycle #76, Pumping Reagent PR2 (3) ===================
17-03-17 23:27:39.218 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:27:39.248 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 23:27:39.248 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 23:27:39.378 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:27:39.408 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 23:27:39.408 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 23:27:39.408 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 23:27:39.538 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 23:27:39.568 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:27:39.998 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:27:40.028 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:27:40.028 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 23:27:40.028 -07 000000610 INF: =================== Cycle #76 ===================
17-03-17 23:27:41.248 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 23:27:41.248 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start
17-03-17 23:27:41.248 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:27:41.268 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 23:27:41.268 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions.
17-03-17 23:27:41.268 -07 000000610 INF: ReagentValve: Xmit -02\r
17-03-17 23:27:41.418 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 23:27:41.438 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 23:27:41.438 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 23:27:41.488 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:27:41.508 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 23:27:41.508 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 23:27:41.608 -07 000000610 INF: =================== Cycle #76, Pumping Reagent USM (2) ===================
17-03-17 23:27:41.608 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 23:27:41.608 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:27:41.638 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 23:27:41.638 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 23:27:41.638 -07 000000610 INF: =================== Cycle #76, Pumping Reagent USM (2), Aspirating port InputPort ===================
17-03-17 23:27:41.768 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 23:27:41.808 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:27:42.068 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:27:42.068 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 75. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1215, R2=1270, Total=2485. Warn if over 250 bubbles per interval.
17-03-17 23:27:43.248 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:27:43.278 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:27:43.698 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:27:43.728 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:27:43.728 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 23:27:43.728 -07 000000610 INF: =================== Cycle #76, Pumping Reagent USM (2) ===================
17-03-17 23:27:43.858 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:27:43.888 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 23:27:43.888 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 23:27:44.018 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:27:44.048 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 23:27:44.048 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 23:27:44.048 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 23:27:44.178 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 23:27:44.208 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:27:44.318 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 3.985358,
17-03-17 23:27:44.638 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:27:44.668 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:27:44.668 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 23:27:44.668 -07 000000610 INF: =================== Cycle #76 ===================
17-03-17 23:27:45.888 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 23:27:45.888 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 23:27:45.888 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:27:45.908 -07 000000610 INF: ReagentValve: Recv 02\r
17-03-17 23:27:45.908 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions.
17-03-17 23:27:45.908 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 23:27:46.058 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 23:27:46.078 -07 000000610 INF: ReagentValve: Recv 00E3\r
17-03-17 23:27:46.078 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%)
17-03-17 23:27:46.128 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:27:46.148 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 23:27:46.148 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 23:27:46.248 -07 000000610 INF: =================== Cycle #76, Pumping Reagent PR2 (3) ===================
17-03-17 23:27:46.248 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 23:27:46.248 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:27:46.278 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n
17-03-17 23:27:46.278 -07 000000610 INF: LanePump: Current Position of Pump is: 990
17-03-17 23:27:46.278 -07 000000610 INF: =================== Cycle #76, Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 23:27:46.408 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 23:27:46.448 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:27:47.068 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:27:47.068 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 75. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1215, R2=1270, Total=2485. Warn if over 250 bubbles per interval.
17-03-17 23:27:47.318 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:27:47.348 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:27:47.348 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 23:27:47.348 -07 000000610 INF: =================== Cycle #76, Pumping Reagent PR2 (3) ===================
17-03-17 23:27:47.478 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:27:47.508 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 23:27:47.508 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 23:27:47.638 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:27:47.668 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 23:27:47.668 -07 000000610 INF: LanePump: Current Position of Pump is: 1110
17-03-17 23:27:47.668 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 23:27:47.798 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 23:27:47.828 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:27:48.258 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:27:48.288 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:27:48.288 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 23:27:48.288 -07 000000610 INF: =================== Cycle #76 ===================
17-03-17 23:27:48.288 -07 000000438 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 23:27:48.288 -07 000000541 INF: WaitCommand(10000) start
17-03-17 23:27:48.288 -07 000000438 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 23:27:49.508 -07 000000438 INF: AsyncDelayTimer waited 1213ms
17-03-17 23:27:49.508 -07 000000438 INF: LanePump: Xmit /1?\r
17-03-17 23:27:49.538 -07 000000438 INF: LanePump: Recv /0`1110(0x03)\r\n
17-03-17 23:27:49.538 -07 000000438 INF: LanePump: Current Position of Pump is: 1110
17-03-17 23:27:49.668 -07 000000438 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 23:27:49.678 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 4.012614,
17-03-17 23:27:49.708 -07 000000438 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:27:51.238 -07 000000438 INF: LanePump: Xmit /1Q\r
17-03-17 23:27:51.268 -07 000000438 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:27:51.688 -07 000000438 INF: LanePump: Xmit /1Q\r
17-03-17 23:27:51.718 -07 000000438 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:27:51.718 -07 000000438 INF: LanePump: Waited 2009 ms for pump motion to complete
17-03-17 23:27:51.718 -07 000000438 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 23:27:51.718 -07 000000438 INF: ===================  ===================
17-03-17 23:27:52.068 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:27:52.068 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 75. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1215, R2=1270, Total=2485. Warn if over 250 bubbles per interval.
17-03-17 23:27:55.038 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 4.019446,
17-03-17 23:27:57.068 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:27:57.068 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 75. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1215, R2=1270, Total=2485. Warn if over 250 bubbles per interval.
17-03-17 23:27:58.298 -07 000000541 INF: WaitCommand(10000) end
17-03-17 23:27:58.298 -07 000000610 INF: =================== Cycle #76, Imaging ===================
17-03-17 23:27:58.298 -07 000000610 INF: Imaging Cycle 76: ScanTilesCommand Cycle 76 time start.
17-03-17 23:27:58.298 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand
17-03-17 23:27:58.298 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:27:58.328 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 23:27:58.328 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions.
17-03-17 23:27:58.328 -07 000000610 INF: ReagentValve: Xmit -18\r
17-03-17 23:27:58.628 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 23:27:58.648 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 23:27:58.648 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 23:27:58.698 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:27:58.718 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 23:27:58.718 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:27:58.718 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:27:58.718 -07 000000541 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start.
17-03-17 23:27:58.718 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:27:58.718 -07 000000541 INF: FPGA: Xmit EXLED1ON\n [RedLED]
17-03-17 23:27:58.718 -07 000000448 INF: FPGA: Recv EXLED1ON 
17-03-17 23:27:58.728 -07 000000541 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:27:58.728 -07 000000541 INF: FPGA: Xmit EXLED1ADCR\n [RedLED]
17-03-17 23:27:58.728 -07 000000433 INF: FPGA: Recv EXLED1ADCR 23227
17-03-17 23:27:58.738 -07 000000541 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:27:58.738 -07 000000541 INF: RedLED: Using Red data: Photodiode ADC 23227 --> 7.5 mW (old method), or 205.8 mW (new method). Difference = 198.4 mW
17-03-17 23:27:58.738 -07 000000541 INF: FPGA: Xmit EXLED1OFF\n [RedLED]
17-03-17 23:27:58.738 -07 000000576 INF: FPGA: Recv EXLED1OFF 
17-03-17 23:27:58.748 -07 000000541 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:27:58.748 -07 000000541 INF: RedLED: LED was on for 20 ms
17-03-17 23:27:58.748 -07 000000541 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 25 ms.
17-03-17 23:27:58.748 -07 000000541 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start.
17-03-17 23:27:58.748 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:27:58.748 -07 000000541 INF: FPGA: Xmit EXLED2ON\n [GreenLED]
17-03-17 23:27:58.748 -07 000000480 INF: FPGA: Recv EXLED2ON 
17-03-17 23:27:58.758 -07 000000541 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:27:58.758 -07 000000541 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 23:27:58.758 -07 000000576 INF: FPGA: Recv EXLED1ADCR 2100
17-03-17 23:27:58.768 -07 000000541 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:27:58.768 -07 000000541 INF: GreenLED: Using Green data: Photodiode ADC 2100 --> 0.9 mW (old method), or 182.5 mW (new method). Difference = 181.5 mW
17-03-17 23:27:58.768 -07 000000541 INF: FPGA: Xmit EXLED2OFF\n [GreenLED]
17-03-17 23:27:58.768 -07 000000502 INF: FPGA: Recv EXLED2OFF 
17-03-17 23:27:58.778 -07 000000541 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:27:58.778 -07 000000541 INF: GreenLED: LED was on for 19 ms
17-03-17 23:27:58.778 -07 000000541 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 26 ms.
17-03-17 23:27:58.778 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 23:27:58.778 -07 000000459 INF: FPGA: Recv EMCUR 
17-03-17 23:27:58.788 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:27:58.788 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator]
17-03-17 23:27:59.288 -07 000000475 INF: FPGA: Recv EMOUT
17-03-17 23:27:59.288 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall
17-03-17 23:27:59.288 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator]
17-03-17 23:27:59.288 -07 000000576 INF: FPGA: Recv EMCUR 
17-03-17 23:27:59.298 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:27:59.298 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:27:59.298 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.380859375, Z-Position -0.127152289517827. ------
17-03-17 23:27:59.298 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:27:59.298 -07 000000623 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17915 mm
17-03-17 23:27:59.298 -07 000000623 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:27:59.298 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 39135, sync = True, waitForSettling = False)
17-03-17 23:27:59.298 -07 000000480 INF: Z Motor: Moving to -0.179149 mm, started at -0.127152 mm, distance = -52.00 um
17-03-17 23:27:59.298 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 23:27:59.308 -07 000000576 INF: Y Motor: Moving to 59.9126 mm, started at 75.3809 mm, delta = -15.4683 mm
17-03-17 23:27:59.308 -07 000000480 INF: FPGA: Xmit ZDACW 39135\n [Z Motor]
17-03-17 23:27:59.308 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:27:59.308 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:27:59.308 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 23:27:59.318 -07 000000480 INF: FPGA: 'ZDACW 39135' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:27:59.318 -07 000000475 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:27:59.328 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:27:59.328 -07 000000448 INF: FPGA: Recv YRDPOS 154380
17-03-17 23:27:59.338 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:27:59.338 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:27:59.338 -07 000000576 INF: Y Motor: Encoder = 154380 = motor step 120609.4 = 75.3809 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:27:59.338 -07 000000576 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False
17-03-17 23:27:59.338 -07 000000576 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 23:27:59.338 -07 000000561 INF: FPGA: Recv ZDACR 39135
17-03-17 23:27:59.348 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:27:59.348 -07 000000480 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-17 23:27:59.348 -07 000000576 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 23:27:59.518 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:27:59.518 -07 000000475 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 214 ms overall
17-03-17 23:28:00.398 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 4.026244,
17-03-17 23:28:01.028 -07 000000475 INF: FPGA: Recv YMVTO 122703 24776
17-03-17 23:28:01.028 -07 000000576 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1676 ms to get response, and 1695 ms overall
17-03-17 23:28:01.028 -07 000000576 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 23:28:01.028 -07 000000576 INF: Y Motor: To move from 75.381 to 59.913 (-15.468 mm) should take 24749 steps, but required 24776 steps (15.485 mm). Slippage = 0.017 mm (0.00%).
17-03-17 23:28:01.028 -07 000000576 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1695 ms, distance = 15.468 mm, average velocity = 9.126 mm/sec
17-03-17 23:28:02.068 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:28:02.068 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 75. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1215, R2=1270, Total=2485. Warn if over 250 bubbles per interval.
17-03-17 23:28:03.878 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:28:03.878 -07 000000480 INF: FPGA: Recv YRDPOS 122697
17-03-17 23:28:03.888 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:03.888 -07 000000576 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:28:03.908 -07 000000576 INF: Y Motor: After move to 59.912609, error = -0.001965, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:28:03.908 -07 000000576 INF: Y Motor: Position error after settling = -4 encoder counts (-0.002 mm), Delta during settling = -6 counts (-0.003 mm)
17-03-17 23:28:03.908 -07 000000576 INF: Y Motor: Moved to 59.9106 after 4606 ms
17-03-17 23:28:03.918 -07 000000623 INF: Z Motor: EndOfMoveAbsStepped: target = -0.179149 mm (DAC = 39135)
17-03-17 23:28:03.918 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:03.918 -07 000000480 INF: FPGA: Recv ZSGSRD 37172
17-03-17 23:28:03.928 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:03.928 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:03.928 -07 000000480 INF: FPGA: Recv ZSGSRD 37169
17-03-17 23:28:03.938 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:03.938 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:03.938 -07 000000480 INF: FPGA: Recv ZSGSRD 37173
17-03-17 23:28:03.948 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:03.948 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:03.948 -07 000000480 INF: FPGA: Recv ZSGSRD 37181
17-03-17 23:28:03.958 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:03.958 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:03.958 -07 000000480 INF: FPGA: Recv ZSGSRD 37176
17-03-17 23:28:03.968 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:03.968 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:03.968 -07 000000480 INF: FPGA: Recv ZSGSRD 37173
17-03-17 23:28:03.978 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:03.978 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:03.978 -07 000000475 INF: FPGA: Recv ZSGSRD 37175
17-03-17 23:28:03.988 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:03.988 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:03.988 -07 000000541 INF: FPGA: Recv ZSGSRD 37179
17-03-17 23:28:03.998 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:03.998 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:03.998 -07 000000541 INF: FPGA: Recv ZSGSRD 37179
17-03-17 23:28:04.008 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:04.008 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:04.008 -07 000000541 INF: FPGA: Recv ZSGSRD 37180
17-03-17 23:28:04.018 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:04.018 -07 000000623 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:28:04.018 -07 000000541 INF: FPGA: Recv ZPIEZORD 33459
17-03-17 23:28:04.028 -07 000000623 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:04.028 -07 000000623 INF: Z Motor: Piezo is near 51.5 V (nominally 0 to 100 V), expect near 59.7 V, since DAC is at 5.972 V. Piezo Error = -8.2 V.
17-03-17 23:28:04.028 -07 000000623 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.1 um, Read 10 ADC samples: Avg = 37176 (-178.3 uncal um), Error = 0.9 uncal um, Median = 37176 (-178.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 37169 (-178.2 uncal um), Max = 37181 (-178.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 23:28:04.028 -07 000000623 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37176, posNoise = 5, negNoise = 7
17-03-17 23:28:04.028 -07 000000623 INF: Z Motor: After move to -0.179149, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:28:04.028 -07 000000623 INF: Z Motor: Settle wait time = 4610 ms, measure time = 110 ms (allowed 150 ms), total time = 4720 ms
17-03-17 23:28:04.028 -07 000000623 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 23:28:04.068 -07 000000623 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4763 ms
17-03-17 23:28:04.068 -07 000000623 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:28:04.068 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:28:04.068 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:28:04.068 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:28:04.068 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:28:04.068 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:28:04.068 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:28:04.068 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:28:04.068 -07 000000433 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 23:28:04.088 -07 000000433 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 20 ms.
17-03-17 23:28:04.088 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:28:04.098 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:28:04.098 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:28:04.098 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 23:28:04.098 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 31 ms.
17-03-17 23:28:04.108 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:28:04.158 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 43
17-03-17 23:28:04.358 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 243
17-03-17 23:28:04.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 243
17-03-17 23:28:04.358 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:28:04.358 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1145779136, 0x0, 559484976) start.
17-03-17 23:28:04.388 -07 000000438 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:28:04.388 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-17 23:28:04.388 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 3 ms to send, 278 ms to get response, and 286 ms overall
17-03-17 23:28:04.488 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1145779136, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 23:28:04.488 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:28:04.488 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:28:04.488 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 23:28:04.588 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:28:04.588 -07 000000623 INF: Image SNR check: start
17-03-17 23:28:04.588 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:28:04.598 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:28:04.598 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:28:04.598 -07 000000623 INF: Image SNR check: pass  [peak (Max-Min)=56.01]
17-03-17 23:28:04.598 -07 000000623 INF: Autofocus start
17-03-17 23:28:04.598 -07 000000623 INF: MeasureProfile start
17-03-17 23:28:04.618 -07 000000623 INF: MeasureProfile done
17-03-17 23:28:04.618 -07 000000623 INF: X=0  Z correction [um]=-0.0713522
17-03-17 23:28:04.618 -07 000000623 INF: Autofocus finished
17-03-17 23:28:04.798 -07 000000480 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:28:04.798 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:28:04.798 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91064453125, Z-position -0.17914986259324. ----------
17-03-17 23:28:04.798 -07 000000610 INF: Cycle	76	Tile	1	Exposure Settings		A	476	G	229	T	229	C	476
17-03-17 23:28:04.808 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37632, sync = True, waitForSettling = True)
17-03-17 23:28:04.808 -07 000000610 INF: Z Motor: Moving to -0.172268 mm, started at -0.179150 mm, distance = 6.88 um
17-03-17 23:28:04.808 -07 000000610 INF: FPGA: Xmit ZDACW 37632\n [Z Motor]
17-03-17 23:28:04.808 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 23:28:04.818 -07 000000610 INF: FPGA: 'ZDACW 37632' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:04.818 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:28:04.818 -07 000000433 INF: FPGA: Recv ZDACR 37632
17-03-17 23:28:04.828 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:04.828 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:28:04.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:04.978 -07 000000448 INF: FPGA: Recv ZSGSRD 36110
17-03-17 23:28:04.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:28:04.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:04.988 -07 000000480 INF: FPGA: Recv ZSGSRD 36109
17-03-17 23:28:04.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:04.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:04.998 -07 000000561 INF: FPGA: Recv ZSGSRD 36109
17-03-17 23:28:05.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:05.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:05.008 -07 000000480 INF: FPGA: Recv ZSGSRD 36109
17-03-17 23:28:05.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:05.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:05.018 -07 000000561 INF: FPGA: Recv ZSGSRD 36104
17-03-17 23:28:05.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:05.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:05.028 -07 000000623 INF: FPGA: Recv ZSGSRD 36108
17-03-17 23:28:05.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:05.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:05.038 -07 000000459 INF: FPGA: Recv ZSGSRD 36103
17-03-17 23:28:05.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:05.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:05.048 -07 000000623 INF: FPGA: Recv ZSGSRD 36111
17-03-17 23:28:05.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:05.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:05.058 -07 000000459 INF: FPGA: Recv ZSGSRD 36108
17-03-17 23:28:05.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:05.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:05.068 -07 000000623 INF: FPGA: Recv ZSGSRD 36101
17-03-17 23:28:05.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:05.078 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:28:05.078 -07 000000433 INF: FPGA: Recv ZPIEZORD 32047
17-03-17 23:28:05.088 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:05.088 -07 000000610 INF: Z Motor: Piezo is near 48.5 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.742 V. Piezo Error = -9.0 V.
17-03-17 23:28:05.088 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.3 um, Read 10 ADC samples: Avg = 36107 (-171.4 uncal um), Error = 0.9 uncal um, Median = 36108 (-171.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36101 (-171.4 uncal um), Max = 36111 (-171.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:28:05.088 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36107, posNoise = 4, negNoise = 6
17-03-17 23:28:05.088 -07 000000610 INF: Z Motor: After move to -0.172268, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:28:05.088 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 23:28:05.088 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:28:05.088 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:28:05.088 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:28:05.088 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:28:05.088 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:28:05.088 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:28:05.088 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:28:05.088 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:28:05.088 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:28:05.088 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:28:05.088 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:28:05.088 -07 000000623 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 23:28:05.088 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 23:28:05.088 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:28:05.108 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-17 23:28:05.108 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 23:28:05.108 -07 000000623 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 20 ms.
17-03-17 23:28:05.108 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:28:05.118 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 23:28:05.118 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:28:05.118 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 23:28:05.118 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 33 ms.
17-03-17 23:28:05.128 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 476 476 229 229 37809 150\n [Camera]
17-03-17 23:28:05.328 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:28:05.758 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 4.004458,
17-03-17 23:28:05.798 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 668
17-03-17 23:28:05.798 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 668
17-03-17 23:28:05.798 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:28:05.798 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 668
17-03-17 23:28:05.808 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 668
17-03-17 23:28:05.808 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:28:05.928 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:28:05.928 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 23:28:05.928 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:28:05.928 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 23:28:05.988 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37809 861
17-03-17 23:28:06.138 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1011
17-03-17 23:28:06.328 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 23:28:06.328 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 23:28:06.328 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:28:06.328 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 23:28:06.328 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 23:28:06.328 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:28:06.328 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:28:06.328 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:28:06.328 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 530 ms.
17-03-17 23:28:06.338 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 533 ms.
17-03-17 23:28:06.368 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1240
17-03-17 23:28:06.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1240
17-03-17 23:28:06.378 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:28:06.378 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1240
17-03-17 23:28:06.378 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1240
17-03-17 23:28:06.378 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:28:06.378 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:28:06.378 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 23:28:06.378 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:28:06.378 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 23:28:06.568 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1433
17-03-17 23:28:06.568 -07 000000623 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:28:06.568 -07 000000610 INF: FPGA: 'CAMDBLSNAP 476 476 229 229 37809 150' command took 2 ms to send, 1430 ms to get response, and 1440 ms overall
17-03-17 23:28:06.568 -07 000000610 INF: Skipping AutoFocus in Tile 2: adopting Best-Z from the cache: -0.172178
17-03-17 23:28:06.568 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17218 mm
17-03-17 23:28:06.568 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:28:06.568 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 23:28:06.568 -07 000000475 INF: Z Motor: Entering MoveAbsStepped (DAC = 37612, sync = True, waitForSettling = False)
17-03-17 23:28:06.568 -07 000000475 INF: Z Motor: Moving to -0.172177 mm, started at -0.172282 mm, distance = 0.11 um
17-03-17 23:28:06.568 -07 000000475 INF: FPGA: Xmit ZDACW 37612\n [Z Motor]
17-03-17 23:28:06.568 -07 000000459 INF: Y Motor: Moving to 60.7426 mm, started at 59.9106 mm, delta = 0.8320 mm
17-03-17 23:28:06.568 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 23:28:06.578 -07 000000475 INF: FPGA: 'ZDACW 37612' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:28:06.578 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:28:06.578 -07 000000448 INF: FPGA: Recv YRDPOS 122697
17-03-17 23:28:06.588 -07 000000459 INF: FPGA: 'YRDPOS' command took 3 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 23:28:06.588 -07 000000459 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:28:06.588 -07 000000459 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:28:06.588 -07 000000459 INF: Y Motor: Moving 1331 steps2
17-03-17 23:28:06.588 -07 000000475 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:28:06.588 -07 000000433 INF: FPGA: Recv ZDACR 37612
17-03-17 23:28:06.598 -07 000000475 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 23:28:06.598 -07 000000475 INF: Z Motor: MoveAbsStepped took 24 ms (did NOT wait for settling yet))
17-03-17 23:28:06.598 -07 000000459 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:28:06.778 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 399 ms.
17-03-17 23:28:06.778 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 23:28:06.778 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:28:06.788 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:28:06.788 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms.
17-03-17 23:28:06.788 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 403 ms.
17-03-17 23:28:06.788 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 23:28:06.788 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:28:06.788 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:28:06.798 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-17 23:28:06.968 -07 000000409 INF: FPGA: Recv YMVTILE
17-03-17 23:28:06.968 -07 000000459 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 23:28:07.008 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:28:07.008 -07 000000475 INF: FPGA: Recv YRDPOS 124380
17-03-17 23:28:07.018 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:28:07.018 -07 000000459 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:28:07.018 -07 000000459 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-17 23:28:07.018 -07 000000459 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.832 mm, average velocity = 2.144 mm/sec
17-03-17 23:28:07.068 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:28:07.068 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 75. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1215, R2=1270, Total=2485. Warn if over 250 bubbles per interval.
17-03-17 23:28:07.968 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:28:07.968 -07 000000561 INF: FPGA: Recv YRDPOS 124380
17-03-17 23:28:07.978 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:28:07.978 -07 000000459 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:28:07.998 -07 000000459 INF: Y Motor: After move to 60.742607, error = -0.010185, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:28:07.998 -07 000000459 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:28:07.998 -07 000000459 INF: Y Motor: Moved to 60.7324 after 1431 ms (table move)
17-03-17 23:28:07.998 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172177 mm (DAC = 37612)
17-03-17 23:28:07.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:08.008 -07 000000433 INF: FPGA: Recv ZSGSRD 36090
17-03-17 23:28:08.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 23:28:08.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:08.008 -07 000000438 INF: FPGA: Recv ZSGSRD 36097
17-03-17 23:28:08.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:28:08.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:08.018 -07 000000561 INF: FPGA: Recv ZSGSRD 36094
17-03-17 23:28:08.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:08.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:08.028 -07 000000459 INF: FPGA: Recv ZSGSRD 36094
17-03-17 23:28:08.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:08.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:08.038 -07 000000480 INF: FPGA: Recv ZSGSRD 36099
17-03-17 23:28:08.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:08.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:08.048 -07 000000475 INF: FPGA: Recv ZSGSRD 36094
17-03-17 23:28:08.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:08.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:08.058 -07 000000576 INF: FPGA: Recv ZSGSRD 36091
17-03-17 23:28:08.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:08.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:08.068 -07 000000486 INF: FPGA: Recv ZSGSRD 36093
17-03-17 23:28:08.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:08.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:08.078 -07 000000502 INF: FPGA: Recv ZSGSRD 36088
17-03-17 23:28:08.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:08.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:08.088 -07 000000502 INF: FPGA: Recv ZSGSRD 36090
17-03-17 23:28:08.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:08.098 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:28:08.098 -07 000000627 INF: FPGA: Recv ZPIEZORD 32039
17-03-17 23:28:08.108 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:08.108 -07 000000610 INF: Z Motor: Piezo is near 48.4 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.739 V. Piezo Error = -8.9 V.
17-03-17 23:28:08.108 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.2 um, Read 10 ADC samples: Avg = 36093 (-171.3 uncal um), Error = 0.9 uncal um, Median = 36094 (-171.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36088 (-171.3 uncal um), Max = 36099 (-171.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:28:08.108 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36093, posNoise = 6, negNoise = 5
17-03-17 23:28:08.108 -07 000000610 INF: Z Motor: After move to -0.172177, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:28:08.108 -07 000000610 INF: Z Motor: Settle wait time = 1434 ms, measure time = 101 ms (allowed 150 ms), total time = 1535 ms
17-03-17 23:28:08.108 -07 000000610 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 23:28:08.158 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1586 ms
17-03-17 23:28:08.158 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:28:08.158 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.732421875, Z-position -0.172192440843713. ----------
17-03-17 23:28:08.158 -07 000000610 INF: Cycle	76	Tile	2	Exposure Settings		A	476	G	229	T	229	C	476
17-03-17 23:28:08.158 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37436, sync = True, waitForSettling = True)
17-03-17 23:28:08.158 -07 000000610 INF: Z Motor: Moving to -0.171371 mm, started at -0.172192 mm, distance = 0.82 um
17-03-17 23:28:08.158 -07 000000610 INF: FPGA: Xmit ZDACW 37436\n [Z Motor]
17-03-17 23:28:08.158 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 23:28:08.168 -07 000000610 INF: FPGA: 'ZDACW 37436' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:28:08.168 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:28:08.168 -07 000000541 INF: FPGA: Recv ZDACR 37436
17-03-17 23:28:08.178 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:08.178 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:28:08.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:08.328 -07 000000486 INF: FPGA: Recv ZSGSRD 35965
17-03-17 23:28:08.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:28:08.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:08.338 -07 000000627 INF: FPGA: Recv ZSGSRD 35969
17-03-17 23:28:08.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:08.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:08.348 -07 000000409 INF: FPGA: Recv ZSGSRD 35966
17-03-17 23:28:08.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:08.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:08.358 -07 000000576 INF: FPGA: Recv ZSGSRD 35969
17-03-17 23:28:08.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:08.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:08.368 -07 000000618 INF: FPGA: Recv ZSGSRD 35968
17-03-17 23:28:08.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:08.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:08.378 -07 000000438 INF: FPGA: Recv ZSGSRD 35960
17-03-17 23:28:08.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:08.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:08.388 -07 000000623 INF: FPGA: Recv ZSGSRD 35968
17-03-17 23:28:08.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:08.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:08.398 -07 000000576 INF: FPGA: Recv ZSGSRD 35968
17-03-17 23:28:08.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:08.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:08.408 -07 000000480 INF: FPGA: Recv ZSGSRD 35968
17-03-17 23:28:08.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:08.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:08.418 -07 000000438 INF: FPGA: Recv ZSGSRD 35964
17-03-17 23:28:08.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:08.428 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:28:08.428 -07 000000448 INF: FPGA: Recv ZPIEZORD 31859
17-03-17 23:28:08.438 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:08.438 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.712 V. Piezo Error = -9.1 V.
17-03-17 23:28:08.438 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.4 um, Read 10 ADC samples: Avg = 35966 (-170.5 uncal um), Error = 0.9 uncal um, Median = 35968 (-170.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35960 (-170.5 uncal um), Max = 35969 (-170.5 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:28:08.438 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35966, posNoise = 3, negNoise = 6
17-03-17 23:28:08.438 -07 000000610 INF: Z Motor: After move to -0.171371, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:28:08.438 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 23:28:08.438 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:28:08.438 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:28:08.438 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:28:08.438 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:28:08.438 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:28:08.438 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:28:08.438 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:28:08.438 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:28:08.438 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 23:28:08.438 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:28:08.438 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:28:08.438 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:28:08.448 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 23:28:08.448 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:28:08.448 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:28:08.448 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:28:08.458 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 23:28:08.458 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 24 ms.
17-03-17 23:28:08.458 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 23:28:08.458 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 24 ms.
17-03-17 23:28:08.468 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 476 476 229 229 37612 150\n [Camera]
17-03-17 23:28:08.668 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:28:09.138 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 668
17-03-17 23:28:09.138 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 668
17-03-17 23:28:09.138 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:28:09.138 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:28:09.138 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1160455216, 0x0, 391868352) start.
17-03-17 23:28:09.148 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 668
17-03-17 23:28:09.148 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 668
17-03-17 23:28:09.148 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:28:09.148 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:28:09.148 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 23:28:09.338 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37612 861
17-03-17 23:28:09.488 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1011
17-03-17 23:28:09.538 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1160455216, 0x0, 391868352) end. Duration was 400 ms.
17-03-17 23:28:09.538 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms.
17-03-17 23:28:09.538 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:28:09.548 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 400 ms.
17-03-17 23:28:09.548 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 23:28:09.548 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:28:09.548 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:28:09.548 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 23:28:09.548 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:28:09.558 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 23:28:09.708 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1240
17-03-17 23:28:09.718 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1240
17-03-17 23:28:09.718 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:28:09.718 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:28:09.718 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 23:28:09.718 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1240
17-03-17 23:28:09.718 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1240
17-03-17 23:28:09.718 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:28:09.838 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:28:09.838 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 23:28:09.908 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1433
17-03-17 23:28:09.908 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:28:09.908 -07 000000610 INF: FPGA: 'CAMDBLSNAP 476 476 229 229 37612 150' command took 2 ms to send, 1431 ms to get response, and 1440 ms overall
17-03-17 23:28:09.908 -07 000000610 INF: Skipping AutoFocus in Tile 3: adopting Best-Z from the cache: -0.172058
17-03-17 23:28:09.908 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17206 mm
17-03-17 23:28:09.908 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:28:09.908 -07 000000475 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 23:28:09.908 -07 000000475 INF: Y Motor: Moving to 61.5726 mm, started at 60.7324 mm, delta = 0.8402 mm
17-03-17 23:28:09.908 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:28:09.908 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 37586, sync = True, waitForSettling = False)
17-03-17 23:28:09.908 -07 000000480 INF: Z Motor: Moving to -0.172058 mm, started at -0.171377 mm, distance = -0.68 um
17-03-17 23:28:09.908 -07 000000502 INF: FPGA: Recv YRDPOS 124380
17-03-17 23:28:09.918 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:28:09.918 -07 000000480 INF: FPGA: Xmit ZDACW 37586\n [Z Motor]
17-03-17 23:28:09.918 -07 000000475 INF: Y Motor: Encoder = 124380 = motor step 97171.9 = 60.7324 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:28:09.918 -07 000000475 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:28:09.918 -07 000000475 INF: Y Motor: Moving 1344 steps-21
17-03-17 23:28:09.918 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 23:28:09.928 -07 000000480 INF: FPGA: 'ZDACW 37586' command took 0 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 23:28:09.928 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:28:09.928 -07 000000438 INF: FPGA: Recv ZDACR 37586
17-03-17 23:28:09.938 -07 000000475 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:28:09.938 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:09.938 -07 000000480 INF: Z Motor: MoveAbsStepped took 23 ms (did NOT wait for settling yet))
17-03-17 23:28:10.118 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 402 ms.
17-03-17 23:28:10.118 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 23:28:10.118 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:28:10.118 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:28:10.118 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 23:28:10.238 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 23:28:10.238 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 23:28:10.238 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:28:10.238 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 23:28:10.248 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 528 ms.
17-03-17 23:28:10.308 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-17 23:28:10.308 -07 000000475 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 23:28:10.348 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:28:10.358 -07 000000433 INF: FPGA: Recv YRDPOS 126081
17-03-17 23:28:10.358 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 23:28:10.358 -07 000000475 INF: Y Motor: Encoder = 126081 = motor step 98500.8 = 61.5630 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:28:10.358 -07 000000475 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 23:28:10.358 -07 000000475 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.116 mm/sec
17-03-17 23:28:11.118 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 4.019446,
17-03-17 23:28:11.308 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:28:11.308 -07 000000576 INF: FPGA: Recv YRDPOS 126082
17-03-17 23:28:11.318 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:28:11.318 -07 000000475 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:28:11.338 -07 000000475 INF: Y Motor: After move to 61.572609, error = -0.009132, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:28:11.338 -07 000000475 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 23:28:11.338 -07 000000475 INF: Y Motor: Moved to 61.5635 after 1430 ms (table move)
17-03-17 23:28:11.338 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172058 mm (DAC = 37586)
17-03-17 23:28:11.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:11.348 -07 000000459 INF: FPGA: Recv ZSGSRD 36062
17-03-17 23:28:11.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 23:28:11.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:11.348 -07 000000448 INF: FPGA: Recv ZSGSRD 36083
17-03-17 23:28:11.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:28:11.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:11.358 -07 000000576 INF: FPGA: Recv ZSGSRD 36066
17-03-17 23:28:11.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:11.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:11.368 -07 000000486 INF: FPGA: Recv ZSGSRD 36067
17-03-17 23:28:11.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:11.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:11.378 -07 000000459 INF: FPGA: Recv ZSGSRD 36081
17-03-17 23:28:11.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:11.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:11.388 -07 000000541 INF: FPGA: Recv ZSGSRD 36077
17-03-17 23:28:11.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:11.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:11.398 -07 000000561 INF: FPGA: Recv ZSGSRD 36074
17-03-17 23:28:11.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:11.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:11.408 -07 000000475 INF: FPGA: Recv ZSGSRD 36081
17-03-17 23:28:11.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:11.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:11.418 -07 000000480 INF: FPGA: Recv ZSGSRD 36072
17-03-17 23:28:11.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:11.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:11.428 -07 000000576 INF: FPGA: Recv ZSGSRD 36065
17-03-17 23:28:11.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:11.438 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:28:11.438 -07 000000433 INF: FPGA: Recv ZPIEZORD 32028
17-03-17 23:28:11.448 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:11.448 -07 000000610 INF: Z Motor: Piezo is near 48.4 V (nominally 0 to 100 V), expect near 57.4 V, since DAC is at 5.735 V. Piezo Error = -8.9 V.
17-03-17 23:28:11.448 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.1 um, Read 10 ADC samples: Avg = 36073 (-171.2 uncal um), Error = 0.9 uncal um, Median = 36073 (-171.2 uncal um), StdDev = 8 (0.1 uncal um), Range = 21 (0.1 uncal um), Min = 36062 (-171.1 uncal um), Max = 36083 (-171.2 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 23:28:11.448 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36073, posNoise = 10, negNoise = 11
17-03-17 23:28:11.448 -07 000000610 INF: Z Motor: After move to -0.172058, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:28:11.448 -07 000000610 INF: Z Motor: Settle wait time = 1432 ms, measure time = 101 ms (allowed 150 ms), total time = 1533 ms
17-03-17 23:28:11.448 -07 000000610 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 23:28:11.498 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1585 ms
17-03-17 23:28:11.498 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:28:11.498 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.5634765625, Z-position -0.172063956600878. ----------
17-03-17 23:28:11.498 -07 000000610 INF: Cycle	76	Tile	3	Exposure Settings		A	476	G	229	T	229	C	476
17-03-17 23:28:11.498 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37409, sync = True, waitForSettling = True)
17-03-17 23:28:11.498 -07 000000610 INF: Z Motor: Moving to -0.171247 mm, started at -0.172064 mm, distance = 0.82 um
17-03-17 23:28:11.498 -07 000000610 INF: FPGA: Xmit ZDACW 37409\n [Z Motor]
17-03-17 23:28:11.498 -07 000000409 INF: FPGA: Recv ZDACW
17-03-17 23:28:11.508 -07 000000610 INF: FPGA: 'ZDACW 37409' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:28:11.508 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:28:11.508 -07 000000512 INF: FPGA: Recv ZDACR 37409
17-03-17 23:28:11.518 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:11.518 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:28:11.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:11.668 -07 000000627 INF: FPGA: Recv ZSGSRD 35945
17-03-17 23:28:11.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:28:11.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:11.678 -07 000000448 INF: FPGA: Recv ZSGSRD 35948
17-03-17 23:28:11.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:11.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:11.688 -07 000000433 INF: FPGA: Recv ZSGSRD 35946
17-03-17 23:28:11.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:11.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:11.698 -07 000000409 INF: FPGA: Recv ZSGSRD 35945
17-03-17 23:28:11.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:11.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:11.708 -07 000000627 INF: FPGA: Recv ZSGSRD 35949
17-03-17 23:28:11.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:11.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:11.718 -07 000000541 INF: FPGA: Recv ZSGSRD 35948
17-03-17 23:28:11.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:11.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:11.728 -07 000000475 INF: FPGA: Recv ZSGSRD 35951
17-03-17 23:28:11.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:11.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:11.738 -07 000000623 INF: FPGA: Recv ZSGSRD 35947
17-03-17 23:28:11.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:11.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:11.748 -07 000000486 INF: FPGA: Recv ZSGSRD 35950
17-03-17 23:28:11.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:11.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:11.758 -07 000000576 INF: FPGA: Recv ZSGSRD 35946
17-03-17 23:28:11.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:11.768 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:28:11.768 -07 000000480 INF: FPGA: Recv ZPIEZORD 31869
17-03-17 23:28:11.778 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:11.778 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 57.1 V, since DAC is at 5.708 V. Piezo Error = -9.0 V.
17-03-17 23:28:11.778 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.2 um, Read 10 ADC samples: Avg = 35948 (-170.4 uncal um), Error = 0.9 uncal um, Median = 35948 (-170.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35945 (-170.4 uncal um), Max = 35951 (-170.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 23:28:11.778 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35948, posNoise = 3, negNoise = 3
17-03-17 23:28:11.778 -07 000000610 INF: Z Motor: After move to -0.171247, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:28:11.778 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 23:28:11.778 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:28:11.778 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:28:11.778 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:28:11.778 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:28:11.778 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:28:11.778 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:28:11.778 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:28:11.778 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:28:11.778 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:28:11.778 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:28:11.778 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 23:28:11.778 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:28:11.788 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:28:11.788 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:28:11.788 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:28:11.788 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:28:11.798 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 23:28:11.798 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 23:28:11.798 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 23:28:11.798 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:28:11.808 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 476 476 229 229 37586 150\n [Camera]
17-03-17 23:28:11.998 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:28:12.068 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:28:12.068 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 75. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1215, R2=1270, Total=2485. Warn if over 250 bubbles per interval.
17-03-17 23:28:12.478 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 668
17-03-17 23:28:12.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 668
17-03-17 23:28:12.478 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:28:12.478 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:28:12.478 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 23:28:12.478 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 668
17-03-17 23:28:12.478 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 668
17-03-17 23:28:12.488 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:28:12.488 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:28:12.488 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1145648008, 0x0, 418435064) start.
17-03-17 23:28:12.668 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37586 861
17-03-17 23:28:12.828 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1013
17-03-17 23:28:12.868 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 392 ms.
17-03-17 23:28:12.868 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 23:28:12.868 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:28:12.878 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1145648008, 0x0, 418435064) end. Duration was 390 ms.
17-03-17 23:28:12.878 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 23:28:12.878 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:28:12.878 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:28:12.878 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 23:28:12.878 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:28:12.888 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 23:28:13.048 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1240
17-03-17 23:28:13.048 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1240
17-03-17 23:28:13.048 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:28:13.048 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:28:13.048 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 23:28:13.058 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1240
17-03-17 23:28:13.058 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1240
17-03-17 23:28:13.058 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:28:13.058 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:28:13.058 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 23:28:13.238 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 1432
17-03-17 23:28:13.238 -07 000000541 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:28:13.248 -07 000000610 INF: FPGA: 'CAMDBLSNAP 476 476 229 229 37586 150' command took 2 ms to send, 1429 ms to get response, and 1439 ms overall
17-03-17 23:28:13.248 -07 000000610 INF: Skipping AutoFocus in Tile 4: adopting Best-Z from the cache: -0.171563
17-03-17 23:28:13.248 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17156 mm
17-03-17 23:28:13.248 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:28:13.248 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 23:28:13.248 -07 000000512 INF: Y Motor: Moving to 62.4026 mm, started at 61.5635 mm, delta = 0.8391 mm
17-03-17 23:28:13.248 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:28:13.248 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 37478, sync = True, waitForSettling = False)
17-03-17 23:28:13.248 -07 000000502 INF: Z Motor: Moving to -0.171563 mm, started at -0.171261 mm, distance = -0.30 um
17-03-17 23:28:13.248 -07 000000541 INF: FPGA: Recv YRDPOS 126082
17-03-17 23:28:13.258 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:28:13.258 -07 000000512 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:28:13.258 -07 000000512 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:28:13.258 -07 000000512 INF: Y Motor: Moving 1343 steps-20
17-03-17 23:28:13.258 -07 000000502 INF: FPGA: Xmit ZDACW 37478\n [Z Motor]
17-03-17 23:28:13.258 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 23:28:13.268 -07 000000502 INF: FPGA: 'ZDACW 37478' command took 2 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 23:28:13.268 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:28:13.268 -07 000000459 INF: FPGA: Recv ZDACR 37478
17-03-17 23:28:13.278 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:28:13.278 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:13.278 -07 000000502 INF: Z Motor: MoveAbsStepped took 25 ms (did NOT wait for settling yet))
17-03-17 23:28:13.428 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 23:28:13.428 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 23:28:13.428 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:28:13.438 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:28:13.438 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 23:28:13.438 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 23:28:13.438 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 23:28:13.438 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:28:13.438 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:28:13.448 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 23:28:13.648 -07 000000576 INF: FPGA: Recv YMVTILE
17-03-17 23:28:13.648 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 395 ms overall
17-03-17 23:28:13.698 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:28:13.698 -07 000000561 INF: FPGA: Recv YRDPOS 127784
17-03-17 23:28:13.708 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:28:13.708 -07 000000512 INF: Y Motor: Encoder = 127784 = motor step 99831.3 = 62.3945 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:28:13.708 -07 000000512 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 23:28:13.708 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.114 mm/sec
17-03-17 23:28:14.658 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:28:14.658 -07 000000486 INF: FPGA: Recv YRDPOS 127785
17-03-17 23:28:14.668 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:28:14.668 -07 000000512 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:28:14.688 -07 000000512 INF: Y Motor: After move to 62.402607, error = -0.007587, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:28:14.688 -07 000000512 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 23:28:14.688 -07 000000512 INF: Y Motor: Moved to 62.3950 after 1441 ms (table move)
17-03-17 23:28:14.688 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171563 mm (DAC = 37478)
17-03-17 23:28:14.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:14.698 -07 000000438 INF: FPGA: Recv ZSGSRD 36001
17-03-17 23:28:14.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 23:28:14.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:14.698 -07 000000459 INF: FPGA: Recv ZSGSRD 35996
17-03-17 23:28:14.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:28:14.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:14.708 -07 000000541 INF: FPGA: Recv ZSGSRD 36001
17-03-17 23:28:14.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:14.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:14.718 -07 000000512 INF: FPGA: Recv ZSGSRD 36003
17-03-17 23:28:14.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:14.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:14.728 -07 000000561 INF: FPGA: Recv ZSGSRD 35999
17-03-17 23:28:14.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:14.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:14.738 -07 000000627 INF: FPGA: Recv ZSGSRD 36002
17-03-17 23:28:14.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:14.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:14.748 -07 000000448 INF: FPGA: Recv ZSGSRD 35991
17-03-17 23:28:14.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:14.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:14.758 -07 000000480 INF: FPGA: Recv ZSGSRD 35993
17-03-17 23:28:14.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:14.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:14.768 -07 000000561 INF: FPGA: Recv ZSGSRD 35992
17-03-17 23:28:14.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:14.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:14.778 -07 000000627 INF: FPGA: Recv ZSGSRD 36001
17-03-17 23:28:14.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:14.788 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:28:14.788 -07 000000486 INF: FPGA: Recv ZPIEZORD 31983
17-03-17 23:28:14.798 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:14.798 -07 000000610 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.719 V. Piezo Error = -8.9 V.
17-03-17 23:28:14.798 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.6 um, Read 10 ADC samples: Avg = 35998 (-170.7 uncal um), Error = 0.9 uncal um, Median = 36000 (-170.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35991 (-170.7 uncal um), Max = 36003 (-170.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 23:28:14.798 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35998, posNoise = 5, negNoise = 7
17-03-17 23:28:14.798 -07 000000610 INF: Z Motor: After move to -0.171563, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:28:14.798 -07 000000610 INF: Z Motor: Settle wait time = 1443 ms, measure time = 104 ms (allowed 150 ms), total time = 1547 ms
17-03-17 23:28:14.798 -07 000000610 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 23:28:14.848 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1597 ms
17-03-17 23:28:14.848 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:28:14.848 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.39501953125, Z-position -0.171582140690246. ----------
17-03-17 23:28:14.848 -07 000000610 INF: Cycle	76	Tile	4	Exposure Settings		A	476	G	229	T	229	C	476
17-03-17 23:28:14.848 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37301, sync = True, waitForSettling = True)
17-03-17 23:28:14.848 -07 000000610 INF: Z Motor: Moving to -0.170753 mm, started at -0.171582 mm, distance = 0.83 um
17-03-17 23:28:14.848 -07 000000610 INF: FPGA: Xmit ZDACW 37301\n [Z Motor]
17-03-17 23:28:14.848 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 23:28:14.858 -07 000000610 INF: FPGA: 'ZDACW 37301' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:28:14.858 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:28:14.858 -07 000000475 INF: FPGA: Recv ZDACR 37301
17-03-17 23:28:14.868 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:14.868 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:28:15.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:15.018 -07 000000502 INF: FPGA: Recv ZSGSRD 35874
17-03-17 23:28:15.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:15.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:15.028 -07 000000480 INF: FPGA: Recv ZSGSRD 35878
17-03-17 23:28:15.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:15.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:15.038 -07 000000627 INF: FPGA: Recv ZSGSRD 35871
17-03-17 23:28:15.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:15.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:15.048 -07 000000618 INF: FPGA: Recv ZSGSRD 35863
17-03-17 23:28:15.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:15.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:15.058 -07 000000486 INF: FPGA: Recv ZSGSRD 35869
17-03-17 23:28:15.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:15.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:15.068 -07 000000561 INF: FPGA: Recv ZSGSRD 35869
17-03-17 23:28:15.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:15.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:15.078 -07 000000541 INF: FPGA: Recv ZSGSRD 35867
17-03-17 23:28:15.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:15.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:15.088 -07 000000618 INF: FPGA: Recv ZSGSRD 35867
17-03-17 23:28:15.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:15.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:15.098 -07 000000459 INF: FPGA: Recv ZSGSRD 35871
17-03-17 23:28:15.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:15.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:15.108 -07 000000480 INF: FPGA: Recv ZSGSRD 35878
17-03-17 23:28:15.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:15.118 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:28:15.118 -07 000000541 INF: FPGA: Recv ZPIEZORD 31765
17-03-17 23:28:15.128 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:15.128 -07 000000610 INF: Z Motor: Piezo is near 47.9 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.692 V. Piezo Error = -9.1 V.
17-03-17 23:28:15.128 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.8 um, Read 10 ADC samples: Avg = 35871 (-169.9 uncal um), Error = 0.9 uncal um, Median = 35870 (-169.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35863 (-169.8 uncal um), Max = 35878 (-169.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 23:28:15.128 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35871, posNoise = 7, negNoise = 8
17-03-17 23:28:15.128 -07 000000610 INF: Z Motor: After move to -0.170753, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:28:15.128 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 23:28:15.128 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:28:15.128 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:28:15.128 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:28:15.128 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:28:15.128 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:28:15.128 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:28:15.128 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:28:15.128 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:28:15.128 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:28:15.128 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:28:15.128 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:28:15.128 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:28:15.138 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:28:15.138 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:28:15.138 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 23:28:15.138 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:28:15.148 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 23:28:15.148 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:28:15.148 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 23:28:15.148 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:28:15.148 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 476 476 229 229 37478 150\n [Camera]
17-03-17 23:28:15.348 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:28:15.828 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 668
17-03-17 23:28:15.828 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 668
17-03-17 23:28:15.828 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:28:15.828 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:28:15.828 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 23:28:15.828 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 668
17-03-17 23:28:15.828 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 668
17-03-17 23:28:15.838 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:28:15.958 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:28:15.958 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 23:28:16.028 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37478 864
17-03-17 23:28:16.168 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1011
17-03-17 23:28:16.238 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 23:28:16.238 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 23:28:16.238 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:28:16.238 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:28:16.238 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms.
17-03-17 23:28:16.338 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 383 ms.
17-03-17 23:28:16.338 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 23:28:16.338 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:28:16.338 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:28:16.348 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 514 ms.
17-03-17 23:28:16.398 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1240
17-03-17 23:28:16.398 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1240
17-03-17 23:28:16.398 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:28:16.398 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:28:16.398 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 23:28:16.408 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1240
17-03-17 23:28:16.408 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1240
17-03-17 23:28:16.408 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:28:16.408 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:28:16.408 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 1145516880, 0x0, 418435064) start.
17-03-17 23:28:16.478 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 3.978563,
17-03-17 23:28:16.588 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP 1433
17-03-17 23:28:16.588 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:28:16.588 -07 000000610 INF: FPGA: 'CAMDBLSNAP 476 476 229 229 37478 150' command took 2 ms to send, 1429 ms to get response, and 1439 ms overall
17-03-17 23:28:16.598 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:28:16.598 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.39501953125, Z-Position -0.170766265748242. ------
17-03-17 23:28:16.598 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:28:16.598 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17723 mm
17-03-17 23:28:16.598 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:28:16.598 -07 000000475 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 23:28:16.598 -07 000000475 INF: Y Motor: Moving to 63.2326 mm, started at 62.3950 mm, delta = 0.8376 mm
17-03-17 23:28:16.598 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 38715, sync = True, waitForSettling = False)
17-03-17 23:28:16.598 -07 000000561 INF: Z Motor: Moving to -0.177226 mm, started at -0.170766 mm, distance = -6.46 um
17-03-17 23:28:16.598 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:28:16.608 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:28:16.608 -07 000000561 INF: FPGA: Xmit ZDACW 38715\n [Z Motor]
17-03-17 23:28:16.608 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 23:28:16.618 -07 000000561 INF: FPGA: 'ZDACW 38715' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:28:16.618 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:28:16.618 -07 000000433 INF: FPGA: Recv YRDPOS 127785
17-03-17 23:28:16.628 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 20 ms overall
17-03-17 23:28:16.628 -07 000000448 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:28:16.628 -07 000000475 INF: Y Motor: Encoder = 127785 = motor step 99832.0 = 62.3950 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:28:16.628 -07 000000475 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:28:16.628 -07 000000475 INF: Y Motor: Moving 1340 steps-17
17-03-17 23:28:16.638 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:28:16.638 -07 000000541 INF: FPGA: Recv ZDACR 38715
17-03-17 23:28:16.648 -07 000000475 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:28:16.648 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:28:16.648 -07 000000561 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-17 23:28:16.778 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 23:28:16.788 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 23:28:16.788 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:28:16.788 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 1145516880, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 23:28:16.788 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 23:28:16.788 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:28:16.788 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:28:16.788 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 23:28:16.788 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 23:28:16.798 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 23:28:16.828 -07 000000541 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:28:16.828 -07 000000448 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 23:28:17.028 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 23:28:17.028 -07 000000475 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 400 ms overall
17-03-17 23:28:17.068 -07 000000409 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:28:17.068 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 75. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1215, R2=1270, Total=2485. Warn if over 250 bubbles per interval.
17-03-17 23:28:17.068 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:28:17.078 -07 000000627 INF: FPGA: Recv YRDPOS 129481
17-03-17 23:28:17.078 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 23:28:17.078 -07 000000475 INF: Y Motor: Encoder = 129481 = motor step 101157.0 = 63.2231 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:28:17.078 -07 000000475 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 23:28:17.078 -07 000000475 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 400 ms, distance = 0.838 mm, average velocity = 2.094 mm/sec
17-03-17 23:28:18.028 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:28:18.028 -07 000000576 INF: FPGA: Recv YRDPOS 129482
17-03-17 23:28:18.038 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:28:18.038 -07 000000475 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:28:18.058 -07 000000475 INF: Y Motor: After move to 63.232609, error = -0.008976, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:28:18.058 -07 000000475 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 23:28:18.058 -07 000000475 INF: Y Motor: Moved to 63.2236 after 1458 ms (table move)
17-03-17 23:28:18.068 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177226 mm (DAC = 38715)
17-03-17 23:28:18.068 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:18.068 -07 000000409 INF: FPGA: Recv ZSGSRD 36868
17-03-17 23:28:18.078 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:18.078 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:18.078 -07 000000627 INF: FPGA: Recv ZSGSRD 36878
17-03-17 23:28:18.088 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:18.088 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:18.088 -07 000000512 INF: FPGA: Recv ZSGSRD 36884
17-03-17 23:28:18.098 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:18.098 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:18.098 -07 000000502 INF: FPGA: Recv ZSGSRD 36877
17-03-17 23:28:18.108 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:18.108 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:18.108 -07 000000486 INF: FPGA: Recv ZSGSRD 36883
17-03-17 23:28:18.118 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:18.118 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:18.118 -07 000000627 INF: FPGA: Recv ZSGSRD 36873
17-03-17 23:28:18.128 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:18.128 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:18.128 -07 000000459 INF: FPGA: Recv ZSGSRD 36875
17-03-17 23:28:18.138 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:18.138 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:18.138 -07 000000502 INF: FPGA: Recv ZSGSRD 36878
17-03-17 23:28:18.148 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:18.148 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:18.148 -07 000000486 INF: FPGA: Recv ZSGSRD 36871
17-03-17 23:28:18.158 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:18.158 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:18.158 -07 000000627 INF: FPGA: Recv ZSGSRD 36877
17-03-17 23:28:18.168 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:18.168 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:28:18.168 -07 000000433 INF: FPGA: Recv ZPIEZORD 33128
17-03-17 23:28:18.178 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:18.178 -07 000000438 INF: Z Motor: Piezo is near 50.8 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.908 V. Piezo Error = -8.3 V.
17-03-17 23:28:18.178 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.2 um, Read 10 ADC samples: Avg = 36876 (-176.3 uncal um), Error = 0.9 uncal um, Median = 36877 (-176.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36868 (-176.3 uncal um), Max = 36884 (-176.4 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 23:28:18.178 -07 000000438 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36876, posNoise = 8, negNoise = 8
17-03-17 23:28:18.178 -07 000000438 INF: Z Motor: After move to -0.177226, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:28:18.178 -07 000000438 INF: Z Motor: Settle wait time = 1461 ms, measure time = 111 ms (allowed 150 ms), total time = 1572 ms
17-03-17 23:28:18.178 -07 000000438 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 23:28:18.218 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1613 ms
17-03-17 23:28:18.218 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:28:18.218 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:28:18.218 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:28:18.218 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:28:18.218 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:28:18.218 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:28:18.218 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:28:18.218 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:28:18.218 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:28:18.228 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 23:28:18.228 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:28:18.228 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 23:28:18.228 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 23:28:18.238 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:28:18.278 -07 000000623 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:28:18.478 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:28:18.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:28:18.478 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:28:18.478 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1130172064, 0x0, 559484976) start.
17-03-17 23:28:18.518 -07 000000576 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:28:18.518 -07 000000433 INF: FPGA: Recv CAMSNAP
17-03-17 23:28:18.518 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 287 ms overall
17-03-17 23:28:18.608 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1130172064, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 23:28:18.608 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:28:18.608 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:28:18.608 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 23:28:18.718 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:28:18.718 -07 000000512 INF: Autofocus start
17-03-17 23:28:18.718 -07 000000512 INF: MeasureProfile start
17-03-17 23:28:18.728 -07 000000459 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:28:18.728 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:28:18.728 -07 000000448 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:28:18.728 -07 000000512 INF: MeasureProfile done
17-03-17 23:28:18.728 -07 000000512 INF: X=48  Z correction [um]=0.1739867
17-03-17 23:28:18.728 -07 000000512 INF: Autofocus finished
17-03-17 23:28:18.928 -07 000000627 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:28:18.928 -07 000000448 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:28:18.928 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.2236328125, Z-position -0.177222598950712. ----------
17-03-17 23:28:18.928 -07 000000610 INF: Cycle	76	Tile	5	Exposure Settings		A	476	G	229	T	229	C	476
17-03-17 23:28:18.938 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37266, sync = True, waitForSettling = True)
17-03-17 23:28:18.938 -07 000000610 INF: Z Motor: Moving to -0.170593 mm, started at -0.177223 mm, distance = 6.63 um
17-03-17 23:28:18.938 -07 000000610 INF: FPGA: Xmit ZDACW 37266\n [Z Motor]
17-03-17 23:28:18.938 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 23:28:18.948 -07 000000610 INF: FPGA: 'ZDACW 37266' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:18.948 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:28:18.948 -07 000000576 INF: FPGA: Recv ZDACR 37266
17-03-17 23:28:18.958 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:18.958 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:28:19.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:19.108 -07 000000448 INF: FPGA: Recv ZSGSRD 35844
17-03-17 23:28:19.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:28:19.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:19.118 -07 000000433 INF: FPGA: Recv ZSGSRD 35848
17-03-17 23:28:19.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:19.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:19.128 -07 000000576 INF: FPGA: Recv ZSGSRD 35841
17-03-17 23:28:19.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:19.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:19.138 -07 000000486 INF: FPGA: Recv ZSGSRD 35844
17-03-17 23:28:19.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 2 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:19.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:19.148 -07 000000438 INF: FPGA: Recv ZSGSRD 35844
17-03-17 23:28:19.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:19.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:19.158 -07 000000623 INF: FPGA: Recv ZSGSRD 35842
17-03-17 23:28:19.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:19.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:19.168 -07 000000409 INF: FPGA: Recv ZSGSRD 35846
17-03-17 23:28:19.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:19.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:19.178 -07 000000448 INF: FPGA: Recv ZSGSRD 35842
17-03-17 23:28:19.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:19.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:19.188 -07 000000459 INF: FPGA: Recv ZSGSRD 35848
17-03-17 23:28:19.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:19.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:19.198 -07 000000480 INF: FPGA: Recv ZSGSRD 35844
17-03-17 23:28:19.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:19.208 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:28:19.208 -07 000000576 INF: FPGA: Recv ZPIEZORD 31720
17-03-17 23:28:19.218 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:19.218 -07 000000610 INF: Z Motor: Piezo is near 47.8 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.686 V. Piezo Error = -9.1 V.
17-03-17 23:28:19.218 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.6 um, Read 10 ADC samples: Avg = 35844 (-169.7 uncal um), Error = 0.9 uncal um, Median = 35844 (-169.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35841 (-169.7 uncal um), Max = 35848 (-169.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 23:28:19.218 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35844, posNoise = 4, negNoise = 3
17-03-17 23:28:19.218 -07 000000610 INF: Z Motor: After move to -0.170593, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:28:19.218 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 23:28:19.218 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:28:19.218 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:28:19.218 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:28:19.218 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:28:19.218 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:28:19.218 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:28:19.218 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:28:19.218 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:28:19.218 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 23:28:19.218 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:28:19.218 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:28:19.218 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:28:19.218 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:28:19.218 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:28:19.218 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:28:19.228 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:28:19.228 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 23:28:19.228 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:28:19.238 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms.
17-03-17 23:28:19.238 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 23:28:19.238 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 476 476 229 229 37443 150\n [Camera]
17-03-17 23:28:19.438 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:28:19.918 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 668
17-03-17 23:28:19.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 668
17-03-17 23:28:19.918 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:28:19.918 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:28:19.918 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 23:28:19.918 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 668
17-03-17 23:28:19.918 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 668
17-03-17 23:28:19.918 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:28:19.918 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:28:19.918 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 23:28:20.108 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37443 861
17-03-17 23:28:20.258 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1014
17-03-17 23:28:20.298 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 23:28:20.298 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 23:28:20.298 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:28:20.298 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 23:28:20.298 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 23:28:20.298 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:28:20.298 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:28:20.298 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:28:20.298 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 23:28:20.308 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 23:28:20.488 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1240
17-03-17 23:28:20.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1240
17-03-17 23:28:20.488 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:28:20.598 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1240
17-03-17 23:28:20.598 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1240
17-03-17 23:28:20.598 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:28:20.598 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 23:28:20.608 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:28:20.608 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:28:20.608 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 23:28:20.678 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1432
17-03-17 23:28:20.678 -07 000000486 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:28:20.678 -07 000000610 INF: FPGA: 'CAMDBLSNAP 476 476 229 229 37443 150' command took 2 ms to send, 1434 ms to get response, and 1439 ms overall
17-03-17 23:28:20.678 -07 000000610 INF: Skipping AutoFocus in Tile 6: adopting Best-Z from the cache: -0.171118
17-03-17 23:28:20.678 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17112 mm
17-03-17 23:28:20.678 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:28:20.678 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 37381, sync = True, waitForSettling = False)
17-03-17 23:28:20.678 -07 000000480 INF: Z Motor: Moving to -0.171119 mm, started at -0.170593 mm, distance = -0.53 um
17-03-17 23:28:20.678 -07 000000480 INF: FPGA: Xmit ZDACW 37381\n [Z Motor]
17-03-17 23:28:20.678 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 23:28:20.678 -07 000000512 INF: Y Motor: Moving to 64.0626 mm, started at 63.2236 mm, delta = 0.8390 mm
17-03-17 23:28:20.688 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:28:20.688 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 23:28:20.688 -07 000000480 INF: FPGA: 'ZDACW 37381' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 23:28:20.688 -07 000000576 INF: FPGA: Recv YRDPOS 129482
17-03-17 23:28:20.698 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:28:20.698 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:28:20.698 -07 000000512 INF: Y Motor: Encoder = 129482 = motor step 101157.8 = 63.2236 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:28:20.698 -07 000000512 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:28:20.698 -07 000000512 INF: Y Motor: Moving 1342 steps-19
17-03-17 23:28:20.698 -07 000000459 INF: FPGA: Recv ZDACR 37381
17-03-17 23:28:20.708 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 23:28:20.708 -07 000000480 INF: Z Motor: MoveAbsStepped took 21 ms (did NOT wait for settling yet))
17-03-17 23:28:20.708 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:28:20.988 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 23:28:20.988 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 23:28:20.988 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:28:20.988 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 23:28:20.988 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 23:28:20.988 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:28:20.988 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:28:20.988 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:28:20.988 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 504 ms.
17-03-17 23:28:20.998 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 23:28:21.078 -07 000000541 INF: FPGA: Recv YMVTILE
17-03-17 23:28:21.078 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 23:28:21.118 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:28:21.128 -07 000000502 INF: FPGA: Recv YRDPOS 131187
17-03-17 23:28:21.138 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:28:21.138 -07 000000512 INF: Y Motor: Encoder = 131187 = motor step 102489.8 = 64.0562 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:28:21.138 -07 000000512 INF: Y Motor: Position error before settling (table move) = -13 encoder counts (-0.006 mm)
17-03-17 23:28:21.138 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.839 mm, average velocity = 2.162 mm/sec
17-03-17 23:28:21.838 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 3.99219,
17-03-17 23:28:22.068 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:28:22.068 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 75. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1215, R2=1270, Total=2485. Warn if over 250 bubbles per interval.
17-03-17 23:28:22.088 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:28:22.088 -07 000000409 INF: FPGA: Recv YRDPOS 131188
17-03-17 23:28:22.098 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:28:22.098 -07 000000512 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:28:22.118 -07 000000512 INF: Y Motor: After move to 64.062607, error = -0.005966, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:28:22.118 -07 000000512 INF: Y Motor: Position error after settling (table move) = -12 encoder counts (-0.006 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 23:28:22.118 -07 000000512 INF: Y Motor: Moved to 64.0566 after 1435 ms (table move)
17-03-17 23:28:22.118 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171119 mm (DAC = 37381)
17-03-17 23:28:22.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:22.128 -07 000000618 INF: FPGA: Recv ZSGSRD 35929
17-03-17 23:28:22.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 4 ms overall
17-03-17 23:28:22.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:22.128 -07 000000433 INF: FPGA: Recv ZSGSRD 35925
17-03-17 23:28:22.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:28:22.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:22.138 -07 000000623 INF: FPGA: Recv ZSGSRD 35934
17-03-17 23:28:22.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:28:22.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:22.148 -07 000000475 INF: FPGA: Recv ZSGSRD 35931
17-03-17 23:28:22.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:22.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:22.158 -07 000000480 INF: FPGA: Recv ZSGSRD 35926
17-03-17 23:28:22.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:22.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:22.168 -07 000000561 INF: FPGA: Recv ZSGSRD 35927
17-03-17 23:28:22.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:22.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:22.178 -07 000000448 INF: FPGA: Recv ZSGSRD 35919
17-03-17 23:28:22.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:22.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:22.188 -07 000000541 INF: FPGA: Recv ZSGSRD 35925
17-03-17 23:28:22.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:22.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:22.198 -07 000000618 INF: FPGA: Recv ZSGSRD 35923
17-03-17 23:28:22.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:22.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:22.208 -07 000000561 INF: FPGA: Recv ZSGSRD 35934
17-03-17 23:28:22.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:22.218 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:28:22.218 -07 000000409 INF: FPGA: Recv ZPIEZORD 31832
17-03-17 23:28:22.228 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:22.228 -07 000000610 INF: Z Motor: Piezo is near 48.0 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.704 V. Piezo Error = -9.0 V.
17-03-17 23:28:22.228 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.1 um, Read 10 ADC samples: Avg = 35927 (-170.2 uncal um), Error = 0.9 uncal um, Median = 35926 (-170.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35919 (-170.2 uncal um), Max = 35934 (-170.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 23:28:22.228 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35927, posNoise = 7, negNoise = 8
17-03-17 23:28:22.228 -07 000000610 INF: Z Motor: After move to -0.171119, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:28:22.228 -07 000000610 INF: Z Motor: Settle wait time = 1438 ms, measure time = 104 ms (allowed 150 ms), total time = 1542 ms
17-03-17 23:28:22.228 -07 000000610 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 23:28:22.278 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1593 ms
17-03-17 23:28:22.278 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:28:22.278 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.056640625, Z-position -0.171126021628181. ----------
17-03-17 23:28:22.278 -07 000000610 INF: Cycle	76	Tile	6	Exposure Settings		A	476	G	229	T	229	C	476
17-03-17 23:28:22.278 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37204, sync = True, waitForSettling = True)
17-03-17 23:28:22.278 -07 000000610 INF: Z Motor: Moving to -0.170309 mm, started at -0.171126 mm, distance = 0.82 um
17-03-17 23:28:22.278 -07 000000610 INF: FPGA: Xmit ZDACW 37204\n [Z Motor]
17-03-17 23:28:22.278 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 23:28:22.288 -07 000000610 INF: FPGA: 'ZDACW 37204' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:28:22.288 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:28:22.288 -07 000000438 INF: FPGA: Recv ZDACR 37204
17-03-17 23:28:22.298 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:22.298 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:28:22.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:22.448 -07 000000459 INF: FPGA: Recv ZSGSRD 35805
17-03-17 23:28:22.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:28:22.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:22.458 -07 000000627 INF: FPGA: Recv ZSGSRD 35797
17-03-17 23:28:22.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:22.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:22.468 -07 000000438 INF: FPGA: Recv ZSGSRD 35803
17-03-17 23:28:22.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:22.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:22.478 -07 000000561 INF: FPGA: Recv ZSGSRD 35803
17-03-17 23:28:22.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:22.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:22.488 -07 000000459 INF: FPGA: Recv ZSGSRD 35809
17-03-17 23:28:22.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:22.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:22.498 -07 000000475 INF: FPGA: Recv ZSGSRD 35801
17-03-17 23:28:22.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:22.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:22.508 -07 000000618 INF: FPGA: Recv ZSGSRD 35801
17-03-17 23:28:22.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:22.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:22.518 -07 000000433 INF: FPGA: Recv ZSGSRD 35796
17-03-17 23:28:22.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:22.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:22.528 -07 000000512 INF: FPGA: Recv ZSGSRD 35802
17-03-17 23:28:22.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:22.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:22.538 -07 000000627 INF: FPGA: Recv ZSGSRD 35808
17-03-17 23:28:22.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:22.548 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:28:22.548 -07 000000576 INF: FPGA: Recv ZPIEZORD 31689
17-03-17 23:28:22.558 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:22.558 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.677 V. Piezo Error = -9.1 V.
17-03-17 23:28:22.558 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.3 um, Read 10 ADC samples: Avg = 35802 (-169.4 uncal um), Error = 0.9 uncal um, Median = 35802 (-169.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35796 (-169.4 uncal um), Max = 35809 (-169.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:28:22.558 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35802, posNoise = 7, negNoise = 6
17-03-17 23:28:22.558 -07 000000610 INF: Z Motor: After move to -0.170309, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:28:22.558 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 23:28:22.558 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:28:22.558 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:28:22.558 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:28:22.558 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:28:22.558 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:28:22.558 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:28:22.558 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:28:22.558 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:28:22.558 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:28:22.558 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:28:22.558 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:28:22.568 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:28:22.568 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 23:28:22.568 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 23:28:22.568 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:28:22.568 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:28:22.588 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 23:28:22.588 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 24 ms.
17-03-17 23:28:22.588 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 17 ms.
17-03-17 23:28:22.588 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 25 ms.
17-03-17 23:28:22.588 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 476 476 229 229 37381 150\n [Camera]
17-03-17 23:28:22.788 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:28:23.268 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 668
17-03-17 23:28:23.268 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 668
17-03-17 23:28:23.268 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:28:23.268 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:28:23.268 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 23:28:23.268 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 668
17-03-17 23:28:23.268 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 668
17-03-17 23:28:23.268 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:28:23.268 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:28:23.268 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1145516880, 0x0, 418435064) start.
17-03-17 23:28:23.458 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37381 861
17-03-17 23:28:23.608 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1011
17-03-17 23:28:23.648 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1145516880, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 23:28:23.648 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 23:28:23.648 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:28:23.648 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:28:23.648 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 23:28:23.648 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 23:28:23.648 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:28:23.648 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:28:23.648 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 23:28:23.658 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 23:28:23.838 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1240
17-03-17 23:28:23.838 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1240
17-03-17 23:28:23.838 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:28:23.838 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:28:23.838 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 23:28:23.838 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1240
17-03-17 23:28:23.848 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1240
17-03-17 23:28:23.848 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:28:23.848 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:28:23.848 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 23:28:24.028 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1433
17-03-17 23:28:24.028 -07 000000433 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:28:24.028 -07 000000610 INF: FPGA: 'CAMDBLSNAP 476 476 229 229 37381 150' command took 2 ms to send, 1428 ms to get response, and 1440 ms overall
17-03-17 23:28:24.038 -07 000000610 INF: Skipping AutoFocus in Tile 7: adopting Best-Z from the cache: -0.170423
17-03-17 23:28:24.038 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17042 mm
17-03-17 23:28:24.038 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:28:24.038 -07 000000486 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 23:28:24.038 -07 000000486 INF: Y Motor: Moving to 64.8926 mm, started at 64.0566 mm, delta = 0.8360 mm
17-03-17 23:28:24.038 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:28:24.038 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 37229, sync = True, waitForSettling = False)
17-03-17 23:28:24.038 -07 000000502 INF: Z Motor: Moving to -0.170423 mm, started at -0.170323 mm, distance = -0.10 um
17-03-17 23:28:24.038 -07 000000433 INF: FPGA: Recv YRDPOS 131188
17-03-17 23:28:24.048 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:28:24.048 -07 000000486 INF: Y Motor: Encoder = 131188 = motor step 102490.6 = 64.0566 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:28:24.048 -07 000000486 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:28:24.048 -07 000000486 INF: Y Motor: Moving 1338 steps-13
17-03-17 23:28:24.048 -07 000000502 INF: FPGA: Xmit ZDACW 37229\n [Z Motor]
17-03-17 23:28:24.048 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 23:28:24.058 -07 000000502 INF: FPGA: 'ZDACW 37229' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 23:28:24.058 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:28:24.058 -07 000000627 INF: FPGA: Recv ZDACR 37229
17-03-17 23:28:24.068 -07 000000486 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:28:24.068 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:24.068 -07 000000502 INF: Z Motor: MoveAbsStepped took 25 ms (did NOT wait for settling yet))
17-03-17 23:28:24.218 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 381 ms.
17-03-17 23:28:24.218 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 23:28:24.218 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:28:24.228 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:28:24.228 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 23:28:24.228 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 23:28:24.228 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 23:28:24.228 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:28:24.228 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:28:24.238 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 23:28:24.438 -07 000000448 INF: FPGA: Recv YMVTILE
17-03-17 23:28:24.438 -07 000000486 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 258 ms to get response, and 397 ms overall
17-03-17 23:28:24.488 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:28:24.488 -07 000000618 INF: FPGA: Recv YRDPOS 132870
17-03-17 23:28:24.498 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:24.498 -07 000000486 INF: Y Motor: Encoder = 132870 = motor step 103804.7 = 64.8779 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:28:24.498 -07 000000486 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 23:28:24.498 -07 000000486 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.836 mm, average velocity = 2.100 mm/sec
17-03-17 23:28:25.448 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:28:25.448 -07 000000623 INF: FPGA: Recv YRDPOS 132871
17-03-17 23:28:25.458 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:28:25.458 -07 000000486 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:28:25.478 -07 000000486 INF: Y Motor: After move to 64.892609, error = -0.014191, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:28:25.478 -07 000000486 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 23:28:25.478 -07 000000486 INF: Y Motor: Moved to 64.8784 after 1441 ms (table move)
17-03-17 23:28:25.478 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.170423 mm (DAC = 37229)
17-03-17 23:28:25.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:25.488 -07 000000433 INF: FPGA: Recv ZSGSRD 35832
17-03-17 23:28:25.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 23:28:25.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:25.488 -07 000000448 INF: FPGA: Recv ZSGSRD 35816
17-03-17 23:28:25.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:28:25.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:25.498 -07 000000623 INF: FPGA: Recv ZSGSRD 35819
17-03-17 23:28:25.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:25.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:25.508 -07 000000561 INF: FPGA: Recv ZSGSRD 35824
17-03-17 23:28:25.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:25.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:25.528 -07 000000576 INF: FPGA: Recv ZSGSRD 35825
17-03-17 23:28:25.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 6 ms overall
17-03-17 23:28:25.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:25.528 -07 000000438 INF: FPGA: Recv ZSGSRD 35821
17-03-17 23:28:25.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:28:25.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:25.538 -07 000000623 INF: FPGA: Recv ZSGSRD 35816
17-03-17 23:28:25.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:25.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:25.548 -07 000000409 INF: FPGA: Recv ZSGSRD 35814
17-03-17 23:28:25.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:25.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:25.558 -07 000000433 INF: FPGA: Recv ZSGSRD 35819
17-03-17 23:28:25.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:25.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:25.568 -07 000000448 INF: FPGA: Recv ZSGSRD 35815
17-03-17 23:28:25.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:25.578 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:28:25.578 -07 000000475 INF: FPGA: Recv ZPIEZORD 31700
17-03-17 23:28:25.588 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:25.588 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.681 V. Piezo Error = -9.1 V.
17-03-17 23:28:25.588 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.4 um, Read 10 ADC samples: Avg = 35820 (-169.6 uncal um), Error = 0.9 uncal um, Median = 35819 (-169.6 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 35814 (-169.5 uncal um), Max = 35832 (-169.6 uncal um), Pos Noise = 12 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:28:25.588 -07 000000610 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35820, posNoise = 12, negNoise = 6
17-03-17 23:28:25.588 -07 000000610 INF: Z Motor: After move to -0.170423, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:28:25.588 -07 000000610 INF: Z Motor: Settle wait time = 1443 ms, measure time = 103 ms (allowed 150 ms), total time = 1546 ms
17-03-17 23:28:25.588 -07 000000610 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms
17-03-17 23:28:25.638 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1597 ms
17-03-17 23:28:25.638 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:28:25.638 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87841796875, Z-position -0.170438630929012. ----------
17-03-17 23:28:25.638 -07 000000610 INF: Cycle	76	Tile	7	Exposure Settings		A	476	G	229	T	229	C	476
17-03-17 23:28:25.638 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37052, sync = True, waitForSettling = True)
17-03-17 23:28:25.638 -07 000000610 INF: Z Motor: Moving to -0.169613 mm, started at -0.170439 mm, distance = 0.83 um
17-03-17 23:28:25.638 -07 000000610 INF: FPGA: Xmit ZDACW 37052\n [Z Motor]
17-03-17 23:28:25.638 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 23:28:25.648 -07 000000610 INF: FPGA: 'ZDACW 37052' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:28:25.648 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:28:25.648 -07 000000480 INF: FPGA: Recv ZDACR 37052
17-03-17 23:28:25.658 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:25.658 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:28:25.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:25.808 -07 000000433 INF: FPGA: Recv ZSGSRD 35690
17-03-17 23:28:25.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:28:25.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:25.818 -07 000000475 INF: FPGA: Recv ZSGSRD 35698
17-03-17 23:28:25.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:25.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:25.828 -07 000000561 INF: FPGA: Recv ZSGSRD 35690
17-03-17 23:28:25.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:25.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:25.838 -07 000000541 INF: FPGA: Recv ZSGSRD 35694
17-03-17 23:28:25.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:25.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:25.848 -07 000000576 INF: FPGA: Recv ZSGSRD 35700
17-03-17 23:28:25.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:25.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:25.858 -07 000000448 INF: FPGA: Recv ZSGSRD 35692
17-03-17 23:28:25.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:25.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:25.868 -07 000000459 INF: FPGA: Recv ZSGSRD 35690
17-03-17 23:28:25.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:25.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:25.878 -07 000000627 INF: FPGA: Recv ZSGSRD 35691
17-03-17 23:28:25.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:25.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:25.888 -07 000000438 INF: FPGA: Recv ZSGSRD 35689
17-03-17 23:28:25.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:25.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:25.898 -07 000000475 INF: FPGA: Recv ZSGSRD 35692
17-03-17 23:28:25.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:25.908 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:28:25.908 -07 000000561 INF: FPGA: Recv ZPIEZORD 31551
17-03-17 23:28:25.918 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:25.918 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.654 V. Piezo Error = -9.1 V.
17-03-17 23:28:25.918 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.6 um, Read 10 ADC samples: Avg = 35693 (-168.7 uncal um), Error = 0.9 uncal um, Median = 35692 (-168.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35689 (-168.7 uncal um), Max = 35700 (-168.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:28:25.918 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35693, posNoise = 7, negNoise = 4
17-03-17 23:28:25.918 -07 000000610 INF: Z Motor: After move to -0.169613, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:28:25.918 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 23:28:25.918 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:28:25.918 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:28:25.918 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:28:25.918 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:28:25.918 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:28:25.918 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:28:25.918 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:28:25.918 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:28:25.918 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:28:25.918 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:28:25.918 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:28:25.918 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:28:25.928 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:28:25.928 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:28:25.928 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:28:25.928 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:28:25.938 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 23:28:25.938 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:28:25.938 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 23:28:25.938 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:28:25.938 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 476 476 229 229 37229 150\n [Camera]
17-03-17 23:28:26.138 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:28:26.618 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 668
17-03-17 23:28:26.618 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 668
17-03-17 23:28:26.618 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:28:26.618 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 668
17-03-17 23:28:26.618 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 668
17-03-17 23:28:26.618 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:28:26.628 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:28:26.628 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 23:28:26.628 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:28:26.628 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start.
17-03-17 23:28:26.808 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37229 861
17-03-17 23:28:26.958 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1011
17-03-17 23:28:26.998 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 23:28:26.998 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 23:28:26.998 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:28:26.998 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:28:26.998 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 23:28:27.008 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 23:28:27.008 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 23:28:27.008 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:28:27.008 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:28:27.018 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 23:28:27.068 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:28:27.068 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 75. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1215, R2=1270, Total=2485. Warn if over 250 bubbles per interval.
17-03-17 23:28:27.188 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1240
17-03-17 23:28:27.188 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1240
17-03-17 23:28:27.188 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:28:27.188 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:28:27.188 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 23:28:27.198 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 3.988112,
17-03-17 23:28:27.198 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1240
17-03-17 23:28:27.198 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1240
17-03-17 23:28:27.198 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:28:27.198 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:28:27.198 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1145516880, 0x0, 418435064) start.
17-03-17 23:28:27.378 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP 1433
17-03-17 23:28:27.388 -07 000000623 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:28:27.388 -07 000000610 INF: FPGA: 'CAMDBLSNAP 476 476 229 229 37229 150' command took 2 ms to send, 1430 ms to get response, and 1441 ms overall
17-03-17 23:28:27.388 -07 000000610 INF: Skipping AutoFocus in Tile 8: adopting Best-Z from the cache: -0.170189
17-03-17 23:28:27.388 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17019 mm
17-03-17 23:28:27.388 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:28:27.388 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 23:28:27.388 -07 000000561 INF: Y Motor: Moving to 65.7226 mm, started at 64.8784 mm, delta = 0.8442 mm
17-03-17 23:28:27.388 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:28:27.388 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 37178, sync = True, waitForSettling = False)
17-03-17 23:28:27.388 -07 000000576 INF: Z Motor: Moving to -0.170190 mm, started at -0.169623 mm, distance = -0.57 um
17-03-17 23:28:27.398 -07 000000627 INF: FPGA: Recv YRDPOS 132871
17-03-17 23:28:27.398 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 23:28:27.398 -07 000000561 INF: Y Motor: Encoder = 132871 = motor step 103805.5 = 64.8784 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:28:27.398 -07 000000561 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:28:27.398 -07 000000561 INF: Y Motor: Moving 1351 steps-30
17-03-17 23:28:27.398 -07 000000576 INF: FPGA: Xmit ZDACW 37178\n [Z Motor]
17-03-17 23:28:27.398 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 23:28:27.408 -07 000000576 INF: FPGA: 'ZDACW 37178' command took 1 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 23:28:27.408 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:28:27.418 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:28:27.418 -07 000000448 INF: FPGA: Recv ZDACR 37178
17-03-17 23:28:27.428 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:28:27.428 -07 000000576 INF: Z Motor: MoveAbsStepped took 31 ms (did NOT wait for settling yet))
17-03-17 23:28:27.578 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 23:28:27.578 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 23:28:27.578 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:28:27.578 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1145516880, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 23:28:27.578 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 23:28:27.578 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:28:27.578 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:28:27.578 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 23:28:27.578 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:28:27.588 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 23:28:27.778 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 23:28:27.778 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 23:28:27.838 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:28:27.848 -07 000000438 INF: FPGA: Recv YRDPOS 134581
17-03-17 23:28:27.848 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 23:28:27.848 -07 000000561 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:28:27.848 -07 000000561 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 23:28:27.848 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.844 mm, average velocity = 2.181 mm/sec
17-03-17 23:28:28.798 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:28:28.798 -07 000000512 INF: FPGA: Recv YRDPOS 134581
17-03-17 23:28:28.808 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:28:28.808 -07 000000561 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:28:28.838 -07 000000561 INF: Y Motor: After move to 65.722610, error = -0.009232, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:28:28.838 -07 000000561 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:28:28.838 -07 000000561 INF: Y Motor: Moved to 65.7134 after 1445 ms (table move)
17-03-17 23:28:28.838 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.170190 mm (DAC = 37178)
17-03-17 23:28:28.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:28.838 -07 000000459 INF: FPGA: Recv ZSGSRD 35790
17-03-17 23:28:28.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:28:28.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:28.848 -07 000000623 INF: FPGA: Recv ZSGSRD 35783
17-03-17 23:28:28.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:28.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:28.858 -07 000000409 INF: FPGA: Recv ZSGSRD 35784
17-03-17 23:28:28.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:28.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:28.868 -07 000000627 INF: FPGA: Recv ZSGSRD 35781
17-03-17 23:28:28.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:28.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:28.878 -07 000000512 INF: FPGA: Recv ZSGSRD 35779
17-03-17 23:28:28.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:28.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:28.888 -07 000000576 INF: FPGA: Recv ZSGSRD 35783
17-03-17 23:28:28.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:28.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:28.898 -07 000000561 INF: FPGA: Recv ZSGSRD 35782
17-03-17 23:28:28.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:28.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:28.908 -07 000000627 INF: FPGA: Recv ZSGSRD 35781
17-03-17 23:28:28.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:28.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:28.918 -07 000000502 INF: FPGA: Recv ZSGSRD 35789
17-03-17 23:28:28.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:28.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:28.928 -07 000000480 INF: FPGA: Recv ZSGSRD 35789
17-03-17 23:28:28.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:28.938 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:28:28.938 -07 000000541 INF: FPGA: Recv ZPIEZORD 31700
17-03-17 23:28:28.948 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:28.948 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.673 V. Piezo Error = -9.0 V.
17-03-17 23:28:28.948 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.2 um, Read 10 ADC samples: Avg = 35784 (-169.3 uncal um), Error = 0.9 uncal um, Median = 35783 (-169.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35779 (-169.3 uncal um), Max = 35790 (-169.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:28:28.948 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35784, posNoise = 6, negNoise = 5
17-03-17 23:28:28.948 -07 000000610 INF: Z Motor: After move to -0.170190, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:28:28.948 -07 000000610 INF: Z Motor: Settle wait time = 1446 ms, measure time = 106 ms (allowed 150 ms), total time = 1552 ms
17-03-17 23:28:28.948 -07 000000610 INF: Z Motor: Waiting extra 44 ms after reading position to reach expected total of 150 ms
17-03-17 23:28:28.998 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms
17-03-17 23:28:28.998 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:28:28.998 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71337890625, Z-position -0.170207359291909. ----------
17-03-17 23:28:28.998 -07 000000610 INF: Cycle	76	Tile	8	Exposure Settings		A	476	G	229	T	229	C	476
17-03-17 23:28:28.998 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37001, sync = True, waitForSettling = True)
17-03-17 23:28:28.998 -07 000000610 INF: Z Motor: Moving to -0.169380 mm, started at -0.170207 mm, distance = 0.83 um
17-03-17 23:28:28.998 -07 000000610 INF: FPGA: Xmit ZDACW 37001\n [Z Motor]
17-03-17 23:28:28.998 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 23:28:29.008 -07 000000610 INF: FPGA: 'ZDACW 37001' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 23:28:29.008 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:28:29.008 -07 000000486 INF: FPGA: Recv ZDACR 37001
17-03-17 23:28:29.018 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:28:29.018 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:28:29.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:29.168 -07 000000480 INF: FPGA: Recv ZSGSRD 35658
17-03-17 23:28:29.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:28:29.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:29.178 -07 000000502 INF: FPGA: Recv ZSGSRD 35662
17-03-17 23:28:29.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:29.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:29.188 -07 000000448 INF: FPGA: Recv ZSGSRD 35649
17-03-17 23:28:29.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:29.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:29.198 -07 000000627 INF: FPGA: Recv ZSGSRD 35655
17-03-17 23:28:29.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:29.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:29.208 -07 000000459 INF: FPGA: Recv ZSGSRD 35658
17-03-17 23:28:29.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:29.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:29.218 -07 000000502 INF: FPGA: Recv ZSGSRD 35651
17-03-17 23:28:29.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:29.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:29.228 -07 000000448 INF: FPGA: Recv ZSGSRD 35668
17-03-17 23:28:29.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:29.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:29.238 -07 000000541 INF: FPGA: Recv ZSGSRD 35658
17-03-17 23:28:29.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:29.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:29.248 -07 000000459 INF: FPGA: Recv ZSGSRD 35656
17-03-17 23:28:29.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:29.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:29.258 -07 000000502 INF: FPGA: Recv ZSGSRD 35660
17-03-17 23:28:29.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:29.268 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:28:29.268 -07 000000448 INF: FPGA: Recv ZPIEZORD 31493
17-03-17 23:28:29.278 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:29.278 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.646 V. Piezo Error = -9.2 V.
17-03-17 23:28:29.278 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.4 um, Read 10 ADC samples: Avg = 35658 (-168.5 uncal um), Error = 0.9 uncal um, Median = 35658 (-168.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 35649 (-168.5 uncal um), Max = 35668 (-168.6 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 23:28:29.278 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35658, posNoise = 10, negNoise = 9
17-03-17 23:28:29.278 -07 000000610 INF: Z Motor: After move to -0.169380, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:28:29.278 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 23:28:29.278 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:28:29.278 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:28:29.278 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:28:29.278 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:28:29.278 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:28:29.278 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:28:29.278 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:28:29.278 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:28:29.278 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:28:29.278 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:28:29.278 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:28:29.278 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:28:29.288 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:28:29.288 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:28:29.288 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 23:28:29.288 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:28:29.298 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 23:28:29.298 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:28:29.298 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 23:28:29.298 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 23:28:29.308 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 476 476 229 229 37178 150\n [Camera]
17-03-17 23:28:29.498 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:28:29.978 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 668
17-03-17 23:28:29.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 668
17-03-17 23:28:29.978 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:28:29.978 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:28:29.978 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 23:28:29.978 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 668
17-03-17 23:28:29.978 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 668
17-03-17 23:28:29.978 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:28:29.978 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:28:29.978 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 23:28:30.168 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37178 861
17-03-17 23:28:30.318 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1011
17-03-17 23:28:30.358 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 23:28:30.358 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 23:28:30.358 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:28:30.358 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 23:28:30.358 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 23:28:30.358 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:28:30.358 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:28:30.358 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 23:28:30.358 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:28:30.368 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 23:28:30.548 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1240
17-03-17 23:28:30.548 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1240
17-03-17 23:28:30.548 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:28:30.548 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:28:30.548 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 23:28:30.558 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1240
17-03-17 23:28:30.558 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1240
17-03-17 23:28:30.558 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:28:30.558 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:28:30.558 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 23:28:30.738 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1433
17-03-17 23:28:30.738 -07 000000409 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:28:30.748 -07 000000610 INF: FPGA: 'CAMDBLSNAP 476 476 229 229 37178 150' command took 2 ms to send, 1429 ms to get response, and 1439 ms overall
17-03-17 23:28:30.748 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:28:30.748 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71337890625, Z-Position -0.169397908562047. ------
17-03-17 23:28:30.748 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:28:30.748 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17583 mm
17-03-17 23:28:30.748 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:28:30.748 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:28:30.758 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 38410, sync = True, waitForSettling = False)
17-03-17 23:28:30.758 -07 000000438 INF: Z Motor: Moving to -0.175830 mm, started at -0.169398 mm, distance = -6.43 um
17-03-17 23:28:30.758 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:28:30.758 -07 000000433 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 23:28:30.758 -07 000000433 INF: Y Motor: Moving to 66.5526 mm, started at 65.7134 mm, delta = 0.8392 mm
17-03-17 23:28:30.758 -07 000000438 INF: FPGA: Xmit ZDACW 38410\n [Z Motor]
17-03-17 23:28:30.758 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 23:28:30.768 -07 000000438 INF: FPGA: 'ZDACW 38410' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:30.768 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:28:30.768 -07 000000541 INF: FPGA: Recv YRDPOS 134581
17-03-17 23:28:30.778 -07 000000486 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:28:30.778 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:28:30.778 -07 000000433 INF: Y Motor: Encoder = 134581 = motor step 105141.4 = 65.7134 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:28:30.778 -07 000000433 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:28:30.778 -07 000000433 INF: Y Motor: Moving 1343 steps-19
17-03-17 23:28:30.788 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:28:30.788 -07 000000480 INF: FPGA: Recv ZDACR 38410
17-03-17 23:28:30.798 -07 000000433 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:28:30.798 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:28:30.798 -07 000000438 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-17 23:28:30.938 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 23:28:30.938 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 23:28:30.938 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:28:30.938 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 388 ms.
17-03-17 23:28:30.938 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 23:28:30.938 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:28:30.948 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:28:30.948 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:28:30.948 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 23:28:30.948 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 23:28:30.978 -07 000000618 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:28:30.978 -07 000000486 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 23:28:31.168 -07 000000448 INF: FPGA: Recv YMVTILE
17-03-17 23:28:31.168 -07 000000433 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 23:28:31.218 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:28:31.228 -07 000000618 INF: FPGA: Recv YRDPOS 136270
17-03-17 23:28:31.228 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 4 ms to get response, and 5 ms overall
17-03-17 23:28:31.228 -07 000000433 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:28:31.228 -07 000000433 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 23:28:31.228 -07 000000433 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.114 mm/sec
17-03-17 23:28:32.068 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:28:32.068 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 75. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1215, R2=1270, Total=2485. Warn if over 250 bubbles per interval.
17-03-17 23:28:32.178 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:28:32.178 -07 000000541 INF: FPGA: Recv YRDPOS 136270
17-03-17 23:28:32.188 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:32.188 -07 000000433 INF: Y Motor: Encoder = 136270 = motor step 106460.9 = 66.5381 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:28:32.208 -07 000000433 INF: Y Motor: After move to 66.552605, error = -0.014519, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:28:32.208 -07 000000433 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:28:32.208 -07 000000433 INF: Y Motor: Moved to 66.5381 after 1456 ms (table move)
17-03-17 23:28:32.218 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175830 mm (DAC = 38410)
17-03-17 23:28:32.218 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:32.218 -07 000000409 INF: FPGA: Recv ZSGSRD 36660
17-03-17 23:28:32.228 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:32.228 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:32.228 -07 000000627 INF: FPGA: Recv ZSGSRD 36662
17-03-17 23:28:32.238 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:32.248 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:32.248 -07 000000576 INF: FPGA: Recv ZSGSRD 36657
17-03-17 23:28:32.258 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:28:32.258 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:32.258 -07 000000627 INF: FPGA: Recv ZSGSRD 36662
17-03-17 23:28:32.268 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:32.268 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:32.268 -07 000000512 INF: FPGA: Recv ZSGSRD 36663
17-03-17 23:28:32.278 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:32.278 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:32.278 -07 000000459 INF: FPGA: Recv ZSGSRD 36653
17-03-17 23:28:32.288 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:32.288 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:32.288 -07 000000438 INF: FPGA: Recv ZSGSRD 36660
17-03-17 23:28:32.298 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:32.298 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:32.298 -07 000000409 INF: FPGA: Recv ZSGSRD 36649
17-03-17 23:28:32.308 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:32.308 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:32.308 -07 000000480 INF: FPGA: Recv ZSGSRD 36666
17-03-17 23:28:32.318 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:32.318 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:32.318 -07 000000541 INF: FPGA: Recv ZSGSRD 36665
17-03-17 23:28:32.328 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:32.328 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:28:32.328 -07 000000627 INF: FPGA: Recv ZPIEZORD 32807
17-03-17 23:28:32.338 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:32.338 -07 000000502 INF: Z Motor: Piezo is near 50.1 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.861 V. Piezo Error = -8.5 V.
17-03-17 23:28:32.338 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.8 um, Read 10 ADC samples: Avg = 36660 (-174.9 uncal um), Error = 0.9 uncal um, Median = 36661 (-175.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36649 (-174.9 uncal um), Max = 36666 (-175.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 23:28:32.338 -07 000000502 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36660, posNoise = 6, negNoise = 11
17-03-17 23:28:32.338 -07 000000502 INF: Z Motor: After move to -0.175830, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:28:32.338 -07 000000502 INF: Z Motor: Settle wait time = 1460 ms, measure time = 120 ms (allowed 150 ms), total time = 1580 ms
17-03-17 23:28:32.338 -07 000000502 INF: Z Motor: Waiting extra 30 ms after reading position to reach expected total of 150 ms
17-03-17 23:28:32.368 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1615 ms
17-03-17 23:28:32.368 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:28:32.368 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:28:32.368 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:28:32.368 -07 000000409 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:28:32.368 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:28:32.368 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:28:32.368 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:28:32.368 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:28:32.368 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:28:32.378 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:28:32.378 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:28:32.388 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 23:28:32.388 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 23:28:32.388 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:28:32.438 -07 000000459 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:28:32.558 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 4.031682,
17-03-17 23:28:32.638 -07 000000448 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:28:32.638 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:28:32.638 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:28:32.638 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1130172064, 0x0, 559484976) start.
17-03-17 23:28:32.678 -07 000000438 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:28:32.678 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-17 23:28:32.678 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 280 ms to get response, and 284 ms overall
17-03-17 23:28:32.758 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1130172064, 0x0, 559484976) end. Duration was 125 ms.
17-03-17 23:28:32.758 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:28:32.768 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:28:32.768 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms.
17-03-17 23:28:32.778 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:28:32.778 -07 000000409 INF: Autofocus start
17-03-17 23:28:32.778 -07 000000409 INF: MeasureProfile start
17-03-17 23:28:32.778 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:28:32.788 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:28:32.788 -07 000000433 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:28:32.788 -07 000000409 INF: MeasureProfile done
17-03-17 23:28:32.788 -07 000000409 INF: X=-48  Z correction [um]=-0.3191189
17-03-17 23:28:32.788 -07 000000409 INF: Autofocus finished
17-03-17 23:28:32.988 -07 000000459 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:28:32.988 -07 000000433 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:28:32.988 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5380859375, Z-position -0.175834969128092. ----------
17-03-17 23:28:32.988 -07 000000610 INF: Cycle	76	Tile	9	Exposure Settings		A	476	G	229	T	229	C	476
17-03-17 23:28:32.998 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36853, sync = True, waitForSettling = True)
17-03-17 23:28:32.998 -07 000000610 INF: Z Motor: Moving to -0.168702 mm, started at -0.175835 mm, distance = 7.13 um
17-03-17 23:28:32.998 -07 000000610 INF: FPGA: Xmit ZDACW 36853\n [Z Motor]
17-03-17 23:28:32.998 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 23:28:33.008 -07 000000610 INF: FPGA: 'ZDACW 36853' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:33.008 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:28:33.008 -07 000000623 INF: FPGA: Recv ZDACR 36853
17-03-17 23:28:33.018 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:33.018 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:28:33.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:33.168 -07 000000618 INF: FPGA: Recv ZSGSRD 35550
17-03-17 23:28:33.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:28:33.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:33.178 -07 000000475 INF: FPGA: Recv ZSGSRD 35548
17-03-17 23:28:33.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:33.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:33.188 -07 000000627 INF: FPGA: Recv ZSGSRD 35549
17-03-17 23:28:33.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:33.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:33.198 -07 000000627 INF: FPGA: Recv ZSGSRD 35554
17-03-17 23:28:33.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:33.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:33.208 -07 000000512 INF: FPGA: Recv ZSGSRD 35552
17-03-17 23:28:33.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:33.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:33.218 -07 000000623 INF: FPGA: Recv ZSGSRD 35557
17-03-17 23:28:33.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:33.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:33.228 -07 000000502 INF: FPGA: Recv ZSGSRD 35544
17-03-17 23:28:33.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:33.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:33.238 -07 000000541 INF: FPGA: Recv ZSGSRD 35551
17-03-17 23:28:33.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:33.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:33.248 -07 000000459 INF: FPGA: Recv ZSGSRD 35557
17-03-17 23:28:33.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:33.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:33.258 -07 000000618 INF: FPGA: Recv ZSGSRD 35553
17-03-17 23:28:33.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:33.268 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:28:33.268 -07 000000627 INF: FPGA: Recv ZPIEZORD 31321
17-03-17 23:28:33.278 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:33.278 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.623 V. Piezo Error = -9.3 V.
17-03-17 23:28:33.278 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.7 um, Read 10 ADC samples: Avg = 35552 (-167.8 uncal um), Error = 0.9 uncal um, Median = 35552 (-167.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35544 (-167.8 uncal um), Max = 35557 (-167.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 23:28:33.278 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35552, posNoise = 5, negNoise = 8
17-03-17 23:28:33.278 -07 000000610 INF: Z Motor: After move to -0.168702, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:28:33.278 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms)
17-03-17 23:28:33.278 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:28:33.278 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:28:33.278 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:28:33.278 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:28:33.278 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:28:33.278 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:28:33.278 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:28:33.278 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:28:33.278 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 23:28:33.278 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:28:33.278 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:28:33.278 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:28:33.278 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 23:28:33.278 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:28:33.288 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:28:33.288 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:28:33.288 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 23:28:33.288 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:28:33.298 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 23:28:33.298 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 23:28:33.298 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 476 476 229 229 37029 150\n [Camera]
17-03-17 23:28:33.498 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:28:33.978 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 668
17-03-17 23:28:33.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 668
17-03-17 23:28:33.978 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:28:33.978 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 668
17-03-17 23:28:33.978 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 668
17-03-17 23:28:33.978 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:28:33.978 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 23:28:33.978 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:28:33.978 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:28:33.978 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 23:28:34.168 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37029 861
17-03-17 23:28:34.318 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1011
17-03-17 23:28:34.348 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 23:28:34.348 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 23:28:34.348 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:28:34.358 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:28:34.358 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 23:28:34.358 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 23:28:34.358 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:28:34.358 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:28:34.358 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 23:28:34.358 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 23:28:34.548 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1240
17-03-17 23:28:34.548 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1240
17-03-17 23:28:34.548 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:28:34.548 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:28:34.548 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start.
17-03-17 23:28:34.548 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1240
17-03-17 23:28:34.548 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1240
17-03-17 23:28:34.548 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:28:34.548 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:28:34.548 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start.
17-03-17 23:28:34.738 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1433
17-03-17 23:28:34.738 -07 000000448 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:28:34.738 -07 000000610 INF: FPGA: 'CAMDBLSNAP 476 476 229 229 37029 150' command took 2 ms to send, 1433 ms to get response, and 1440 ms overall
17-03-17 23:28:34.868 -07 000000610 INF: Skipping AutoFocus in Tile 10: adopting Best-Z from the cache: -0.169569
17-03-17 23:28:34.868 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.16957 mm
17-03-17 23:28:34.868 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:28:34.868 -07 000000475 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 23:28:34.868 -07 000000475 INF: Y Motor: Moving to 67.3826 mm, started at 66.5381 mm, delta = 0.8445 mm
17-03-17 23:28:34.868 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:28:34.878 -07 000000541 INF: Z Motor: Entering MoveAbsStepped (DAC = 37042, sync = True, waitForSettling = False)
17-03-17 23:28:34.878 -07 000000541 INF: Z Motor: Moving to -0.169567 mm, started at -0.168717 mm, distance = -0.85 um
17-03-17 23:28:34.878 -07 000000502 INF: FPGA: Recv YRDPOS 136271
17-03-17 23:28:34.888 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:28:34.888 -07 000000475 INF: Y Motor: Encoder = 136271 = motor step 106461.7 = 66.5386 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:28:34.888 -07 000000541 INF: FPGA: Xmit ZDACW 37042\n [Z Motor]
17-03-17 23:28:34.888 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 23:28:34.888 -07 000000475 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:28:34.888 -07 000000475 INF: Y Motor: Moving 1350 steps-30
17-03-17 23:28:34.898 -07 000000541 INF: FPGA: 'ZDACW 37042' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:28:34.898 -07 000000541 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:28:34.898 -07 000000561 INF: FPGA: Recv ZDACR 37042
17-03-17 23:28:34.908 -07 000000475 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:28:34.908 -07 000000541 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:34.908 -07 000000541 INF: Z Motor: MoveAbsStepped took 29 ms (did NOT wait for settling yet))
17-03-17 23:28:34.948 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 401 ms.
17-03-17 23:28:34.948 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms.
17-03-17 23:28:34.948 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:28:34.948 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 399 ms.
17-03-17 23:28:34.948 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms.
17-03-17 23:28:34.948 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:28:34.948 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:28:34.958 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 23:28:34.958 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms.
17-03-17 23:28:34.958 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms.
17-03-17 23:28:35.278 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-17 23:28:35.278 -07 000000475 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall
17-03-17 23:28:35.328 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:28:35.328 -07 000000409 INF: FPGA: Recv YRDPOS 137977
17-03-17 23:28:35.338 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:35.338 -07 000000475 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:28:35.338 -07 000000475 INF: Y Motor: Position error before settling (table move) = -23 encoder counts (-0.011 mm)
17-03-17 23:28:35.338 -07 000000475 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.845 mm, average velocity = 2.143 mm/sec
17-03-17 23:28:36.288 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:28:36.288 -07 000000433 INF: FPGA: Recv YRDPOS 137977
17-03-17 23:28:36.298 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:28:36.298 -07 000000475 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:28:36.318 -07 000000475 INF: Y Motor: After move to 67.382607, error = -0.011024, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:28:36.318 -07 000000475 INF: Y Motor: Position error after settling (table move) = -23 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:28:36.318 -07 000000475 INF: Y Motor: Moved to 67.3716 after 1446 ms (table move)
17-03-17 23:28:36.318 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.169567 mm (DAC = 37042)
17-03-17 23:28:36.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:36.328 -07 000000623 INF: FPGA: Recv ZSGSRD 35676
17-03-17 23:28:36.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 5 ms to get response, and 6 ms overall
17-03-17 23:28:36.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:36.328 -07 000000502 INF: FPGA: Recv ZSGSRD 35688
17-03-17 23:28:36.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:28:36.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:36.338 -07 000000618 INF: FPGA: Recv ZSGSRD 35685
17-03-17 23:28:36.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:36.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:36.348 -07 000000541 INF: FPGA: Recv ZSGSRD 35695
17-03-17 23:28:36.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:36.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:36.358 -07 000000623 INF: FPGA: Recv ZSGSRD 35692
17-03-17 23:28:36.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:36.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:36.368 -07 000000502 INF: FPGA: Recv ZSGSRD 35684
17-03-17 23:28:36.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:36.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:36.378 -07 000000433 INF: FPGA: Recv ZSGSRD 35683
17-03-17 23:28:36.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:36.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:36.388 -07 000000541 INF: FPGA: Recv ZSGSRD 35674
17-03-17 23:28:36.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:36.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:36.398 -07 000000623 INF: FPGA: Recv ZSGSRD 35683
17-03-17 23:28:36.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:36.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:36.408 -07 000000576 INF: FPGA: Recv ZSGSRD 35691
17-03-17 23:28:36.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:36.418 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:28:36.418 -07 000000433 INF: FPGA: Recv ZPIEZORD 31557
17-03-17 23:28:36.428 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:36.428 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.652 V. Piezo Error = -9.1 V.
17-03-17 23:28:36.428 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.6 um, Read 10 ADC samples: Avg = 35685 (-168.7 uncal um), Error = 0.9 uncal um, Median = 35684 (-168.7 uncal um), StdDev = 7 (0.0 uncal um), Range = 21 (0.1 uncal um), Min = 35674 (-168.6 uncal um), Max = 35695 (-168.8 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 23:28:36.428 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35685, posNoise = 10, negNoise = 11
17-03-17 23:28:36.428 -07 000000610 INF: Z Motor: After move to -0.169567, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:28:36.428 -07 000000610 INF: Z Motor: Settle wait time = 1448 ms, measure time = 102 ms (allowed 150 ms), total time = 1550 ms
17-03-17 23:28:36.428 -07 000000610 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 23:28:36.478 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-17 23:28:36.478 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:28:36.478 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37158203125, Z-position -0.169571362289875. ----------
17-03-17 23:28:36.478 -07 000000610 INF: Cycle	76	Tile	10	Exposure Settings		A	476	G	229	T	229	C	476
17-03-17 23:28:36.478 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36866, sync = True, waitForSettling = True)
17-03-17 23:28:36.478 -07 000000610 INF: Z Motor: Moving to -0.168762 mm, started at -0.169571 mm, distance = 0.81 um
17-03-17 23:28:36.478 -07 000000610 INF: FPGA: Xmit ZDACW 36866\n [Z Motor]
17-03-17 23:28:36.478 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 23:28:36.488 -07 000000610 INF: FPGA: 'ZDACW 36866' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:28:36.488 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:28:36.488 -07 000000561 INF: FPGA: Recv ZDACR 36866
17-03-17 23:28:36.498 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:36.498 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:28:36.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:36.648 -07 000000623 INF: FPGA: Recv ZSGSRD 35558
17-03-17 23:28:36.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:28:36.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:36.658 -07 000000480 INF: FPGA: Recv ZSGSRD 35562
17-03-17 23:28:36.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:36.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:36.668 -07 000000438 INF: FPGA: Recv ZSGSRD 35561
17-03-17 23:28:36.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:36.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:36.678 -07 000000459 INF: FPGA: Recv ZSGSRD 35565
17-03-17 23:28:36.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:36.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:36.688 -07 000000502 INF: FPGA: Recv ZSGSRD 35562
17-03-17 23:28:36.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:36.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:36.698 -07 000000618 INF: FPGA: Recv ZSGSRD 35559
17-03-17 23:28:36.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:36.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:36.708 -07 000000486 INF: FPGA: Recv ZSGSRD 35562
17-03-17 23:28:36.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:36.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:36.718 -07 000000561 INF: FPGA: Recv ZSGSRD 35556
17-03-17 23:28:36.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:36.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:36.728 -07 000000512 INF: FPGA: Recv ZSGSRD 35554
17-03-17 23:28:36.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:36.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:36.738 -07 000000627 INF: FPGA: Recv ZSGSRD 35558
17-03-17 23:28:36.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:36.748 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:28:36.748 -07 000000438 INF: FPGA: Recv ZPIEZORD 31364
17-03-17 23:28:36.758 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:36.758 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.625 V. Piezo Error = -9.3 V.
17-03-17 23:28:36.758 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.8 um, Read 10 ADC samples: Avg = 35560 (-167.9 uncal um), Error = 0.9 uncal um, Median = 35560 (-167.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35554 (-167.9 uncal um), Max = 35565 (-167.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:28:36.758 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35560, posNoise = 5, negNoise = 6
17-03-17 23:28:36.758 -07 000000610 INF: Z Motor: After move to -0.168762, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:28:36.758 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 23:28:36.758 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:28:36.758 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:28:36.758 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:28:36.758 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:28:36.758 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:28:36.758 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:28:36.758 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:28:36.758 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:28:36.758 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:28:36.758 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 23:28:36.758 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:28:36.758 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:28:36.768 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:28:36.768 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:28:36.768 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 23:28:36.768 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:28:36.778 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 23:28:36.778 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 16 ms.
17-03-17 23:28:36.778 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 23:28:36.778 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 23:28:36.778 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 476 476 229 229 37042 150\n [Camera]
17-03-17 23:28:36.978 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:28:37.068 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:28:37.068 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 75. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1215, R2=1270, Total=2485. Warn if over 250 bubbles per interval.
17-03-17 23:28:37.458 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 668
17-03-17 23:28:37.458 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 668
17-03-17 23:28:37.458 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:28:37.458 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 668
17-03-17 23:28:37.458 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 668
17-03-17 23:28:37.458 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:28:37.458 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:28:37.468 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 23:28:37.468 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:28:37.468 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 23:28:37.648 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37042 861
17-03-17 23:28:37.798 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1011
17-03-17 23:28:37.838 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 23:28:37.838 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 23:28:37.838 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:28:37.838 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 23:28:37.838 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 23:28:37.838 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:28:37.838 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:28:37.848 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:28:37.848 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 23:28:37.848 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 23:28:37.918 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 4.05891,
17-03-17 23:28:38.028 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1240
17-03-17 23:28:38.028 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1240
17-03-17 23:28:38.028 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:28:38.028 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:28:38.028 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1145516880, 0x0, 391868352) start.
17-03-17 23:28:38.028 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1240
17-03-17 23:28:38.028 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1240
17-03-17 23:28:38.028 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:28:38.028 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:28:38.028 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) start.
17-03-17 23:28:38.218 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP 1433
17-03-17 23:28:38.218 -07 000000541 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:28:38.218 -07 000000610 INF: FPGA: 'CAMDBLSNAP 476 476 229 229 37042 150' command took 2 ms to send, 1434 ms to get response, and 1440 ms overall
17-03-17 23:28:38.218 -07 000000610 INF: Skipping AutoFocus in Tile 11: adopting Best-Z from the cache: -0.169102
17-03-17 23:28:38.218 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.16910 mm
17-03-17 23:28:38.218 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:28:38.218 -07 000000475 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 23:28:38.218 -07 000000475 INF: Y Motor: Moving to 68.2126 mm, started at 67.3716 mm, delta = 0.8410 mm
17-03-17 23:28:38.218 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:28:38.218 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 36940, sync = True, waitForSettling = False)
17-03-17 23:28:38.218 -07 000000623 INF: Z Motor: Moving to -0.169100 mm, started at -0.168768 mm, distance = -0.33 um
17-03-17 23:28:38.228 -07 000000623 INF: FPGA: Xmit ZDACW 36940\n [Z Motor]
17-03-17 23:28:38.228 -07 000000448 INF: FPGA: Recv YRDPOS 137977
17-03-17 23:28:38.228 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 5 ms to get response, and 6 ms overall
17-03-17 23:28:38.228 -07 000000475 INF: Y Motor: Encoder = 137977 = motor step 107794.5 = 67.3716 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:28:38.228 -07 000000475 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:28:38.228 -07 000000475 INF: Y Motor: Moving 1346 steps-23
17-03-17 23:28:38.228 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 23:28:38.238 -07 000000475 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:28:38.238 -07 000000623 INF: FPGA: 'ZDACW 36940' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:28:38.248 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:28:38.248 -07 000000459 INF: FPGA: Recv ZDACR 36940
17-03-17 23:28:38.258 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:28:38.258 -07 000000623 INF: Z Motor: MoveAbsStepped took 30 ms (did NOT wait for settling yet))
17-03-17 23:28:38.418 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2486767776, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 23:28:38.418 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 23:28:38.418 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:28:38.418 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1145516880, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 23:28:38.418 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 23:28:38.418 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:28:38.418 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:28:38.418 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:28:38.418 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 23:28:38.428 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 23:28:38.608 -07 000000448 INF: FPGA: Recv YMVTILE
17-03-17 23:28:38.608 -07 000000475 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 382 ms overall
17-03-17 23:28:38.648 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:28:38.658 -07 000000627 INF: FPGA: Recv YRDPOS 139682
17-03-17 23:28:38.658 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 23:28:38.658 -07 000000475 INF: Y Motor: Encoder = 139682 = motor step 109126.6 = 68.2041 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:28:38.658 -07 000000475 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 23:28:38.658 -07 000000475 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 382 ms, distance = 0.841 mm, average velocity = 2.202 mm/sec
17-03-17 23:28:39.608 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:28:39.608 -07 000000618 INF: FPGA: Recv YRDPOS 139683
17-03-17 23:28:39.618 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:39.618 -07 000000475 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:28:39.638 -07 000000475 INF: Y Motor: After move to 68.212608, error = -0.008018, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:28:39.638 -07 000000475 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 23:28:39.638 -07 000000475 INF: Y Motor: Moved to 68.2046 after 1416 ms (table move)
17-03-17 23:28:39.638 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.169100 mm (DAC = 36940)
17-03-17 23:28:39.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:39.648 -07 000000623 INF: FPGA: Recv ZSGSRD 35608
17-03-17 23:28:39.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 23:28:39.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:39.648 -07 000000433 INF: FPGA: Recv ZSGSRD 35609
17-03-17 23:28:39.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:39.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:39.658 -07 000000541 INF: FPGA: Recv ZSGSRD 35616
17-03-17 23:28:39.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:39.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:39.668 -07 000000459 INF: FPGA: Recv ZSGSRD 35620
17-03-17 23:28:39.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:39.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:39.678 -07 000000480 INF: FPGA: Recv ZSGSRD 35617
17-03-17 23:28:39.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:39.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:39.688 -07 000000448 INF: FPGA: Recv ZSGSRD 35613
17-03-17 23:28:39.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:39.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:39.698 -07 000000541 INF: FPGA: Recv ZSGSRD 35613
17-03-17 23:28:39.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:39.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:39.708 -07 000000576 INF: FPGA: Recv ZSGSRD 35611
17-03-17 23:28:39.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:39.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:39.718 -07 000000623 INF: FPGA: Recv ZSGSRD 35608
17-03-17 23:28:39.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:39.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:39.728 -07 000000433 INF: FPGA: Recv ZSGSRD 35612
17-03-17 23:28:39.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:39.738 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:28:39.738 -07 000000475 INF: FPGA: Recv ZPIEZORD 31459
17-03-17 23:28:39.748 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:39.748 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.637 V. Piezo Error = -9.2 V.
17-03-17 23:28:39.748 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.1 um, Read 10 ADC samples: Avg = 35613 (-168.2 uncal um), Error = 0.9 uncal um, Median = 35612 (-168.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35608 (-168.2 uncal um), Max = 35620 (-168.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:28:39.748 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35613, posNoise = 7, negNoise = 5
17-03-17 23:28:39.748 -07 000000610 INF: Z Motor: After move to -0.169100, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:28:39.748 -07 000000610 INF: Z Motor: Settle wait time = 1417 ms, measure time = 104 ms (allowed 150 ms), total time = 1521 ms
17-03-17 23:28:39.748 -07 000000610 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 23:28:39.798 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1573 ms
17-03-17 23:28:39.798 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:28:39.798 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20458984375, Z-position -0.169108819015668. ----------
17-03-17 23:28:39.798 -07 000000610 INF: Cycle	76	Tile	11	Exposure Settings		A	476	G	229	T	229	C	476
17-03-17 23:28:39.798 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36764, sync = True, waitForSettling = True)
17-03-17 23:28:39.798 -07 000000610 INF: Z Motor: Moving to -0.168295 mm, started at -0.169109 mm, distance = 0.81 um
17-03-17 23:28:39.798 -07 000000610 INF: FPGA: Xmit ZDACW 36764\n [Z Motor]
17-03-17 23:28:39.798 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 23:28:39.808 -07 000000610 INF: FPGA: 'ZDACW 36764' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:28:39.808 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:28:39.808 -07 000000459 INF: FPGA: Recv ZDACR 36764
17-03-17 23:28:39.818 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:39.818 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:28:39.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:39.968 -07 000000448 INF: FPGA: Recv ZSGSRD 35485
17-03-17 23:28:39.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:28:39.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:39.978 -07 000000576 INF: FPGA: Recv ZSGSRD 35494
17-03-17 23:28:39.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:39.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:39.988 -07 000000576 INF: FPGA: Recv ZSGSRD 35490
17-03-17 23:28:39.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:39.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:39.998 -07 000000561 INF: FPGA: Recv ZSGSRD 35491
17-03-17 23:28:40.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:40.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:40.008 -07 000000512 INF: FPGA: Recv ZSGSRD 35487
17-03-17 23:28:40.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:40.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:40.018 -07 000000627 INF: FPGA: Recv ZSGSRD 35485
17-03-17 23:28:40.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:40.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:40.028 -07 000000480 INF: FPGA: Recv ZSGSRD 35485
17-03-17 23:28:40.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:40.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:40.038 -07 000000438 INF: FPGA: Recv ZSGSRD 35483
17-03-17 23:28:40.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:40.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:40.048 -07 000000448 INF: FPGA: Recv ZSGSRD 35495
17-03-17 23:28:40.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:40.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:40.058 -07 000000433 INF: FPGA: Recv ZSGSRD 35492
17-03-17 23:28:40.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:40.068 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:28:40.068 -07 000000576 INF: FPGA: Recv ZPIEZORD 31294
17-03-17 23:28:40.078 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:40.078 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.610 V. Piezo Error = -9.2 V.
17-03-17 23:28:40.078 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.3 um, Read 10 ADC samples: Avg = 35489 (-167.4 uncal um), Error = 0.9 uncal um, Median = 35488 (-167.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35483 (-167.4 uncal um), Max = 35495 (-167.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:28:40.078 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35489, posNoise = 6, negNoise = 6
17-03-17 23:28:40.078 -07 000000610 INF: Z Motor: After move to -0.168295, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:28:40.078 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 23:28:40.078 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:28:40.078 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:28:40.078 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:28:40.078 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:28:40.078 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:28:40.078 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:28:40.078 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:28:40.078 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:28:40.078 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:28:40.078 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:28:40.078 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:28:40.078 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:28:40.088 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:28:40.088 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:28:40.088 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:28:40.088 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:28:40.098 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 23:28:40.098 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:28:40.098 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 23:28:40.098 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:28:40.098 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 476 476 229 229 36940 150\n [Camera]
17-03-17 23:28:40.298 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:28:40.768 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 668
17-03-17 23:28:40.768 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 668
17-03-17 23:28:40.778 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:28:40.778 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:28:40.778 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 23:28:40.778 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 668
17-03-17 23:28:40.778 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 668
17-03-17 23:28:40.778 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:28:40.898 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:28:40.898 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 23:28:40.968 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36940 861
17-03-17 23:28:41.118 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1011
17-03-17 23:28:41.158 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 23:28:41.158 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 23:28:41.158 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:28:41.158 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:28:41.158 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 23:28:41.278 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 23:28:41.278 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 23:28:41.278 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:28:41.278 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:28:41.288 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 507 ms.
17-03-17 23:28:41.348 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1240
17-03-17 23:28:41.348 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1240
17-03-17 23:28:41.348 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:28:41.348 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1240
17-03-17 23:28:41.348 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1240
17-03-17 23:28:41.348 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:28:41.348 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:28:41.348 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1145516880, 0x0, 418435064) start.
17-03-17 23:28:41.348 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:28:41.348 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 23:28:41.538 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1433
17-03-17 23:28:41.538 -07 000000459 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:28:41.538 -07 000000610 INF: FPGA: 'CAMDBLSNAP 476 476 229 229 36940 150' command took 2 ms to send, 1432 ms to get response, and 1439 ms overall
17-03-17 23:28:41.538 -07 000000610 INF: Skipping AutoFocus in Tile 12: adopting Best-Z from the cache: -0.168804
17-03-17 23:28:41.538 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.16880 mm
17-03-17 23:28:41.538 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:28:41.538 -07 000000409 INF: Z Motor: Entering MoveAbsStepped (DAC = 36875, sync = True, waitForSettling = False)
17-03-17 23:28:41.538 -07 000000409 INF: Z Motor: Moving to -0.168803 mm, started at -0.168312 mm, distance = -0.49 um
17-03-17 23:28:41.538 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 23:28:41.538 -07 000000576 INF: Y Motor: Moving to 69.0426 mm, started at 68.2046 mm, delta = 0.8380 mm
17-03-17 23:28:41.538 -07 000000409 INF: FPGA: Xmit ZDACW 36875\n [Z Motor]
17-03-17 23:28:41.548 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:28:41.548 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 23:28:41.548 -07 000000409 INF: FPGA: 'ZDACW 36875' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 23:28:41.548 -07 000000541 INF: FPGA: Recv YRDPOS 139683
17-03-17 23:28:41.558 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 23:28:41.558 -07 000000576 INF: Y Motor: Encoder = 139683 = motor step 109127.3 = 68.2046 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:28:41.558 -07 000000576 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:28:41.558 -07 000000576 INF: Y Motor: Moving 1341 steps-17
17-03-17 23:28:41.558 -07 000000409 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:28:41.558 -07 000000561 INF: FPGA: Recv ZDACR 36875
17-03-17 23:28:41.568 -07 000000409 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 23:28:41.568 -07 000000409 INF: Z Motor: MoveAbsStepped took 21 ms (did NOT wait for settling yet))
17-03-17 23:28:41.568 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:28:41.728 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 23:28:41.728 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 23:28:41.728 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:28:41.728 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1145516880, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 23:28:41.728 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 23:28:41.728 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:28:41.728 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:28:41.728 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 23:28:41.738 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:28:41.738 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms.
17-03-17 23:28:41.938 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-17 23:28:41.938 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-17 23:28:41.978 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:28:41.988 -07 000000433 INF: FPGA: Recv YRDPOS 141366
17-03-17 23:28:41.988 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 23:28:41.988 -07 000000576 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:28:41.988 -07 000000576 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-17 23:28:41.988 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.838 mm, average velocity = 2.171 mm/sec
17-03-17 23:28:42.068 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:28:42.068 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 75. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1215, R2=1270, Total=2485. Warn if over 250 bubbles per interval.
17-03-17 23:28:42.938 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:28:42.938 -07 000000541 INF: FPGA: Recv YRDPOS 141366
17-03-17 23:28:42.948 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:42.948 -07 000000576 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:28:42.968 -07 000000576 INF: Y Motor: After move to 69.042610, error = -0.016243, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:28:42.968 -07 000000576 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:28:42.968 -07 000000576 INF: Y Motor: Moved to 69.0264 after 1429 ms (table move)
17-03-17 23:28:42.978 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.168803 mm (DAC = 36875)
17-03-17 23:28:42.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:42.978 -07 000000433 INF: FPGA: Recv ZSGSRD 35571
17-03-17 23:28:42.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:42.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:42.988 -07 000000541 INF: FPGA: Recv ZSGSRD 35571
17-03-17 23:28:42.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:42.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:42.998 -07 000000438 INF: FPGA: Recv ZSGSRD 35569
17-03-17 23:28:43.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:43.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:43.008 -07 000000623 INF: FPGA: Recv ZSGSRD 35566
17-03-17 23:28:43.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:43.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:43.018 -07 000000475 INF: FPGA: Recv ZSGSRD 35568
17-03-17 23:28:43.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:43.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:43.028 -07 000000438 INF: FPGA: Recv ZSGSRD 35565
17-03-17 23:28:43.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:43.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:43.038 -07 000000502 INF: FPGA: Recv ZSGSRD 35563
17-03-17 23:28:43.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:43.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:43.048 -07 000000618 INF: FPGA: Recv ZSGSRD 35570
17-03-17 23:28:43.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:43.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:43.058 -07 000000627 INF: FPGA: Recv ZSGSRD 35565
17-03-17 23:28:43.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:43.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:43.068 -07 000000448 INF: FPGA: Recv ZSGSRD 35571
17-03-17 23:28:43.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:43.078 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:28:43.078 -07 000000576 INF: FPGA: Recv ZPIEZORD 31390
17-03-17 23:28:43.088 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:43.088 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.627 V. Piezo Error = -9.2 V.
17-03-17 23:28:43.088 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.8 um, Read 10 ADC samples: Avg = 35568 (-167.9 uncal um), Error = 0.9 uncal um, Median = 35568 (-167.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35563 (-167.9 uncal um), Max = 35571 (-168.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:28:43.088 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35568, posNoise = 3, negNoise = 5
17-03-17 23:28:43.088 -07 000000610 INF: Z Motor: After move to -0.168803, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:28:43.088 -07 000000610 INF: Z Motor: Settle wait time = 1431 ms, measure time = 111 ms (allowed 150 ms), total time = 1542 ms
17-03-17 23:28:43.088 -07 000000610 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 23:28:43.128 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1584 ms
17-03-17 23:28:43.128 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:28:43.128 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.0263671875, Z-position -0.168819729469289. ----------
17-03-17 23:28:43.128 -07 000000610 INF: Cycle	76	Tile	12	Exposure Settings		A	476	G	229	T	229	C	476
17-03-17 23:28:43.128 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36698, sync = True, waitForSettling = True)
17-03-17 23:28:43.128 -07 000000610 INF: Z Motor: Moving to -0.167993 mm, started at -0.168820 mm, distance = 0.83 um
17-03-17 23:28:43.128 -07 000000610 INF: FPGA: Xmit ZDACW 36698\n [Z Motor]
17-03-17 23:28:43.128 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 23:28:43.138 -07 000000610 INF: FPGA: 'ZDACW 36698' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:28:43.138 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:28:43.138 -07 000000480 INF: FPGA: Recv ZDACR 36698
17-03-17 23:28:43.148 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:43.148 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:28:43.278 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 4.031682,
17-03-17 23:28:43.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:43.298 -07 000000409 INF: FPGA: Recv ZSGSRD 35442
17-03-17 23:28:43.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:43.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:43.308 -07 000000541 INF: FPGA: Recv ZSGSRD 35449
17-03-17 23:28:43.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:43.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:43.338 -07 000000618 INF: FPGA: Recv ZSGSRD 35443
17-03-17 23:28:43.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:28:43.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:43.348 -07 000000486 INF: FPGA: Recv ZSGSRD 35439
17-03-17 23:28:43.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:43.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:43.358 -07 000000541 INF: FPGA: Recv ZSGSRD 35436
17-03-17 23:28:43.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:43.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:43.368 -07 000000459 INF: FPGA: Recv ZSGSRD 35437
17-03-17 23:28:43.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:43.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:43.378 -07 000000623 INF: FPGA: Recv ZSGSRD 35443
17-03-17 23:28:43.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:43.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:43.388 -07 000000409 INF: FPGA: Recv ZSGSRD 35442
17-03-17 23:28:43.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:43.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:43.398 -07 000000448 INF: FPGA: Recv ZSGSRD 35444
17-03-17 23:28:43.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:43.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:43.408 -07 000000475 INF: FPGA: Recv ZSGSRD 35444
17-03-17 23:28:43.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:43.418 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:28:43.418 -07 000000627 INF: FPGA: Recv ZPIEZORD 31239
17-03-17 23:28:43.428 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:43.428 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.600 V. Piezo Error = -9.3 V.
17-03-17 23:28:43.428 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.0 um, Read 10 ADC samples: Avg = 35442 (-167.1 uncal um), Error = 0.9 uncal um, Median = 35442 (-167.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35436 (-167.1 uncal um), Max = 35449 (-167.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:28:43.428 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35442, posNoise = 7, negNoise = 6
17-03-17 23:28:43.428 -07 000000610 INF: Z Motor: After move to -0.167993, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:28:43.428 -07 000000610 INF: Z Motor: MoveAbsStepped took 296 ms)
17-03-17 23:28:43.428 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:28:43.428 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:28:43.428 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:28:43.428 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:28:43.428 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:28:43.428 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:28:43.428 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:28:43.428 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:28:43.428 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:28:43.428 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:28:43.428 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:28:43.428 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:28:43.438 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 23:28:43.438 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:28:43.438 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:28:43.438 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:28:43.448 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 23:28:43.448 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 23:28:43.448 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 23:28:43.448 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:28:43.468 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 476 476 229 229 36875 150\n [Camera]
17-03-17 23:28:43.668 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 194
17-03-17 23:28:44.138 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 668
17-03-17 23:28:44.138 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 668
17-03-17 23:28:44.138 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:28:44.138 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:28:44.138 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 23:28:44.138 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 668
17-03-17 23:28:44.138 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 668
17-03-17 23:28:44.148 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:28:44.148 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:28:44.148 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 23:28:44.328 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36875 861
17-03-17 23:28:44.478 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1011
17-03-17 23:28:44.518 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 23:28:44.518 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 23:28:44.518 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:28:44.518 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 23:28:44.518 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 23:28:44.518 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:28:44.518 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:28:44.518 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 23:28:44.528 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:28:44.528 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 23:28:44.708 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1240
17-03-17 23:28:44.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1240
17-03-17 23:28:44.708 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:28:44.708 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:28:44.708 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 23:28:44.718 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1240
17-03-17 23:28:44.718 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1240
17-03-17 23:28:44.718 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:28:44.868 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:28:44.868 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 23:28:44.898 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP 1433
17-03-17 23:28:44.908 -07 000000433 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:28:44.908 -07 000000610 INF: FPGA: 'CAMDBLSNAP 476 476 229 229 36875 150' command took 2 ms to send, 1430 ms to get response, and 1449 ms overall
17-03-17 23:28:44.908 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:28:44.908 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.0263671875, Z-Position -0.168010278739427. ------
17-03-17 23:28:44.908 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:28:44.908 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17439 mm
17-03-17 23:28:44.908 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:28:44.908 -07 000000561 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:28:44.908 -07 000000433 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 23:28:44.908 -07 000000433 INF: Y Motor: Moving to 69.8726 mm, started at 69.0264 mm, delta = 0.8462 mm
17-03-17 23:28:44.918 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:28:44.918 -07 000000475 INF: Z Motor: Entering MoveAbsStepped (DAC = 38096, sync = True, waitForSettling = False)
17-03-17 23:28:44.918 -07 000000475 INF: Z Motor: Moving to -0.174392 mm, started at -0.168010 mm, distance = -6.38 um
17-03-17 23:28:44.918 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:28:44.918 -07 000000561 INF: FPGA: Recv YRDPOS 141366
17-03-17 23:28:44.928 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:44.928 -07 000000433 INF: Y Motor: Encoder = 141366 = motor step 110442.2 = 69.0264 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:28:44.928 -07 000000433 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:28:44.928 -07 000000433 INF: Y Motor: Moving 1354 steps-33
17-03-17 23:28:44.928 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:28:44.938 -07 000000475 INF: FPGA: Xmit ZDACW 38096\n [Z Motor]
17-03-17 23:28:44.938 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 23:28:44.948 -07 000000433 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:28:44.948 -07 000000475 INF: FPGA: 'ZDACW 38096' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:28:44.958 -07 000000475 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:28:44.958 -07 000000541 INF: FPGA: Recv ZDACR 38096
17-03-17 23:28:44.968 -07 000000475 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:28:44.968 -07 000000475 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 23:28:45.098 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 23:28:45.098 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 23:28:45.098 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:28:45.098 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:28:45.098 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 23:28:45.128 -07 000000561 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:28:45.128 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 197 ms to get response, and 215 ms overall
17-03-17 23:28:45.248 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 23:28:45.248 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 23:28:45.248 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:28:45.248 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:28:45.258 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 538 ms.
17-03-17 23:28:45.318 -07 000000541 INF: FPGA: Recv YMVTILE
17-03-17 23:28:45.318 -07 000000433 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 23:28:45.368 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:28:45.368 -07 000000623 INF: FPGA: Recv YRDPOS 143078
17-03-17 23:28:45.378 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:45.378 -07 000000433 INF: Y Motor: Encoder = 143078 = motor step 111779.7 = 69.8623 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:28:45.378 -07 000000433 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm)
17-03-17 23:28:45.378 -07 000000433 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.846 mm, average velocity = 2.126 mm/sec
17-03-17 23:28:46.328 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:28:46.328 -07 000000618 INF: FPGA: Recv YRDPOS 143079
17-03-17 23:28:46.338 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:28:46.338 -07 000000433 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:28:46.358 -07 000000433 INF: Y Motor: After move to 69.872612, error = -0.009819, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:28:46.358 -07 000000433 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 23:28:46.358 -07 000000433 INF: Y Motor: Moved to 69.8628 after 1446 ms (table move)
17-03-17 23:28:46.358 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174392 mm (DAC = 38096)
17-03-17 23:28:46.358 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:46.368 -07 000000623 INF: FPGA: Recv ZSGSRD 36445
17-03-17 23:28:46.368 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 23:28:46.368 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:46.368 -07 000000448 INF: FPGA: Recv ZSGSRD 36436
17-03-17 23:28:46.378 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:28:46.378 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:46.378 -07 000000623 INF: FPGA: Recv ZSGSRD 36434
17-03-17 23:28:46.388 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:28:46.388 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:46.388 -07 000000438 INF: FPGA: Recv ZSGSRD 36439
17-03-17 23:28:46.398 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:46.398 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:46.398 -07 000000576 INF: FPGA: Recv ZSGSRD 36437
17-03-17 23:28:46.408 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:46.408 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:46.408 -07 000000512 INF: FPGA: Recv ZSGSRD 36436
17-03-17 23:28:46.418 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:46.418 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:46.418 -07 000000433 INF: FPGA: Recv ZSGSRD 36439
17-03-17 23:28:46.428 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:46.428 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:46.428 -07 000000627 INF: FPGA: Recv ZSGSRD 36430
17-03-17 23:28:46.438 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:46.438 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:46.438 -07 000000459 INF: FPGA: Recv ZSGSRD 36432
17-03-17 23:28:46.448 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:46.448 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:46.448 -07 000000502 INF: FPGA: Recv ZSGSRD 36439
17-03-17 23:28:46.458 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:46.458 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:28:46.458 -07 000000541 INF: FPGA: Recv ZPIEZORD 32560
17-03-17 23:28:46.468 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:46.468 -07 000000480 INF: Z Motor: Piezo is near 49.6 V (nominally 0 to 100 V), expect near 58.1 V, since DAC is at 5.813 V. Piezo Error = -8.6 V.
17-03-17 23:28:46.468 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.4 um, Read 10 ADC samples: Avg = 36437 (-173.5 uncal um), Error = 0.9 uncal um, Median = 36436 (-173.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36430 (-173.5 uncal um), Max = 36445 (-173.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 23:28:46.468 -07 000000480 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36437, posNoise = 8, negNoise = 7
17-03-17 23:28:46.468 -07 000000480 INF: Z Motor: After move to -0.174392, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:28:46.468 -07 000000480 INF: Z Motor: Settle wait time = 1448 ms, measure time = 102 ms (allowed 150 ms), total time = 1550 ms
17-03-17 23:28:46.468 -07 000000480 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 23:28:46.518 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1603 ms
17-03-17 23:28:46.518 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:28:46.518 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:28:46.518 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:28:46.518 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:28:46.518 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:28:46.518 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:28:46.518 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:28:46.518 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 23:28:46.518 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:28:46.528 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms.
17-03-17 23:28:46.528 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:28:46.538 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 23:28:46.538 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 23:28:46.538 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:28:46.578 -07 000000541 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:28:46.778 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:28:46.778 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:28:46.778 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:28:46.788 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-17 23:28:46.818 -07 000000459 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:28:46.818 -07 000000409 INF: FPGA: Recv CAMSNAP
17-03-17 23:28:46.818 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 285 ms overall
17-03-17 23:28:46.908 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 127 ms.
17-03-17 23:28:46.908 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:28:46.908 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:28:46.908 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 23:28:47.018 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:28:47.018 -07 000000438 INF: Autofocus start
17-03-17 23:28:47.018 -07 000000438 INF: MeasureProfile start
17-03-17 23:28:47.018 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:28:47.028 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:28:47.028 -07 000000433 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:28:47.028 -07 000000438 INF: MeasureProfile done
17-03-17 23:28:47.028 -07 000000438 INF: X=16  Z correction [um]=0.01042744
17-03-17 23:28:47.028 -07 000000438 INF: Autofocus finished
17-03-17 23:28:47.068 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:28:47.068 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 75. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1215, R2=1270, Total=2485. Warn if over 250 bubbles per interval.
17-03-17 23:28:47.228 -07 000000561 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:28:47.238 -07 000000433 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 201 ms to get response, and 211 ms overall
17-03-17 23:28:47.238 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86279296875, Z-position -0.174402369820479. ----------
17-03-17 23:28:47.238 -07 000000610 INF: Cycle	76	Tile	13	Exposure Settings		A	476	G	229	T	229	C	476
17-03-17 23:28:47.248 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36611, sync = True, waitForSettling = True)
17-03-17 23:28:47.248 -07 000000610 INF: Z Motor: Moving to -0.167594 mm, started at -0.174402 mm, distance = 6.81 um
17-03-17 23:28:47.248 -07 000000610 INF: FPGA: Xmit ZDACW 36611\n [Z Motor]
17-03-17 23:28:47.248 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 23:28:47.258 -07 000000610 INF: FPGA: 'ZDACW 36611' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:47.258 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:28:47.258 -07 000000459 INF: FPGA: Recv ZDACR 36611
17-03-17 23:28:47.268 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:47.268 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:28:47.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:47.418 -07 000000448 INF: FPGA: Recv ZSGSRD 35379
17-03-17 23:28:47.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:28:47.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:47.428 -07 000000433 INF: FPGA: Recv ZSGSRD 35377
17-03-17 23:28:47.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:47.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:47.438 -07 000000480 INF: FPGA: Recv ZSGSRD 35377
17-03-17 23:28:47.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:47.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:47.448 -07 000000618 INF: FPGA: Recv ZSGSRD 35376
17-03-17 23:28:47.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:47.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:47.458 -07 000000486 INF: FPGA: Recv ZSGSRD 35380
17-03-17 23:28:47.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:47.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:47.468 -07 000000502 INF: FPGA: Recv ZSGSRD 35384
17-03-17 23:28:47.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:47.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:47.478 -07 000000459 INF: FPGA: Recv ZSGSRD 35373
17-03-17 23:28:47.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:47.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:47.488 -07 000000433 INF: FPGA: Recv ZSGSRD 35373
17-03-17 23:28:47.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:47.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:47.498 -07 000000512 INF: FPGA: Recv ZSGSRD 35379
17-03-17 23:28:47.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:47.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:47.508 -07 000000409 INF: FPGA: Recv ZSGSRD 35382
17-03-17 23:28:47.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:47.518 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:28:47.518 -07 000000480 INF: FPGA: Recv ZPIEZORD 31184
17-03-17 23:28:47.528 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:47.528 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.586 V. Piezo Error = -9.2 V.
17-03-17 23:28:47.528 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.6 um, Read 10 ADC samples: Avg = 35378 (-166.7 uncal um), Error = 0.9 uncal um, Median = 35378 (-166.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35373 (-166.7 uncal um), Max = 35384 (-166.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:28:47.528 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35378, posNoise = 6, negNoise = 5
17-03-17 23:28:47.528 -07 000000610 INF: Z Motor: After move to -0.167594, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:28:47.528 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 23:28:47.528 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:28:47.528 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:28:47.528 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:28:47.528 -07 000000409 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:28:47.528 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:28:47.528 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:28:47.528 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:28:47.528 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:28:47.528 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:28:47.528 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:28:47.528 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:28:47.528 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:28:47.538 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:28:47.538 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:28:47.538 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:28:47.538 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:28:47.548 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 23:28:47.548 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:28:47.548 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 23:28:47.548 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 23:28:47.548 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 476 476 229 229 36788 150\n [Camera]
17-03-17 23:28:47.748 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:28:48.228 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 668
17-03-17 23:28:48.228 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 668
17-03-17 23:28:48.228 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:28:48.228 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 668
17-03-17 23:28:48.228 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 668
17-03-17 23:28:48.228 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:28:48.228 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:28:48.228 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1145516880, 0x0, 418435064) start.
17-03-17 23:28:48.228 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:28:48.228 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 23:28:48.418 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36788 861
17-03-17 23:28:48.568 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1012
17-03-17 23:28:48.618 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1145516880, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 23:28:48.618 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 23:28:48.618 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:28:48.628 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 23:28:48.628 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 403 ms.
17-03-17 23:28:48.628 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 23:28:48.628 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:28:48.638 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms.
17-03-17 23:28:48.648 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 10 ms.
17-03-17 23:28:48.648 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 419 ms.
17-03-17 23:28:48.658 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 3.98264,
17-03-17 23:28:48.798 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1240
17-03-17 23:28:48.798 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1240
17-03-17 23:28:48.798 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:28:48.798 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:28:48.798 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start.
17-03-17 23:28:48.798 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1240
17-03-17 23:28:48.798 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1240
17-03-17 23:28:48.798 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:28:48.798 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:28:48.798 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) start.
17-03-17 23:28:48.988 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 1433
17-03-17 23:28:48.988 -07 000000448 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:28:48.988 -07 000000610 INF: FPGA: 'CAMDBLSNAP 476 476 229 229 36788 150' command took 2 ms to send, 1433 ms to get response, and 1440 ms overall
17-03-17 23:28:48.988 -07 000000610 INF: Skipping AutoFocus in Tile 14: adopting Best-Z from the cache: -0.168108
17-03-17 23:28:48.988 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.16811 mm
17-03-17 23:28:48.988 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:28:48.988 -07 000000409 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 23:28:48.988 -07 000000409 INF: Y Motor: Moving to 70.7026 mm, started at 69.8628 mm, delta = 0.8398 mm
17-03-17 23:28:48.988 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 36723, sync = True, waitForSettling = False)
17-03-17 23:28:48.988 -07 000000561 INF: Z Motor: Moving to -0.168107 mm, started at -0.167599 mm, distance = -0.51 um
17-03-17 23:28:48.988 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:28:48.998 -07 000000561 INF: FPGA: Xmit ZDACW 36723\n [Z Motor]
17-03-17 23:28:48.998 -07 000000448 INF: FPGA: Recv YRDPOS 143079
17-03-17 23:28:48.998 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 23:28:48.998 -07 000000409 INF: Y Motor: Encoder = 143079 = motor step 111780.5 = 69.8628 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:28:48.998 -07 000000409 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:28:48.998 -07 000000409 INF: Y Motor: Moving 1344 steps-21
17-03-17 23:28:48.998 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 23:28:49.008 -07 000000561 INF: FPGA: 'ZDACW 36723' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 23:28:49.008 -07 000000409 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:28:49.018 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:28:49.018 -07 000000623 INF: FPGA: Recv ZDACR 36723
17-03-17 23:28:49.028 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:28:49.138 -07 000000561 INF: Z Motor: MoveAbsStepped took 31 ms (did NOT wait for settling yet))
17-03-17 23:28:49.178 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 23:28:49.178 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 23:28:49.178 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2218332320, 0x0, 418435064) end. Duration was 381 ms.
17-03-17 23:28:49.178 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 23:28:49.178 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:28:49.178 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:28:49.188 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:28:49.188 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 23:28:49.188 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 23:28:49.188 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 23:28:49.378 -07 000000627 INF: FPGA: Recv YMVTILE
17-03-17 23:28:49.378 -07 000000409 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall
17-03-17 23:28:49.428 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:28:49.428 -07 000000561 INF: FPGA: Recv YRDPOS 144768
17-03-17 23:28:49.438 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:28:49.438 -07 000000409 INF: Y Motor: Encoder = 144768 = motor step 113100.0 = 70.6875 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:28:49.438 -07 000000409 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 23:28:49.438 -07 000000409 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.840 mm, average velocity = 2.176 mm/sec
17-03-17 23:28:50.388 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:28:50.388 -07 000000618 INF: FPGA: Recv YRDPOS 144769
17-03-17 23:28:50.398 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:28:50.398 -07 000000409 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:28:50.418 -07 000000409 INF: Y Motor: After move to 70.702606, error = -0.014618, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:28:50.418 -07 000000409 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 23:28:50.418 -07 000000409 INF: Y Motor: Moved to 70.6880 after 1427 ms (table move)
17-03-17 23:28:50.418 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.168107 mm (DAC = 36723)
17-03-17 23:28:50.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:50.428 -07 000000561 INF: FPGA: Recv ZSGSRD 35460
17-03-17 23:28:50.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 23:28:50.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:50.428 -07 000000438 INF: FPGA: Recv ZSGSRD 35456
17-03-17 23:28:50.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:28:50.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:50.438 -07 000000459 INF: FPGA: Recv ZSGSRD 35462
17-03-17 23:28:50.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:50.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:50.448 -07 000000433 INF: FPGA: Recv ZSGSRD 35464
17-03-17 23:28:50.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:50.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:50.458 -07 000000561 INF: FPGA: Recv ZSGSRD 35462
17-03-17 23:28:50.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:50.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:50.468 -07 000000627 INF: FPGA: Recv ZSGSRD 35455
17-03-17 23:28:50.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:50.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:50.478 -07 000000541 INF: FPGA: Recv ZSGSRD 35455
17-03-17 23:28:50.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:50.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:50.488 -07 000000409 INF: FPGA: Recv ZSGSRD 35452
17-03-17 23:28:50.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:50.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:50.498 -07 000000623 INF: FPGA: Recv ZSGSRD 35460
17-03-17 23:28:50.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:50.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:50.508 -07 000000623 INF: FPGA: Recv ZSGSRD 35459
17-03-17 23:28:50.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:28:50.518 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:28:50.518 -07 000000480 INF: FPGA: Recv ZPIEZORD 31306
17-03-17 23:28:50.528 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:50.528 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.604 V. Piezo Error = -9.2 V.
17-03-17 23:28:50.528 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.1 um, Read 10 ADC samples: Avg = 35458 (-167.2 uncal um), Error = 0.9 uncal um, Median = 35460 (-167.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35452 (-167.2 uncal um), Max = 35464 (-167.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:28:50.528 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35458, posNoise = 6, negNoise = 6
17-03-17 23:28:50.528 -07 000000610 INF: Z Motor: After move to -0.168107, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:28:50.528 -07 000000610 INF: Z Motor: Settle wait time = 1430 ms, measure time = 102 ms (allowed 150 ms), total time = 1532 ms
17-03-17 23:28:50.528 -07 000000610 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 23:28:50.578 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1584 ms
17-03-17 23:28:50.578 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:28:50.578 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.68798828125, Z-position -0.168113066133695. ----------
17-03-17 23:28:50.578 -07 000000610 INF: Cycle	76	Tile	14	Exposure Settings		A	476	G	229	T	229	C	476
17-03-17 23:28:50.578 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36546, sync = True, waitForSettling = True)
17-03-17 23:28:50.578 -07 000000610 INF: Z Motor: Moving to -0.167297 mm, started at -0.168113 mm, distance = 0.82 um
17-03-17 23:28:50.578 -07 000000610 INF: FPGA: Xmit ZDACW 36546\n [Z Motor]
17-03-17 23:28:50.578 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 23:28:50.588 -07 000000610 INF: FPGA: 'ZDACW 36546' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:28:50.588 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:28:50.588 -07 000000623 INF: FPGA: Recv ZDACR 36546
17-03-17 23:28:50.598 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:50.598 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:28:50.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:50.748 -07 000000480 INF: FPGA: Recv ZSGSRD 35338
17-03-17 23:28:50.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:28:50.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:50.758 -07 000000438 INF: FPGA: Recv ZSGSRD 35331
17-03-17 23:28:50.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:50.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:50.768 -07 000000433 INF: FPGA: Recv ZSGSRD 35334
17-03-17 23:28:50.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:50.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:50.778 -07 000000618 INF: FPGA: Recv ZSGSRD 35332
17-03-17 23:28:50.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:50.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:50.788 -07 000000502 INF: FPGA: Recv ZSGSRD 35336
17-03-17 23:28:50.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:50.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:50.798 -07 000000409 INF: FPGA: Recv ZSGSRD 35329
17-03-17 23:28:50.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:50.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:50.808 -07 000000512 INF: FPGA: Recv ZSGSRD 35332
17-03-17 23:28:50.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:50.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:50.818 -07 000000502 INF: FPGA: Recv ZSGSRD 35336
17-03-17 23:28:50.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:50.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:50.828 -07 000000561 INF: FPGA: Recv ZSGSRD 35330
17-03-17 23:28:50.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:50.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:50.838 -07 000000448 INF: FPGA: Recv ZSGSRD 35332
17-03-17 23:28:50.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:50.848 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:28:50.848 -07 000000576 INF: FPGA: Recv ZPIEZORD 31112
17-03-17 23:28:50.858 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:50.858 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.577 V. Piezo Error = -9.3 V.
17-03-17 23:28:50.858 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.3 um, Read 10 ADC samples: Avg = 35333 (-166.4 uncal um), Error = 0.9 uncal um, Median = 35332 (-166.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35329 (-166.4 uncal um), Max = 35338 (-166.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:28:50.858 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35333, posNoise = 5, negNoise = 4
17-03-17 23:28:50.858 -07 000000610 INF: Z Motor: After move to -0.167297, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:28:50.858 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 23:28:50.858 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:28:50.858 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:28:50.858 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:28:50.858 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:28:50.858 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:28:50.858 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:28:50.858 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:28:50.858 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:28:50.858 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:28:50.858 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:28:50.858 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:28:50.858 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:28:50.868 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:28:50.868 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:28:50.868 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:28:50.868 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:28:50.878 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-17 23:28:50.878 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 23:28:50.878 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 23:28:50.878 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 23:28:50.878 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 476 476 229 229 36723 150\n [Camera]
17-03-17 23:28:51.078 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:28:51.558 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 668
17-03-17 23:28:51.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 668
17-03-17 23:28:51.558 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:28:51.558 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 668
17-03-17 23:28:51.558 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 668
17-03-17 23:28:51.558 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:28:51.568 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:28:51.568 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 23:28:51.568 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:28:51.568 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1145516880, 0x0, 418435064) start.
17-03-17 23:28:51.748 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36723 861
17-03-17 23:28:51.898 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1011
17-03-17 23:28:51.938 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 23:28:51.938 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 372 ms.
17-03-17 23:28:51.938 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:28:51.938 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:28:51.938 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 23:28:51.938 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1145516880, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 23:28:51.938 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 23:28:51.938 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:28:51.948 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:28:51.958 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 23:28:52.068 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:28:52.068 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 75. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1215, R2=1270, Total=2485. Warn if over 250 bubbles per interval.
17-03-17 23:28:52.128 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1240
17-03-17 23:28:52.128 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1240
17-03-17 23:28:52.128 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:28:52.138 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1240
17-03-17 23:28:52.138 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1240
17-03-17 23:28:52.138 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:28:52.138 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:28:52.138 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 23:28:52.138 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:28:52.138 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 23:28:52.318 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP 1433
17-03-17 23:28:52.318 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:28:52.318 -07 000000610 INF: FPGA: 'CAMDBLSNAP 476 476 229 229 36723 150' command took 2 ms to send, 1427 ms to get response, and 1440 ms overall
17-03-17 23:28:52.318 -07 000000610 INF: Skipping AutoFocus in Tile 15: adopting Best-Z from the cache: -0.167950
17-03-17 23:28:52.328 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.16795 mm
17-03-17 23:28:52.328 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:28:52.328 -07 000000459 INF: Z Motor: Entering MoveAbsStepped (DAC = 36689, sync = True, waitForSettling = False)
17-03-17 23:28:52.328 -07 000000459 INF: Z Motor: Moving to -0.167951 mm, started at -0.167310 mm, distance = -0.64 um
17-03-17 23:28:52.328 -07 000000459 INF: FPGA: Xmit ZDACW 36689\n [Z Motor]
17-03-17 23:28:52.328 -07 000000433 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 23:28:52.328 -07 000000433 INF: Y Motor: Moving to 71.5326 mm, started at 70.6880 mm, delta = 0.8446 mm
17-03-17 23:28:52.328 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 23:28:52.338 -07 000000459 INF: FPGA: 'ZDACW 36689' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:28:52.338 -07 000000459 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:28:52.338 -07 000000438 INF: FPGA: Recv ZDACR 36689
17-03-17 23:28:52.348 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:28:52.348 -07 000000459 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:52.348 -07 000000459 INF: Z Motor: MoveAbsStepped took 16 ms (did NOT wait for settling yet))
17-03-17 23:28:52.348 -07 000000502 INF: FPGA: Recv YRDPOS 144769
17-03-17 23:28:52.358 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 23:28:52.358 -07 000000433 INF: Y Motor: Encoder = 144769 = motor step 113100.8 = 70.6880 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:28:52.358 -07 000000433 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:28:52.358 -07 000000433 INF: Y Motor: Moving 1351 steps-31
17-03-17 23:28:52.358 -07 000000433 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:28:52.518 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 23:28:52.518 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 23:28:52.518 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:28:52.518 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 23:28:52.518 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 23:28:52.518 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:28:52.518 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 23:28:52.518 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 23:28:52.518 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 23:28:52.528 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 23:28:52.728 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-17 23:28:52.728 -07 000000433 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 378 ms overall
17-03-17 23:28:52.778 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:28:52.778 -07 000000448 INF: FPGA: Recv YRDPOS 146470
17-03-17 23:28:52.788 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:28:52.788 -07 000000433 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:28:52.788 -07 000000433 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 23:28:52.788 -07 000000433 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.845 mm, average velocity = 2.234 mm/sec
17-03-17 23:28:53.738 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:28:53.738 -07 000000541 INF: FPGA: Recv YRDPOS 146470
17-03-17 23:28:53.748 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:28:53.748 -07 000000433 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:28:53.768 -07 000000433 INF: Y Motor: After move to 71.532608, error = -0.014053, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:28:53.768 -07 000000433 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:28:53.768 -07 000000433 INF: Y Motor: Moved to 71.5186 after 1442 ms (table move)
17-03-17 23:28:53.768 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.167951 mm (DAC = 36689)
17-03-17 23:28:53.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:53.778 -07 000000561 INF: FPGA: Recv ZSGSRD 35441
17-03-17 23:28:53.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:28:53.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:53.788 -07 000000541 INF: FPGA: Recv ZSGSRD 35441
17-03-17 23:28:53.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:53.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:53.798 -07 000000541 INF: FPGA: Recv ZSGSRD 35437
17-03-17 23:28:53.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:53.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:53.808 -07 000000618 INF: FPGA: Recv ZSGSRD 35433
17-03-17 23:28:53.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:53.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:53.818 -07 000000409 INF: FPGA: Recv ZSGSRD 35432
17-03-17 23:28:53.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:53.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:53.828 -07 000000459 INF: FPGA: Recv ZSGSRD 35431
17-03-17 23:28:53.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:53.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:53.838 -07 000000561 INF: FPGA: Recv ZSGSRD 35429
17-03-17 23:28:53.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:53.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:53.848 -07 000000433 INF: FPGA: Recv ZSGSRD 35433
17-03-17 23:28:53.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:53.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:53.858 -07 000000480 INF: FPGA: Recv ZSGSRD 35440
17-03-17 23:28:53.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:53.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:53.868 -07 000000459 INF: FPGA: Recv ZSGSRD 35433
17-03-17 23:28:53.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:53.878 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:28:53.878 -07 000000541 INF: FPGA: Recv ZPIEZORD 31282
17-03-17 23:28:53.888 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:53.888 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.598 V. Piezo Error = -9.2 V.
17-03-17 23:28:53.888 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.0 um, Read 10 ADC samples: Avg = 35435 (-167.1 uncal um), Error = 0.9 uncal um, Median = 35433 (-167.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35429 (-167.1 uncal um), Max = 35441 (-167.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:28:53.888 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35435, posNoise = 6, negNoise = 6
17-03-17 23:28:53.888 -07 000000610 INF: Z Motor: After move to -0.167951, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:28:53.888 -07 000000610 INF: Z Motor: Settle wait time = 1445 ms, measure time = 111 ms (allowed 150 ms), total time = 1556 ms
17-03-17 23:28:53.888 -07 000000610 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 23:28:53.928 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1600 ms
17-03-17 23:28:53.928 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:28:53.928 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.5185546875, Z-position -0.167965309254434. ----------
17-03-17 23:28:53.928 -07 000000610 INF: Cycle	76	Tile	15	Exposure Settings		A	476	G	229	T	229	C	476
17-03-17 23:28:53.928 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36512, sync = True, waitForSettling = True)
17-03-17 23:28:53.928 -07 000000610 INF: Z Motor: Moving to -0.167141 mm, started at -0.167965 mm, distance = 0.82 um
17-03-17 23:28:53.928 -07 000000610 INF: FPGA: Xmit ZDACW 36512\n [Z Motor]
17-03-17 23:28:53.928 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 23:28:53.938 -07 000000610 INF: FPGA: 'ZDACW 36512' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:28:53.938 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:28:53.938 -07 000000438 INF: FPGA: Recv ZDACR 36512
17-03-17 23:28:53.948 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:53.948 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:28:54.018 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 3.977204,
17-03-17 23:28:54.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:54.098 -07 000000512 INF: FPGA: Recv ZSGSRD 35314
17-03-17 23:28:54.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:54.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:54.108 -07 000000623 INF: FPGA: Recv ZSGSRD 35313
17-03-17 23:28:54.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:54.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:54.118 -07 000000502 INF: FPGA: Recv ZSGSRD 35309
17-03-17 23:28:54.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:54.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:54.128 -07 000000561 INF: FPGA: Recv ZSGSRD 35318
17-03-17 23:28:54.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:54.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:54.138 -07 000000433 INF: FPGA: Recv ZSGSRD 35314
17-03-17 23:28:54.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:28:54.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:54.148 -07 000000459 INF: FPGA: Recv ZSGSRD 35303
17-03-17 23:28:54.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:54.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:54.158 -07 000000438 INF: FPGA: Recv ZSGSRD 35307
17-03-17 23:28:54.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:54.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:54.168 -07 000000480 INF: FPGA: Recv ZSGSRD 35307
17-03-17 23:28:54.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:54.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:54.178 -07 000000627 INF: FPGA: Recv ZSGSRD 35307
17-03-17 23:28:54.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:54.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:54.198 -07 000000486 INF: FPGA: Recv ZSGSRD 35309
17-03-17 23:28:54.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:28:54.208 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:28:54.208 -07 000000561 INF: FPGA: Recv ZPIEZORD 31088
17-03-17 23:28:54.218 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:54.218 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.571 V. Piezo Error = -9.3 V.
17-03-17 23:28:54.218 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.1 um, Read 10 ADC samples: Avg = 35310 (-166.3 uncal um), Error = 0.8 uncal um, Median = 35309 (-166.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35303 (-166.2 uncal um), Max = 35318 (-166.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 23:28:54.218 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35310, posNoise = 8, negNoise = 7
17-03-17 23:28:54.218 -07 000000610 INF: Z Motor: After move to -0.167141, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:28:54.218 -07 000000610 INF: Z Motor: MoveAbsStepped took 285 ms)
17-03-17 23:28:54.218 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:28:54.218 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:28:54.218 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:28:54.218 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:28:54.218 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:28:54.218 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:28:54.218 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:28:54.218 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:28:54.218 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:28:54.218 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:28:54.218 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:28:54.218 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:28:54.218 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:28:54.218 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:28:54.228 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:28:54.228 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:28:54.238 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 23:28:54.238 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 23:28:54.238 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 23:28:54.238 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:28:54.238 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 476 476 229 229 36689 150\n [Camera]
17-03-17 23:28:54.438 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:28:54.918 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 668
17-03-17 23:28:54.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 668
17-03-17 23:28:54.918 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:28:54.918 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:28:54.918 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 23:28:54.918 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 668
17-03-17 23:28:54.918 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 668
17-03-17 23:28:54.918 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:28:54.918 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:28:54.918 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start.
17-03-17 23:28:55.108 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36689 861
17-03-17 23:28:55.258 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1011
17-03-17 23:28:55.298 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 23:28:55.298 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 23:28:55.298 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:28:55.298 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 23:28:55.298 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 23:28:55.298 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:28:55.298 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:28:55.298 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 23:28:55.298 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:28:55.308 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 23:28:55.488 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1240
17-03-17 23:28:55.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1240
17-03-17 23:28:55.488 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:28:55.488 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:28:55.488 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start.
17-03-17 23:28:55.488 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1240
17-03-17 23:28:55.488 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1240
17-03-17 23:28:55.488 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:28:55.498 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:28:55.498 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 23:28:55.678 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP 1433
17-03-17 23:28:55.678 -07 000000576 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:28:55.678 -07 000000610 INF: FPGA: 'CAMDBLSNAP 476 476 229 229 36689 150' command took 2 ms to send, 1428 ms to get response, and 1440 ms overall
17-03-17 23:28:55.688 -07 000000610 INF: Skipping AutoFocus in Tile 16: adopting Best-Z from the cache: -0.167547
17-03-17 23:28:55.688 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.16755 mm
17-03-17 23:28:55.688 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:28:55.688 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 36601, sync = True, waitForSettling = False)
17-03-17 23:28:55.688 -07 000000486 INF: Z Motor: Moving to -0.167549 mm, started at -0.167162 mm, distance = -0.39 um
17-03-17 23:28:55.688 -07 000000486 INF: FPGA: Xmit ZDACW 36601\n [Z Motor]
17-03-17 23:28:55.688 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 23:28:55.688 -07 000000459 INF: Y Motor: Moving to 72.3626 mm, started at 71.5186 mm, delta = 0.8441 mm
17-03-17 23:28:55.688 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 23:28:55.698 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:28:55.698 -07 000000486 INF: FPGA: 'ZDACW 36601' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:28:55.698 -07 000000623 INF: FPGA: Recv YRDPOS 146470
17-03-17 23:28:55.708 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 23:28:55.708 -07 000000459 INF: Y Motor: Encoder = 146470 = motor step 114429.7 = 71.5186 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:28:55.708 -07 000000459 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:28:55.708 -07 000000459 INF: Y Motor: Moving 1350 steps-29
17-03-17 23:28:55.708 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:28:55.708 -07 000000576 INF: FPGA: Recv ZDACR 36601
17-03-17 23:28:55.718 -07 000000486 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:28:55.718 -07 000000486 INF: Z Motor: MoveAbsStepped took 26 ms (did NOT wait for settling yet))
17-03-17 23:28:55.718 -07 000000459 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:28:55.878 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 23:28:55.878 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 23:28:55.878 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:28:55.878 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 23:28:55.878 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 23:28:55.878 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:28:55.878 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:28:55.888 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:28:55.888 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 23:28:55.888 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 23:28:56.088 -07 000000623 INF: FPGA: Recv YMVTILE
17-03-17 23:28:56.088 -07 000000459 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 23:28:56.138 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:28:56.138 -07 000000486 INF: FPGA: Recv YRDPOS 148171
17-03-17 23:28:56.148 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:56.148 -07 000000459 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:28:56.148 -07 000000459 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 23:28:56.148 -07 000000459 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.844 mm, average velocity = 2.175 mm/sec
17-03-17 23:28:57.068 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:28:57.068 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 75. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1215, R2=1270, Total=2485. Warn if over 250 bubbles per interval.
17-03-17 23:28:57.098 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:28:57.098 -07 000000475 INF: FPGA: Recv YRDPOS 148171
17-03-17 23:28:57.108 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:28:57.108 -07 000000459 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:28:57.128 -07 000000459 INF: Y Motor: After move to 72.362610, error = -0.013489, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:28:57.128 -07 000000459 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:28:57.128 -07 000000459 INF: Y Motor: Moved to 72.3491 after 1440 ms (table move)
17-03-17 23:28:57.128 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.167549 mm (DAC = 36601)
17-03-17 23:28:57.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:57.138 -07 000000627 INF: FPGA: Recv ZSGSRD 35370
17-03-17 23:28:57.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 23:28:57.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:57.138 -07 000000618 INF: FPGA: Recv ZSGSRD 35369
17-03-17 23:28:57.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:28:57.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:57.148 -07 000000438 INF: FPGA: Recv ZSGSRD 35370
17-03-17 23:28:57.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:57.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:57.158 -07 000000459 INF: FPGA: Recv ZSGSRD 35371
17-03-17 23:28:57.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:57.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:57.168 -07 000000512 INF: FPGA: Recv ZSGSRD 35369
17-03-17 23:28:57.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:57.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:57.178 -07 000000502 INF: FPGA: Recv ZSGSRD 35373
17-03-17 23:28:57.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:57.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:57.188 -07 000000576 INF: FPGA: Recv ZSGSRD 35375
17-03-17 23:28:57.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:57.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:57.198 -07 000000561 INF: FPGA: Recv ZSGSRD 35372
17-03-17 23:28:57.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:57.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:57.208 -07 000000433 INF: FPGA: Recv ZSGSRD 35368
17-03-17 23:28:57.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:57.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:57.218 -07 000000486 INF: FPGA: Recv ZSGSRD 35366
17-03-17 23:28:57.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:57.228 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:28:57.228 -07 000000475 INF: FPGA: Recv ZPIEZORD 31184
17-03-17 23:28:57.238 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:57.238 -07 000000610 INF: Z Motor: Piezo is near 46.6 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.585 V. Piezo Error = -9.2 V.
17-03-17 23:28:57.238 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.5 um, Read 10 ADC samples: Avg = 35370 (-166.7 uncal um), Error = 0.9 uncal um, Median = 35370 (-166.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35366 (-166.7 uncal um), Max = 35375 (-166.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:28:57.238 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35370, posNoise = 5, negNoise = 4
17-03-17 23:28:57.238 -07 000000610 INF: Z Motor: After move to -0.167549, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:28:57.238 -07 000000610 INF: Z Motor: Settle wait time = 1445 ms, measure time = 101 ms (allowed 150 ms), total time = 1546 ms
17-03-17 23:28:57.238 -07 000000610 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 23:28:57.288 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1598 ms
17-03-17 23:28:57.288 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:28:57.288 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.34912109375, Z-position -0.16754773546522. ----------
17-03-17 23:28:57.288 -07 000000610 INF: Cycle	76	Tile	16	Exposure Settings		A	476	G	229	T	229	C	476
17-03-17 23:28:57.288 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36424, sync = True, waitForSettling = True)
17-03-17 23:28:57.288 -07 000000610 INF: Z Motor: Moving to -0.166738 mm, started at -0.167548 mm, distance = 0.81 um
17-03-17 23:28:57.288 -07 000000610 INF: FPGA: Xmit ZDACW 36424\n [Z Motor]
17-03-17 23:28:57.288 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 23:28:57.298 -07 000000610 INF: FPGA: 'ZDACW 36424' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:28:57.298 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:28:57.298 -07 000000433 INF: FPGA: Recv ZDACR 36424
17-03-17 23:28:57.308 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:28:57.308 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:28:57.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:57.458 -07 000000480 INF: FPGA: Recv ZSGSRD 35245
17-03-17 23:28:57.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:28:57.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:57.468 -07 000000475 INF: FPGA: Recv ZSGSRD 35239
17-03-17 23:28:57.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:57.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:57.478 -07 000000576 INF: FPGA: Recv ZSGSRD 35248
17-03-17 23:28:57.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:57.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:57.488 -07 000000627 INF: FPGA: Recv ZSGSRD 35249
17-03-17 23:28:57.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:57.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:57.498 -07 000000512 INF: FPGA: Recv ZSGSRD 35243
17-03-17 23:28:57.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:57.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:57.508 -07 000000475 INF: FPGA: Recv ZSGSRD 35247
17-03-17 23:28:57.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:57.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:57.518 -07 000000541 INF: FPGA: Recv ZSGSRD 35241
17-03-17 23:28:57.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:57.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:57.528 -07 000000627 INF: FPGA: Recv ZSGSRD 35246
17-03-17 23:28:57.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:57.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:57.538 -07 000000433 INF: FPGA: Recv ZSGSRD 35248
17-03-17 23:28:57.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:57.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:28:57.548 -07 000000486 INF: FPGA: Recv ZSGSRD 35252
17-03-17 23:28:57.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:57.558 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:28:57.558 -07 000000459 INF: FPGA: Recv ZPIEZORD 31028
17-03-17 23:28:57.568 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:57.568 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.558 V. Piezo Error = -9.3 V.
17-03-17 23:28:57.568 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.7 um, Read 10 ADC samples: Avg = 35246 (-165.9 uncal um), Error = 0.9 uncal um, Median = 35246 (-165.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35239 (-165.8 uncal um), Max = 35252 (-165.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 23:28:57.568 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35246, posNoise = 6, negNoise = 7
17-03-17 23:28:57.568 -07 000000610 INF: Z Motor: After move to -0.166738, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:28:57.568 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 23:28:57.568 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:28:57.568 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:28:57.568 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:28:57.568 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:28:57.568 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:28:57.568 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:28:57.568 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:28:57.568 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:28:57.568 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:28:57.568 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:28:57.568 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:28:57.568 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:28:57.568 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:28:57.568 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:28:57.578 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:28:57.578 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:28:57.588 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 23:28:57.588 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 23:28:57.588 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 23:28:57.588 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:28:57.588 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 476 476 229 229 36601 150\n [Camera]
17-03-17 23:28:57.788 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:28:58.268 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 671
17-03-17 23:28:58.268 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 671
17-03-17 23:28:58.268 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:28:58.268 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:28:58.268 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 23:28:58.268 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 671
17-03-17 23:28:58.268 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 671
17-03-17 23:28:58.278 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:28:58.278 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:28:58.278 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 23:28:58.458 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36601 861
17-03-17 23:28:58.608 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1011
17-03-17 23:28:58.648 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 23:28:58.648 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 23:28:58.648 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:28:58.648 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 23:28:58.648 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 23:28:58.648 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:28:58.648 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:28:58.648 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 23:28:58.658 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:28:58.658 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 23:28:58.838 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1240
17-03-17 23:28:58.838 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1240
17-03-17 23:28:58.838 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:28:58.968 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1240
17-03-17 23:28:58.968 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1240
17-03-17 23:28:58.968 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:28:58.978 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:28:58.978 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 23:28:58.978 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:28:58.978 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1145516880, 0x0, 418435064) start.
17-03-17 23:28:59.028 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP 1432
17-03-17 23:28:59.028 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:28:59.028 -07 000000610 INF: FPGA: 'CAMDBLSNAP 476 476 229 229 36601 150' command took 2 ms to send, 1427 ms to get response, and 1439 ms overall
17-03-17 23:28:59.028 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880
17-03-17 23:28:59.028 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.34912109375, Z-Position -0.166751133159642. ------
17-03-17 23:28:59.038 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:28:59.038 -07 000000409 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17322 mm
17-03-17 23:28:59.038 -07 000000409 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:28:59.038 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:28:59.038 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 23:28:59.038 -07 000000438 INF: Y Motor: Moving to 73.1926 mm, started at 72.3491 mm, delta = 0.8435 mm
17-03-17 23:28:59.038 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 37840, sync = True, waitForSettling = False)
17-03-17 23:28:59.038 -07 000000576 INF: Z Motor: Moving to -0.173220 mm, started at -0.166751 mm, distance = -6.47 um
17-03-17 23:28:59.048 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:28:59.048 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:28:59.048 -07 000000618 INF: FPGA: Recv YRDPOS 148171
17-03-17 23:28:59.058 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 23:28:59.058 -07 000000438 INF: Y Motor: Encoder = 148171 = motor step 115758.6 = 72.3491 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:28:59.058 -07 000000438 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:28:59.058 -07 000000438 INF: Y Motor: Moving 1350 steps-28
17-03-17 23:28:59.068 -07 000000576 INF: FPGA: Xmit ZDACW 37840\n [Z Motor]
17-03-17 23:28:59.068 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 23:28:59.078 -07 000000576 INF: FPGA: 'ZDACW 37840' command took 0 ms to send, 0 ms to get response, and 32 ms overall
17-03-17 23:28:59.078 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:28:59.088 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:28:59.098 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:28:59.098 -07 000000541 INF: FPGA: Recv ZDACR 37840
17-03-17 23:28:59.108 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:28:59.108 -07 000000576 INF: Z Motor: MoveAbsStepped took 62 ms (did NOT wait for settling yet))
17-03-17 23:28:59.278 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:28:59.278 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 231 ms overall
17-03-17 23:28:59.348 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1145516880, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 23:28:59.348 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 23:28:59.348 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:28:59.358 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 23:28:59.358 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 23:28:59.358 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:28:59.358 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 23:28:59.358 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 23:28:59.358 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 521 ms.
17-03-17 23:28:59.368 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 23:28:59.378 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 3.983999,
17-03-17 23:28:59.458 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-17 23:28:59.458 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 407 ms overall
17-03-17 23:28:59.508 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:28:59.508 -07 000000486 INF: FPGA: Recv YRDPOS 149864
17-03-17 23:28:59.518 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:28:59.518 -07 000000438 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:28:59.518 -07 000000438 INF: Y Motor: Position error before settling (table move) = -34 encoder counts (-0.017 mm)
17-03-17 23:28:59.518 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 408 ms, distance = 0.843 mm, average velocity = 2.067 mm/sec
17-03-17 23:29:00.468 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:29:00.468 -07 000000502 INF: FPGA: Recv YRDPOS 149864
17-03-17 23:29:00.478 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:29:00.478 -07 000000438 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:29:00.498 -07 000000438 INF: Y Motor: After move to 73.192604, error = -0.016823, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:29:00.498 -07 000000438 INF: Y Motor: Position error after settling (table move) = -34 encoder counts (-0.017 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:29:00.498 -07 000000438 INF: Y Motor: Moved to 73.1758 after 1459 ms (table move)
17-03-17 23:29:00.508 -07 000000409 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173220 mm (DAC = 37840)
17-03-17 23:29:00.508 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:00.508 -07 000000512 INF: FPGA: Recv ZSGSRD 36252
17-03-17 23:29:00.518 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:29:00.518 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:00.518 -07 000000541 INF: FPGA: Recv ZSGSRD 36253
17-03-17 23:29:00.528 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:00.528 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:00.528 -07 000000486 INF: FPGA: Recv ZSGSRD 36256
17-03-17 23:29:00.538 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:00.538 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:00.538 -07 000000502 INF: FPGA: Recv ZSGSRD 36248
17-03-17 23:29:00.548 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:00.548 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:00.548 -07 000000627 INF: FPGA: Recv ZSGSRD 36261
17-03-17 23:29:00.558 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:00.558 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:00.558 -07 000000433 INF: FPGA: Recv ZSGSRD 36256
17-03-17 23:29:00.568 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:00.568 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:00.568 -07 000000486 INF: FPGA: Recv ZSGSRD 36254
17-03-17 23:29:00.578 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:00.578 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:00.578 -07 000000623 INF: FPGA: Recv ZSGSRD 36247
17-03-17 23:29:00.588 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:00.588 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:00.588 -07 000000475 INF: FPGA: Recv ZSGSRD 36251
17-03-17 23:29:00.598 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:00.598 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:00.598 -07 000000438 INF: FPGA: Recv ZSGSRD 36258
17-03-17 23:29:00.608 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:00.608 -07 000000409 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:29:00.608 -07 000000618 INF: FPGA: Recv ZPIEZORD 32343
17-03-17 23:29:00.618 -07 000000409 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:00.618 -07 000000409 INF: Z Motor: Piezo is near 49.1 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.774 V. Piezo Error = -8.6 V.
17-03-17 23:29:00.618 -07 000000409 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.2 um, Read 10 ADC samples: Avg = 36254 (-172.3 uncal um), Error = 0.9 uncal um, Median = 36254 (-172.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36247 (-172.3 uncal um), Max = 36261 (-172.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 23:29:00.618 -07 000000409 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36254, posNoise = 7, negNoise = 7
17-03-17 23:29:00.618 -07 000000409 INF: Z Motor: After move to -0.173220, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:29:00.618 -07 000000409 INF: Z Motor: Settle wait time = 1462 ms, measure time = 110 ms (allowed 150 ms), total time = 1572 ms
17-03-17 23:29:00.618 -07 000000409 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 23:29:00.658 -07 000000409 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1616 ms
17-03-17 23:29:00.658 -07 000000409 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:29:00.658 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:29:00.658 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:29:00.658 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:29:00.658 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:29:00.658 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:29:00.658 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:29:00.658 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:29:00.658 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:29:00.668 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:29:00.668 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:29:00.678 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 23:29:00.678 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 23:29:00.678 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:29:00.728 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:29:00.918 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:29:00.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:29:00.928 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:29:00.928 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-17 23:29:00.958 -07 000000561 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:29:00.958 -07 000000433 INF: FPGA: Recv CAMSNAP
17-03-17 23:29:00.968 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 282 ms to get response, and 287 ms overall
17-03-17 23:29:01.048 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 123 ms.
17-03-17 23:29:01.048 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:29:01.048 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:29:01.048 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 126 ms.
17-03-17 23:29:01.068 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:29:01.068 -07 000000448 INF: Autofocus start
17-03-17 23:29:01.068 -07 000000448 INF: MeasureProfile start
17-03-17 23:29:01.078 -07 000000627 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:29:01.078 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 23:29:01.078 -07 000000486 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:29:01.088 -07 000000448 INF: MeasureProfile done
17-03-17 23:29:01.088 -07 000000448 INF: X=64  Z correction [um]=0.2557664
17-03-17 23:29:01.088 -07 000000448 INF: Autofocus finished
17-03-17 23:29:01.278 -07 000000433 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:29:01.278 -07 000000486 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 203 ms overall
17-03-17 23:29:01.288 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17578125, Z-position -0.173226738998537. ----------
17-03-17 23:29:01.288 -07 000000610 INF: Cycle	76	Tile	17	Exposure Settings		A	476	G	229	T	229	C	476
17-03-17 23:29:01.288 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36408, sync = True, waitForSettling = True)
17-03-17 23:29:01.288 -07 000000610 INF: Z Motor: Moving to -0.166665 mm, started at -0.173227 mm, distance = 6.56 um
17-03-17 23:29:01.288 -07 000000610 INF: FPGA: Xmit ZDACW 36408\n [Z Motor]
17-03-17 23:29:01.288 -07 000000409 INF: FPGA: Recv ZDACW
17-03-17 23:29:01.298 -07 000000610 INF: FPGA: 'ZDACW 36408' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:29:01.298 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:29:01.298 -07 000000448 INF: FPGA: Recv ZDACR 36408
17-03-17 23:29:01.308 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:01.308 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:29:01.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:01.458 -07 000000502 INF: FPGA: Recv ZSGSRD 35232
17-03-17 23:29:01.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:01.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:01.468 -07 000000480 INF: FPGA: Recv ZSGSRD 35226
17-03-17 23:29:01.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:01.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:01.478 -07 000000512 INF: FPGA: Recv ZSGSRD 35235
17-03-17 23:29:01.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:01.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:01.488 -07 000000618 INF: FPGA: Recv ZSGSRD 35234
17-03-17 23:29:01.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:01.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:01.498 -07 000000627 INF: FPGA: Recv ZSGSRD 35236
17-03-17 23:29:01.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:01.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:01.508 -07 000000459 INF: FPGA: Recv ZSGSRD 35234
17-03-17 23:29:01.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:01.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:01.518 -07 000000502 INF: FPGA: Recv ZSGSRD 35236
17-03-17 23:29:01.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:01.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:01.528 -07 000000438 INF: FPGA: Recv ZSGSRD 35233
17-03-17 23:29:01.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:01.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:01.538 -07 000000475 INF: FPGA: Recv ZSGSRD 35232
17-03-17 23:29:01.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:01.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:01.548 -07 000000502 INF: FPGA: Recv ZSGSRD 35232
17-03-17 23:29:01.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:01.558 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:29:01.558 -07 000000623 INF: FPGA: Recv ZPIEZORD 31015
17-03-17 23:29:01.568 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:01.568 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.556 V. Piezo Error = -9.3 V.
17-03-17 23:29:01.568 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.7 um, Read 10 ADC samples: Avg = 35233 (-165.8 uncal um), Error = 0.9 uncal um, Median = 35234 (-165.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35226 (-165.8 uncal um), Max = 35236 (-165.8 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 23:29:01.568 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35233, posNoise = 3, negNoise = 7
17-03-17 23:29:01.568 -07 000000610 INF: Z Motor: After move to -0.166665, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:29:01.568 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 23:29:01.568 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:29:01.568 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:29:01.568 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:29:01.568 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:29:01.568 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:29:01.568 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:29:01.568 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:29:01.568 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:29:01.568 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:29:01.568 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:29:01.568 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:29:01.568 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:29:01.568 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 23:29:01.578 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:29:01.578 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 23:29:01.578 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:29:01.578 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 23:29:01.588 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 23:29:01.588 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 10 ms.
17-03-17 23:29:01.588 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:29:01.588 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 476 476 229 229 36585 150\n [Camera]
17-03-17 23:29:01.788 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:29:02.068 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:29:02.068 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 75. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1215, R2=1270, Total=2485. Warn if over 250 bubbles per interval.
17-03-17 23:29:02.268 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 668
17-03-17 23:29:02.268 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 668
17-03-17 23:29:02.268 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:29:02.268 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:29:02.268 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 23:29:02.268 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 668
17-03-17 23:29:02.268 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 668
17-03-17 23:29:02.268 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:29:02.268 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:29:02.268 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 23:29:02.458 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36585 861
17-03-17 23:29:02.608 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1011
17-03-17 23:29:02.648 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 23:29:02.648 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 23:29:02.648 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:29:02.648 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:29:02.648 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 23:29:02.648 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 379 ms.
17-03-17 23:29:02.648 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 23:29:02.648 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:29:02.648 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:29:02.658 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 23:29:02.838 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1242
17-03-17 23:29:02.838 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1242
17-03-17 23:29:02.838 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:29:02.958 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1242
17-03-17 23:29:02.958 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1242
17-03-17 23:29:02.958 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:29:02.958 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:29:02.958 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 23:29:02.958 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:29:02.958 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 23:29:03.028 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 1433
17-03-17 23:29:03.028 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:29:03.028 -07 000000610 INF: FPGA: 'CAMDBLSNAP 476 476 229 229 36585 150' command took 4 ms to send, 1433 ms to get response, and 1440 ms overall
17-03-17 23:29:03.028 -07 000000610 INF: Skipping AutoFocus in Tile 18: adopting Best-Z from the cache: -0.167087
17-03-17 23:29:03.028 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.16709 mm
17-03-17 23:29:03.028 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:29:03.028 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 23:29:03.028 -07 000000618 INF: Y Motor: Moving to 74.0226 mm, started at 73.1758 mm, delta = 0.8468 mm
17-03-17 23:29:03.028 -07 000000448 INF: Z Motor: Entering MoveAbsStepped (DAC = 36500, sync = True, waitForSettling = False)
17-03-17 23:29:03.028 -07 000000448 INF: Z Motor: Moving to -0.167086 mm, started at -0.166668 mm, distance = -0.42 um
17-03-17 23:29:03.028 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:29:03.038 -07 000000448 INF: FPGA: Xmit ZDACW 36500\n [Z Motor]
17-03-17 23:29:03.038 -07 000000433 INF: FPGA: Recv YRDPOS 149864
17-03-17 23:29:03.038 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 3 ms to get response, and 5 ms overall
17-03-17 23:29:03.038 -07 000000618 INF: Y Motor: Encoder = 149864 = motor step 117081.3 = 73.1758 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:29:03.038 -07 000000618 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:29:03.038 -07 000000618 INF: Y Motor: Moving 1355 steps-34
17-03-17 23:29:03.038 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 23:29:03.048 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:29:03.048 -07 000000448 INF: FPGA: 'ZDACW 36500' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 23:29:03.058 -07 000000448 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:29:03.058 -07 000000512 INF: FPGA: Recv ZDACR 36500
17-03-17 23:29:03.068 -07 000000448 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:29:03.068 -07 000000448 INF: Z Motor: MoveAbsStepped took 31 ms (did NOT wait for settling yet))
17-03-17 23:29:03.348 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 23:29:03.348 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 23:29:03.348 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:29:03.348 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 23:29:03.348 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 23:29:03.348 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:29:03.348 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:29:03.348 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 23:29:03.348 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 512 ms.
17-03-17 23:29:03.358 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms.
17-03-17 23:29:03.418 -07 000000561 INF: FPGA: Recv YMVTILE
17-03-17 23:29:03.418 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 383 ms overall
17-03-17 23:29:03.458 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:29:03.458 -07 000000623 INF: FPGA: Recv YRDPOS 151568
17-03-17 23:29:03.468 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:03.468 -07 000000618 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:29:03.468 -07 000000618 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm)
17-03-17 23:29:03.468 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.847 mm, average velocity = 2.205 mm/sec
17-03-17 23:29:04.418 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:29:04.418 -07 000000433 INF: FPGA: Recv YRDPOS 151568
17-03-17 23:29:04.428 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:29:04.428 -07 000000618 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:29:04.448 -07 000000618 INF: Y Motor: After move to 74.022606, error = -0.014793, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:29:04.448 -07 000000618 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:29:04.448 -07 000000618 INF: Y Motor: Moved to 74.0078 after 1415 ms (table move)
17-03-17 23:29:04.448 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.167086 mm (DAC = 36500)
17-03-17 23:29:04.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:04.448 -07 000000475 INF: FPGA: Recv ZSGSRD 35292
17-03-17 23:29:04.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:29:04.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:04.458 -07 000000561 INF: FPGA: Recv ZSGSRD 35289
17-03-17 23:29:04.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:04.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:04.468 -07 000000502 INF: FPGA: Recv ZSGSRD 35299
17-03-17 23:29:04.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:04.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:04.478 -07 000000409 INF: FPGA: Recv ZSGSRD 35301
17-03-17 23:29:04.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:04.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:04.488 -07 000000475 INF: FPGA: Recv ZSGSRD 35306
17-03-17 23:29:04.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:04.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:04.498 -07 000000623 INF: FPGA: Recv ZSGSRD 35300
17-03-17 23:29:04.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:04.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:04.508 -07 000000480 INF: FPGA: Recv ZSGSRD 35291
17-03-17 23:29:04.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:04.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:04.518 -07 000000409 INF: FPGA: Recv ZSGSRD 35295
17-03-17 23:29:04.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:04.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:04.528 -07 000000459 INF: FPGA: Recv ZSGSRD 35296
17-03-17 23:29:04.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:04.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:04.538 -07 000000502 INF: FPGA: Recv ZSGSRD 35298
17-03-17 23:29:04.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:04.548 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:29:04.548 -07 000000433 INF: FPGA: Recv ZPIEZORD 31104
17-03-17 23:29:04.558 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:04.558 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.570 V. Piezo Error = -9.2 V.
17-03-17 23:29:04.558 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.1 um, Read 10 ADC samples: Avg = 35297 (-166.2 uncal um), Error = 0.9 uncal um, Median = 35297 (-166.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 35289 (-166.2 uncal um), Max = 35306 (-166.3 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 23:29:04.558 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35297, posNoise = 9, negNoise = 8
17-03-17 23:29:04.558 -07 000000610 INF: Z Motor: After move to -0.167086, error = 0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:29:04.558 -07 000000610 INF: Z Motor: Settle wait time = 1417 ms, measure time = 104 ms (allowed 150 ms), total time = 1521 ms
17-03-17 23:29:04.558 -07 000000610 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 23:29:04.608 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1573 ms
17-03-17 23:29:04.608 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:29:04.608 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0078125, Z-position -0.167078767978871. ----------
17-03-17 23:29:04.608 -07 000000610 INF: Cycle	76	Tile	18	Exposure Settings		A	476	G	229	T	229	C	476
17-03-17 23:29:04.608 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36324, sync = True, waitForSettling = True)
17-03-17 23:29:04.608 -07 000000610 INF: Z Motor: Moving to -0.166281 mm, started at -0.167079 mm, distance = 0.80 um
17-03-17 23:29:04.608 -07 000000610 INF: FPGA: Xmit ZDACW 36324\n [Z Motor]
17-03-17 23:29:04.618 -07 000000409 INF: FPGA: Recv ZDACW
17-03-17 23:29:04.618 -07 000000610 INF: FPGA: 'ZDACW 36324' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 23:29:04.618 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:29:04.618 -07 000000448 INF: FPGA: Recv ZDACR 36324
17-03-17 23:29:04.628 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:04.628 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:29:04.748 -07 000000409 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 3.988112,
17-03-17 23:29:04.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:04.778 -07 000000475 INF: FPGA: Recv ZSGSRD 35178
17-03-17 23:29:04.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:29:04.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:04.788 -07 000000409 INF: FPGA: Recv ZSGSRD 35173
17-03-17 23:29:04.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:04.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:04.808 -07 000000576 INF: FPGA: Recv ZSGSRD 35175
17-03-17 23:29:04.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:29:04.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:04.818 -07 000000480 INF: FPGA: Recv ZSGSRD 35173
17-03-17 23:29:04.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:04.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:04.828 -07 000000475 INF: FPGA: Recv ZSGSRD 35174
17-03-17 23:29:04.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:04.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:04.838 -07 000000561 INF: FPGA: Recv ZSGSRD 35175
17-03-17 23:29:04.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:04.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:04.848 -07 000000618 INF: FPGA: Recv ZSGSRD 35175
17-03-17 23:29:04.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:04.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:04.858 -07 000000438 INF: FPGA: Recv ZSGSRD 35171
17-03-17 23:29:04.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:04.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:04.868 -07 000000475 INF: FPGA: Recv ZSGSRD 35175
17-03-17 23:29:04.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:04.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:04.878 -07 000000502 INF: FPGA: Recv ZSGSRD 35178
17-03-17 23:29:04.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:04.888 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:29:04.888 -07 000000627 INF: FPGA: Recv ZPIEZORD 30940
17-03-17 23:29:04.898 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:04.898 -07 000000610 INF: Z Motor: Piezo is near 46.1 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.543 V. Piezo Error = -9.3 V.
17-03-17 23:29:04.898 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.3 um, Read 10 ADC samples: Avg = 35175 (-165.4 uncal um), Error = 0.9 uncal um, Median = 35175 (-165.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35171 (-165.4 uncal um), Max = 35178 (-165.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:29:04.898 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35175, posNoise = 3, negNoise = 4
17-03-17 23:29:04.898 -07 000000610 INF: Z Motor: After move to -0.166281, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:29:04.898 -07 000000610 INF: Z Motor: MoveAbsStepped took 283 ms)
17-03-17 23:29:04.898 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:29:04.898 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:29:04.898 -07 000000409 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:29:04.898 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:29:04.898 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:29:04.898 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:29:04.898 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:29:04.898 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:29:04.898 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:29:04.898 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:29:04.898 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 23:29:04.898 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:29:04.908 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:29:04.908 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:29:04.908 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:29:04.908 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:29:04.918 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 23:29:04.918 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:29:04.918 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 23:29:04.918 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 23:29:04.918 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 476 476 229 229 36500 150\n [Camera]
17-03-17 23:29:05.118 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:29:05.588 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 668
17-03-17 23:29:05.588 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 668
17-03-17 23:29:05.598 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:29:05.598 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:29:05.598 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1145516880, 0x0, 391868352) start.
17-03-17 23:29:05.598 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 668
17-03-17 23:29:05.598 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 668
17-03-17 23:29:05.598 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:29:05.598 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:29:05.598 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 23:29:05.788 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36500 861
17-03-17 23:29:05.938 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1014
17-03-17 23:29:05.978 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1145516880, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 23:29:05.978 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 23:29:05.978 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:29:05.978 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 23:29:05.978 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms.
17-03-17 23:29:05.978 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:29:05.978 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 23:29:05.978 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 23:29:05.978 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 23:29:05.988 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 23:29:06.168 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1240
17-03-17 23:29:06.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1240
17-03-17 23:29:06.168 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:29:06.168 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:29:06.168 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 23:29:06.168 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1240
17-03-17 23:29:06.168 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1240
17-03-17 23:29:06.168 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:29:06.288 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:29:06.288 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 23:29:06.358 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1433
17-03-17 23:29:06.358 -07 000000623 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:29:06.358 -07 000000610 INF: FPGA: 'CAMDBLSNAP 476 476 229 229 36500 150' command took 2 ms to send, 1433 ms to get response, and 1439 ms overall
17-03-17 23:29:06.358 -07 000000610 INF: Skipping AutoFocus in Tile 19: adopting Best-Z from the cache: -0.166731
17-03-17 23:29:06.358 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.16673 mm
17-03-17 23:29:06.358 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:29:06.358 -07 000000627 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 23:29:06.358 -07 000000627 INF: Y Motor: Moving to 74.8526 mm, started at 74.0078 mm, delta = 0.8448 mm
17-03-17 23:29:06.358 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:29:06.358 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 36422, sync = True, waitForSettling = False)
17-03-17 23:29:06.358 -07 000000486 INF: Z Motor: Moving to -0.166729 mm, started at -0.166295 mm, distance = -0.43 um
17-03-17 23:29:06.368 -07 000000486 INF: FPGA: Xmit ZDACW 36422\n [Z Motor]
17-03-17 23:29:06.368 -07 000000623 INF: FPGA: Recv YRDPOS 151568
17-03-17 23:29:06.368 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 23:29:06.368 -07 000000627 INF: Y Motor: Encoder = 151568 = motor step 118412.5 = 74.0078 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:29:06.368 -07 000000627 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:29:06.368 -07 000000627 INF: Y Motor: Moving 1352 steps-30
17-03-17 23:29:06.368 -07 000000409 INF: FPGA: Recv ZDACW
17-03-17 23:29:06.378 -07 000000627 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:29:06.378 -07 000000486 INF: FPGA: 'ZDACW 36422' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:29:06.388 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:29:06.388 -07 000000438 INF: FPGA: Recv ZDACR 36422
17-03-17 23:29:06.398 -07 000000486 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:29:06.398 -07 000000486 INF: Z Motor: MoveAbsStepped took 30 ms (did NOT wait for settling yet))
17-03-17 23:29:06.548 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 23:29:06.548 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 23:29:06.548 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:29:06.548 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:29:06.548 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 23:29:06.678 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 23:29:06.678 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 23:29:06.678 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:29:06.678 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms.
17-03-17 23:29:06.688 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 513 ms.
17-03-17 23:29:06.748 -07 000000433 INF: FPGA: Recv YMVTILE
17-03-17 23:29:06.748 -07 000000627 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-17 23:29:06.778 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:29:06.778 -07 000000433 INF: FPGA: Recv YRDPOS 153254
17-03-17 23:29:06.788 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:29:06.788 -07 000000627 INF: Y Motor: Encoder = 153254 = motor step 119729.7 = 74.8311 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:29:06.788 -07 000000627 INF: Y Motor: Position error before settling (table move) = -44 encoder counts (-0.021 mm)
17-03-17 23:29:06.788 -07 000000627 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.845 mm, average velocity = 2.189 mm/sec
17-03-17 23:29:07.068 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:29:07.068 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 75. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1215, R2=1270, Total=2485. Warn if over 250 bubbles per interval.
17-03-17 23:29:07.738 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:29:07.738 -07 000000541 INF: FPGA: Recv YRDPOS 153255
17-03-17 23:29:07.748 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:07.748 -07 000000627 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:29:07.758 -07 000000627 INF: Y Motor: After move to 74.852608, error = -0.021065, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:29:07.758 -07 000000627 INF: Y Motor: Position error after settling (table move) = -43 encoder counts (-0.021 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 23:29:07.758 -07 000000627 INF: Y Motor: Moved to 74.8315 after 1398 ms (table move)
17-03-17 23:29:07.758 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.166729 mm (DAC = 36422)
17-03-17 23:29:07.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:07.768 -07 000000576 INF: FPGA: Recv ZSGSRD 35243
17-03-17 23:29:07.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:29:07.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:07.778 -07 000000541 INF: FPGA: Recv ZSGSRD 35237
17-03-17 23:29:07.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:07.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:07.788 -07 000000459 INF: FPGA: Recv ZSGSRD 35241
17-03-17 23:29:07.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:07.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:07.798 -07 000000627 INF: FPGA: Recv ZSGSRD 35247
17-03-17 23:29:07.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:07.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:07.808 -07 000000576 INF: FPGA: Recv ZSGSRD 35238
17-03-17 23:29:07.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:07.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:07.818 -07 000000512 INF: FPGA: Recv ZSGSRD 35247
17-03-17 23:29:07.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:07.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:07.828 -07 000000475 INF: FPGA: Recv ZSGSRD 35245
17-03-17 23:29:07.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:07.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:07.838 -07 000000409 INF: FPGA: Recv ZSGSRD 35250
17-03-17 23:29:07.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:07.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:07.848 -07 000000438 INF: FPGA: Recv ZSGSRD 35244
17-03-17 23:29:07.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:07.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:07.858 -07 000000561 INF: FPGA: Recv ZSGSRD 35238
17-03-17 23:29:07.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:07.868 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:29:07.868 -07 000000480 INF: FPGA: Recv ZPIEZORD 31018
17-03-17 23:29:07.878 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:07.878 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.558 V. Piezo Error = -9.3 V.
17-03-17 23:29:07.878 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.7 um, Read 10 ADC samples: Avg = 35243 (-165.9 uncal um), Error = 0.9 uncal um, Median = 35244 (-165.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35237 (-165.8 uncal um), Max = 35250 (-165.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:29:07.878 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35243, posNoise = 7, negNoise = 6
17-03-17 23:29:07.878 -07 000000610 INF: Z Motor: After move to -0.166729, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:29:07.878 -07 000000610 INF: Z Motor: Settle wait time = 1400 ms, measure time = 111 ms (allowed 150 ms), total time = 1511 ms
17-03-17 23:29:07.878 -07 000000610 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 23:29:07.918 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1554 ms
17-03-17 23:29:07.918 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:29:07.918 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83154296875, Z-position -0.166731860523216. ----------
17-03-17 23:29:07.918 -07 000000610 INF: Cycle	76	Tile	19	Exposure Settings		A	476	G	229	T	229	C	476
17-03-17 23:29:07.918 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36246, sync = True, waitForSettling = True)
17-03-17 23:29:07.918 -07 000000610 INF: Z Motor: Moving to -0.165924 mm, started at -0.166732 mm, distance = 0.81 um
17-03-17 23:29:07.918 -07 000000610 INF: FPGA: Xmit ZDACW 36246\n [Z Motor]
17-03-17 23:29:07.918 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 23:29:07.928 -07 000000610 INF: FPGA: 'ZDACW 36246' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:29:07.928 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:29:07.928 -07 000000627 INF: FPGA: Recv ZDACR 36246
17-03-17 23:29:07.938 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:07.938 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:29:08.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:08.088 -07 000000438 INF: FPGA: Recv ZSGSRD 35115
17-03-17 23:29:08.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:29:08.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:08.098 -07 000000480 INF: FPGA: Recv ZSGSRD 35116
17-03-17 23:29:08.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:08.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:08.108 -07 000000475 INF: FPGA: Recv ZSGSRD 35116
17-03-17 23:29:08.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:08.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:08.118 -07 000000448 INF: FPGA: Recv ZSGSRD 35121
17-03-17 23:29:08.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:08.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:08.128 -07 000000409 INF: FPGA: Recv ZSGSRD 35123
17-03-17 23:29:08.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:08.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:08.138 -07 000000561 INF: FPGA: Recv ZSGSRD 35126
17-03-17 23:29:08.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:08.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:08.148 -07 000000623 INF: FPGA: Recv ZSGSRD 35127
17-03-17 23:29:08.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:08.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:08.158 -07 000000576 INF: FPGA: Recv ZSGSRD 35119
17-03-17 23:29:08.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:08.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:08.168 -07 000000618 INF: FPGA: Recv ZSGSRD 35116
17-03-17 23:29:08.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:08.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:08.178 -07 000000433 INF: FPGA: Recv ZSGSRD 35116
17-03-17 23:29:08.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:08.188 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:29:08.188 -07 000000480 INF: FPGA: Recv ZPIEZORD 30861
17-03-17 23:29:08.198 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:08.198 -07 000000610 INF: Z Motor: Piezo is near 45.9 V (nominally 0 to 100 V), expect near 55.3 V, since DAC is at 5.531 V. Piezo Error = -9.4 V.
17-03-17 23:29:08.198 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.9 um, Read 10 ADC samples: Avg = 35120 (-165.1 uncal um), Error = 0.8 uncal um, Median = 35118 (-165.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35115 (-165.0 uncal um), Max = 35127 (-165.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:29:08.198 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35120, posNoise = 7, negNoise = 5
17-03-17 23:29:08.198 -07 000000610 INF: Z Motor: After move to -0.165924, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:29:08.198 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 23:29:08.198 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:29:08.198 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:29:08.198 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:29:08.198 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:29:08.198 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:29:08.198 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:29:08.198 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:29:08.198 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:29:08.198 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:29:08.198 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:29:08.198 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:29:08.198 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:29:08.208 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:29:08.208 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:29:08.208 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:29:08.208 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:29:08.218 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 23:29:08.218 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:29:08.218 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 23:29:08.218 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:29:08.218 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 476 476 229 229 36422 150\n [Camera]
17-03-17 23:29:08.418 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:29:08.898 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 668
17-03-17 23:29:08.898 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 668
17-03-17 23:29:08.898 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:29:08.898 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 668
17-03-17 23:29:08.898 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 668
17-03-17 23:29:08.898 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:29:08.908 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:29:08.908 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 23:29:08.908 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:29:08.908 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 23:29:09.088 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36422 861
17-03-17 23:29:09.238 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1011
17-03-17 23:29:09.278 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 23:29:09.278 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 23:29:09.278 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:29:09.288 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:29:09.288 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 23:29:09.288 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 23:29:09.288 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 23:29:09.288 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:29:09.288 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:29:09.298 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 23:29:09.468 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1242
17-03-17 23:29:09.468 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1242
17-03-17 23:29:09.478 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:29:09.478 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:29:09.478 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1145516880, 0x0, 391868352) start.
17-03-17 23:29:09.478 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1242
17-03-17 23:29:09.478 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1242
17-03-17 23:29:09.478 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:29:09.478 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:29:09.478 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 23:29:09.658 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP 1433
17-03-17 23:29:09.658 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:29:09.658 -07 000000610 INF: FPGA: 'CAMDBLSNAP 476 476 229 229 36422 150' command took 2 ms to send, 1429 ms to get response, and 1440 ms overall
17-03-17 23:29:09.858 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 23:29:09.858 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 23:29:09.858 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:29:09.868 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:29:09.868 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1145516880, 0x0, 391868352) end. Duration was 394 ms.
17-03-17 23:29:09.868 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 23:29:09.868 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:29:09.868 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 23:29:09.868 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:29:09.868 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms.
17-03-17 23:29:09.868 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 23:29:09.918 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 41 ms.
17-03-17 23:29:09.918 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 23:29:09.958 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 41 ms.
17-03-17 23:29:09.958 -07 000000610 INF: Move compensator for Bottom-surface imaging.
17-03-17 23:29:09.958 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator]
17-03-17 23:29:09.958 -07 000000433 INF: FPGA: Recv EMCUR 
17-03-17 23:29:09.968 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:29:09.968 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator]
17-03-17 23:29:10.128 -07 000000409 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 3.983999,
17-03-17 23:29:10.468 -07 000000576 INF: FPGA: Recv EMIN
17-03-17 23:29:10.468 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 492 ms to get response, and 502 ms overall
17-03-17 23:29:10.468 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator]
17-03-17 23:29:10.468 -07 000000433 INF: FPGA: Recv EMCUR 
17-03-17 23:29:10.478 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:29:10.478 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:29:10.478 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83154296875, Z-Position -0.16594168242978. ------
17-03-17 23:29:10.478 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:29:10.478 -07 000000448 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.14001 mm
17-03-17 23:29:10.478 -07 000000448 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:29:10.478 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True)
17-03-17 23:29:10.478 -07 000000561 INF: Y Motor: Moving to 59.9126 mm, started at 74.8315 mm, delta = -14.9189 mm
17-03-17 23:29:10.478 -07 000000433 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:29:10.488 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:29:10.488 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 30586, sync = True, waitForSettling = False)
17-03-17 23:29:10.488 -07 000000576 INF: Z Motor: Moving to -0.140014 mm, started at -0.165942 mm, distance = 25.93 um
17-03-17 23:29:10.488 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:29:10.488 -07 000000475 INF: FPGA: Recv YRDPOS 153256
17-03-17 23:29:10.498 -07 000000561 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:29:10.498 -07 000000561 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:29:10.498 -07 000000576 INF: FPGA: Xmit ZDACW 30586\n [Z Motor]
17-03-17 23:29:10.498 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 23:29:10.498 -07 000000561 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False
17-03-17 23:29:10.498 -07 000000561 INF: Y Motor: Moving to 122701 encoder counts
17-03-17 23:29:10.508 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:29:10.508 -07 000000576 INF: FPGA: 'ZDACW 30586' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:29:10.518 -07 000000561 INF: FPGA: Xmit YMVTO 122701\n [Y Motor]
17-03-17 23:29:10.528 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:29:10.528 -07 000000433 INF: FPGA: Recv ZDACR 30586
17-03-17 23:29:10.538 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:29:10.538 -07 000000576 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet))
17-03-17 23:29:10.708 -07 000000475 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:29:10.708 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 23:29:12.078 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:29:12.078 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 75. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1215, R2=1270, Total=2485. Warn if over 250 bubbles per interval.
17-03-17 23:29:12.138 -07 000000502 INF: FPGA: Recv YMVTO 122703 23903
17-03-17 23:29:12.138 -07 000000561 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1618 ms to get response, and 1643 ms overall
17-03-17 23:29:12.138 -07 000000561 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 23:29:12.138 -07 000000561 INF: Y Motor: To move from 74.832 to 59.913 (-14.919 mm) should take 23871 steps, but required 23903 steps (14.939 mm). Slippage = 0.020 mm (0.00%).
17-03-17 23:29:12.138 -07 000000561 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1644 ms, distance = 14.919 mm, average velocity = 9.075 mm/sec
17-03-17 23:29:14.988 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:29:14.988 -07 000000438 INF: FPGA: Recv YRDPOS 122698
17-03-17 23:29:14.998 -07 000000561 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:29:14.998 -07 000000561 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:29:15.028 -07 000000561 INF: Y Motor: After move to 59.912609, error = -0.001476, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:29:15.028 -07 000000561 INF: Y Motor: Position error after settling = -3 encoder counts (-0.001 mm), Delta during settling = -5 counts (-0.002 mm)
17-03-17 23:29:15.028 -07 000000561 INF: Y Motor: Moved to 59.9111 after 4545 ms
17-03-17 23:29:15.028 -07 000000448 INF: Z Motor: EndOfMoveAbsStepped: target = -0.140014 mm (DAC = 30586)
17-03-17 23:29:15.028 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:15.038 -07 000000480 INF: FPGA: Recv ZSGSRD 31087
17-03-17 23:29:15.038 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 23:29:15.038 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:15.038 -07 000000409 INF: FPGA: Recv ZSGSRD 31084
17-03-17 23:29:15.048 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:29:15.048 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:15.048 -07 000000459 INF: FPGA: Recv ZSGSRD 31091
17-03-17 23:29:15.058 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:15.058 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:15.058 -07 000000438 INF: FPGA: Recv ZSGSRD 31086
17-03-17 23:29:15.068 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:15.068 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:15.068 -07 000000541 INF: FPGA: Recv ZSGSRD 31087
17-03-17 23:29:15.078 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:15.078 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:15.078 -07 000000486 INF: FPGA: Recv ZSGSRD 31085
17-03-17 23:29:15.088 -07 000000448 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:15.088 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:15.088 -07 000000438 INF: FPGA: Recv ZSGSRD 31083
17-03-17 23:29:15.098 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:15.098 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:15.098 -07 000000576 INF: FPGA: Recv ZSGSRD 31082
17-03-17 23:29:15.108 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:15.108 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:15.108 -07 000000541 INF: FPGA: Recv ZSGSRD 31096
17-03-17 23:29:15.118 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:15.118 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:15.118 -07 000000502 INF: FPGA: Recv ZSGSRD 31078
17-03-17 23:29:15.128 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:15.128 -07 000000448 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:29:15.128 -07 000000627 INF: FPGA: Recv ZPIEZORD 26622
17-03-17 23:29:15.138 -07 000000448 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:15.138 -07 000000448 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.7 V, since DAC is at 4.667 V. Piezo Error = -9.8 V.
17-03-17 23:29:15.138 -07 000000448 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.0 um, Read 10 ADC samples: Avg = 31086 (-139.2 uncal um), Error = 0.8 uncal um, Median = 31086 (-139.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 31078 (-139.2 uncal um), Max = 31096 (-139.3 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 23:29:15.138 -07 000000448 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31086, posNoise = 10, negNoise = 8
17-03-17 23:29:15.138 -07 000000448 INF: Z Motor: After move to -0.140014, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:29:15.138 -07 000000448 INF: Z Motor: Settle wait time = 4547 ms, measure time = 104 ms (allowed 150 ms), total time = 4651 ms
17-03-17 23:29:15.138 -07 000000448 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 23:29:15.188 -07 000000448 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4705 ms
17-03-17 23:29:15.188 -07 000000448 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:29:15.188 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:29:15.188 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:29:15.188 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:29:15.188 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:29:15.188 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:29:15.188 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:29:15.188 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:29:15.188 -07 000000433 INF: Camera: sBCa_SetPowerMode(785074288, 1) start.
17-03-17 23:29:15.208 -07 000000433 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 19 ms.
17-03-17 23:29:15.208 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:29:15.218 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:29:15.218 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:29:15.218 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms.
17-03-17 23:29:15.218 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 32 ms.
17-03-17 23:29:15.228 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:29:15.268 -07 000000475 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:29:15.468 -07 000000448 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:29:15.468 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:29:15.468 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:29:15.468 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-17 23:29:15.488 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 3.970374,
17-03-17 23:29:15.508 -07 000000512 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:29:15.508 -07 000000561 INF: FPGA: Recv CAMSNAP
17-03-17 23:29:15.508 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 277 ms to get response, and 284 ms overall
17-03-17 23:29:15.588 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 115 ms.
17-03-17 23:29:15.588 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:29:15.588 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:29:15.588 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms.
17-03-17 23:29:15.608 -07 000000438 INF: Image SNR check: start
17-03-17 23:29:15.608 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:29:15.608 -07 000000486 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:29:15.618 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:29:15.618 -07 000000459 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:29:15.618 -07 000000438 INF: Image SNR check: pass  [peak (Max-Min)=51.83]
17-03-17 23:29:15.618 -07 000000438 INF: Autofocus start
17-03-17 23:29:15.618 -07 000000438 INF: MeasureProfile start
17-03-17 23:29:15.638 -07 000000438 INF: MeasureProfile done
17-03-17 23:29:15.638 -07 000000438 INF: X=-16  Z correction [um]=-0.08128808
17-03-17 23:29:15.638 -07 000000438 INF: Autofocus finished
17-03-17 23:29:15.818 -07 000000618 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:29:15.818 -07 000000459 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:29:15.818 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.9111328125, Z-position -0.140026410649916. ----------
17-03-17 23:29:15.818 -07 000000610 INF: Cycle	76	Tile	1	Exposure Settings		A	476	G	229	T	229	C	476
17-03-17 23:29:15.828 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29081, sync = True, waitForSettling = True)
17-03-17 23:29:15.828 -07 000000610 INF: Z Motor: Moving to -0.133124 mm, started at -0.140026 mm, distance = 6.90 um
17-03-17 23:29:15.828 -07 000000610 INF: FPGA: Xmit ZDACW 29081\n [Z Motor]
17-03-17 23:29:15.828 -07 000000409 INF: FPGA: Recv ZDACW
17-03-17 23:29:15.838 -07 000000610 INF: FPGA: 'ZDACW 29081' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:29:15.838 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:29:15.838 -07 000000512 INF: FPGA: Recv ZDACR 29081
17-03-17 23:29:15.848 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:15.848 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:29:15.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:15.998 -07 000000438 INF: FPGA: Recv ZSGSRD 30017
17-03-17 23:29:16.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:16.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:16.008 -07 000000623 INF: FPGA: Recv ZSGSRD 30002
17-03-17 23:29:16.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:16.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:16.018 -07 000000512 INF: FPGA: Recv ZSGSRD 30013
17-03-17 23:29:16.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:16.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:16.028 -07 000000433 INF: FPGA: Recv ZSGSRD 30016
17-03-17 23:29:16.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:16.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:16.038 -07 000000480 INF: FPGA: Recv ZSGSRD 30012
17-03-17 23:29:16.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:16.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:16.048 -07 000000541 INF: FPGA: Recv ZSGSRD 30013
17-03-17 23:29:16.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:16.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:16.058 -07 000000561 INF: FPGA: Recv ZSGSRD 30007
17-03-17 23:29:16.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:16.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:16.068 -07 000000486 INF: FPGA: Recv ZSGSRD 30012
17-03-17 23:29:16.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:16.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:16.078 -07 000000502 INF: FPGA: Recv ZSGSRD 30017
17-03-17 23:29:16.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:16.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:16.088 -07 000000459 INF: FPGA: Recv ZSGSRD 30005
17-03-17 23:29:16.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:16.098 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:29:16.098 -07 000000561 INF: FPGA: Recv ZPIEZORD 25466
17-03-17 23:29:16.108 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:16.108 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.437 V. Piezo Error = -10.0 V.
17-03-17 23:29:16.108 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.1 um, Read 10 ADC samples: Avg = 30011 (-132.3 uncal um), Error = 0.8 uncal um, Median = 30012 (-132.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30002 (-132.3 uncal um), Max = 30017 (-132.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 23:29:16.108 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30011, posNoise = 6, negNoise = 9
17-03-17 23:29:16.108 -07 000000610 INF: Z Motor: After move to -0.133124, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:29:16.108 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 23:29:16.108 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:29:16.108 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:29:16.108 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:29:16.108 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:29:16.108 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:29:16.108 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:29:16.108 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:29:16.108 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:29:16.108 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:29:16.108 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:29:16.108 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:29:16.108 -07 000000480 INF: Camera: sBCa_SetPowerMode(785074704, 1) start.
17-03-17 23:29:16.118 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 23:29:16.118 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:29:16.128 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 23:29:16.128 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:29:16.138 -07 000000480 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 21 ms.
17-03-17 23:29:16.138 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:29:16.138 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 23:29:16.138 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:29:16.148 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 23:29:16.148 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 40 ms.
17-03-17 23:29:16.158 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 476 476 229 229 29257 150\n [Camera]
17-03-17 23:29:16.348 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:29:16.828 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 668
17-03-17 23:29:16.828 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 668
17-03-17 23:29:16.828 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:29:16.828 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:29:16.828 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 23:29:16.828 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 668
17-03-17 23:29:16.828 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 668
17-03-17 23:29:16.838 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:29:16.838 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:29:16.838 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 23:29:17.018 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29257 861
17-03-17 23:29:17.078 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:29:17.078 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 75. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1215, R2=1270, Total=2485. Warn if over 250 bubbles per interval.
17-03-17 23:29:17.178 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1011
17-03-17 23:29:17.218 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 23:29:17.218 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 23:29:17.218 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:29:17.218 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 385 ms.
17-03-17 23:29:17.218 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 23:29:17.218 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:29:17.218 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:29:17.218 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 23:29:17.228 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:29:17.228 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 23:29:17.398 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1240
17-03-17 23:29:17.398 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1240
17-03-17 23:29:17.398 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:29:17.398 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:29:17.398 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 23:29:17.408 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1240
17-03-17 23:29:17.408 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1240
17-03-17 23:29:17.408 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:29:17.408 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:29:17.408 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 23:29:17.588 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1432
17-03-17 23:29:17.598 -07 000000433 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:29:17.598 -07 000000610 INF: FPGA: 'CAMDBLSNAP 476 476 229 229 29257 150' command took 2 ms to send, 1430 ms to get response, and 1439 ms overall
17-03-17 23:29:17.598 -07 000000610 INF: Skipping AutoFocus in Tile 2: adopting Best-Z from the cache: -0.133183
17-03-17 23:29:17.598 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13318 mm
17-03-17 23:29:17.598 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:29:17.598 -07 000000475 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True)
17-03-17 23:29:17.598 -07 000000475 INF: Y Motor: Moving to 60.7426 mm, started at 59.9111 mm, delta = 0.8315 mm
17-03-17 23:29:17.598 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:29:17.598 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 29094, sync = True, waitForSettling = False)
17-03-17 23:29:17.598 -07 000000438 INF: Z Motor: Moving to -0.133184 mm, started at -0.133120 mm, distance = -0.06 um
17-03-17 23:29:17.598 -07 000000433 INF: FPGA: Recv YRDPOS 122698
17-03-17 23:29:17.608 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:29:17.608 -07 000000475 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:29:17.608 -07 000000475 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:29:17.728 -07 000000475 INF: Y Motor: Moving 1330 steps2
17-03-17 23:29:17.728 -07 000000438 INF: FPGA: Xmit ZDACW 29094\n [Z Motor]
17-03-17 23:29:17.728 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 23:29:17.738 -07 000000475 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:29:17.738 -07 000000438 INF: FPGA: 'ZDACW 29094' command took 121 ms to send, 0 ms to get response, and 134 ms overall
17-03-17 23:29:17.748 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:29:17.748 -07 000000541 INF: FPGA: Recv ZDACR 29094
17-03-17 23:29:17.758 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:29:17.758 -07 000000438 INF: Z Motor: MoveAbsStepped took 155 ms (did NOT wait for settling yet))
17-03-17 23:29:17.798 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 391 ms.
17-03-17 23:29:17.798 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 23:29:17.798 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:29:17.798 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 23:29:17.798 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 23:29:17.798 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:29:17.798 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:29:17.808 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 23:29:17.808 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms.
17-03-17 23:29:17.808 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms.
17-03-17 23:29:18.118 -07 000000459 INF: FPGA: Recv YMVTILE
17-03-17 23:29:18.118 -07 000000475 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 390 ms overall
17-03-17 23:29:18.148 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:29:18.148 -07 000000409 INF: FPGA: Recv YRDPOS 124381
17-03-17 23:29:18.158 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:29:18.158 -07 000000475 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:29:18.158 -07 000000475 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm)
17-03-17 23:29:18.158 -07 000000475 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.831 mm, average velocity = 2.132 mm/sec
17-03-17 23:29:19.108 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:29:19.108 -07 000000576 INF: FPGA: Recv YRDPOS 124381
17-03-17 23:29:19.118 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:19.118 -07 000000475 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:29:19.138 -07 000000475 INF: Y Motor: After move to 60.742607, error = -0.009697, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:29:19.138 -07 000000475 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:29:19.138 -07 000000475 INF: Y Motor: Moved to 60.7329 after 1542 ms (table move)
17-03-17 23:29:19.138 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133184 mm (DAC = 29094)
17-03-17 23:29:19.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:19.148 -07 000000627 INF: FPGA: Recv ZSGSRD 30024
17-03-17 23:29:19.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:29:19.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:19.158 -07 000000576 INF: FPGA: Recv ZSGSRD 30020
17-03-17 23:29:19.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:19.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:19.168 -07 000000475 INF: FPGA: Recv ZSGSRD 30015
17-03-17 23:29:19.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:19.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:19.178 -07 000000409 INF: FPGA: Recv ZSGSRD 30018
17-03-17 23:29:19.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:19.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:19.188 -07 000000618 INF: FPGA: Recv ZSGSRD 30023
17-03-17 23:29:19.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:19.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:19.198 -07 000000502 INF: FPGA: Recv ZSGSRD 30023
17-03-17 23:29:19.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:19.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:19.208 -07 000000512 INF: FPGA: Recv ZSGSRD 30024
17-03-17 23:29:19.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:19.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:19.218 -07 000000438 INF: FPGA: Recv ZSGSRD 30027
17-03-17 23:29:19.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:19.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:19.228 -07 000000561 INF: FPGA: Recv ZSGSRD 30034
17-03-17 23:29:19.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:19.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:19.238 -07 000000502 INF: FPGA: Recv ZSGSRD 30019
17-03-17 23:29:19.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:19.248 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:29:19.248 -07 000000459 INF: FPGA: Recv ZPIEZORD 25569
17-03-17 23:29:19.258 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:19.258 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.439 V. Piezo Error = -9.8 V.
17-03-17 23:29:19.258 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.2 um, Read 10 ADC samples: Avg = 30023 (-132.4 uncal um), Error = 0.8 uncal um, Median = 30023 (-132.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 30015 (-132.4 uncal um), Max = 30034 (-132.5 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 23:29:19.258 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30023, posNoise = 11, negNoise = 8
17-03-17 23:29:19.258 -07 000000610 INF: Z Motor: After move to -0.133184, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:29:19.258 -07 000000610 INF: Z Motor: Settle wait time = 1544 ms, measure time = 111 ms (allowed 150 ms), total time = 1655 ms
17-03-17 23:29:19.258 -07 000000610 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 23:29:19.298 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1697 ms
17-03-17 23:29:19.298 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:29:19.298 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73291015625, Z-position -0.133197473143224. ----------
17-03-17 23:29:19.298 -07 000000610 INF: Cycle	76	Tile	2	Exposure Settings		A	476	G	229	T	229	C	476
17-03-17 23:29:19.298 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28917, sync = True, waitForSettling = True)
17-03-17 23:29:19.298 -07 000000610 INF: Z Motor: Moving to -0.132374 mm, started at -0.133197 mm, distance = 0.82 um
17-03-17 23:29:19.298 -07 000000610 INF: FPGA: Xmit ZDACW 28917\n [Z Motor]
17-03-17 23:29:19.298 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 23:29:19.308 -07 000000610 INF: FPGA: 'ZDACW 28917' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:29:19.308 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:29:19.308 -07 000000480 INF: FPGA: Recv ZDACR 28917
17-03-17 23:29:19.318 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:19.318 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:29:19.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:19.468 -07 000000486 INF: FPGA: Recv ZSGSRD 29898
17-03-17 23:29:19.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:29:19.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:19.478 -07 000000475 INF: FPGA: Recv ZSGSRD 29893
17-03-17 23:29:19.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:19.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:19.488 -07 000000438 INF: FPGA: Recv ZSGSRD 29891
17-03-17 23:29:19.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:19.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:19.498 -07 000000448 INF: FPGA: Recv ZSGSRD 29899
17-03-17 23:29:19.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:19.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:19.508 -07 000000576 INF: FPGA: Recv ZSGSRD 29899
17-03-17 23:29:19.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:19.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:19.518 -07 000000512 INF: FPGA: Recv ZSGSRD 29895
17-03-17 23:29:19.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:19.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:19.528 -07 000000459 INF: FPGA: Recv ZSGSRD 29893
17-03-17 23:29:19.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:19.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:19.538 -07 000000433 INF: FPGA: Recv ZSGSRD 29897
17-03-17 23:29:19.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:19.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:19.548 -07 000000576 INF: FPGA: Recv ZSGSRD 29901
17-03-17 23:29:19.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:19.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:19.558 -07 000000475 INF: FPGA: Recv ZSGSRD 29891
17-03-17 23:29:19.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:19.568 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:29:19.568 -07 000000541 INF: FPGA: Recv ZPIEZORD 25372
17-03-17 23:29:19.578 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:19.578 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.412 V. Piezo Error = -9.9 V.
17-03-17 23:29:19.578 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.4 um, Read 10 ADC samples: Avg = 29896 (-131.6 uncal um), Error = 0.8 uncal um, Median = 29896 (-131.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29891 (-131.6 uncal um), Max = 29901 (-131.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:29:19.578 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29896, posNoise = 5, negNoise = 5
17-03-17 23:29:19.578 -07 000000610 INF: Z Motor: After move to -0.132374, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:29:19.578 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 23:29:19.578 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:29:19.578 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:29:19.578 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:29:19.578 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:29:19.578 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:29:19.578 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:29:19.578 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:29:19.578 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:29:19.578 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:29:19.578 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:29:19.578 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:29:19.578 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:29:19.578 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 23:29:19.578 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:29:19.588 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:29:19.588 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:29:19.598 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-17 23:29:19.598 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 23:29:19.598 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms.
17-03-17 23:29:19.598 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 23:29:19.598 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 476 476 229 229 29094 150\n [Camera]
17-03-17 23:29:19.798 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:29:20.278 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 669
17-03-17 23:29:20.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 669
17-03-17 23:29:20.278 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:29:20.278 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 669
17-03-17 23:29:20.278 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 669
17-03-17 23:29:20.278 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:29:20.278 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:29:20.278 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 23:29:20.288 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:29:20.288 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1145516880, 0x0, 418435064) start.
17-03-17 23:29:20.468 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29094 861
17-03-17 23:29:20.618 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1011
17-03-17 23:29:20.678 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 396 ms.
17-03-17 23:29:20.678 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 23:29:20.678 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:29:20.688 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:29:20.688 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms.
17-03-17 23:29:20.688 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1145516880, 0x0, 418435064) end. Duration was 397 ms.
17-03-17 23:29:20.688 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 23:29:20.688 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:29:20.688 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:29:20.698 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms.
17-03-17 23:29:20.848 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 3.977204,
17-03-17 23:29:20.848 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1240
17-03-17 23:29:20.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1240
17-03-17 23:29:20.848 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:29:20.858 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1240
17-03-17 23:29:20.858 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1240
17-03-17 23:29:20.858 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:29:20.858 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:29:20.858 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 23:29:20.868 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:29:20.868 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 23:29:21.048 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP 1436
17-03-17 23:29:21.048 -07 000000475 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:29:21.048 -07 000000610 INF: FPGA: 'CAMDBLSNAP 476 476 229 229 29094 150' command took 2 ms to send, 1431 ms to get response, and 1443 ms overall
17-03-17 23:29:21.048 -07 000000610 INF: Skipping AutoFocus in Tile 3: adopting Best-Z from the cache: -0.133143
17-03-17 23:29:21.048 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13314 mm
17-03-17 23:29:21.048 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:29:21.048 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True)
17-03-17 23:29:21.048 -07 000000623 INF: Y Motor: Moving to 61.5726 mm, started at 60.7329 mm, delta = 0.8397 mm
17-03-17 23:29:21.048 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:29:21.048 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 29085, sync = True, waitForSettling = False)
17-03-17 23:29:21.048 -07 000000480 INF: Z Motor: Moving to -0.133143 mm, started at -0.132382 mm, distance = -0.76 um
17-03-17 23:29:21.048 -07 000000475 INF: FPGA: Recv YRDPOS 124382
17-03-17 23:29:21.058 -07 000000480 INF: FPGA: Xmit ZDACW 29085\n [Z Motor]
17-03-17 23:29:21.058 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:29:21.058 -07 000000623 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:29:21.058 -07 000000576 INF: FPGA: Recv ZDACW
17-03-17 23:29:21.058 -07 000000623 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:29:21.058 -07 000000623 INF: Y Motor: Moving 1343 steps-20
17-03-17 23:29:21.068 -07 000000480 INF: FPGA: 'ZDACW 29085' command took 0 ms to send, 0 ms to get response, and 14 ms overall
17-03-17 23:29:21.068 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:29:21.068 -07 000000475 INF: FPGA: Recv ZDACR 29085
17-03-17 23:29:21.078 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:29:21.078 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:21.078 -07 000000480 INF: Z Motor: MoveAbsStepped took 24 ms (did NOT wait for settling yet))
17-03-17 23:29:21.258 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 397 ms.
17-03-17 23:29:21.258 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms.
17-03-17 23:29:21.258 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:29:21.258 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 396 ms.
17-03-17 23:29:21.258 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 23:29:21.258 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:29:21.258 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:29:21.258 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms.
17-03-17 23:29:21.268 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:29:21.268 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 23:29:21.448 -07 000000541 INF: FPGA: Recv YMVTILE
17-03-17 23:29:21.448 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 390 ms overall
17-03-17 23:29:21.488 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:29:21.498 -07 000000448 INF: FPGA: Recv YRDPOS 126083
17-03-17 23:29:21.498 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 23:29:21.498 -07 000000623 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:29:21.498 -07 000000623 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 23:29:21.498 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 390 ms, distance = 0.840 mm, average velocity = 2.153 mm/sec
17-03-17 23:29:22.068 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:29:22.068 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 75. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1215, R2=1270, Total=2485. Warn if over 250 bubbles per interval.
17-03-17 23:29:22.448 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:29:22.448 -07 000000502 INF: FPGA: Recv YRDPOS 126083
17-03-17 23:29:22.458 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:22.458 -07 000000623 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:29:22.478 -07 000000623 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:29:22.478 -07 000000623 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:29:22.478 -07 000000623 INF: Y Motor: Moved to 61.5640 after 1430 ms (table move)
17-03-17 23:29:22.478 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133143 mm (DAC = 29085)
17-03-17 23:29:22.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:22.488 -07 000000480 INF: FPGA: Recv ZSGSRD 30019
17-03-17 23:29:22.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall
17-03-17 23:29:22.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:22.488 -07 000000576 INF: FPGA: Recv ZSGSRD 30015
17-03-17 23:29:22.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:29:22.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:22.498 -07 000000502 INF: FPGA: Recv ZSGSRD 30012
17-03-17 23:29:22.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:22.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:22.508 -07 000000512 INF: FPGA: Recv ZSGSRD 30017
17-03-17 23:29:22.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:22.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:22.518 -07 000000433 INF: FPGA: Recv ZSGSRD 30016
17-03-17 23:29:22.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:22.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:22.528 -07 000000627 INF: FPGA: Recv ZSGSRD 30018
17-03-17 23:29:22.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:22.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:22.538 -07 000000576 INF: FPGA: Recv ZSGSRD 30024
17-03-17 23:29:22.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:22.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:22.548 -07 000000502 INF: FPGA: Recv ZSGSRD 30006
17-03-17 23:29:22.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:22.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:22.558 -07 000000409 INF: FPGA: Recv ZSGSRD 30008
17-03-17 23:29:22.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:22.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:22.568 -07 000000541 INF: FPGA: Recv ZSGSRD 30011
17-03-17 23:29:22.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:22.578 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:29:22.578 -07 000000480 INF: FPGA: Recv ZPIEZORD 25577
17-03-17 23:29:22.588 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:22.588 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.438 V. Piezo Error = -9.7 V.
17-03-17 23:29:22.588 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.1 um, Read 10 ADC samples: Avg = 30015 (-132.4 uncal um), Error = 0.8 uncal um, Median = 30016 (-132.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30006 (-132.3 uncal um), Max = 30024 (-132.4 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 23:29:22.588 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30015, posNoise = 9, negNoise = 9
17-03-17 23:29:22.588 -07 000000610 INF: Z Motor: After move to -0.133143, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:29:22.588 -07 000000610 INF: Z Motor: Settle wait time = 1432 ms, measure time = 102 ms (allowed 150 ms), total time = 1534 ms
17-03-17 23:29:22.588 -07 000000610 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 23:29:22.638 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1586 ms
17-03-17 23:29:22.638 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:29:22.638 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.13314607944609. ----------
17-03-17 23:29:22.638 -07 000000610 INF: Cycle	76	Tile	3	Exposure Settings		A	476	G	229	T	229	C	476
17-03-17 23:29:22.638 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28908, sync = True, waitForSettling = True)
17-03-17 23:29:22.638 -07 000000610 INF: Z Motor: Moving to -0.132332 mm, started at -0.133146 mm, distance = 0.81 um
17-03-17 23:29:22.638 -07 000000610 INF: FPGA: Xmit ZDACW 28908\n [Z Motor]
17-03-17 23:29:22.638 -07 000000623 INF: FPGA: Recv ZDACW
17-03-17 23:29:22.648 -07 000000610 INF: FPGA: 'ZDACW 28908' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:29:22.648 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:29:22.648 -07 000000627 INF: FPGA: Recv ZDACR 28908
17-03-17 23:29:22.658 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:22.658 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:29:22.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:22.808 -07 000000576 INF: FPGA: Recv ZSGSRD 29889
17-03-17 23:29:22.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:29:22.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:22.818 -07 000000512 INF: FPGA: Recv ZSGSRD 29892
17-03-17 23:29:22.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:22.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:22.828 -07 000000459 INF: FPGA: Recv ZSGSRD 29892
17-03-17 23:29:22.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:22.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:22.838 -07 000000561 INF: FPGA: Recv ZSGSRD 29893
17-03-17 23:29:22.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:22.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:22.848 -07 000000475 INF: FPGA: Recv ZSGSRD 29892
17-03-17 23:29:22.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:22.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:22.858 -07 000000433 INF: FPGA: Recv ZSGSRD 29890
17-03-17 23:29:22.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:22.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:22.868 -07 000000409 INF: FPGA: Recv ZSGSRD 29885
17-03-17 23:29:22.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:22.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:22.878 -07 000000502 INF: FPGA: Recv ZSGSRD 29893
17-03-17 23:29:22.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:22.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:22.888 -07 000000409 INF: FPGA: Recv ZSGSRD 29888
17-03-17 23:29:22.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:22.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:22.898 -07 000000541 INF: FPGA: Recv ZSGSRD 29889
17-03-17 23:29:22.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:22.908 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:29:22.908 -07 000000475 INF: FPGA: Recv ZPIEZORD 25402
17-03-17 23:29:22.918 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:22.918 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.411 V. Piezo Error = -9.8 V.
17-03-17 23:29:22.918 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.3 um, Read 10 ADC samples: Avg = 29890 (-131.6 uncal um), Error = 0.8 uncal um, Median = 29891 (-131.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29885 (-131.5 uncal um), Max = 29893 (-131.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:29:22.918 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29890, posNoise = 3, negNoise = 5
17-03-17 23:29:22.918 -07 000000610 INF: Z Motor: After move to -0.132332, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:29:22.918 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 23:29:22.918 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:29:22.918 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:29:22.918 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:29:22.918 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:29:22.918 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:29:22.918 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:29:22.918 -07 000000409 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:29:22.918 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:29:22.918 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:29:22.918 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:29:22.918 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:29:22.918 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:29:22.928 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:29:22.928 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:29:22.928 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:29:22.928 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:29:22.928 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 23:29:22.928 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:29:22.928 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 23:29:22.928 -07 000000409 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:29:22.938 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 476 476 229 229 29085 150\n [Camera]
17-03-17 23:29:23.138 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:29:23.608 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 668
17-03-17 23:29:23.608 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 668
17-03-17 23:29:23.618 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:29:23.618 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:29:23.618 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 23:29:23.618 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 668
17-03-17 23:29:23.618 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 668
17-03-17 23:29:23.618 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:29:23.618 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:29:23.618 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) start.
17-03-17 23:29:23.808 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29085 861
17-03-17 23:29:23.958 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1011
17-03-17 23:29:23.988 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2317127784, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 23:29:23.988 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 23:29:23.988 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:29:23.988 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 23:29:23.988 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 23:29:23.988 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:29:23.998 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 23:29:23.998 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms.
17-03-17 23:29:23.998 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 23:29:24.008 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 23:29:24.188 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1240
17-03-17 23:29:24.188 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1240
17-03-17 23:29:24.188 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:29:24.318 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1240
17-03-17 23:29:24.318 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1240
17-03-17 23:29:24.318 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:29:24.328 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:29:24.328 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 23:29:24.328 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:29:24.328 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1145516880, 0x0, 418435064) start.
17-03-17 23:29:24.378 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1434
17-03-17 23:29:24.378 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:29:24.378 -07 000000610 INF: FPGA: 'CAMDBLSNAP 476 476 229 229 29085 150' command took 2 ms to send, 1434 ms to get response, and 1441 ms overall
17-03-17 23:29:24.378 -07 000000610 INF: Skipping AutoFocus in Tile 4: adopting Best-Z from the cache: -0.132787
17-03-17 23:29:24.378 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13279 mm
17-03-17 23:29:24.378 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:29:24.378 -07 000000475 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True)
17-03-17 23:29:24.378 -07 000000475 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm
17-03-17 23:29:24.378 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:29:24.388 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 29007, sync = True, waitForSettling = False)
17-03-17 23:29:24.388 -07 000000618 INF: Z Motor: Moving to -0.132786 mm, started at -0.132343 mm, distance = -0.44 um
17-03-17 23:29:24.388 -07 000000561 INF: FPGA: Recv YRDPOS 126083
17-03-17 23:29:24.398 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:29:24.398 -07 000000475 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:29:24.398 -07 000000475 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:29:24.398 -07 000000475 INF: Y Motor: Moving 1342 steps-18
17-03-17 23:29:24.398 -07 000000618 INF: FPGA: Xmit ZDACW 29007\n [Z Motor]
17-03-17 23:29:24.398 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 23:29:24.408 -07 000000618 INF: FPGA: 'ZDACW 29007' command took 1 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:29:24.408 -07 000000475 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:29:24.418 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:29:24.418 -07 000000502 INF: FPGA: Recv ZDACR 29007
17-03-17 23:29:24.428 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:29:24.428 -07 000000618 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-17 23:29:24.698 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1145516880, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 23:29:24.698 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 23:29:24.698 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:29:24.708 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 23:29:24.708 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 23:29:24.708 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:29:24.708 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 23:29:24.708 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 23:29:24.708 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 523 ms.
17-03-17 23:29:24.718 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms.
17-03-17 23:29:24.778 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-17 23:29:24.778 -07 000000475 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 23:29:24.818 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:29:24.828 -07 000000623 INF: FPGA: Recv YRDPOS 127786
17-03-17 23:29:24.828 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 23:29:24.828 -07 000000475 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:29:24.828 -07 000000475 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 23:29:24.828 -07 000000475 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.839 mm, average velocity = 2.161 mm/sec
17-03-17 23:29:25.778 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:29:25.778 -07 000000480 INF: FPGA: Recv YRDPOS 127786
17-03-17 23:29:25.788 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:25.788 -07 000000475 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:29:25.808 -07 000000475 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:29:25.808 -07 000000475 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:29:25.808 -07 000000475 INF: Y Motor: Moved to 62.3955 after 1425 ms (table move)
17-03-17 23:29:25.808 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.132786 mm (DAC = 29007)
17-03-17 23:29:25.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:25.818 -07 000000627 INF: FPGA: Recv ZSGSRD 29964
17-03-17 23:29:25.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 23:29:25.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:25.818 -07 000000502 INF: FPGA: Recv ZSGSRD 29959
17-03-17 23:29:25.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:25.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:25.828 -07 000000480 INF: FPGA: Recv ZSGSRD 29958
17-03-17 23:29:25.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:25.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:25.838 -07 000000618 INF: FPGA: Recv ZSGSRD 29963
17-03-17 23:29:25.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:25.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:25.848 -07 000000576 INF: FPGA: Recv ZSGSRD 29960
17-03-17 23:29:25.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:25.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:25.858 -07 000000541 INF: FPGA: Recv ZSGSRD 29964
17-03-17 23:29:25.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:25.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:25.868 -07 000000459 INF: FPGA: Recv ZSGSRD 29954
17-03-17 23:29:25.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:25.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:25.878 -07 000000618 INF: FPGA: Recv ZSGSRD 29949
17-03-17 23:29:25.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:25.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:25.898 -07 000000433 INF: FPGA: Recv ZSGSRD 29967
17-03-17 23:29:25.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:29:25.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:25.908 -07 000000475 INF: FPGA: Recv ZSGSRD 29965
17-03-17 23:29:25.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:25.918 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:29:25.918 -07 000000561 INF: FPGA: Recv ZPIEZORD 25565
17-03-17 23:29:25.928 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:25.928 -07 000000610 INF: Z Motor: Piezo is near 34.6 V (nominally 0 to 100 V), expect near 44.3 V, since DAC is at 4.426 V. Piezo Error = -9.6 V.
17-03-17 23:29:25.928 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.8 um, Read 10 ADC samples: Avg = 29960 (-132.0 uncal um), Error = 0.8 uncal um, Median = 29962 (-132.0 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 29949 (-131.9 uncal um), Max = 29967 (-132.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 23:29:25.928 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29960, posNoise = 7, negNoise = 11
17-03-17 23:29:25.928 -07 000000610 INF: Z Motor: After move to -0.132786, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:29:25.928 -07 000000610 INF: Z Motor: Settle wait time = 1427 ms, measure time = 113 ms (allowed 150 ms), total time = 1540 ms
17-03-17 23:29:25.928 -07 000000610 INF: Z Motor: Waiting extra 37 ms after reading position to reach expected total of 150 ms
17-03-17 23:29:25.968 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1582 ms
17-03-17 23:29:25.968 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:29:25.968 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.132792747778293. ----------
17-03-17 23:29:25.968 -07 000000610 INF: Cycle	76	Tile	4	Exposure Settings		A	476	G	229	T	229	C	476
17-03-17 23:29:25.968 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28831, sync = True, waitForSettling = True)
17-03-17 23:29:25.968 -07 000000610 INF: Z Motor: Moving to -0.131980 mm, started at -0.132793 mm, distance = 0.81 um
17-03-17 23:29:25.968 -07 000000610 INF: FPGA: Xmit ZDACW 28831\n [Z Motor]
17-03-17 23:29:25.968 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 23:29:25.978 -07 000000610 INF: FPGA: 'ZDACW 28831' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:29:25.978 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:29:25.978 -07 000000502 INF: FPGA: Recv ZDACR 28831
17-03-17 23:29:25.988 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:25.988 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:29:26.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:26.138 -07 000000475 INF: FPGA: Recv ZSGSRD 29839
17-03-17 23:29:26.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:29:26.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:26.148 -07 000000561 INF: FPGA: Recv ZSGSRD 29837
17-03-17 23:29:26.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:26.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:26.158 -07 000000618 INF: FPGA: Recv ZSGSRD 29832
17-03-17 23:29:26.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:26.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:26.168 -07 000000627 INF: FPGA: Recv ZSGSRD 29834
17-03-17 23:29:26.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:26.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:26.178 -07 000000475 INF: FPGA: Recv ZSGSRD 29832
17-03-17 23:29:26.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:26.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:26.188 -07 000000512 INF: FPGA: Recv ZSGSRD 29832
17-03-17 23:29:26.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:26.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:26.208 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 3.981281,
17-03-17 23:29:26.208 -07 000000541 INF: FPGA: Recv ZSGSRD 29833
17-03-17 23:29:26.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:29:26.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:26.228 -07 000000459 INF: FPGA: Recv ZSGSRD 29834
17-03-17 23:29:26.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:29:26.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:26.238 -07 000000502 INF: FPGA: Recv ZSGSRD 29837
17-03-17 23:29:26.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:29:26.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:26.268 -07 000000475 INF: FPGA: Recv ZSGSRD 29833
17-03-17 23:29:26.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:29:26.288 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:29:26.288 -07 000000502 INF: FPGA: Recv ZPIEZORD 25400
17-03-17 23:29:26.298 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:29:26.298 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.399 V. Piezo Error = -9.7 V.
17-03-17 23:29:26.298 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.0 um, Read 10 ADC samples: Avg = 29834 (-131.2 uncal um), Error = 0.8 uncal um, Median = 29834 (-131.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29832 (-131.2 uncal um), Max = 29839 (-131.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um)
17-03-17 23:29:26.298 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29834, posNoise = 5, negNoise = 2
17-03-17 23:29:26.298 -07 000000610 INF: Z Motor: After move to -0.131980, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:29:26.298 -07 000000610 INF: Z Motor: MoveAbsStepped took 324 ms)
17-03-17 23:29:26.298 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:29:26.298 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:29:26.298 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:29:26.298 -07 000000409 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:29:26.298 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:29:26.298 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:29:26.298 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:29:26.298 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:29:26.298 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 23:29:26.298 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:29:26.298 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms.
17-03-17 23:29:26.298 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:29:26.308 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:29:26.308 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:29:26.308 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:29:26.308 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:29:26.318 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 23:29:26.318 -07 000000409 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 23:29:26.318 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 23:29:26.318 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 23:29:26.318 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 476 476 229 229 29007 150\n [Camera]
17-03-17 23:29:26.518 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:29:26.998 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 668
17-03-17 23:29:26.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 668
17-03-17 23:29:26.998 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:29:26.998 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:29:26.998 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 23:29:26.998 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 668
17-03-17 23:29:26.998 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 668
17-03-17 23:29:26.998 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:29:26.998 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:29:26.998 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 23:29:27.068 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:29:27.068 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 75. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1215, R2=1270, Total=2485. Warn if over 250 bubbles per interval.
17-03-17 23:29:27.188 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29007 861
17-03-17 23:29:27.338 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1011
17-03-17 23:29:27.378 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 23:29:27.378 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 23:29:27.378 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:29:27.378 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 23:29:27.378 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 23:29:27.378 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:29:27.378 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:29:27.378 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 23:29:27.378 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:29:27.498 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 499 ms.
17-03-17 23:29:27.568 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1240
17-03-17 23:29:27.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1240
17-03-17 23:29:27.568 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:29:27.578 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1240
17-03-17 23:29:27.578 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1240
17-03-17 23:29:27.578 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:29:27.578 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:29:27.578 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 23:29:27.578 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:29:27.578 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1145516880, 0x0, 418435064) start.
17-03-17 23:29:27.758 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP 1433
17-03-17 23:29:27.758 -07 000000409 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:29:27.758 -07 000000610 INF: FPGA: 'CAMDBLSNAP 476 476 229 229 29007 150' command took 2 ms to send, 1428 ms to get response, and 1439 ms overall
17-03-17 23:29:27.768 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:29:27.768 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.3955078125, Z-Position -0.131983297048431. ------
17-03-17 23:29:27.768 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:29:27.768 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13868 mm
17-03-17 23:29:27.768 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:29:27.768 -07 000000623 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:29:27.778 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:29:27.778 -07 000000475 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:29:27.778 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True)
17-03-17 23:29:27.778 -07 000000541 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm
17-03-17 23:29:27.778 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 30294, sync = True, waitForSettling = False)
17-03-17 23:29:27.778 -07 000000486 INF: Z Motor: Moving to -0.138677 mm, started at -0.131983 mm, distance = -6.69 um
17-03-17 23:29:27.788 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:29:27.788 -07 000000618 INF: FPGA: Recv YRDPOS 127786
17-03-17 23:29:27.798 -07 000000486 INF: FPGA: Xmit ZDACW 30294\n [Z Motor]
17-03-17 23:29:27.798 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 23:29:27.798 -07 000000541 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:29:27.798 -07 000000541 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:29:27.798 -07 000000541 INF: Y Motor: Moving 1339 steps-15
17-03-17 23:29:27.798 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 23:29:27.808 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:29:27.808 -07 000000486 INF: FPGA: 'ZDACW 30294' command took 0 ms to send, 0 ms to get response, and 28 ms overall
17-03-17 23:29:27.818 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:29:27.818 -07 000000448 INF: FPGA: Recv ZDACR 30294
17-03-17 23:29:27.828 -07 000000486 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:29:27.828 -07 000000486 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet))
17-03-17 23:29:27.958 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 23:29:27.958 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 23:29:27.958 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:29:27.958 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1145516880, 0x0, 418435064) end. Duration was 378 ms.
17-03-17 23:29:27.958 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 23:29:27.958 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:29:27.968 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:29:27.968 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 23:29:27.968 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:29:27.968 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 23:29:27.978 -07 000000502 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:29:27.978 -07 000000475 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 203 ms overall
17-03-17 23:29:28.178 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-17 23:29:28.178 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 23:29:28.218 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:29:28.228 -07 000000448 INF: FPGA: Recv YRDPOS 129483
17-03-17 23:29:28.238 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:29:28.238 -07 000000541 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:29:28.238 -07 000000541 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm)
17-03-17 23:29:28.238 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.837 mm, average velocity = 2.163 mm/sec
17-03-17 23:29:29.188 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:29:29.188 -07 000000623 INF: FPGA: Recv YRDPOS 129483
17-03-17 23:29:29.198 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:29.198 -07 000000541 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:29:29.218 -07 000000541 INF: Y Motor: After move to 63.232609, error = -0.008488, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:29:29.218 -07 000000541 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:29:29.218 -07 000000541 INF: Y Motor: Moved to 63.2241 after 1445 ms (table move)
17-03-17 23:29:29.218 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138677 mm (DAC = 30294)
17-03-17 23:29:29.218 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:29.228 -07 000000502 INF: FPGA: Recv ZSGSRD 30879
17-03-17 23:29:29.238 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:29:29.238 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:29.238 -07 000000475 INF: FPGA: Recv ZSGSRD 30877
17-03-17 23:29:29.248 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:29.248 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:29.248 -07 000000459 INF: FPGA: Recv ZSGSRD 30880
17-03-17 23:29:29.258 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:29.258 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:29.258 -07 000000541 INF: FPGA: Recv ZSGSRD 30882
17-03-17 23:29:29.268 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:29.268 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:29.268 -07 000000502 INF: FPGA: Recv ZSGSRD 30878
17-03-17 23:29:29.278 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:29.278 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:29.278 -07 000000475 INF: FPGA: Recv ZSGSRD 30888
17-03-17 23:29:29.288 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:29.288 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:29.288 -07 000000459 INF: FPGA: Recv ZSGSRD 30876
17-03-17 23:29:29.298 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:29.298 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:29.298 -07 000000480 INF: FPGA: Recv ZSGSRD 30867
17-03-17 23:29:29.308 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:29.308 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:29.308 -07 000000502 INF: FPGA: Recv ZSGSRD 30875
17-03-17 23:29:29.318 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:29.318 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:29.318 -07 000000409 INF: FPGA: Recv ZSGSRD 30881
17-03-17 23:29:29.328 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:29.328 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:29:29.328 -07 000000475 INF: FPGA: Recv ZPIEZORD 26735
17-03-17 23:29:29.338 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:29.338 -07 000000512 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.623 V. Piezo Error = -9.1 V.
17-03-17 23:29:29.338 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.7 um, Read 10 ADC samples: Avg = 30878 (-137.9 uncal um), Error = 0.8 uncal um, Median = 30878 (-137.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 21 (0.1 uncal um), Min = 30867 (-137.8 uncal um), Max = 30888 (-138.0 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 23:29:29.338 -07 000000512 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30878, posNoise = 10, negNoise = 11
17-03-17 23:29:29.338 -07 000000512 INF: Z Motor: After move to -0.138677, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:29:29.338 -07 000000512 INF: Z Motor: Settle wait time = 1447 ms, measure time = 111 ms (allowed 150 ms), total time = 1558 ms
17-03-17 23:29:29.338 -07 000000512 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 23:29:29.378 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1604 ms
17-03-17 23:29:29.378 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:29:29.378 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:29:29.378 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:29:29.378 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:29:29.378 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:29:29.378 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:29:29.378 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:29:29.378 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:29:29.378 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:29:29.388 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:29:29.388 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:29:29.398 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms.
17-03-17 23:29:29.398 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms.
17-03-17 23:29:29.398 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:29:29.448 -07 000000623 INF: FPGA: Recv @CAMSNAP turning led on 42
17-03-17 23:29:29.648 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 242
17-03-17 23:29:29.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 242
17-03-17 23:29:29.648 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:29:29.648 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-17 23:29:29.678 -07 000000486 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:29:29.678 -07 000000618 INF: FPGA: Recv CAMSNAP
17-03-17 23:29:29.678 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 279 ms to get response, and 285 ms overall
17-03-17 23:29:29.778 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 23:29:29.778 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:29:29.778 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:29:29.778 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 23:29:29.878 -07 000000475 INF: Autofocus start
17-03-17 23:29:29.878 -07 000000475 INF: MeasureProfile start
17-03-17 23:29:29.878 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:29:29.878 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:29:29.888 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:29:29.888 -07 000000433 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:29:29.888 -07 000000475 INF: MeasureProfile done
17-03-17 23:29:29.888 -07 000000475 INF: X=0  Z correction [um]=-0.02394831
17-03-17 23:29:29.888 -07 000000475 INF: Autofocus finished
17-03-17 23:29:30.088 -07 000000438 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:29:30.088 -07 000000433 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 202 ms overall
17-03-17 23:29:30.088 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22412109375, Z-position -0.13869017452443. ----------
17-03-17 23:29:30.088 -07 000000610 INF: Cycle	76	Tile	5	Exposure Settings		A	476	G	229	T	229	C	476
17-03-17 23:29:30.098 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28801, sync = True, waitForSettling = True)
17-03-17 23:29:30.098 -07 000000610 INF: Z Motor: Moving to -0.131843 mm, started at -0.138690 mm, distance = 6.85 um
17-03-17 23:29:30.098 -07 000000610 INF: FPGA: Xmit ZDACW 28801\n [Z Motor]
17-03-17 23:29:30.098 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 23:29:30.108 -07 000000610 INF: FPGA: 'ZDACW 28801' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:30.108 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:29:30.108 -07 000000448 INF: FPGA: Recv ZDACR 28801
17-03-17 23:29:30.118 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:30.118 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:29:30.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:30.268 -07 000000433 INF: FPGA: Recv ZSGSRD 29814
17-03-17 23:29:30.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:30.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:30.278 -07 000000618 INF: FPGA: Recv ZSGSRD 29809
17-03-17 23:29:30.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:30.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:30.288 -07 000000409 INF: FPGA: Recv ZSGSRD 29811
17-03-17 23:29:30.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:30.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:30.298 -07 000000502 INF: FPGA: Recv ZSGSRD 29811
17-03-17 23:29:30.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:30.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:30.308 -07 000000438 INF: FPGA: Recv ZSGSRD 29816
17-03-17 23:29:30.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:30.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:30.318 -07 000000475 INF: FPGA: Recv ZSGSRD 29815
17-03-17 23:29:30.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:30.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:30.328 -07 000000623 INF: FPGA: Recv ZSGSRD 29809
17-03-17 23:29:30.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:30.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:30.338 -07 000000486 INF: FPGA: Recv ZSGSRD 29815
17-03-17 23:29:30.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:30.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:30.348 -07 000000409 INF: FPGA: Recv ZSGSRD 29811
17-03-17 23:29:30.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:30.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:30.358 -07 000000475 INF: FPGA: Recv ZSGSRD 29815
17-03-17 23:29:30.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:30.368 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:29:30.368 -07 000000541 INF: FPGA: Recv ZPIEZORD 25351
17-03-17 23:29:30.378 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:30.378 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.395 V. Piezo Error = -9.8 V.
17-03-17 23:29:30.378 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.8 um, Read 10 ADC samples: Avg = 29813 (-131.1 uncal um), Error = 0.8 uncal um, Median = 29812 (-131.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29809 (-131.0 uncal um), Max = 29816 (-131.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:29:30.378 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29813, posNoise = 3, negNoise = 4
17-03-17 23:29:30.378 -07 000000610 INF: Z Motor: After move to -0.131843, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:29:30.378 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 23:29:30.378 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:29:30.378 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:29:30.378 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:29:30.378 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:29:30.378 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:29:30.378 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:29:30.378 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:29:30.378 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:29:30.378 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:29:30.378 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:29:30.378 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:29:30.378 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:29:30.388 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms.
17-03-17 23:29:30.388 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:29:30.388 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 23:29:30.388 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:29:30.388 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 9 ms.
17-03-17 23:29:30.398 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 23:29:30.398 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 23:29:30.398 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 23:29:30.398 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 476 476 229 229 28978 150\n [Camera]
17-03-17 23:29:30.598 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:29:31.068 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 668
17-03-17 23:29:31.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 668
17-03-17 23:29:31.078 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:29:31.078 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:29:31.078 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 23:29:31.078 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 668
17-03-17 23:29:31.078 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 668
17-03-17 23:29:31.078 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:29:31.078 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:29:31.078 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 23:29:31.268 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28978 861
17-03-17 23:29:31.418 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1011
17-03-17 23:29:31.458 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 386 ms.
17-03-17 23:29:31.458 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 23:29:31.458 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:29:31.468 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 23:29:31.468 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:29:31.468 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 23:29:31.468 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms.
17-03-17 23:29:31.468 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:29:31.468 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:29:31.478 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 23:29:31.608 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 3.981281,
17-03-17 23:29:31.648 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1241
17-03-17 23:29:31.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1241
17-03-17 23:29:31.648 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:29:31.648 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:29:31.648 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 23:29:31.648 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1241
17-03-17 23:29:31.648 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1241
17-03-17 23:29:31.648 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:29:31.648 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:29:31.648 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 23:29:31.838 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 1433
17-03-17 23:29:31.838 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:29:31.838 -07 000000610 INF: FPGA: 'CAMDBLSNAP 476 476 229 229 28978 150' command took 2 ms to send, 1433 ms to get response, and 1439 ms overall
17-03-17 23:29:31.958 -07 000000610 INF: Skipping AutoFocus in Tile 6: adopting Best-Z from the cache: -0.132278
17-03-17 23:29:31.958 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13228 mm
17-03-17 23:29:31.958 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:29:31.958 -07 000000433 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True)
17-03-17 23:29:31.958 -07 000000433 INF: Y Motor: Moving to 64.0626 mm, started at 63.2241 mm, delta = 0.8385 mm
17-03-17 23:29:31.958 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:29:31.958 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 28896, sync = True, waitForSettling = False)
17-03-17 23:29:31.958 -07 000000486 INF: Z Motor: Moving to -0.132277 mm, started at -0.131848 mm, distance = -0.43 um
17-03-17 23:29:31.958 -07 000000623 INF: FPGA: Recv YRDPOS 129483
17-03-17 23:29:31.968 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:29:31.968 -07 000000433 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:29:31.968 -07 000000433 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:29:31.968 -07 000000433 INF: Y Motor: Moving 1342 steps-17
17-03-17 23:29:31.968 -07 000000486 INF: FPGA: Xmit ZDACW 28896\n [Z Motor]
17-03-17 23:29:31.968 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 23:29:31.978 -07 000000486 INF: FPGA: 'ZDACW 28896' command took 1 ms to send, 0 ms to get response, and 13 ms overall
17-03-17 23:29:31.978 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:29:31.978 -07 000000438 INF: FPGA: Recv ZDACR 28896
17-03-17 23:29:31.988 -07 000000433 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:29:31.988 -07 000000486 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:31.988 -07 000000486 INF: Z Motor: MoveAbsStepped took 23 ms (did NOT wait for settling yet))
17-03-17 23:29:32.028 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 23:29:32.028 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 23:29:32.028 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:29:32.038 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 23:29:32.038 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 23:29:32.038 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:29:32.038 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:29:32.038 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 23:29:32.038 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 23:29:32.048 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 23:29:32.068 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:29:32.068 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 75. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1215, R2=1270, Total=2485. Warn if over 250 bubbles per interval.
17-03-17 23:29:32.358 -07 000000618 INF: FPGA: Recv YMVTILE
17-03-17 23:29:32.368 -07 000000433 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 399 ms overall
17-03-17 23:29:32.408 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:29:32.408 -07 000000459 INF: FPGA: Recv YRDPOS 131189
17-03-17 23:29:32.418 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:29:32.418 -07 000000433 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:29:32.418 -07 000000433 INF: Y Motor: Position error before settling (table move) = -11 encoder counts (-0.005 mm)
17-03-17 23:29:32.418 -07 000000433 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.838 mm, average velocity = 2.101 mm/sec
17-03-17 23:29:33.368 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:29:33.368 -07 000000618 INF: FPGA: Recv YRDPOS 131189
17-03-17 23:29:33.378 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:29:33.378 -07 000000433 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:29:33.398 -07 000000433 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:29:33.398 -07 000000433 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:29:33.398 -07 000000433 INF: Y Motor: Moved to 64.0571 after 1435 ms (table move)
17-03-17 23:29:33.398 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.132277 mm (DAC = 28896)
17-03-17 23:29:33.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:33.398 -07 000000561 INF: FPGA: Recv ZSGSRD 29883
17-03-17 23:29:33.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:29:33.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:33.408 -07 000000627 INF: FPGA: Recv ZSGSRD 29882
17-03-17 23:29:33.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:33.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:33.418 -07 000000623 INF: FPGA: Recv ZSGSRD 29883
17-03-17 23:29:33.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:33.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:33.428 -07 000000438 INF: FPGA: Recv ZSGSRD 29883
17-03-17 23:29:33.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:33.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:33.438 -07 000000448 INF: FPGA: Recv ZSGSRD 29882
17-03-17 23:29:33.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:33.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:33.448 -07 000000576 INF: FPGA: Recv ZSGSRD 29888
17-03-17 23:29:33.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:33.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:33.458 -07 000000541 INF: FPGA: Recv ZSGSRD 29879
17-03-17 23:29:33.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:33.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:33.468 -07 000000486 INF: FPGA: Recv ZSGSRD 29868
17-03-17 23:29:33.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:33.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:33.478 -07 000000459 INF: FPGA: Recv ZSGSRD 29881
17-03-17 23:29:33.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:33.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:33.488 -07 000000627 INF: FPGA: Recv ZSGSRD 29877
17-03-17 23:29:33.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:33.498 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:29:33.498 -07 000000623 INF: FPGA: Recv ZPIEZORD 25474
17-03-17 23:29:33.508 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:33.508 -07 000000610 INF: Z Motor: Piezo is near 34.4 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.409 V. Piezo Error = -9.7 V.
17-03-17 23:29:33.508 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.3 um, Read 10 ADC samples: Avg = 29881 (-131.5 uncal um), Error = 0.8 uncal um, Median = 29882 (-131.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 20 (0.1 uncal um), Min = 29868 (-131.4 uncal um), Max = 29888 (-131.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 13 (0.1 uncal um)
17-03-17 23:29:33.508 -07 000000610 INF: Z Motor: ADC noise = 13, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29881, posNoise = 7, negNoise = 13
17-03-17 23:29:33.508 -07 000000610 INF: Z Motor: After move to -0.132277, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:29:33.508 -07 000000610 INF: Z Motor: Settle wait time = 1437 ms, measure time = 107 ms (allowed 150 ms), total time = 1544 ms
17-03-17 23:29:33.508 -07 000000610 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms
17-03-17 23:29:33.558 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1596 ms
17-03-17 23:29:33.558 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:29:33.558 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.132285235019094. ----------
17-03-17 23:29:33.558 -07 000000610 INF: Cycle	76	Tile	6	Exposure Settings		A	476	G	229	T	229	C	476
17-03-17 23:29:33.558 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28719, sync = True, waitForSettling = True)
17-03-17 23:29:33.558 -07 000000610 INF: Z Motor: Moving to -0.131467 mm, started at -0.132285 mm, distance = 0.82 um
17-03-17 23:29:33.558 -07 000000610 INF: FPGA: Xmit ZDACW 28719\n [Z Motor]
17-03-17 23:29:33.558 -07 000000448 INF: FPGA: Recv ZDACW
17-03-17 23:29:33.568 -07 000000610 INF: FPGA: 'ZDACW 28719' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:29:33.568 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:29:33.568 -07 000000627 INF: FPGA: Recv ZDACR 28719
17-03-17 23:29:33.578 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:33.578 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:29:33.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:33.728 -07 000000623 INF: FPGA: Recv ZSGSRD 29754
17-03-17 23:29:33.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:29:33.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:33.738 -07 000000502 INF: FPGA: Recv ZSGSRD 29760
17-03-17 23:29:33.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:33.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:33.748 -07 000000561 INF: FPGA: Recv ZSGSRD 29751
17-03-17 23:29:33.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:33.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:33.758 -07 000000576 INF: FPGA: Recv ZSGSRD 29759
17-03-17 23:29:33.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:33.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:33.768 -07 000000475 INF: FPGA: Recv ZSGSRD 29752
17-03-17 23:29:33.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:33.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:33.778 -07 000000480 INF: FPGA: Recv ZSGSRD 29761
17-03-17 23:29:33.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:33.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:33.788 -07 000000486 INF: FPGA: Recv ZSGSRD 29759
17-03-17 23:29:33.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:33.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:33.798 -07 000000627 INF: FPGA: Recv ZSGSRD 29747
17-03-17 23:29:33.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:33.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:33.808 -07 000000502 INF: FPGA: Recv ZSGSRD 29761
17-03-17 23:29:33.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:33.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:33.818 -07 000000480 INF: FPGA: Recv ZSGSRD 29758
17-03-17 23:29:33.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:33.828 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:29:33.828 -07 000000623 INF: FPGA: Recv ZPIEZORD 25311
17-03-17 23:29:33.838 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:33.838 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.382 V. Piezo Error = -9.8 V.
17-03-17 23:29:33.838 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.5 um, Read 10 ADC samples: Avg = 29756 (-130.7 uncal um), Error = 0.8 uncal um, Median = 29758 (-130.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29747 (-130.6 uncal um), Max = 29761 (-130.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 23:29:33.838 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29756, posNoise = 5, negNoise = 9
17-03-17 23:29:33.838 -07 000000610 INF: Z Motor: After move to -0.131467, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:29:33.838 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 23:29:33.838 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:29:33.838 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:29:33.838 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:29:33.838 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:29:33.838 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:29:33.838 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:29:33.838 -07 000000409 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:29:33.838 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:29:33.838 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:29:33.838 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:29:33.838 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:29:33.838 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:29:33.838 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:29:33.848 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:29:33.848 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:29:33.848 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:29:33.858 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 11 ms.
17-03-17 23:29:33.858 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 23:29:33.858 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms.
17-03-17 23:29:33.858 -07 000000409 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 23:29:33.858 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 476 476 229 229 28896 150\n [Camera]
17-03-17 23:29:34.058 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:29:34.538 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 668
17-03-17 23:29:34.538 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 668
17-03-17 23:29:34.538 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:29:34.538 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 668
17-03-17 23:29:34.538 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 668
17-03-17 23:29:34.538 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:29:34.548 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:29:34.548 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 23:29:34.548 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:29:34.548 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 23:29:34.728 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28896 861
17-03-17 23:29:34.878 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1014
17-03-17 23:29:34.918 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 23:29:34.918 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 371 ms.
17-03-17 23:29:34.918 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:29:34.918 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 23:29:34.918 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 23:29:34.918 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:29:34.918 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:29:34.928 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:29:34.928 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 23:29:34.928 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 23:29:35.108 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1240
17-03-17 23:29:35.108 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1240
17-03-17 23:29:35.108 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:29:35.108 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1240
17-03-17 23:29:35.108 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1240
17-03-17 23:29:35.108 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:29:35.108 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:29:35.108 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1145516880, 0x0, 418435064) start.
17-03-17 23:29:35.118 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:29:35.118 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start.
17-03-17 23:29:35.298 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP 1433
17-03-17 23:29:35.298 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:29:35.298 -07 000000610 INF: FPGA: 'CAMDBLSNAP 476 476 229 229 28896 150' command took 2 ms to send, 1436 ms to get response, and 1440 ms overall
17-03-17 23:29:35.298 -07 000000610 INF: Skipping AutoFocus in Tile 7: adopting Best-Z from the cache: -0.131801
17-03-17 23:29:35.298 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13180 mm
17-03-17 23:29:35.298 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:29:35.308 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True)
17-03-17 23:29:35.308 -07 000000561 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm
17-03-17 23:29:35.308 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:29:35.308 -07 000000409 INF: Z Motor: Entering MoveAbsStepped (DAC = 28792, sync = True, waitForSettling = False)
17-03-17 23:29:35.308 -07 000000409 INF: Z Motor: Moving to -0.131801 mm, started at -0.131482 mm, distance = -0.32 um
17-03-17 23:29:35.308 -07 000000486 INF: FPGA: Recv YRDPOS 131189
17-03-17 23:29:35.318 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:29:35.318 -07 000000561 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:29:35.318 -07 000000561 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:29:35.318 -07 000000561 INF: Y Motor: Moving 1337 steps-11
17-03-17 23:29:35.318 -07 000000409 INF: FPGA: Xmit ZDACW 28792\n [Z Motor]
17-03-17 23:29:35.318 -07 000000438 INF: FPGA: Recv ZDACW
17-03-17 23:29:35.328 -07 000000409 INF: FPGA: 'ZDACW 28792' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 23:29:35.328 -07 000000409 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:29:35.328 -07 000000502 INF: FPGA: Recv ZDACR 28792
17-03-17 23:29:35.338 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:29:35.338 -07 000000409 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:35.338 -07 000000409 INF: Z Motor: MoveAbsStepped took 26 ms (did NOT wait for settling yet))
17-03-17 23:29:35.488 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1145516880, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 23:29:35.488 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 23:29:35.488 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:29:35.488 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:29:35.498 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 23:29:35.498 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 23:29:35.498 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:29:35.498 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:29:35.498 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 23:29:35.498 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 23:29:35.708 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-17 23:29:35.708 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 23:29:35.748 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:29:35.758 -07 000000541 INF: FPGA: Recv YRDPOS 132872
17-03-17 23:29:35.758 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 23:29:35.758 -07 000000561 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:29:35.758 -07 000000561 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 23:29:35.758 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.835 mm, average velocity = 2.099 mm/sec
17-03-17 23:29:36.708 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:29:36.708 -07 000000459 INF: FPGA: Recv YRDPOS 132872
17-03-17 23:29:36.718 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:29:36.718 -07 000000561 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:29:36.738 -07 000000561 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:29:36.738 -07 000000561 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:29:36.738 -07 000000561 INF: Y Motor: Moved to 64.8789 after 1432 ms (table move)
17-03-17 23:29:36.738 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.131801 mm (DAC = 28792)
17-03-17 23:29:36.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:36.748 -07 000000438 INF: FPGA: Recv ZSGSRD 29808
17-03-17 23:29:36.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 23:29:36.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:36.748 -07 000000512 INF: FPGA: Recv ZSGSRD 29812
17-03-17 23:29:36.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:29:36.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:36.758 -07 000000541 INF: FPGA: Recv ZSGSRD 29808
17-03-17 23:29:36.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:36.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:36.768 -07 000000502 INF: FPGA: Recv ZSGSRD 29808
17-03-17 23:29:36.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:36.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:36.778 -07 000000486 INF: FPGA: Recv ZSGSRD 29805
17-03-17 23:29:36.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:36.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:36.788 -07 000000627 INF: FPGA: Recv ZSGSRD 29816
17-03-17 23:29:36.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:36.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:36.798 -07 000000409 INF: FPGA: Recv ZSGSRD 29811
17-03-17 23:29:36.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:36.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:36.808 -07 000000623 INF: FPGA: Recv ZSGSRD 29804
17-03-17 23:29:36.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:36.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:36.818 -07 000000459 INF: FPGA: Recv ZSGSRD 29805
17-03-17 23:29:36.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:36.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:36.828 -07 000000618 INF: FPGA: Recv ZSGSRD 29799
17-03-17 23:29:36.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:36.838 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:29:36.838 -07 000000541 INF: FPGA: Recv ZPIEZORD 25367
17-03-17 23:29:36.848 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:36.848 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.393 V. Piezo Error = -9.7 V.
17-03-17 23:29:36.848 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.8 um, Read 10 ADC samples: Avg = 29808 (-131.0 uncal um), Error = 0.8 uncal um, Median = 29808 (-131.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 29799 (-131.0 uncal um), Max = 29816 (-131.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 23:29:36.848 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29808, posNoise = 8, negNoise = 9
17-03-17 23:29:36.848 -07 000000610 INF: Z Motor: After move to -0.131801, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:29:36.848 -07 000000610 INF: Z Motor: Settle wait time = 1434 ms, measure time = 102 ms (allowed 150 ms), total time = 1536 ms
17-03-17 23:29:36.848 -07 000000610 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 23:29:36.898 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-17 23:29:36.898 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:29:36.898 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.131816267532746. ----------
17-03-17 23:29:36.898 -07 000000610 INF: Cycle	76	Tile	7	Exposure Settings		A	476	G	229	T	229	C	476
17-03-17 23:29:36.898 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28615, sync = True, waitForSettling = True)
17-03-17 23:29:36.898 -07 000000610 INF: Z Motor: Moving to -0.130991 mm, started at -0.131816 mm, distance = 0.83 um
17-03-17 23:29:36.898 -07 000000610 INF: FPGA: Xmit ZDACW 28615\n [Z Motor]
17-03-17 23:29:36.898 -07 000000480 INF: FPGA: Recv ZDACW
17-03-17 23:29:36.908 -07 000000610 INF: FPGA: 'ZDACW 28615' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:29:36.908 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:29:36.908 -07 000000433 INF: FPGA: Recv ZDACR 28615
17-03-17 23:29:36.918 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:36.918 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:29:36.968 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 3.993549,
17-03-17 23:29:37.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:37.068 -07 000000576 INF: FPGA: Recv ZSGSRD 29678
17-03-17 23:29:37.068 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:29:37.068 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 75. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1215, R2=1270, Total=2485. Warn if over 250 bubbles per interval.
17-03-17 23:29:37.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:37.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:37.088 -07 000000475 INF: FPGA: Recv ZSGSRD 29678
17-03-17 23:29:37.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:29:37.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:37.098 -07 000000480 INF: FPGA: Recv ZSGSRD 29685
17-03-17 23:29:37.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:37.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:37.108 -07 000000448 INF: FPGA: Recv ZSGSRD 29681
17-03-17 23:29:37.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:37.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:37.118 -07 000000623 INF: FPGA: Recv ZSGSRD 29679
17-03-17 23:29:37.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:37.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:37.128 -07 000000433 INF: FPGA: Recv ZSGSRD 29686
17-03-17 23:29:37.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:37.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:37.138 -07 000000480 INF: FPGA: Recv ZSGSRD 29677
17-03-17 23:29:37.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:37.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:37.148 -07 000000438 INF: FPGA: Recv ZSGSRD 29676
17-03-17 23:29:37.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:37.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:37.158 -07 000000512 INF: FPGA: Recv ZSGSRD 29686
17-03-17 23:29:37.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:37.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:37.168 -07 000000433 INF: FPGA: Recv ZSGSRD 29682
17-03-17 23:29:37.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:37.178 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:29:37.178 -07 000000480 INF: FPGA: Recv ZPIEZORD 25203
17-03-17 23:29:37.188 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:37.188 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.366 V. Piezo Error = -9.8 V.
17-03-17 23:29:37.188 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.0 um, Read 10 ADC samples: Avg = 29681 (-130.2 uncal um), Error = 0.8 uncal um, Median = 29680 (-130.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29676 (-130.2 uncal um), Max = 29686 (-130.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:29:37.188 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29681, posNoise = 5, negNoise = 5
17-03-17 23:29:37.188 -07 000000610 INF: Z Motor: After move to -0.130991, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:29:37.188 -07 000000610 INF: Z Motor: MoveAbsStepped took 285 ms)
17-03-17 23:29:37.188 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:29:37.188 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:29:37.188 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:29:37.188 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:29:37.188 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:29:37.188 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:29:37.188 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:29:37.188 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:29:37.188 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:29:37.188 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:29:37.188 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:29:37.188 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:29:37.188 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:29:37.188 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:29:37.198 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:29:37.198 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:29:37.208 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 23:29:37.208 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 23:29:37.208 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 23:29:37.208 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:29:37.208 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 476 476 229 229 28792 150\n [Camera]
17-03-17 23:29:37.408 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:29:37.888 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 668
17-03-17 23:29:37.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 668
17-03-17 23:29:37.888 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:29:37.888 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:29:37.888 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 23:29:37.888 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 668
17-03-17 23:29:37.888 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 668
17-03-17 23:29:37.888 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:29:37.888 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:29:37.888 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 23:29:38.078 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28792 861
17-03-17 23:29:38.228 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1011
17-03-17 23:29:38.268 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 23:29:38.268 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 378 ms.
17-03-17 23:29:38.268 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:29:38.268 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 23:29:38.268 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 23:29:38.268 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:29:38.268 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 23:29:38.268 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 23:29:38.278 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 23:29:38.278 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 23:29:38.458 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1240
17-03-17 23:29:38.458 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1240
17-03-17 23:29:38.458 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:29:38.458 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:29:38.458 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 23:29:38.458 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1240
17-03-17 23:29:38.458 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1240
17-03-17 23:29:38.458 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:29:38.458 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:29:38.458 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 23:29:38.648 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 1433
17-03-17 23:29:38.648 -07 000000623 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:29:38.648 -07 000000610 INF: FPGA: 'CAMDBLSNAP 476 476 229 229 28792 150' command took 2 ms to send, 1429 ms to get response, and 1441 ms overall
17-03-17 23:29:38.658 -07 000000610 INF: Skipping AutoFocus in Tile 8: adopting Best-Z from the cache: -0.131731
17-03-17 23:29:38.658 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13173 mm
17-03-17 23:29:38.658 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:29:38.658 -07 000000475 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True)
17-03-17 23:29:38.658 -07 000000475 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm
17-03-17 23:29:38.658 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:29:38.658 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 28777, sync = True, waitForSettling = False)
17-03-17 23:29:38.658 -07 000000561 INF: Z Motor: Moving to -0.131733 mm, started at -0.131000 mm, distance = -0.73 um
17-03-17 23:29:38.658 -07 000000623 INF: FPGA: Recv YRDPOS 132872
17-03-17 23:29:38.668 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:29:38.668 -07 000000475 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:29:38.668 -07 000000475 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:29:38.668 -07 000000475 INF: Y Motor: Moving 1350 steps-28
17-03-17 23:29:38.668 -07 000000561 INF: FPGA: Xmit ZDACW 28777\n [Z Motor]
17-03-17 23:29:38.668 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 23:29:38.678 -07 000000561 INF: FPGA: 'ZDACW 28777' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 23:29:38.678 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:29:38.678 -07 000000438 INF: FPGA: Recv ZDACR 28777
17-03-17 23:29:38.688 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:38.688 -07 000000561 INF: Z Motor: MoveAbsStepped took 25 ms (did NOT wait for settling yet))
17-03-17 23:29:38.688 -07 000000475 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:29:38.848 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 387 ms.
17-03-17 23:29:38.848 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms.
17-03-17 23:29:38.848 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:29:38.848 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 386 ms.
17-03-17 23:29:38.848 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 23:29:38.848 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:29:38.848 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:29:38.848 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 23:29:38.858 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:29:38.858 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 23:29:39.058 -07 000000541 INF: FPGA: Recv YMVTILE
17-03-17 23:29:39.058 -07 000000475 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 23:29:39.108 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:29:39.118 -07 000000623 INF: FPGA: Recv YRDPOS 134582
17-03-17 23:29:39.118 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 23:29:39.118 -07 000000475 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:29:39.118 -07 000000475 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm)
17-03-17 23:29:39.118 -07 000000475 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.844 mm, average velocity = 2.120 mm/sec
17-03-17 23:29:40.068 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:29:40.068 -07 000000459 INF: FPGA: Recv YRDPOS 134583
17-03-17 23:29:40.078 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:29:40.078 -07 000000475 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:29:40.098 -07 000000475 INF: Y Motor: After move to 65.722610, error = -0.008255, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:29:40.098 -07 000000475 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 23:29:40.098 -07 000000475 INF: Y Motor: Moved to 65.7144 after 1444 ms (table move)
17-03-17 23:29:40.108 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.131733 mm (DAC = 28777)
17-03-17 23:29:40.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:40.108 -07 000000561 INF: FPGA: Recv ZSGSRD 29804
17-03-17 23:29:40.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:40.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:40.118 -07 000000448 INF: FPGA: Recv ZSGSRD 29805
17-03-17 23:29:40.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:40.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:40.128 -07 000000459 INF: FPGA: Recv ZSGSRD 29799
17-03-17 23:29:40.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:40.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:40.138 -07 000000623 INF: FPGA: Recv ZSGSRD 29797
17-03-17 23:29:40.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:40.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:40.148 -07 000000627 INF: FPGA: Recv ZSGSRD 29799
17-03-17 23:29:40.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:40.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:40.158 -07 000000618 INF: FPGA: Recv ZSGSRD 29799
17-03-17 23:29:40.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:40.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:40.168 -07 000000459 INF: FPGA: Recv ZSGSRD 29791
17-03-17 23:29:40.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:40.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:40.178 -07 000000475 INF: FPGA: Recv ZSGSRD 29793
17-03-17 23:29:40.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:40.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:40.188 -07 000000627 INF: FPGA: Recv ZSGSRD 29798
17-03-17 23:29:40.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:40.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:40.198 -07 000000409 INF: FPGA: Recv ZSGSRD 29802
17-03-17 23:29:40.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:40.208 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:29:40.208 -07 000000541 INF: FPGA: Recv ZPIEZORD 25367
17-03-17 23:29:40.218 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:40.218 -07 000000610 INF: Z Motor: Piezo is near 34.2 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.391 V. Piezo Error = -9.7 V.
17-03-17 23:29:40.218 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.7 um, Read 10 ADC samples: Avg = 29799 (-131.0 uncal um), Error = 0.8 uncal um, Median = 29799 (-131.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29791 (-130.9 uncal um), Max = 29805 (-131.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 23:29:40.218 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29799, posNoise = 6, negNoise = 8
17-03-17 23:29:40.218 -07 000000610 INF: Z Motor: After move to -0.131733, error = -0.000026, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:29:40.218 -07 000000610 INF: Z Motor: Settle wait time = 1445 ms, measure time = 110 ms (allowed 150 ms), total time = 1555 ms
17-03-17 23:29:40.218 -07 000000610 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 23:29:40.258 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1598 ms
17-03-17 23:29:40.258 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:29:40.258 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71435546875, Z-position -0.13175844962347. ----------
17-03-17 23:29:40.258 -07 000000610 INF: Cycle	76	Tile	8	Exposure Settings		A	476	G	229	T	229	C	476
17-03-17 23:29:40.258 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28600, sync = True, waitForSettling = True)
17-03-17 23:29:40.258 -07 000000610 INF: Z Motor: Moving to -0.130922 mm, started at -0.131758 mm, distance = 0.84 um
17-03-17 23:29:40.258 -07 000000610 INF: FPGA: Xmit ZDACW 28600\n [Z Motor]
17-03-17 23:29:40.258 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 23:29:40.268 -07 000000610 INF: FPGA: 'ZDACW 28600' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:29:40.268 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:29:40.268 -07 000000576 INF: FPGA: Recv ZDACR 28600
17-03-17 23:29:40.278 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:40.278 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:29:40.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:40.428 -07 000000480 INF: FPGA: Recv ZSGSRD 29678
17-03-17 23:29:40.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:29:40.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:40.438 -07 000000541 INF: FPGA: Recv ZSGSRD 29675
17-03-17 23:29:40.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:40.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:40.448 -07 000000561 INF: FPGA: Recv ZSGSRD 29678
17-03-17 23:29:40.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:40.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:40.458 -07 000000627 INF: FPGA: Recv ZSGSRD 29669
17-03-17 23:29:40.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:40.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:40.468 -07 000000618 INF: FPGA: Recv ZSGSRD 29670
17-03-17 23:29:40.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:40.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:40.478 -07 000000512 INF: FPGA: Recv ZSGSRD 29670
17-03-17 23:29:40.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:40.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:40.488 -07 000000561 INF: FPGA: Recv ZSGSRD 29664
17-03-17 23:29:40.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:40.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:40.498 -07 000000576 INF: FPGA: Recv ZSGSRD 29668
17-03-17 23:29:40.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:40.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:40.508 -07 000000541 INF: FPGA: Recv ZSGSRD 29675
17-03-17 23:29:40.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:40.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:40.518 -07 000000486 INF: FPGA: Recv ZSGSRD 29682
17-03-17 23:29:40.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:40.528 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:29:40.528 -07 000000475 INF: FPGA: Recv ZPIEZORD 25204
17-03-17 23:29:40.538 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:40.538 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.364 V. Piezo Error = -9.8 V.
17-03-17 23:29:40.538 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.9 um, Read 10 ADC samples: Avg = 29673 (-130.2 uncal um), Error = 0.8 uncal um, Median = 29672 (-130.2 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 29664 (-130.1 uncal um), Max = 29682 (-130.2 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 23:29:40.538 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29673, posNoise = 9, negNoise = 9
17-03-17 23:29:40.538 -07 000000610 INF: Z Motor: After move to -0.130922, error = -0.000027, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:29:40.538 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 23:29:40.538 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:29:40.538 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:29:40.538 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:29:40.538 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:29:40.538 -07 000000409 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:29:40.538 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:29:40.538 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:29:40.538 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:29:40.538 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:29:40.538 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:29:40.538 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:29:40.538 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:29:40.548 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:29:40.548 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:29:40.548 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:29:40.548 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:29:40.558 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 23:29:40.558 -07 000000409 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms.
17-03-17 23:29:40.558 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms.
17-03-17 23:29:40.558 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:29:40.568 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 476 476 229 229 28777 150\n [Camera]
17-03-17 23:29:40.768 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:29:41.238 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 668
17-03-17 23:29:41.238 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 668
17-03-17 23:29:41.238 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:29:41.238 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:29:41.238 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start.
17-03-17 23:29:41.238 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 668
17-03-17 23:29:41.238 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 668
17-03-17 23:29:41.238 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:29:41.238 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:29:41.248 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start.
17-03-17 23:29:41.428 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28777 861
17-03-17 23:29:41.588 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1014
17-03-17 23:29:41.628 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 23:29:41.628 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms.
17-03-17 23:29:41.628 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:29:41.628 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 23:29:41.628 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms.
17-03-17 23:29:41.628 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:29:41.638 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:29:41.638 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms.
17-03-17 23:29:41.638 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:29:41.648 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 23:29:41.808 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1240
17-03-17 23:29:41.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1240
17-03-17 23:29:41.808 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:29:41.818 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1240
17-03-17 23:29:41.818 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1240
17-03-17 23:29:41.818 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:29:41.818 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:29:41.818 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 23:29:41.818 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:29:41.818 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 23:29:41.998 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 1433
17-03-17 23:29:42.008 -07 000000475 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:29:42.008 -07 000000610 INF: FPGA: 'CAMDBLSNAP 476 476 229 229 28777 150' command took 2 ms to send, 1430 ms to get response, and 1440 ms overall
17-03-17 23:29:42.008 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:29:42.008 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71435546875, Z-Position -0.130948998893608. ------
17-03-17 23:29:42.008 -07 000000448 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13724 mm
17-03-17 23:29:42.008 -07 000000448 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:29:42.008 -07 000000475 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True)
17-03-17 23:29:42.008 -07 000000475 INF: Y Motor: Moving to 66.5526 mm, started at 65.7144 mm, delta = 0.8382 mm
17-03-17 23:29:42.018 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:29:42.018 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 29980, sync = True, waitForSettling = False)
17-03-17 23:29:42.018 -07 000000486 INF: Z Motor: Moving to -0.137240 mm, started at -0.130949 mm, distance = -6.29 um
17-03-17 23:29:42.018 -07 000000433 INF: FPGA: Recv YRDPOS 134583
17-03-17 23:29:42.028 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:29:42.028 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:29:42.028 -07 000000475 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:29:42.028 -07 000000475 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:29:42.028 -07 000000475 INF: Y Motor: Moving 1341 steps-18
17-03-17 23:29:42.028 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:29:42.038 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 24 ms overall
17-03-17 23:29:42.038 -07 000000486 INF: FPGA: Xmit ZDACW 29980\n [Z Motor]
17-03-17 23:29:42.038 -07 000000433 INF: FPGA: Recv ZDACW
17-03-17 23:29:42.048 -07 000000486 INF: FPGA: 'ZDACW 29980' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:29:42.048 -07 000000475 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:29:42.058 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:29:42.068 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:29:42.068 -07 000000561 INF: FPGA: Recv ZDACR 29980
17-03-17 23:29:42.068 -07 000000409 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:29:42.068 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 75. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1215, R2=1270, Total=2485. Warn if over 250 bubbles per interval.
17-03-17 23:29:42.078 -07 000000486 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:29:42.078 -07 000000486 INF: Z Motor: MoveAbsStepped took 59 ms (did NOT wait for settling yet))
17-03-17 23:29:42.188 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 375 ms.
17-03-17 23:29:42.188 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 375 ms.
17-03-17 23:29:42.188 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:29:42.198 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 23:29:42.198 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 23:29:42.198 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:29:42.198 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:29:42.198 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 23:29:42.198 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:29:42.208 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 23:29:42.258 -07 000000409 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:29:42.258 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall
17-03-17 23:29:42.328 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 4.014009,
17-03-17 23:29:42.418 -07 000000459 INF: FPGA: Recv YMVTILE
17-03-17 23:29:42.418 -07 000000475 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall
17-03-17 23:29:42.478 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:29:42.478 -07 000000486 INF: FPGA: Recv YRDPOS 136272
17-03-17 23:29:42.488 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:29:42.488 -07 000000475 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:29:42.488 -07 000000475 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 23:29:42.488 -07 000000475 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.838 mm, average velocity = 2.106 mm/sec
17-03-17 23:29:43.438 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:29:43.438 -07 000000512 INF: FPGA: Recv YRDPOS 136272
17-03-17 23:29:43.448 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:29:43.448 -07 000000475 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:29:43.468 -07 000000475 INF: Y Motor: After move to 66.552605, error = -0.013542, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:29:43.468 -07 000000475 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:29:43.468 -07 000000475 INF: Y Motor: Moved to 66.5391 after 1457 ms (table move)
17-03-17 23:29:43.478 -07 000000448 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137240 mm (DAC = 29980)
17-03-17 23:29:43.478 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:43.478 -07 000000409 INF: FPGA: Recv ZSGSRD 30661
17-03-17 23:29:43.488 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:43.488 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:43.488 -07 000000438 INF: FPGA: Recv ZSGSRD 30656
17-03-17 23:29:43.498 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:43.498 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:43.498 -07 000000561 INF: FPGA: Recv ZSGSRD 30658
17-03-17 23:29:43.508 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:43.508 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:43.508 -07 000000502 INF: FPGA: Recv ZSGSRD 30648
17-03-17 23:29:43.518 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:43.518 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:43.518 -07 000000409 INF: FPGA: Recv ZSGSRD 30648
17-03-17 23:29:43.528 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:43.528 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:43.528 -07 000000627 INF: FPGA: Recv ZSGSRD 30656
17-03-17 23:29:43.538 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:43.538 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:43.538 -07 000000459 INF: FPGA: Recv ZSGSRD 30653
17-03-17 23:29:43.548 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:43.548 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:43.548 -07 000000502 INF: FPGA: Recv ZSGSRD 30649
17-03-17 23:29:43.558 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:43.558 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:43.558 -07 000000409 INF: FPGA: Recv ZSGSRD 30658
17-03-17 23:29:43.568 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:43.568 -07 000000448 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:43.568 -07 000000627 INF: FPGA: Recv ZSGSRD 30655
17-03-17 23:29:43.578 -07 000000448 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:43.578 -07 000000448 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:29:43.578 -07 000000459 INF: FPGA: Recv ZPIEZORD 26513
17-03-17 23:29:43.588 -07 000000448 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:43.588 -07 000000448 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.575 V. Piezo Error = -9.1 V.
17-03-17 23:29:43.588 -07 000000448 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.2 um, Read 10 ADC samples: Avg = 30654 (-136.5 uncal um), Error = 0.8 uncal um, Median = 30656 (-136.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30648 (-136.4 uncal um), Max = 30661 (-136.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um)
17-03-17 23:29:43.588 -07 000000448 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30654, posNoise = 7, negNoise = 6
17-03-17 23:29:43.588 -07 000000448 INF: Z Motor: After move to -0.137240, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:29:43.588 -07 000000448 INF: Z Motor: Settle wait time = 1459 ms, measure time = 110 ms (allowed 150 ms), total time = 1569 ms
17-03-17 23:29:43.588 -07 000000448 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms
17-03-17 23:29:43.628 -07 000000448 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1614 ms
17-03-17 23:29:43.628 -07 000000448 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:29:43.628 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:29:43.628 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:29:43.628 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:29:43.628 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:29:43.628 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:29:43.628 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:29:43.628 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:29:43.628 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:29:43.638 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:29:43.638 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:29:43.638 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms.
17-03-17 23:29:43.638 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms.
17-03-17 23:29:43.648 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:29:43.688 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:29:43.888 -07 000000475 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:29:43.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:29:43.888 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:29:43.888 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-17 23:29:43.928 -07 000000480 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:29:43.928 -07 000000480 INF: FPGA: Recv CAMSNAP
17-03-17 23:29:43.928 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 278 ms to get response, and 286 ms overall
17-03-17 23:29:44.018 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 121 ms.
17-03-17 23:29:44.018 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:29:44.018 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms.
17-03-17 23:29:44.018 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 125 ms.
17-03-17 23:29:44.028 -07 000000618 INF: Autofocus start
17-03-17 23:29:44.028 -07 000000618 INF: MeasureProfile start
17-03-17 23:29:44.028 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:29:44.028 -07 000000541 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:29:44.038 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:29:44.038 -07 000000459 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:29:44.038 -07 000000618 INF: MeasureProfile done
17-03-17 23:29:44.038 -07 000000618 INF: X=48  Z correction [um]=0.2069503
17-03-17 23:29:44.038 -07 000000618 INF: Autofocus finished
17-03-17 23:29:44.238 -07 000000623 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:29:44.238 -07 000000459 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:29:44.238 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5390625, Z-position -0.137251151004675. ----------
17-03-17 23:29:44.248 -07 000000610 INF: Cycle	76	Tile	9	Exposure Settings		A	476	G	229	T	229	C	476
17-03-17 23:29:44.248 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28538, sync = True, waitForSettling = True)
17-03-17 23:29:44.248 -07 000000610 INF: Z Motor: Moving to -0.130639 mm, started at -0.137251 mm, distance = 6.61 um
17-03-17 23:29:44.248 -07 000000610 INF: FPGA: Xmit ZDACW 28538\n [Z Motor]
17-03-17 23:29:44.248 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 23:29:44.258 -07 000000610 INF: FPGA: 'ZDACW 28538' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:29:44.258 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:29:44.258 -07 000000438 INF: FPGA: Recv ZDACR 28538
17-03-17 23:29:44.268 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:44.268 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:29:44.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:44.418 -07 000000459 INF: FPGA: Recv ZSGSRD 29628
17-03-17 23:29:44.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:29:44.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:44.428 -07 000000618 INF: FPGA: Recv ZSGSRD 29630
17-03-17 23:29:44.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:44.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:44.438 -07 000000486 INF: FPGA: Recv ZSGSRD 29622
17-03-17 23:29:44.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:44.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:44.448 -07 000000475 INF: FPGA: Recv ZSGSRD 29628
17-03-17 23:29:44.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:44.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:44.458 -07 000000409 INF: FPGA: Recv ZSGSRD 29628
17-03-17 23:29:44.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:44.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:44.468 -07 000000502 INF: FPGA: Recv ZSGSRD 29626
17-03-17 23:29:44.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:44.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:44.478 -07 000000480 INF: FPGA: Recv ZSGSRD 29630
17-03-17 23:29:44.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:44.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:44.488 -07 000000475 INF: FPGA: Recv ZSGSRD 29625
17-03-17 23:29:44.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:44.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:44.498 -07 000000448 INF: FPGA: Recv ZSGSRD 29626
17-03-17 23:29:44.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:44.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:44.508 -07 000000627 INF: FPGA: Recv ZSGSRD 29626
17-03-17 23:29:44.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:44.518 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:29:44.518 -07 000000623 INF: FPGA: Recv ZPIEZORD 25155
17-03-17 23:29:44.528 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:44.528 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.355 V. Piezo Error = -9.8 V.
17-03-17 23:29:44.528 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.6 um, Read 10 ADC samples: Avg = 29627 (-129.9 uncal um), Error = 0.8 uncal um, Median = 29627 (-129.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29622 (-129.8 uncal um), Max = 29630 (-129.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:29:44.528 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29627, posNoise = 3, negNoise = 5
17-03-17 23:29:44.528 -07 000000610 INF: Z Motor: After move to -0.130639, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:29:44.528 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms)
17-03-17 23:29:44.528 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:29:44.528 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:29:44.528 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:29:44.528 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:29:44.528 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:29:44.528 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:29:44.528 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:29:44.528 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:29:44.528 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:29:44.528 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:29:44.528 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:29:44.528 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:29:44.538 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:29:44.538 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:29:44.538 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:29:44.538 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:29:44.548 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 23:29:44.548 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 23:29:44.548 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 23:29:44.548 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:29:44.548 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 476 476 229 229 28714 150\n [Camera]
17-03-17 23:29:44.748 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 195
17-03-17 23:29:45.218 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 668
17-03-17 23:29:45.218 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 668
17-03-17 23:29:45.228 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:29:45.228 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:29:45.228 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1145516880, 0x0, 391868352) start.
17-03-17 23:29:45.228 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 668
17-03-17 23:29:45.228 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 668
17-03-17 23:29:45.228 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:29:45.228 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:29:45.228 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 23:29:45.418 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28714 861
17-03-17 23:29:45.568 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1011
17-03-17 23:29:45.598 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 23:29:45.598 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 23:29:45.598 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:29:45.598 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1145516880, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 23:29:45.598 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 23:29:45.598 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:29:45.608 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 23:29:45.608 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 23:29:45.608 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 23:29:45.618 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 386 ms.
17-03-17 23:29:45.798 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1240
17-03-17 23:29:45.798 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1240
17-03-17 23:29:45.798 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:29:45.908 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1240
17-03-17 23:29:45.908 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1240
17-03-17 23:29:45.918 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:29:45.918 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:29:45.918 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 23:29:45.918 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:29:45.918 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 23:29:45.988 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP 1433
17-03-17 23:29:45.988 -07 000000433 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:29:45.988 -07 000000610 INF: FPGA: 'CAMDBLSNAP 476 476 229 229 28714 150' command took 2 ms to send, 1433 ms to get response, and 1439 ms overall
17-03-17 23:29:45.988 -07 000000610 INF: Skipping AutoFocus in Tile 10: adopting Best-Z from the cache: -0.131344
17-03-17 23:29:45.988 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13134 mm
17-03-17 23:29:45.988 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:29:45.988 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True)
17-03-17 23:29:45.988 -07 000000438 INF: Y Motor: Moving to 67.3826 mm, started at 66.5391 mm, delta = 0.8435 mm
17-03-17 23:29:45.988 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:29:45.988 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 28692, sync = True, waitForSettling = False)
17-03-17 23:29:45.988 -07 000000480 INF: Z Motor: Moving to -0.131344 mm, started at -0.130653 mm, distance = -0.69 um
17-03-17 23:29:45.998 -07 000000480 INF: FPGA: Xmit ZDACW 28692\n [Z Motor]
17-03-17 23:29:45.998 -07 000000502 INF: FPGA: Recv YRDPOS 136273
17-03-17 23:29:45.998 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall
17-03-17 23:29:45.998 -07 000000438 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:29:45.998 -07 000000618 INF: FPGA: Recv ZDACW
17-03-17 23:29:45.998 -07 000000438 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:29:45.998 -07 000000438 INF: Y Motor: Moving 1349 steps-28
17-03-17 23:29:46.008 -07 000000480 INF: FPGA: 'ZDACW 28692' command took 0 ms to send, 0 ms to get response, and 11 ms overall
17-03-17 23:29:46.008 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:29:46.008 -07 000000576 INF: FPGA: Recv ZDACR 28692
17-03-17 23:29:46.018 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:29:46.018 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:46.018 -07 000000480 INF: Z Motor: MoveAbsStepped took 21 ms (did NOT wait for settling yet))
17-03-17 23:29:46.298 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 23:29:46.298 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 23:29:46.298 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:29:46.308 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 389 ms.
17-03-17 23:29:46.308 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms.
17-03-17 23:29:46.308 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:29:46.308 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:29:46.308 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms.
17-03-17 23:29:46.308 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 515 ms.
17-03-17 23:29:46.318 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms.
17-03-17 23:29:46.388 -07 000000502 INF: FPGA: Recv YMVTILE
17-03-17 23:29:46.388 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 367 ms to get response, and 392 ms overall
17-03-17 23:29:46.428 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:29:46.438 -07 000000486 INF: FPGA: Recv YRDPOS 137978
17-03-17 23:29:46.438 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 23:29:46.438 -07 000000438 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:29:46.438 -07 000000438 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm)
17-03-17 23:29:46.438 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.844 mm, average velocity = 2.152 mm/sec
17-03-17 23:29:47.068 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:29:47.078 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 75. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1215, R2=1270, Total=2485. Warn if over 250 bubbles per interval.
17-03-17 23:29:47.388 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:29:47.388 -07 000000576 INF: FPGA: Recv YRDPOS 137978
17-03-17 23:29:47.398 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:29:47.398 -07 000000438 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:29:47.418 -07 000000438 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:29:47.418 -07 000000438 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:29:47.418 -07 000000438 INF: Y Motor: Moved to 67.3721 after 1428 ms (table move)
17-03-17 23:29:47.418 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.131344 mm (DAC = 28692)
17-03-17 23:29:47.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:47.428 -07 000000502 INF: FPGA: Recv ZSGSRD 29736
17-03-17 23:29:47.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 23:29:47.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:47.428 -07 000000627 INF: FPGA: Recv ZSGSRD 29746
17-03-17 23:29:47.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:29:47.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:47.438 -07 000000576 INF: FPGA: Recv ZSGSRD 29732
17-03-17 23:29:47.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:47.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:47.448 -07 000000438 INF: FPGA: Recv ZSGSRD 29724
17-03-17 23:29:47.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:47.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:47.458 -07 000000618 INF: FPGA: Recv ZSGSRD 29733
17-03-17 23:29:47.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:47.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:47.468 -07 000000541 INF: FPGA: Recv ZSGSRD 29744
17-03-17 23:29:47.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:47.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:47.478 -07 000000433 INF: FPGA: Recv ZSGSRD 29739
17-03-17 23:29:47.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:47.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:47.488 -07 000000512 INF: FPGA: Recv ZSGSRD 29732
17-03-17 23:29:47.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:47.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:47.498 -07 000000502 INF: FPGA: Recv ZSGSRD 29737
17-03-17 23:29:47.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:47.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:47.508 -07 000000576 INF: FPGA: Recv ZSGSRD 29729
17-03-17 23:29:47.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:47.518 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:29:47.518 -07 000000459 INF: FPGA: Recv ZPIEZORD 25269
17-03-17 23:29:47.528 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:47.528 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.378 V. Piezo Error = -9.8 V.
17-03-17 23:29:47.528 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.3 um, Read 10 ADC samples: Avg = 29735 (-130.6 uncal um), Error = 0.8 uncal um, Median = 29734 (-130.6 uncal um), StdDev = 7 (0.0 uncal um), Range = 22 (0.1 uncal um), Min = 29724 (-130.5 uncal um), Max = 29746 (-130.6 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 11 (0.1 uncal um)
17-03-17 23:29:47.528 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29735, posNoise = 11, negNoise = 11
17-03-17 23:29:47.528 -07 000000610 INF: Z Motor: After move to -0.131344, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:29:47.528 -07 000000610 INF: Z Motor: Settle wait time = 1430 ms, measure time = 102 ms (allowed 150 ms), total time = 1532 ms
17-03-17 23:29:47.528 -07 000000610 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 23:29:47.578 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1584 ms
17-03-17 23:29:47.578 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:29:47.578 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.131347300046397. ----------
17-03-17 23:29:47.578 -07 000000610 INF: Cycle	76	Tile	10	Exposure Settings		A	476	G	229	T	229	C	476
17-03-17 23:29:47.578 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28515, sync = True, waitForSettling = True)
17-03-17 23:29:47.578 -07 000000610 INF: Z Motor: Moving to -0.130533 mm, started at -0.131347 mm, distance = 0.81 um
17-03-17 23:29:47.578 -07 000000610 INF: FPGA: Xmit ZDACW 28515\n [Z Motor]
17-03-17 23:29:47.588 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 23:29:47.588 -07 000000610 INF: FPGA: 'ZDACW 28515' command took 0 ms to send, 1 ms to get response, and 5 ms overall
17-03-17 23:29:47.588 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:29:47.588 -07 000000409 INF: FPGA: Recv ZDACR 28515
17-03-17 23:29:47.598 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:29:47.598 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:29:47.688 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 4.041198,
17-03-17 23:29:47.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:47.748 -07 000000433 INF: FPGA: Recv ZSGSRD 29607
17-03-17 23:29:47.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:29:47.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:47.758 -07 000000438 INF: FPGA: Recv ZSGSRD 29608
17-03-17 23:29:47.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:47.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:47.768 -07 000000512 INF: FPGA: Recv ZSGSRD 29610
17-03-17 23:29:47.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:47.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:47.778 -07 000000627 INF: FPGA: Recv ZSGSRD 29615
17-03-17 23:29:47.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:47.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:47.788 -07 000000480 INF: FPGA: Recv ZSGSRD 29608
17-03-17 23:29:47.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:47.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:47.808 -07 000000459 INF: FPGA: Recv ZSGSRD 29609
17-03-17 23:29:47.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:29:47.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:47.818 -07 000000486 INF: FPGA: Recv ZSGSRD 29612
17-03-17 23:29:47.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:47.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:47.828 -07 000000576 INF: FPGA: Recv ZSGSRD 29614
17-03-17 23:29:47.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:47.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:47.838 -07 000000512 INF: FPGA: Recv ZSGSRD 29613
17-03-17 23:29:47.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:47.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:47.848 -07 000000475 INF: FPGA: Recv ZSGSRD 29605
17-03-17 23:29:47.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:47.858 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:29:47.858 -07 000000480 INF: FPGA: Recv ZPIEZORD 25130
17-03-17 23:29:47.868 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:47.868 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.351 V. Piezo Error = -9.8 V.
17-03-17 23:29:47.868 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.5 um, Read 10 ADC samples: Avg = 29610 (-129.8 uncal um), Error = 0.8 uncal um, Median = 29610 (-129.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29605 (-129.7 uncal um), Max = 29615 (-129.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:29:47.868 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29610, posNoise = 5, negNoise = 5
17-03-17 23:29:47.868 -07 000000610 INF: Z Motor: After move to -0.130533, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:29:47.868 -07 000000610 INF: Z Motor: MoveAbsStepped took 285 ms)
17-03-17 23:29:47.868 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:29:47.868 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:29:47.868 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:29:47.868 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:29:47.868 -07 000000409 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:29:47.868 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:29:47.868 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:29:47.868 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:29:47.868 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms.
17-03-17 23:29:47.868 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:29:47.868 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms.
17-03-17 23:29:47.868 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:29:47.878 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:29:47.878 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:29:47.878 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:29:47.878 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:29:47.888 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 23:29:47.888 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 23:29:47.888 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 23:29:47.888 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:29:47.888 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 476 476 229 229 28692 150\n [Camera]
17-03-17 23:29:48.088 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:29:48.568 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 668
17-03-17 23:29:48.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 668
17-03-17 23:29:48.568 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:29:48.568 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:29:48.568 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1145516880, 0x0, 391868352) start.
17-03-17 23:29:48.568 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 668
17-03-17 23:29:48.568 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 668
17-03-17 23:29:48.568 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:29:48.568 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:29:48.568 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 23:29:48.758 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28692 861
17-03-17 23:29:48.908 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1011
17-03-17 23:29:48.948 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 376 ms.
17-03-17 23:29:48.948 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 23:29:48.948 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:29:48.948 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1145516880, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 23:29:48.948 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 23:29:48.948 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:29:48.958 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:29:48.958 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:29:48.958 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 23:29:48.958 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 23:29:49.138 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1240
17-03-17 23:29:49.138 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1240
17-03-17 23:29:49.138 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:29:49.138 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:29:49.138 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 23:29:49.138 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1240
17-03-17 23:29:49.148 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1240
17-03-17 23:29:49.148 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:29:49.288 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:29:49.288 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start.
17-03-17 23:29:49.328 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP 1433
17-03-17 23:29:49.328 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:29:49.328 -07 000000610 INF: FPGA: 'CAMDBLSNAP 476 476 229 229 28692 150' command took 2 ms to send, 1429 ms to get response, and 1439 ms overall
17-03-17 23:29:49.338 -07 000000610 INF: Skipping AutoFocus in Tile 11: adopting Best-Z from the cache: -0.131018
17-03-17 23:29:49.338 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13102 mm
17-03-17 23:29:49.338 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:29:49.338 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True)
17-03-17 23:29:49.338 -07 000000480 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm
17-03-17 23:29:49.338 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 28621, sync = True, waitForSettling = False)
17-03-17 23:29:49.338 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:29:49.338 -07 000000561 INF: Z Motor: Moving to -0.131019 mm, started at -0.130544 mm, distance = -0.47 um
17-03-17 23:29:49.338 -07 000000576 INF: FPGA: Recv YRDPOS 137978
17-03-17 23:29:49.348 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:29:49.348 -07 000000480 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:29:49.348 -07 000000480 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:29:49.348 -07 000000480 INF: Y Motor: Moving 1345 steps-22
17-03-17 23:29:49.348 -07 000000561 INF: FPGA: Xmit ZDACW 28621\n [Z Motor]
17-03-17 23:29:49.348 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 23:29:49.358 -07 000000561 INF: FPGA: 'ZDACW 28621' command took 0 ms to send, 0 ms to get response, and 15 ms overall
17-03-17 23:29:49.358 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:29:49.358 -07 000000618 INF: FPGA: Recv ZDACR 28621
17-03-17 23:29:49.368 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:29:49.368 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:49.368 -07 000000561 INF: Z Motor: MoveAbsStepped took 26 ms (did NOT wait for settling yet))
17-03-17 23:29:49.528 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 382 ms.
17-03-17 23:29:49.528 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 23:29:49.528 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:29:49.528 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:29:49.528 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 23:29:49.668 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 23:29:49.668 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 23:29:49.668 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:29:49.668 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:29:49.678 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 528 ms.
17-03-17 23:29:49.738 -07 000000486 INF: FPGA: Recv YMVTILE
17-03-17 23:29:49.738 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 23:29:49.778 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:29:49.788 -07 000000448 INF: FPGA: Recv YRDPOS 139684
17-03-17 23:29:49.788 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 3 ms to get response, and 3 ms overall
17-03-17 23:29:49.788 -07 000000480 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:29:49.788 -07 000000480 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm)
17-03-17 23:29:49.788 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.841 mm, average velocity = 2.112 mm/sec
17-03-17 23:29:50.738 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:29:50.738 -07 000000623 INF: FPGA: Recv YRDPOS 139685
17-03-17 23:29:50.748 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:29:50.748 -07 000000480 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:29:50.768 -07 000000480 INF: Y Motor: After move to 68.212608, error = -0.007042, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:29:50.768 -07 000000480 INF: Y Motor: Position error after settling (table move) = -14 encoder counts (-0.007 mm), Delta during settling = 1 counts (0.000 mm)
17-03-17 23:29:50.768 -07 000000480 INF: Y Motor: Moved to 68.2056 after 1429 ms (table move)
17-03-17 23:29:50.768 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.131019 mm (DAC = 28621)
17-03-17 23:29:50.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:50.778 -07 000000459 INF: FPGA: Recv ZSGSRD 29693
17-03-17 23:29:50.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:29:50.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:50.778 -07 000000502 INF: FPGA: Recv ZSGSRD 29683
17-03-17 23:29:50.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:50.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:50.788 -07 000000623 INF: FPGA: Recv ZSGSRD 29685
17-03-17 23:29:50.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:50.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:50.798 -07 000000480 INF: FPGA: Recv ZSGSRD 29684
17-03-17 23:29:50.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:50.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:50.808 -07 000000486 INF: FPGA: Recv ZSGSRD 29686
17-03-17 23:29:50.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:50.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:50.818 -07 000000409 INF: FPGA: Recv ZSGSRD 29693
17-03-17 23:29:50.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:50.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:50.828 -07 000000618 INF: FPGA: Recv ZSGSRD 29685
17-03-17 23:29:50.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:50.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:50.838 -07 000000438 INF: FPGA: Recv ZSGSRD 29683
17-03-17 23:29:50.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:50.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:50.848 -07 000000627 INF: FPGA: Recv ZSGSRD 29691
17-03-17 23:29:50.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:50.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:50.858 -07 000000541 INF: FPGA: Recv ZSGSRD 29683
17-03-17 23:29:50.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:50.868 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:29:50.868 -07 000000576 INF: FPGA: Recv ZPIEZORD 25214
17-03-17 23:29:50.878 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:50.878 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.367 V. Piezo Error = -9.8 V.
17-03-17 23:29:50.878 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.0 um, Read 10 ADC samples: Avg = 29687 (-130.3 uncal um), Error = 0.8 uncal um, Median = 29685 (-130.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29683 (-130.2 uncal um), Max = 29693 (-130.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:29:50.878 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29687, posNoise = 6, negNoise = 4
17-03-17 23:29:50.878 -07 000000610 INF: Z Motor: After move to -0.131019, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:29:50.878 -07 000000610 INF: Z Motor: Settle wait time = 1432 ms, measure time = 104 ms (allowed 150 ms), total time = 1536 ms
17-03-17 23:29:50.878 -07 000000610 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms
17-03-17 23:29:50.928 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1588 ms
17-03-17 23:29:50.928 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:29:50.928 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.20556640625, Z-position -0.131038937863593. ----------
17-03-17 23:29:50.928 -07 000000610 INF: Cycle	76	Tile	11	Exposure Settings		A	476	G	229	T	229	C	476
17-03-17 23:29:50.928 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28444, sync = True, waitForSettling = True)
17-03-17 23:29:50.928 -07 000000610 INF: Z Motor: Moving to -0.130208 mm, started at -0.131039 mm, distance = 0.83 um
17-03-17 23:29:50.928 -07 000000610 INF: FPGA: Xmit ZDACW 28444\n [Z Motor]
17-03-17 23:29:50.928 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 23:29:50.938 -07 000000610 INF: FPGA: 'ZDACW 28444' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:29:50.938 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:29:50.938 -07 000000627 INF: FPGA: Recv ZDACR 28444
17-03-17 23:29:50.948 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:29:50.948 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:29:51.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:51.098 -07 000000433 INF: FPGA: Recv ZSGSRD 29558
17-03-17 23:29:51.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:29:51.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:51.108 -07 000000576 INF: FPGA: Recv ZSGSRD 29558
17-03-17 23:29:51.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:51.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:51.118 -07 000000561 INF: FPGA: Recv ZSGSRD 29566
17-03-17 23:29:51.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:51.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:51.128 -07 000000627 INF: FPGA: Recv ZSGSRD 29559
17-03-17 23:29:51.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:51.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:51.138 -07 000000409 INF: FPGA: Recv ZSGSRD 29558
17-03-17 23:29:51.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:51.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:51.148 -07 000000475 INF: FPGA: Recv ZSGSRD 29561
17-03-17 23:29:51.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:51.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:51.158 -07 000000561 INF: FPGA: Recv ZSGSRD 29557
17-03-17 23:29:51.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:51.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:51.168 -07 000000459 INF: FPGA: Recv ZSGSRD 29559
17-03-17 23:29:51.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:51.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:51.178 -07 000000433 INF: FPGA: Recv ZSGSRD 29563
17-03-17 23:29:51.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:51.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:51.188 -07 000000541 INF: FPGA: Recv ZSGSRD 29560
17-03-17 23:29:51.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:51.198 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:29:51.198 -07 000000448 INF: FPGA: Recv ZPIEZORD 25060
17-03-17 23:29:51.208 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:51.208 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.340 V. Piezo Error = -9.9 V.
17-03-17 23:29:51.208 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.2 um, Read 10 ADC samples: Avg = 29560 (-129.4 uncal um), Error = 0.8 uncal um, Median = 29559 (-129.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29557 (-129.4 uncal um), Max = 29566 (-129.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um)
17-03-17 23:29:51.208 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29560, posNoise = 6, negNoise = 3
17-03-17 23:29:51.208 -07 000000610 INF: Z Motor: After move to -0.130208, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:29:51.208 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 23:29:51.208 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:29:51.208 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:29:51.208 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:29:51.208 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:29:51.208 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:29:51.208 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:29:51.208 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:29:51.208 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:29:51.208 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:29:51.208 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:29:51.208 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:29:51.208 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:29:51.208 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:29:51.208 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:29:51.218 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:29:51.218 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:29:51.228 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 23:29:51.228 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 23:29:51.228 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 23:29:51.228 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 23:29:51.228 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 476 476 229 229 28621 150\n [Camera]
17-03-17 23:29:51.428 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:29:51.908 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 668
17-03-17 23:29:51.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 668
17-03-17 23:29:51.908 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:29:51.908 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 668
17-03-17 23:29:51.908 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 668
17-03-17 23:29:51.908 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:29:51.908 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:29:51.908 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 23:29:51.918 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:29:51.918 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 23:29:52.068 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:29:52.078 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 75. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1215, R2=1270, Total=2485. Warn if over 250 bubbles per interval.
17-03-17 23:29:52.098 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28621 861
17-03-17 23:29:52.248 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1013
17-03-17 23:29:52.308 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 395 ms.
17-03-17 23:29:52.308 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 23:29:52.308 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:29:52.308 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:29:52.308 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms.
17-03-17 23:29:52.318 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 398 ms.
17-03-17 23:29:52.318 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 23:29:52.318 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:29:52.318 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:29:52.328 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms.
17-03-17 23:29:52.478 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1240
17-03-17 23:29:52.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1240
17-03-17 23:29:52.478 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:29:52.478 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:29:52.478 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 1145516880, 0x0, 391868352) start.
17-03-17 23:29:52.478 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1240
17-03-17 23:29:52.478 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1240
17-03-17 23:29:52.488 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:29:52.488 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:29:52.488 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 23:29:52.668 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 1433
17-03-17 23:29:52.668 -07 000000448 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:29:52.668 -07 000000610 INF: FPGA: 'CAMDBLSNAP 476 476 229 229 28621 150' command took 2 ms to send, 1427 ms to get response, and 1439 ms overall
17-03-17 23:29:52.668 -07 000000610 INF: Skipping AutoFocus in Tile 12: adopting Best-Z from the cache: -0.130863
17-03-17 23:29:52.668 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13086 mm
17-03-17 23:29:52.668 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:29:52.678 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True)
17-03-17 23:29:52.678 -07 000000480 INF: Y Motor: Moving to 69.0426 mm, started at 68.2056 mm, delta = 0.8370 mm
17-03-17 23:29:52.678 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:29:52.678 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 28587, sync = True, waitForSettling = False)
17-03-17 23:29:52.678 -07 000000618 INF: Z Motor: Moving to -0.130863 mm, started at -0.130223 mm, distance = -0.64 um
17-03-17 23:29:52.678 -07 000000459 INF: FPGA: Recv YRDPOS 139685
17-03-17 23:29:52.688 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:29:52.688 -07 000000480 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:29:52.688 -07 000000480 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:29:52.688 -07 000000480 INF: Y Motor: Moving 1339 steps-15
17-03-17 23:29:52.688 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:29:52.698 -07 000000618 INF: FPGA: Xmit ZDACW 28587\n [Z Motor]
17-03-17 23:29:52.698 -07 000000541 INF: FPGA: Recv ZDACW
17-03-17 23:29:52.708 -07 000000618 INF: FPGA: 'ZDACW 28587' command took 0 ms to send, 0 ms to get response, and 26 ms overall
17-03-17 23:29:52.708 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:29:52.708 -07 000000627 INF: FPGA: Recv ZDACR 28587
17-03-17 23:29:52.718 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:52.718 -07 000000618 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet))
17-03-17 23:29:52.858 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 1145516880, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 23:29:52.858 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 23:29:52.858 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:29:52.858 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 377 ms.
17-03-17 23:29:52.858 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 377 ms.
17-03-17 23:29:52.858 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:29:52.868 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:29:52.868 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 23:29:52.868 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:29:52.868 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 23:29:53.048 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 4.0344,
17-03-17 23:29:53.058 -07 000000475 INF: FPGA: Recv YMVTILE
17-03-17 23:29:53.058 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall
17-03-17 23:29:53.108 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:29:53.108 -07 000000459 INF: FPGA: Recv YRDPOS 141368
17-03-17 23:29:53.118 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:29:53.118 -07 000000480 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:29:53.118 -07 000000480 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm)
17-03-17 23:29:53.118 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.837 mm, average velocity = 2.214 mm/sec
17-03-17 23:29:54.068 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:29:54.068 -07 000000618 INF: FPGA: Recv YRDPOS 141368
17-03-17 23:29:54.078 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:29:54.078 -07 000000480 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:29:54.098 -07 000000480 INF: Y Motor: After move to 69.042610, error = -0.015266, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:29:54.098 -07 000000480 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:29:54.098 -07 000000480 INF: Y Motor: Moved to 69.0273 after 1424 ms (table move)
17-03-17 23:29:54.098 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.130863 mm (DAC = 28587)
17-03-17 23:29:54.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:54.108 -07 000000475 INF: FPGA: Recv ZSGSRD 29658
17-03-17 23:29:54.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 23:29:54.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:54.108 -07 000000618 INF: FPGA: Recv ZSGSRD 29661
17-03-17 23:29:54.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:29:54.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:54.118 -07 000000502 INF: FPGA: Recv ZSGSRD 29657
17-03-17 23:29:54.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:54.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:54.128 -07 000000486 INF: FPGA: Recv ZSGSRD 29668
17-03-17 23:29:54.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:54.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:54.138 -07 000000576 INF: FPGA: Recv ZSGSRD 29659
17-03-17 23:29:54.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:54.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:54.148 -07 000000623 INF: FPGA: Recv ZSGSRD 29661
17-03-17 23:29:54.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:54.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:54.158 -07 000000480 INF: FPGA: Recv ZSGSRD 29662
17-03-17 23:29:54.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:54.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:54.168 -07 000000448 INF: FPGA: Recv ZSGSRD 29661
17-03-17 23:29:54.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:54.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:54.178 -07 000000475 INF: FPGA: Recv ZSGSRD 29656
17-03-17 23:29:54.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:54.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:54.188 -07 000000618 INF: FPGA: Recv ZSGSRD 29652
17-03-17 23:29:54.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:54.198 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:29:54.198 -07 000000502 INF: FPGA: Recv ZPIEZORD 25238
17-03-17 23:29:54.208 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:54.208 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.362 V. Piezo Error = -9.7 V.
17-03-17 23:29:54.208 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.9 um, Read 10 ADC samples: Avg = 29660 (-130.1 uncal um), Error = 0.8 uncal um, Median = 29660 (-130.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29652 (-130.0 uncal um), Max = 29668 (-130.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 23:29:54.208 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29660, posNoise = 8, negNoise = 8
17-03-17 23:29:54.208 -07 000000610 INF: Z Motor: After move to -0.130863, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:29:54.208 -07 000000610 INF: Z Motor: Settle wait time = 1425 ms, measure time = 102 ms (allowed 150 ms), total time = 1527 ms
17-03-17 23:29:54.208 -07 000000610 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 23:29:54.258 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1580 ms
17-03-17 23:29:54.258 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:29:54.258 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02734375, Z-position -0.130865484135765. ----------
17-03-17 23:29:54.258 -07 000000610 INF: Cycle	76	Tile	12	Exposure Settings		A	476	G	229	T	229	C	476
17-03-17 23:29:54.258 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28410, sync = True, waitForSettling = True)
17-03-17 23:29:54.258 -07 000000610 INF: Z Motor: Moving to -0.130053 mm, started at -0.130865 mm, distance = 0.81 um
17-03-17 23:29:54.258 -07 000000610 INF: FPGA: Xmit ZDACW 28410\n [Z Motor]
17-03-17 23:29:54.258 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 23:29:54.268 -07 000000610 INF: FPGA: 'ZDACW 28410' command took 0 ms to send, 0 ms to get response, and 2 ms overall
17-03-17 23:29:54.268 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:29:54.268 -07 000000438 INF: FPGA: Recv ZDACR 28410
17-03-17 23:29:54.278 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:54.278 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:29:54.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:54.428 -07 000000561 INF: FPGA: Recv ZSGSRD 29537
17-03-17 23:29:54.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:29:54.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:54.438 -07 000000541 INF: FPGA: Recv ZSGSRD 29531
17-03-17 23:29:54.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:54.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:54.448 -07 000000480 INF: FPGA: Recv ZSGSRD 29535
17-03-17 23:29:54.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:54.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:54.458 -07 000000448 INF: FPGA: Recv ZSGSRD 29545
17-03-17 23:29:54.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:54.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:54.468 -07 000000623 INF: FPGA: Recv ZSGSRD 29534
17-03-17 23:29:54.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:54.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:54.478 -07 000000618 INF: FPGA: Recv ZSGSRD 29537
17-03-17 23:29:54.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:54.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:54.488 -07 000000627 INF: FPGA: Recv ZSGSRD 29528
17-03-17 23:29:54.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:54.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:54.498 -07 000000438 INF: FPGA: Recv ZSGSRD 29538
17-03-17 23:29:54.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:54.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:54.508 -07 000000561 INF: FPGA: Recv ZSGSRD 29541
17-03-17 23:29:54.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:54.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:54.518 -07 000000541 INF: FPGA: Recv ZSGSRD 29528
17-03-17 23:29:54.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:54.528 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:29:54.528 -07 000000486 INF: FPGA: Recv ZPIEZORD 25042
17-03-17 23:29:54.538 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:54.538 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.335 V. Piezo Error = -9.9 V.
17-03-17 23:29:54.538 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.1 um, Read 10 ADC samples: Avg = 29535 (-129.3 uncal um), Error = 0.8 uncal um, Median = 29536 (-129.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 29528 (-129.2 uncal um), Max = 29545 (-129.3 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 23:29:54.538 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29535, posNoise = 10, negNoise = 7
17-03-17 23:29:54.538 -07 000000610 INF: Z Motor: After move to -0.130053, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:29:54.538 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 23:29:54.538 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:29:54.538 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:29:54.538 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:29:54.538 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:29:54.538 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:29:54.538 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:29:54.538 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:29:54.538 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:29:54.538 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:29:54.538 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:29:54.538 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:29:54.538 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:29:54.548 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:29:54.548 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:29:54.548 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:29:54.548 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:29:54.558 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-17 23:29:54.558 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms.
17-03-17 23:29:54.558 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 23:29:54.558 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 23:29:54.558 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 476 476 229 229 28587 150\n [Camera]
17-03-17 23:29:54.758 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:29:55.238 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 668
17-03-17 23:29:55.238 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 668
17-03-17 23:29:55.238 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:29:55.238 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:29:55.238 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 23:29:55.238 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 668
17-03-17 23:29:55.238 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 668
17-03-17 23:29:55.248 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:29:55.248 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:29:55.248 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 23:29:55.428 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28587 861
17-03-17 23:29:55.578 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1011
17-03-17 23:29:55.628 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 384 ms.
17-03-17 23:29:55.628 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 23:29:55.628 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:29:55.628 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 382 ms.
17-03-17 23:29:55.628 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms.
17-03-17 23:29:55.628 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:29:55.628 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:29:55.628 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms.
17-03-17 23:29:55.628 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:29:55.638 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 23:29:55.808 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1240
17-03-17 23:29:55.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1240
17-03-17 23:29:55.808 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:29:55.808 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:29:55.808 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 23:29:55.818 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1240
17-03-17 23:29:55.818 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1240
17-03-17 23:29:55.818 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:29:55.818 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:29:55.818 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 23:29:55.998 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP 1433
17-03-17 23:29:55.998 -07 000000409 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:29:55.998 -07 000000610 INF: FPGA: 'CAMDBLSNAP 476 476 229 229 28587 150' command took 2 ms to send, 1429 ms to get response, and 1439 ms overall
17-03-17 23:29:56.008 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:29:56.008 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02734375, Z-Position -0.130062457618045. ------
17-03-17 23:29:56.008 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:29:56.008 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13646 mm
17-03-17 23:29:56.008 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:29:56.008 -07 000000547 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:29:56.008 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True)
17-03-17 23:29:56.008 -07 000000561 INF: Y Motor: Moving to 69.8726 mm, started at 69.0273 mm, delta = 0.8453 mm
17-03-17 23:29:56.008 -07 000000448 INF: Z Motor: Entering MoveAbsStepped (DAC = 29810, sync = True, waitForSettling = False)
17-03-17 23:29:56.008 -07 000000448 INF: Z Motor: Moving to -0.136461 mm, started at -0.130062 mm, distance = -6.40 um
17-03-17 23:29:56.018 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:29:56.018 -07 000000448 INF: FPGA: Xmit ZDACW 29810\n [Z Motor]
17-03-17 23:29:56.018 -07 000000627 INF: FPGA: Recv ZDACW
17-03-17 23:29:56.028 -07 000000448 INF: FPGA: 'ZDACW 29810' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:29:56.028 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:29:56.038 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:29:56.038 -07 000000547 INF: FPGA: Recv YRDPOS 141368
17-03-17 23:29:56.048 -07 000000448 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:29:56.048 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 30 ms overall
17-03-17 23:29:56.048 -07 000000561 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:29:56.048 -07 000000561 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:29:56.048 -07 000000561 INF: Y Motor: Moving 1352 steps-31
17-03-17 23:29:56.048 -07 000000482 INF: FPGA: Recv ZDACR 29810
17-03-17 23:29:56.058 -07 000000448 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:29:56.058 -07 000000448 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet))
17-03-17 23:29:56.058 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:29:56.198 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 23:29:56.198 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 23:29:56.198 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:29:56.198 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 23:29:56.198 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms.
17-03-17 23:29:56.198 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:29:56.198 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:29:56.198 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 388 ms.
17-03-17 23:29:56.198 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:29:56.208 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 23:29:56.228 -07 000000482 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:29:56.228 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall
17-03-17 23:29:56.428 -07 000000480 INF: FPGA: Recv YMVTILE
17-03-17 23:29:56.428 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall
17-03-17 23:29:56.478 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:29:56.478 -07 000000623 INF: FPGA: Recv YRDPOS 143080
17-03-17 23:29:56.488 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:29:56.488 -07 000000561 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:29:56.488 -07 000000561 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm)
17-03-17 23:29:56.488 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.845 mm, average velocity = 2.179 mm/sec
17-03-17 23:29:57.068 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:29:57.078 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 75. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1215, R2=1270, Total=2485. Warn if over 250 bubbles per interval.
17-03-17 23:29:57.438 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:29:57.438 -07 000000541 INF: FPGA: Recv YRDPOS 143080
17-03-17 23:29:57.448 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:57.448 -07 000000561 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:29:57.468 -07 000000561 INF: Y Motor: After move to 69.872612, error = -0.009331, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:29:57.468 -07 000000561 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:29:57.468 -07 000000561 INF: Y Motor: Moved to 69.8633 after 1457 ms (table move)
17-03-17 23:29:57.478 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136461 mm (DAC = 29810)
17-03-17 23:29:57.478 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:57.478 -07 000000576 INF: FPGA: Recv ZSGSRD 30533
17-03-17 23:29:57.488 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:57.488 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:57.488 -07 000000541 INF: FPGA: Recv ZSGSRD 30529
17-03-17 23:29:57.498 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:57.498 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:57.498 -07 000000480 INF: FPGA: Recv ZSGSRD 30536
17-03-17 23:29:57.508 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:57.508 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:57.508 -07 000000475 INF: FPGA: Recv ZSGSRD 30527
17-03-17 23:29:57.518 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:57.518 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:57.518 -07 000000541 INF: FPGA: Recv ZSGSRD 30532
17-03-17 23:29:57.528 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:57.528 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:57.528 -07 000000448 INF: FPGA: Recv ZSGSRD 30531
17-03-17 23:29:57.538 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:57.538 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:57.538 -07 000000480 INF: FPGA: Recv ZSGSRD 30533
17-03-17 23:29:57.548 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:57.548 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:57.548 -07 000000475 INF: FPGA: Recv ZSGSRD 30532
17-03-17 23:29:57.558 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:57.558 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:57.558 -07 000000627 INF: FPGA: Recv ZSGSRD 30527
17-03-17 23:29:57.568 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:57.568 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:57.568 -07 000000547 INF: FPGA: Recv ZSGSRD 30540
17-03-17 23:29:57.578 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:57.578 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:29:57.578 -07 000000576 INF: FPGA: Recv ZPIEZORD 26431
17-03-17 23:29:57.588 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:57.588 -07 000000618 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.549 V. Piezo Error = -9.0 V.
17-03-17 23:29:57.588 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.5 um, Read 10 ADC samples: Avg = 30532 (-135.7 uncal um), Error = 0.8 uncal um, Median = 30532 (-135.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30527 (-135.6 uncal um), Max = 30540 (-135.7 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:29:57.588 -07 000000618 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30532, posNoise = 8, negNoise = 5
17-03-17 23:29:57.588 -07 000000618 INF: Z Motor: After move to -0.136461, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:29:57.588 -07 000000618 INF: Z Motor: Settle wait time = 1460 ms, measure time = 111 ms (allowed 150 ms), total time = 1571 ms
17-03-17 23:29:57.588 -07 000000618 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 23:29:57.628 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1615 ms
17-03-17 23:29:57.628 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:29:57.628 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:29:57.628 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:29:57.628 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:29:57.628 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:29:57.628 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:29:57.628 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:29:57.628 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:29:57.628 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:29:57.638 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:29:57.638 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:29:57.648 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms.
17-03-17 23:29:57.648 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms.
17-03-17 23:29:57.648 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:29:57.698 -07 000000482 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:29:57.898 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:29:57.898 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:29:57.898 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:29:58.018 -07 000000502 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:29:58.018 -07 000000502 INF: FPGA: Recv CAMSNAP
17-03-17 23:29:58.018 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 363 ms to get response, and 368 ms overall
17-03-17 23:29:58.018 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-17 23:29:58.148 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 23:29:58.148 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:29:58.148 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:29:58.148 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 248 ms.
17-03-17 23:29:58.218 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:29:58.218 -07 000000433 INF: Autofocus start
17-03-17 23:29:58.218 -07 000000433 INF: MeasureProfile start
17-03-17 23:29:58.218 -07 000000448 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:29:58.228 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:29:58.228 -07 000000623 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:29:58.228 -07 000000433 INF: MeasureProfile done
17-03-17 23:29:58.228 -07 000000433 INF: X=-80  Z correction [um]=-0.3928285
17-03-17 23:29:58.228 -07 000000433 INF: Autofocus finished
17-03-17 23:29:58.408 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 4.011254,
17-03-17 23:29:58.428 -07 000000482 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:29:58.428 -07 000000623 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:29:58.428 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86328125, Z-position -0.136467397123381. ----------
17-03-17 23:29:58.428 -07 000000610 INF: Cycle	76	Tile	13	Exposure Settings		A	476	G	229	T	229	C	476
17-03-17 23:29:58.438 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28237, sync = True, waitForSettling = True)
17-03-17 23:29:58.438 -07 000000610 INF: Z Motor: Moving to -0.129261 mm, started at -0.136467 mm, distance = 7.21 um
17-03-17 23:29:58.448 -07 000000610 INF: FPGA: Xmit ZDACW 28237\n [Z Motor]
17-03-17 23:29:58.448 -07 000000459 INF: FPGA: Recv ZDACW
17-03-17 23:29:58.458 -07 000000610 INF: FPGA: 'ZDACW 28237' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:29:58.458 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:29:58.458 -07 000000512 INF: FPGA: Recv ZDACR 28237
17-03-17 23:29:58.468 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:58.468 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:29:58.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:58.618 -07 000000576 INF: FPGA: Recv ZSGSRD 29410
17-03-17 23:29:58.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:29:58.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:58.628 -07 000000438 INF: FPGA: Recv ZSGSRD 29412
17-03-17 23:29:58.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:58.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:58.638 -07 000000512 INF: FPGA: Recv ZSGSRD 29415
17-03-17 23:29:58.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:58.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:58.648 -07 000000623 INF: FPGA: Recv ZSGSRD 29407
17-03-17 23:29:58.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:58.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:58.658 -07 000000547 INF: FPGA: Recv ZSGSRD 29410
17-03-17 23:29:58.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:58.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:58.668 -07 000000512 INF: FPGA: Recv ZSGSRD 29413
17-03-17 23:29:58.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:58.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:58.678 -07 000000486 INF: FPGA: Recv ZSGSRD 29412
17-03-17 23:29:58.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:58.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:58.688 -07 000000561 INF: FPGA: Recv ZSGSRD 29404
17-03-17 23:29:58.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:58.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:58.698 -07 000000623 INF: FPGA: Recv ZSGSRD 29407
17-03-17 23:29:58.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:58.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:29:58.708 -07 000000502 INF: FPGA: Recv ZSGSRD 29416
17-03-17 23:29:58.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:58.718 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:29:58.718 -07 000000512 INF: FPGA: Recv ZPIEZORD 24935
17-03-17 23:29:58.728 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:29:58.728 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.309 V. Piezo Error = -9.8 V.
17-03-17 23:29:58.728 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.3 um, Read 10 ADC samples: Avg = 29411 (-128.5 uncal um), Error = 0.8 uncal um, Median = 29411 (-128.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29404 (-128.4 uncal um), Max = 29416 (-128.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 23:29:58.728 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29411, posNoise = 5, negNoise = 7
17-03-17 23:29:58.728 -07 000000610 INF: Z Motor: After move to -0.129261, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:29:58.728 -07 000000610 INF: Z Motor: MoveAbsStepped took 290 ms)
17-03-17 23:29:58.728 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:29:58.728 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:29:58.728 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:29:58.728 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:29:58.728 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:29:58.728 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:29:58.728 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms.
17-03-17 23:29:58.728 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:29:58.728 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:29:58.728 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:29:58.728 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:29:58.728 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:29:58.728 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 23:29:58.728 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:29:58.738 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:29:58.738 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:29:58.738 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 10 ms.
17-03-17 23:29:58.738 -07 000000502 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:29:58.748 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms.
17-03-17 23:29:58.748 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 15 ms.
17-03-17 23:29:58.748 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 476 476 229 229 28414 150\n [Camera]
17-03-17 23:29:58.948 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:29:59.418 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 668
17-03-17 23:29:59.418 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 668
17-03-17 23:29:59.418 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:29:59.428 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 668
17-03-17 23:29:59.428 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 668
17-03-17 23:29:59.428 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:29:59.428 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:29:59.428 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 23:29:59.428 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:29:59.428 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 23:29:59.618 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28414 861
17-03-17 23:29:59.768 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1011
17-03-17 23:29:59.798 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 368 ms.
17-03-17 23:29:59.798 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 368 ms.
17-03-17 23:29:59.798 -07 000000475 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:29:59.808 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:29:59.808 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 23:29:59.808 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 23:29:59.808 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:29:59.808 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:29:59.808 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 385 ms.
17-03-17 23:29:59.808 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 23:29:59.998 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1240
17-03-17 23:29:59.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1240
17-03-17 23:29:59.998 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:29:59.998 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:29:59.998 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1145516880, 0x0, 391868352) start.
17-03-17 23:29:59.998 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1240
17-03-17 23:29:59.998 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1240
17-03-17 23:29:59.998 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:29:59.998 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:29:59.998 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 23:30:00.188 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1433
17-03-17 23:30:00.188 -07 000000561 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:30:00.188 -07 000000610 INF: FPGA: 'CAMDBLSNAP 476 476 229 229 28414 150' command took 2 ms to send, 1435 ms to get response, and 1442 ms overall
17-03-17 23:30:00.188 -07 000000610 INF: Skipping AutoFocus in Tile 14: adopting Best-Z from the cache: -0.129605
17-03-17 23:30:00.188 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.12960 mm
17-03-17 23:30:00.188 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:30:00.188 -07 000000627 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True)
17-03-17 23:30:00.188 -07 000000627 INF: Y Motor: Moving to 70.7026 mm, started at 69.8633 mm, delta = 0.8393 mm
17-03-17 23:30:00.188 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:30:00.188 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 28312, sync = True, waitForSettling = False)
17-03-17 23:30:00.198 -07 000000618 INF: Z Motor: Moving to -0.129604 mm, started at -0.129266 mm, distance = -0.34 um
17-03-17 23:30:00.198 -07 000000618 INF: FPGA: Xmit ZDACW 28312\n [Z Motor]
17-03-17 23:30:00.198 -07 000000623 INF: FPGA: Recv YRDPOS 143081
17-03-17 23:30:00.198 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 23:30:00.198 -07 000000627 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:30:00.198 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 23:30:00.198 -07 000000627 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:30:00.198 -07 000000627 INF: Y Motor: Moving 1342 steps-19
17-03-17 23:30:00.208 -07 000000618 INF: FPGA: 'ZDACW 28312' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:00.208 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:30:00.208 -07 000000623 INF: FPGA: Recv ZDACR 28312
17-03-17 23:30:00.218 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:00.218 -07 000000618 INF: Z Motor: MoveAbsStepped took 20 ms (did NOT wait for settling yet))
17-03-17 23:30:00.218 -07 000000627 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:30:00.378 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 380 ms.
17-03-17 23:30:00.378 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms.
17-03-17 23:30:00.378 -07 000000409 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:30:00.378 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1145516880, 0x0, 391868352) end. Duration was 383 ms.
17-03-17 23:30:00.378 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 23:30:00.378 -07 000000576 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:30:00.378 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:30:00.388 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms.
17-03-17 23:30:00.388 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 392 ms.
17-03-17 23:30:00.508 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 505 ms.
17-03-17 23:30:00.588 -07 000000486 INF: FPGA: Recv YMVTILE
17-03-17 23:30:00.588 -07 000000627 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall
17-03-17 23:30:00.638 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:30:00.638 -07 000000433 INF: FPGA: Recv YRDPOS 144770
17-03-17 23:30:00.648 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:30:00.648 -07 000000627 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:30:00.648 -07 000000627 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 23:30:00.648 -07 000000627 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.839 mm, average velocity = 2.136 mm/sec
17-03-17 23:30:01.598 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:30:01.598 -07 000000512 INF: FPGA: Recv YRDPOS 144770
17-03-17 23:30:01.608 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:30:01.608 -07 000000627 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:30:01.628 -07 000000627 INF: Y Motor: After move to 70.702606, error = -0.014130, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:30:01.628 -07 000000627 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:30:01.628 -07 000000627 INF: Y Motor: Moved to 70.6885 after 1437 ms (table move)
17-03-17 23:30:01.628 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.129604 mm (DAC = 28312)
17-03-17 23:30:01.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:01.638 -07 000000433 INF: FPGA: Recv ZSGSRD 29466
17-03-17 23:30:01.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:30:01.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:01.648 -07 000000623 INF: FPGA: Recv ZSGSRD 29468
17-03-17 23:30:01.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:01.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:01.658 -07 000000482 INF: FPGA: Recv ZSGSRD 29467
17-03-17 23:30:01.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:01.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:01.668 -07 000000561 INF: FPGA: Recv ZSGSRD 29464
17-03-17 23:30:01.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:01.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:01.678 -07 000000627 INF: FPGA: Recv ZSGSRD 29463
17-03-17 23:30:01.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:01.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:01.688 -07 000000459 INF: FPGA: Recv ZSGSRD 29466
17-03-17 23:30:01.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:01.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:01.698 -07 000000623 INF: FPGA: Recv ZSGSRD 29463
17-03-17 23:30:01.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:01.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:01.708 -07 000000480 INF: FPGA: Recv ZSGSRD 29460
17-03-17 23:30:01.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:01.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:01.718 -07 000000512 INF: FPGA: Recv ZSGSRD 29465
17-03-17 23:30:01.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:01.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:01.728 -07 000000482 INF: FPGA: Recv ZSGSRD 29468
17-03-17 23:30:01.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:01.738 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:30:01.738 -07 000000409 INF: FPGA: Recv ZPIEZORD 25030
17-03-17 23:30:01.748 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:01.748 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.320 V. Piezo Error = -9.7 V.
17-03-17 23:30:01.748 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.6 um, Read 10 ADC samples: Avg = 29465 (-128.8 uncal um), Error = 0.8 uncal um, Median = 29466 (-128.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 29460 (-128.8 uncal um), Max = 29468 (-128.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um)
17-03-17 23:30:01.748 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29465, posNoise = 3, negNoise = 5
17-03-17 23:30:01.748 -07 000000610 INF: Z Motor: After move to -0.129604, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:30:01.748 -07 000000610 INF: Z Motor: Settle wait time = 1439 ms, measure time = 111 ms (allowed 150 ms), total time = 1550 ms
17-03-17 23:30:01.748 -07 000000610 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms
17-03-17 23:30:01.788 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1592 ms
17-03-17 23:30:01.788 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:30:01.788 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6884765625, Z-position -0.129612762768122. ----------
17-03-17 23:30:01.788 -07 000000610 INF: Cycle	76	Tile	14	Exposure Settings		A	476	G	229	T	229	C	476
17-03-17 23:30:01.788 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28135, sync = True, waitForSettling = True)
17-03-17 23:30:01.788 -07 000000610 INF: Z Motor: Moving to -0.128794 mm, started at -0.129613 mm, distance = 0.82 um
17-03-17 23:30:01.788 -07 000000610 INF: FPGA: Xmit ZDACW 28135\n [Z Motor]
17-03-17 23:30:01.788 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 23:30:01.798 -07 000000610 INF: FPGA: 'ZDACW 28135' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:30:01.798 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:30:01.798 -07 000000618 INF: FPGA: Recv ZDACR 28135
17-03-17 23:30:01.808 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:01.808 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:30:01.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:01.958 -07 000000541 INF: FPGA: Recv ZSGSRD 29341
17-03-17 23:30:01.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:01.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:01.968 -07 000000482 INF: FPGA: Recv ZSGSRD 29343
17-03-17 23:30:01.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:01.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:01.978 -07 000000448 INF: FPGA: Recv ZSGSRD 29343
17-03-17 23:30:01.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:01.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:01.988 -07 000000512 INF: FPGA: Recv ZSGSRD 29329
17-03-17 23:30:01.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:01.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:01.998 -07 000000547 INF: FPGA: Recv ZSGSRD 29336
17-03-17 23:30:02.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:02.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:02.008 -07 000000433 INF: FPGA: Recv ZSGSRD 29340
17-03-17 23:30:02.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:02.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:02.018 -07 000000482 INF: FPGA: Recv ZSGSRD 29344
17-03-17 23:30:02.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:02.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:02.028 -07 000000448 INF: FPGA: Recv ZSGSRD 29336
17-03-17 23:30:02.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:02.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:02.038 -07 000000502 INF: FPGA: Recv ZSGSRD 29337
17-03-17 23:30:02.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:02.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:02.048 -07 000000618 INF: FPGA: Recv ZSGSRD 29341
17-03-17 23:30:02.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:02.058 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:30:02.058 -07 000000627 INF: FPGA: Recv ZPIEZORD 24860
17-03-17 23:30:02.068 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:02.068 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.293 V. Piezo Error = -9.8 V.
17-03-17 23:30:02.068 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.8 um, Read 10 ADC samples: Avg = 29339 (-128.0 uncal um), Error = 0.8 uncal um, Median = 29340 (-128.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29329 (-128.0 uncal um), Max = 29344 (-128.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 23:30:02.068 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29339, posNoise = 5, negNoise = 10
17-03-17 23:30:02.068 -07 000000610 INF: Z Motor: After move to -0.128794, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:30:02.068 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms)
17-03-17 23:30:02.068 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:30:02.068 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:30:02.068 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:30:02.068 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:30:02.068 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:30:02.068 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:30:02.068 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:30:02.068 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:30:02.068 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:30:02.068 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:30:02.068 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:30:02.068 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:30:02.068 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:30:02.078 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 23:30:02.078 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:30:02.078 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 75. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1215, R2=1270, Total=2485. Warn if over 250 bubbles per interval.
17-03-17 23:30:02.078 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:30:02.078 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:30:02.078 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 8 ms.
17-03-17 23:30:02.078 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms.
17-03-17 23:30:02.088 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms.
17-03-17 23:30:02.088 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 14 ms.
17-03-17 23:30:02.088 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 476 476 229 229 28312 150\n [Camera]
17-03-17 23:30:02.288 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:30:02.758 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 668
17-03-17 23:30:02.758 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 668
17-03-17 23:30:02.758 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:30:02.768 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 668
17-03-17 23:30:02.768 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 668
17-03-17 23:30:02.768 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:30:02.768 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:30:02.768 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 23:30:02.778 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:30:02.778 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1145516880, 0x0, 418435064) start.
17-03-17 23:30:02.958 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28312 861
17-03-17 23:30:03.108 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1011
17-03-17 23:30:03.138 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 373 ms.
17-03-17 23:30:03.138 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 23:30:03.138 -07 000000618 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:30:03.148 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:30:03.148 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 23:30:03.148 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1145516880, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 23:30:03.148 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 372 ms.
17-03-17 23:30:03.148 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:30:03.148 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:30:03.158 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms.
17-03-17 23:30:03.338 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1240
17-03-17 23:30:03.338 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1240
17-03-17 23:30:03.338 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:30:03.338 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:30:03.338 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 23:30:03.338 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1240
17-03-17 23:30:03.338 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1240
17-03-17 23:30:03.338 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:30:03.338 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:30:03.338 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 23:30:03.528 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP 1432
17-03-17 23:30:03.528 -07 000000618 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:30:03.528 -07 000000610 INF: FPGA: 'CAMDBLSNAP 476 476 229 229 28312 150' command took 2 ms to send, 1432 ms to get response, and 1439 ms overall
17-03-17 23:30:03.528 -07 000000610 INF: Skipping AutoFocus in Tile 15: adopting Best-Z from the cache: -0.129504
17-03-17 23:30:03.528 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.12950 mm
17-03-17 23:30:03.528 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:30:03.528 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True)
17-03-17 23:30:03.528 -07 000000541 INF: Y Motor: Moving to 71.5326 mm, started at 70.6885 mm, delta = 0.8441 mm
17-03-17 23:30:03.528 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:30:03.528 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 28290, sync = True, waitForSettling = False)
17-03-17 23:30:03.528 -07 000000486 INF: Z Motor: Moving to -0.129503 mm, started at -0.128803 mm, distance = -0.70 um
17-03-17 23:30:03.528 -07 000000482 INF: FPGA: Recv YRDPOS 144770
17-03-17 23:30:03.538 -07 000000486 INF: FPGA: Xmit ZDACW 28290\n [Z Motor]
17-03-17 23:30:03.538 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:30:03.538 -07 000000541 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:30:03.538 -07 000000541 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:30:03.538 -07 000000541 INF: Y Motor: Moving 1351 steps-29
17-03-17 23:30:03.538 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 23:30:03.548 -07 000000486 INF: FPGA: 'ZDACW 28290' command took 0 ms to send, 0 ms to get response, and 12 ms overall
17-03-17 23:30:03.548 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:30:03.548 -07 000000502 INF: FPGA: Recv ZDACR 28290
17-03-17 23:30:03.558 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:30:03.558 -07 000000486 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:03.558 -07 000000486 INF: Z Motor: MoveAbsStepped took 22 ms (did NOT wait for settling yet))
17-03-17 23:30:03.728 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 387 ms.
17-03-17 23:30:03.728 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 390 ms.
17-03-17 23:30:03.728 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 23:30:03.728 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:30:03.728 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 23:30:03.728 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:30:03.728 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:30:03.728 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:30:03.728 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 23:30:03.738 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 23:30:03.768 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 4.028963,
17-03-17 23:30:03.928 -07 000000547 INF: FPGA: Recv YMVTILE
17-03-17 23:30:03.928 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 23:30:03.968 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:30:03.978 -07 000000480 INF: FPGA: Recv YRDPOS 146471
17-03-17 23:30:03.978 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 23:30:03.978 -07 000000541 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:30:03.978 -07 000000541 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm)
17-03-17 23:30:03.978 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.126 mm/sec
17-03-17 23:30:04.928 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:30:04.928 -07 000000438 INF: FPGA: Recv YRDPOS 146471
17-03-17 23:30:04.938 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:30:04.938 -07 000000541 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:30:04.958 -07 000000541 INF: Y Motor: After move to 71.532608, error = -0.013565, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:30:04.958 -07 000000541 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:30:04.958 -07 000000541 INF: Y Motor: Moved to 71.5190 after 1430 ms (table move)
17-03-17 23:30:04.958 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.129503 mm (DAC = 28290)
17-03-17 23:30:04.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:04.968 -07 000000486 INF: FPGA: Recv ZSGSRD 29450
17-03-17 23:30:04.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 23:30:04.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:04.968 -07 000000623 INF: FPGA: Recv ZSGSRD 29457
17-03-17 23:30:04.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:30:04.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:04.978 -07 000000547 INF: FPGA: Recv ZSGSRD 29439
17-03-17 23:30:04.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:04.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:04.988 -07 000000433 INF: FPGA: Recv ZSGSRD 29446
17-03-17 23:30:04.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:04.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:04.998 -07 000000502 INF: FPGA: Recv ZSGSRD 29447
17-03-17 23:30:05.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:05.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:05.008 -07 000000486 INF: FPGA: Recv ZSGSRD 29454
17-03-17 23:30:05.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:05.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:05.018 -07 000000482 INF: FPGA: Recv ZSGSRD 29449
17-03-17 23:30:05.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:05.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:05.028 -07 000000576 INF: FPGA: Recv ZSGSRD 29445
17-03-17 23:30:05.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:05.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:05.038 -07 000000480 INF: FPGA: Recv ZSGSRD 29450
17-03-17 23:30:05.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:05.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:05.048 -07 000000512 INF: FPGA: Recv ZSGSRD 29450
17-03-17 23:30:05.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:05.058 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:30:05.058 -07 000000438 INF: FPGA: Recv ZPIEZORD 25020
17-03-17 23:30:05.068 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:05.068 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.317 V. Piezo Error = -9.7 V.
17-03-17 23:30:05.068 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.5 um, Read 10 ADC samples: Avg = 29449 (-128.7 uncal um), Error = 0.8 uncal um, Median = 29450 (-128.7 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 29439 (-128.7 uncal um), Max = 29457 (-128.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 23:30:05.068 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29449, posNoise = 8, negNoise = 10
17-03-17 23:30:05.068 -07 000000610 INF: Z Motor: After move to -0.129503, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:30:05.068 -07 000000610 INF: Z Motor: Settle wait time = 1431 ms, measure time = 102 ms (allowed 150 ms), total time = 1533 ms
17-03-17 23:30:05.068 -07 000000610 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 23:30:05.118 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1585 ms
17-03-17 23:30:05.118 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:30:05.118 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51904296875, Z-position -0.129509975373853. ----------
17-03-17 23:30:05.118 -07 000000610 INF: Cycle	76	Tile	15	Exposure Settings		A	476	G	229	T	229	C	476
17-03-17 23:30:05.118 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28113, sync = True, waitForSettling = True)
17-03-17 23:30:05.118 -07 000000610 INF: Z Motor: Moving to -0.128693 mm, started at -0.129510 mm, distance = 0.82 um
17-03-17 23:30:05.118 -07 000000610 INF: FPGA: Xmit ZDACW 28113\n [Z Motor]
17-03-17 23:30:05.118 -07 000000512 INF: FPGA: Recv ZDACW
17-03-17 23:30:05.128 -07 000000610 INF: FPGA: 'ZDACW 28113' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:30:05.128 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:30:05.128 -07 000000438 INF: FPGA: Recv ZDACR 28113
17-03-17 23:30:05.138 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:05.138 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:30:05.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:05.288 -07 000000482 INF: FPGA: Recv ZSGSRD 29319
17-03-17 23:30:05.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:30:05.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:05.298 -07 000000623 INF: FPGA: Recv ZSGSRD 29320
17-03-17 23:30:05.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:05.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:05.308 -07 000000547 INF: FPGA: Recv ZSGSRD 29320
17-03-17 23:30:05.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:05.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:05.318 -07 000000409 INF: FPGA: Recv ZSGSRD 29321
17-03-17 23:30:05.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:05.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:05.328 -07 000000502 INF: FPGA: Recv ZSGSRD 29327
17-03-17 23:30:05.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:05.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:05.338 -07 000000541 INF: FPGA: Recv ZSGSRD 29330
17-03-17 23:30:05.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:05.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:05.348 -07 000000623 INF: FPGA: Recv ZSGSRD 29318
17-03-17 23:30:05.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:05.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:05.358 -07 000000480 INF: FPGA: Recv ZSGSRD 29322
17-03-17 23:30:05.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:05.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:05.368 -07 000000409 INF: FPGA: Recv ZSGSRD 29324
17-03-17 23:30:05.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:05.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:05.378 -07 000000438 INF: FPGA: Recv ZSGSRD 29322
17-03-17 23:30:05.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:05.388 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:30:05.388 -07 000000482 INF: FPGA: Recv ZPIEZORD 24835
17-03-17 23:30:05.398 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:05.398 -07 000000610 INF: Z Motor: Piezo is near 33.1 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.290 V. Piezo Error = -9.8 V.
17-03-17 23:30:05.398 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.7 um, Read 10 ADC samples: Avg = 29322 (-127.9 uncal um), Error = 0.8 uncal um, Median = 29322 (-127.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29318 (-127.9 uncal um), Max = 29330 (-128.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um)
17-03-17 23:30:05.398 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29322, posNoise = 8, negNoise = 4
17-03-17 23:30:05.398 -07 000000610 INF: Z Motor: After move to -0.128693, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:30:05.398 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 23:30:05.398 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:30:05.398 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:30:05.398 -07 000000409 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:30:05.398 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:30:05.398 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:30:05.398 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:30:05.398 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:30:05.398 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:30:05.398 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:30:05.398 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:30:05.398 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:30:05.398 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:30:05.398 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 23:30:05.398 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:30:05.408 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:30:05.408 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:30:05.418 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 23:30:05.418 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms.
17-03-17 23:30:05.418 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms.
17-03-17 23:30:05.418 -07 000000512 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 23:30:05.418 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 476 476 229 229 28290 150\n [Camera]
17-03-17 23:30:05.618 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:30:06.098 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 668
17-03-17 23:30:06.098 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 668
17-03-17 23:30:06.098 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:30:06.098 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:30:06.098 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 23:30:06.098 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 668
17-03-17 23:30:06.098 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 668
17-03-17 23:30:06.098 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:30:06.098 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:30:06.098 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 23:30:06.288 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28290 865
17-03-17 23:30:06.438 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1011
17-03-17 23:30:06.478 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 376 ms.
17-03-17 23:30:06.478 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 376 ms.
17-03-17 23:30:06.478 -07 000000623 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:30:06.478 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 23:30:06.478 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 23:30:06.478 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:30:06.478 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 23:30:06.478 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 23:30:06.478 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:30:06.488 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 23:30:06.668 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1240
17-03-17 23:30:06.668 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1240
17-03-17 23:30:06.668 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:30:06.808 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1240
17-03-17 23:30:06.808 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1240
17-03-17 23:30:06.808 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:30:06.818 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:30:06.818 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start.
17-03-17 23:30:06.818 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:30:06.818 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1145516880, 0x0, 418435064) start.
17-03-17 23:30:06.858 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 1433
17-03-17 23:30:06.858 -07 000000541 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:30:06.858 -07 000000610 INF: FPGA: 'CAMDBLSNAP 476 476 229 229 28290 150' command took 2 ms to send, 1436 ms to get response, and 1439 ms overall
17-03-17 23:30:06.858 -07 000000610 INF: Skipping AutoFocus in Tile 16: adopting Best-Z from the cache: -0.129103
17-03-17 23:30:06.858 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.12910 mm
17-03-17 23:30:06.858 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:30:06.868 -07 000000547 INF: Z Motor: Entering MoveAbsStepped (DAC = 28203, sync = True, waitForSettling = False)
17-03-17 23:30:06.868 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True)
17-03-17 23:30:06.868 -07 000000502 INF: Y Motor: Moving to 72.3626 mm, started at 71.5190 mm, delta = 0.8436 mm
17-03-17 23:30:06.868 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:30:06.868 -07 000000547 INF: Z Motor: Moving to -0.129105 mm, started at -0.128694 mm, distance = -0.41 um
17-03-17 23:30:06.868 -07 000000512 INF: FPGA: Recv YRDPOS 146471
17-03-17 23:30:06.878 -07 000000547 INF: FPGA: Xmit ZDACW 28203\n [Z Motor]
17-03-17 23:30:06.878 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:30:06.878 -07 000000502 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:30:06.878 -07 000000502 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:30:06.878 -07 000000502 INF: Y Motor: Moving 1350 steps-28
17-03-17 23:30:06.878 -07 000000475 INF: FPGA: Recv ZDACW
17-03-17 23:30:06.888 -07 000000547 INF: FPGA: 'ZDACW 28203' command took 0 ms to send, 0 ms to get response, and 17 ms overall
17-03-17 23:30:06.888 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:30:06.898 -07 000000547 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:30:06.898 -07 000000475 INF: FPGA: Recv ZDACR 28203
17-03-17 23:30:06.908 -07 000000547 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:30:06.908 -07 000000547 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet))
17-03-17 23:30:07.078 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:30:07.078 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 75. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1215, R2=1270, Total=2485. Warn if over 250 bubbles per interval.
17-03-17 23:30:07.188 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1145516880, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 23:30:07.188 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 23:30:07.188 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:30:07.198 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:30:07.198 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 23:30:07.198 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms.
17-03-17 23:30:07.198 -07 000000438 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:30:07.198 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:30:07.198 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 533 ms.
17-03-17 23:30:07.208 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 393 ms.
17-03-17 23:30:07.268 -07 000000482 INF: FPGA: Recv YMVTILE
17-03-17 23:30:07.268 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 372 ms to get response, and 391 ms overall
17-03-17 23:30:07.308 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:30:07.308 -07 000000480 INF: FPGA: Recv YRDPOS 148172
17-03-17 23:30:07.318 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:30:07.318 -07 000000502 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:30:07.318 -07 000000502 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm)
17-03-17 23:30:07.318 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.844 mm, average velocity = 2.157 mm/sec
17-03-17 23:30:08.268 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:30:08.268 -07 000000448 INF: FPGA: Recv YRDPOS 148172
17-03-17 23:30:08.278 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:30:08.278 -07 000000502 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:30:08.298 -07 000000502 INF: Y Motor: After move to 72.362610, error = -0.013000, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:30:08.298 -07 000000502 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:30:08.298 -07 000000502 INF: Y Motor: Moved to 72.3496 after 1435 ms (table move)
17-03-17 23:30:08.298 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.129105 mm (DAC = 28203)
17-03-17 23:30:08.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:08.308 -07 000000541 INF: FPGA: Recv ZSGSRD 29383
17-03-17 23:30:08.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 3 ms overall
17-03-17 23:30:08.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:08.308 -07 000000438 INF: FPGA: Recv ZSGSRD 29394
17-03-17 23:30:08.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:30:08.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:08.318 -07 000000623 INF: FPGA: Recv ZSGSRD 29389
17-03-17 23:30:08.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:08.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:08.328 -07 000000482 INF: FPGA: Recv ZSGSRD 29378
17-03-17 23:30:08.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:08.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:08.338 -07 000000502 INF: FPGA: Recv ZSGSRD 29384
17-03-17 23:30:08.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:08.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:08.348 -07 000000627 INF: FPGA: Recv ZSGSRD 29389
17-03-17 23:30:08.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:08.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:08.358 -07 000000561 INF: FPGA: Recv ZSGSRD 29388
17-03-17 23:30:08.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:08.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:08.368 -07 000000623 INF: FPGA: Recv ZSGSRD 29394
17-03-17 23:30:08.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:08.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:08.378 -07 000000482 INF: FPGA: Recv ZSGSRD 29384
17-03-17 23:30:08.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:08.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:08.388 -07 000000409 INF: FPGA: Recv ZSGSRD 29390
17-03-17 23:30:08.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:08.398 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:30:08.398 -07 000000433 INF: FPGA: Recv ZPIEZORD 24964
17-03-17 23:30:08.408 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:08.408 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.304 V. Piezo Error = -9.7 V.
17-03-17 23:30:08.408 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.1 um, Read 10 ADC samples: Avg = 29387 (-128.3 uncal um), Error = 0.8 uncal um, Median = 29388 (-128.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29378 (-128.3 uncal um), Max = 29394 (-128.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um)
17-03-17 23:30:08.408 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29387, posNoise = 7, negNoise = 9
17-03-17 23:30:08.408 -07 000000610 INF: Z Motor: After move to -0.129105, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:30:08.408 -07 000000610 INF: Z Motor: Settle wait time = 1437 ms, measure time = 101 ms (allowed 150 ms), total time = 1538 ms
17-03-17 23:30:08.408 -07 000000610 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms
17-03-17 23:30:08.458 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms
17-03-17 23:30:08.458 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:30:08.458 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.349609375, Z-position -0.129111674221064. ----------
17-03-17 23:30:08.458 -07 000000610 INF: Cycle	76	Tile	16	Exposure Settings		A	476	G	229	T	229	C	476
17-03-17 23:30:08.458 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28026, sync = True, waitForSettling = True)
17-03-17 23:30:08.458 -07 000000610 INF: Z Motor: Moving to -0.128295 mm, started at -0.129112 mm, distance = 0.82 um
17-03-17 23:30:08.458 -07 000000610 INF: FPGA: Xmit ZDACW 28026\n [Z Motor]
17-03-17 23:30:08.458 -07 000000486 INF: FPGA: Recv ZDACW
17-03-17 23:30:08.468 -07 000000610 INF: FPGA: 'ZDACW 28026' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:30:08.468 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:30:08.468 -07 000000459 INF: FPGA: Recv ZDACR 28026
17-03-17 23:30:08.478 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:30:08.478 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:30:08.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:08.628 -07 000000475 INF: FPGA: Recv ZSGSRD 29258
17-03-17 23:30:08.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:30:08.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:08.638 -07 000000482 INF: FPGA: Recv ZSGSRD 29264
17-03-17 23:30:08.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:08.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:08.648 -07 000000502 INF: FPGA: Recv ZSGSRD 29257
17-03-17 23:30:08.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:08.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:08.658 -07 000000480 INF: FPGA: Recv ZSGSRD 29258
17-03-17 23:30:08.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:08.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:08.668 -07 000000627 INF: FPGA: Recv ZSGSRD 29261
17-03-17 23:30:08.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:08.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:08.678 -07 000000475 INF: FPGA: Recv ZSGSRD 29270
17-03-17 23:30:08.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:08.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:08.688 -07 000000541 INF: FPGA: Recv ZSGSRD 29266
17-03-17 23:30:08.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:08.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:08.698 -07 000000502 INF: FPGA: Recv ZSGSRD 29259
17-03-17 23:30:08.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:08.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:08.708 -07 000000433 INF: FPGA: Recv ZSGSRD 29253
17-03-17 23:30:08.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:08.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:08.718 -07 000000576 INF: FPGA: Recv ZSGSRD 29264
17-03-17 23:30:08.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:08.728 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:30:08.728 -07 000000623 INF: FPGA: Recv ZPIEZORD 24803
17-03-17 23:30:08.738 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:08.738 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.276 V. Piezo Error = -9.8 V.
17-03-17 23:30:08.738 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.3 um, Read 10 ADC samples: Avg = 29261 (-127.5 uncal um), Error = 0.8 uncal um, Median = 29260 (-127.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 29253 (-127.5 uncal um), Max = 29270 (-127.6 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 23:30:08.738 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29261, posNoise = 9, negNoise = 8
17-03-17 23:30:08.738 -07 000000610 INF: Z Motor: After move to -0.128295, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:30:08.738 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms)
17-03-17 23:30:08.738 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:30:08.738 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:30:08.738 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:30:08.738 -07 000000409 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:30:08.738 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:30:08.738 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:30:08.738 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:30:08.738 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:30:08.738 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:30:08.738 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:30:08.738 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:30:08.738 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:30:08.748 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms.
17-03-17 23:30:08.748 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:30:08.748 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 23:30:08.748 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:30:08.758 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 23:30:08.758 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 23:30:08.758 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 23:30:08.758 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 23:30:08.768 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 476 476 229 229 28203 150\n [Camera]
17-03-17 23:30:08.968 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:30:09.128 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 4.024884,
17-03-17 23:30:09.438 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 668
17-03-17 23:30:09.438 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 668
17-03-17 23:30:09.438 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:30:09.438 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:30:09.438 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 23:30:09.448 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 668
17-03-17 23:30:09.448 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 668
17-03-17 23:30:09.448 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:30:09.448 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:30:09.448 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 23:30:09.628 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28203 861
17-03-17 23:30:09.778 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1011
17-03-17 23:30:09.818 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 372 ms.
17-03-17 23:30:09.818 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 23:30:09.818 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:30:09.818 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 23:30:09.818 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 23:30:09.818 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:30:09.818 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:30:09.828 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:30:09.828 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 383 ms.
17-03-17 23:30:09.828 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 23:30:10.008 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1240
17-03-17 23:30:10.008 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1240
17-03-17 23:30:10.008 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:30:10.018 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:30:10.018 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start.
17-03-17 23:30:10.018 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1240
17-03-17 23:30:10.018 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1240
17-03-17 23:30:10.018 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:30:10.138 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:30:10.138 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 23:30:10.208 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 1433
17-03-17 23:30:10.208 -07 000000448 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:30:10.208 -07 000000610 INF: FPGA: 'CAMDBLSNAP 476 476 229 229 28203 150' command took 2 ms to send, 1430 ms to get response, and 1439 ms overall
17-03-17 23:30:10.208 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503
17-03-17 23:30:10.208 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.349609375, Z-Position -0.128302223491202. ------
17-03-17 23:30:10.208 -07 000000475 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13491 mm
17-03-17 23:30:10.208 -07 000000475 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:30:10.208 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:30:10.218 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 29471, sync = True, waitForSettling = False)
17-03-17 23:30:10.218 -07 000000627 INF: Z Motor: Moving to -0.134910 mm, started at -0.128302 mm, distance = -6.61 um
17-03-17 23:30:10.218 -07 000000627 INF: FPGA: Xmit ZDACW 29471\n [Z Motor]
17-03-17 23:30:10.218 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True)
17-03-17 23:30:10.218 -07 000000541 INF: Y Motor: Moving to 73.1926 mm, started at 72.3496 mm, delta = 0.8430 mm
17-03-17 23:30:10.218 -07 000000512 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:30:10.218 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 4 ms overall
17-03-17 23:30:10.218 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 23:30:10.228 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:30:10.228 -07 000000627 INF: FPGA: 'ZDACW 29471' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:10.228 -07 000000438 INF: FPGA: Recv YRDPOS 148172
17-03-17 23:30:10.238 -07 000000482 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror]
17-03-17 23:30:10.238 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall
17-03-17 23:30:10.238 -07 000000541 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:30:10.238 -07 000000541 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:30:10.238 -07 000000541 INF: Y Motor: Moving 1349 steps-27
17-03-17 23:30:10.248 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:30:10.248 -07 000000409 INF: FPGA: Recv ZDACR 29471
17-03-17 23:30:10.258 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:30:10.258 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall
17-03-17 23:30:10.258 -07 000000627 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet))
17-03-17 23:30:10.398 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 380 ms.
17-03-17 23:30:10.398 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 23:30:10.398 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:30:10.398 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:30:10.398 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 23:30:10.438 -07 000000459 INF: FPGA: Recv FOCMRRFOC
17-03-17 23:30:10.438 -07 000000482 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 220 ms overall
17-03-17 23:30:10.508 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 373 ms.
17-03-17 23:30:10.508 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms.
17-03-17 23:30:10.508 -07 000000433 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:30:10.518 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms.
17-03-17 23:30:10.518 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 504 ms.
17-03-17 23:30:10.628 -07 000000438 INF: FPGA: Recv YMVTILE
17-03-17 23:30:10.628 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 23:30:10.678 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:30:10.678 -07 000000480 INF: FPGA: Recv YRDPOS 149865
17-03-17 23:30:10.688 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:30:10.688 -07 000000541 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:30:10.688 -07 000000541 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm)
17-03-17 23:30:10.688 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.843 mm, average velocity = 2.123 mm/sec
17-03-17 23:30:11.638 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:30:11.638 -07 000000433 INF: FPGA: Recv YRDPOS 149865
17-03-17 23:30:11.648 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:11.648 -07 000000541 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:30:11.668 -07 000000541 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:30:11.668 -07 000000541 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:30:11.668 -07 000000541 INF: Y Motor: Moved to 73.1763 after 1454 ms (table move)
17-03-17 23:30:11.668 -07 000000475 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134910 mm (DAC = 29471)
17-03-17 23:30:11.668 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:11.678 -07 000000627 INF: FPGA: Recv ZSGSRD 30291
17-03-17 23:30:11.678 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 23:30:11.678 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:11.678 -07 000000438 INF: FPGA: Recv ZSGSRD 30295
17-03-17 23:30:11.688 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:30:11.688 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:11.688 -07 000000486 INF: FPGA: Recv ZSGSRD 30287
17-03-17 23:30:11.698 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:11.698 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:11.698 -07 000000541 INF: FPGA: Recv ZSGSRD 30292
17-03-17 23:30:11.708 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:11.708 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:11.708 -07 000000459 INF: FPGA: Recv ZSGSRD 30299
17-03-17 23:30:11.718 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:11.718 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:11.718 -07 000000576 INF: FPGA: Recv ZSGSRD 30293
17-03-17 23:30:11.728 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:11.728 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:11.728 -07 000000561 INF: FPGA: Recv ZSGSRD 30289
17-03-17 23:30:11.738 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:11.738 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:11.738 -07 000000618 INF: FPGA: Recv ZSGSRD 30293
17-03-17 23:30:11.748 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:11.748 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:11.748 -07 000000459 INF: FPGA: Recv ZSGSRD 30286
17-03-17 23:30:11.758 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:11.758 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:11.758 -07 000000576 INF: FPGA: Recv ZSGSRD 30284
17-03-17 23:30:11.768 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:11.768 -07 000000475 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:30:11.768 -07 000000482 INF: FPGA: Recv ZPIEZORD 26120
17-03-17 23:30:11.778 -07 000000475 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:11.778 -07 000000475 INF: Z Motor: Piezo is near 35.8 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.497 V. Piezo Error = -9.2 V.
17-03-17 23:30:11.778 -07 000000475 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.9 um, Read 10 ADC samples: Avg = 30291 (-134.1 uncal um), Error = 0.8 uncal um, Median = 30292 (-134.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30284 (-134.1 uncal um), Max = 30299 (-134.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 23:30:11.778 -07 000000475 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30291, posNoise = 8, negNoise = 7
17-03-17 23:30:11.778 -07 000000475 INF: Z Motor: After move to -0.134910, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:30:11.778 -07 000000475 INF: Z Motor: Settle wait time = 1458 ms, measure time = 102 ms (allowed 150 ms), total time = 1560 ms
17-03-17 23:30:11.778 -07 000000475 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms
17-03-17 23:30:11.828 -07 000000475 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1612 ms
17-03-17 23:30:11.828 -07 000000475 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:30:11.828 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:30:11.828 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:30:11.828 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:30:11.828 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:30:11.828 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger start.
17-03-17 23:30:11.828 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:30:11.828 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:30:11.828 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start.
17-03-17 23:30:11.838 -07 000000459 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms.
17-03-17 23:30:11.838 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start.
17-03-17 23:30:11.848 -07 000000459 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms.
17-03-17 23:30:11.848 -07 000000459 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms.
17-03-17 23:30:11.848 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera]
17-03-17 23:30:11.898 -07 000000433 INF: FPGA: Recv @CAMSNAP turning led on 40
17-03-17 23:30:12.078 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:30:12.078 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 75. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1215, R2=1270, Total=2485. Warn if over 250 bubbles per interval.
17-03-17 23:30:12.098 -07 000000486 INF: FPGA: Recv @CAMSNAP img rdy 240
17-03-17 23:30:12.098 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 240
17-03-17 23:30:12.098 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start.
17-03-17 23:30:12.098 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) start.
17-03-17 23:30:12.138 -07 000000547 INF: FPGA: Recv @CAMSNAP 280
17-03-17 23:30:12.138 -07 000000433 INF: FPGA: Recv CAMSNAP
17-03-17 23:30:12.138 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 283 ms to get response, and 287 ms overall
17-03-17 23:30:12.228 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 608668944, 0x0, 559484976) end. Duration was 126 ms.
17-03-17 23:30:12.228 -07 000000005 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:30:12.228 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms.
17-03-17 23:30:12.228 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms.
17-03-17 23:30:12.238 -07 000000438 INF: Autofocus start
17-03-17 23:30:12.238 -07 000000438 INF: MeasureProfile start
17-03-17 23:30:12.238 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror]
17-03-17 23:30:12.238 -07 000000480 INF: FPGA: Recv FOCMRRCUR 
17-03-17 23:30:12.248 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:30:12.248 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror]
17-03-17 23:30:12.248 -07 000000438 INF: MeasureProfile done
17-03-17 23:30:12.248 -07 000000438 INF: X=3  Z correction [um]=-0.009517147
17-03-17 23:30:12.248 -07 000000438 INF: Autofocus finished
17-03-17 23:30:12.448 -07 000000433 INF: FPGA: Recv FOCMRRIMG
17-03-17 23:30:12.448 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall
17-03-17 23:30:12.448 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.134919161997216. ----------
17-03-17 23:30:12.448 -07 000000610 INF: Cycle	76	Tile	17	Exposure Settings		A	476	G	229	T	229	C	476
17-03-17 23:30:12.458 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27981, sync = True, waitForSettling = True)
17-03-17 23:30:12.458 -07 000000610 INF: Z Motor: Moving to -0.128089 mm, started at -0.134919 mm, distance = 6.83 um
17-03-17 23:30:12.458 -07 000000610 INF: FPGA: Xmit ZDACW 27981\n [Z Motor]
17-03-17 23:30:12.458 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 23:30:12.468 -07 000000610 INF: FPGA: 'ZDACW 27981' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:30:12.468 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:30:12.468 -07 000000547 INF: FPGA: Recv ZDACR 27981
17-03-17 23:30:12.478 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:12.478 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:30:12.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:12.628 -07 000000576 INF: FPGA: Recv ZSGSRD 29228
17-03-17 23:30:12.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:30:12.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:12.638 -07 000000618 INF: FPGA: Recv ZSGSRD 29228
17-03-17 23:30:12.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:12.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:12.648 -07 000000438 INF: FPGA: Recv ZSGSRD 29227
17-03-17 23:30:12.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:12.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:12.658 -07 000000627 INF: FPGA: Recv ZSGSRD 29227
17-03-17 23:30:12.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:12.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:12.668 -07 000000547 INF: FPGA: Recv ZSGSRD 29229
17-03-17 23:30:12.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:12.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:12.678 -07 000000576 INF: FPGA: Recv ZSGSRD 29231
17-03-17 23:30:12.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:12.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:12.688 -07 000000448 INF: FPGA: Recv ZSGSRD 29227
17-03-17 23:30:12.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:12.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:12.698 -07 000000541 INF: FPGA: Recv ZSGSRD 29228
17-03-17 23:30:12.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:12.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:12.708 -07 000000627 INF: FPGA: Recv ZSGSRD 29227
17-03-17 23:30:12.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:12.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:12.718 -07 000000618 INF: FPGA: Recv ZSGSRD 29228
17-03-17 23:30:12.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:12.728 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:30:12.728 -07 000000576 INF: FPGA: Recv ZPIEZORD 24702
17-03-17 23:30:12.738 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:12.738 -07 000000610 INF: Z Motor: Piezo is near 32.8 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.270 V. Piezo Error = -9.9 V.
17-03-17 23:30:12.738 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.1 um, Read 10 ADC samples: Avg = 29228 (-127.3 uncal um), Error = 0.8 uncal um, Median = 29228 (-127.3 uncal um), StdDev = 1 (0.0 uncal um), Range = 4 (0.0 uncal um), Min = 29227 (-127.3 uncal um), Max = 29231 (-127.3 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 1 (0.0 uncal um)
17-03-17 23:30:12.738 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29228, posNoise = 3, negNoise = 1
17-03-17 23:30:12.738 -07 000000610 INF: Z Motor: After move to -0.128089, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:30:12.738 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms)
17-03-17 23:30:12.738 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:30:12.738 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:30:12.738 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:30:12.738 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:30:12.738 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:30:12.738 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:30:12.738 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:30:12.738 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:30:12.738 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:30:12.738 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:30:12.738 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:30:12.738 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:30:12.748 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:30:12.748 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:30:12.748 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms.
17-03-17 23:30:12.748 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:30:12.758 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms.
17-03-17 23:30:12.758 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 23:30:12.758 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms.
17-03-17 23:30:12.758 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 23:30:12.758 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 476 476 229 229 28158 150\n [Camera]
17-03-17 23:30:12.958 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:30:13.438 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 668
17-03-17 23:30:13.438 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 668
17-03-17 23:30:13.438 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:30:13.438 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 668
17-03-17 23:30:13.438 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 668
17-03-17 23:30:13.438 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:30:13.448 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:30:13.448 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1145516880, 0x0, 391868352) start.
17-03-17 23:30:13.448 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:30:13.448 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start.
17-03-17 23:30:13.628 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28158 861
17-03-17 23:30:13.778 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1011
17-03-17 23:30:13.818 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1145516880, 0x0, 391868352) end. Duration was 372 ms.
17-03-17 23:30:13.818 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 373 ms.
17-03-17 23:30:13.818 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:30:13.828 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:30:13.828 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 384 ms.
17-03-17 23:30:13.828 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 371 ms.
17-03-17 23:30:13.828 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 374 ms.
17-03-17 23:30:13.828 -07 000000486 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:30:13.828 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:30:13.838 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms.
17-03-17 23:30:14.008 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1240
17-03-17 23:30:14.008 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1240
17-03-17 23:30:14.008 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:30:14.008 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:30:14.008 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 23:30:14.008 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1240
17-03-17 23:30:14.008 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1240
17-03-17 23:30:14.018 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:30:14.018 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:30:14.018 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start.
17-03-17 23:30:14.198 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP 1433
17-03-17 23:30:14.198 -07 000000502 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:30:14.198 -07 000000610 INF: FPGA: 'CAMDBLSNAP 476 476 229 229 28158 150' command took 2 ms to send, 1428 ms to get response, and 1440 ms overall
17-03-17 23:30:14.208 -07 000000610 INF: Skipping AutoFocus in Tile 18: adopting Best-Z from the cache: -0.128408
17-03-17 23:30:14.208 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.12841 mm
17-03-17 23:30:14.208 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:30:14.208 -07 000000409 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True)
17-03-17 23:30:14.208 -07 000000409 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm
17-03-17 23:30:14.208 -07 000000448 INF: Z Motor: Entering MoveAbsStepped (DAC = 28051, sync = True, waitForSettling = False)
17-03-17 23:30:14.208 -07 000000448 INF: Z Motor: Moving to -0.128409 mm, started at -0.128090 mm, distance = -0.32 um
17-03-17 23:30:14.208 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:30:14.208 -07 000000475 INF: FPGA: Recv YRDPOS 149865
17-03-17 23:30:14.218 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:30:14.218 -07 000000409 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:30:14.218 -07 000000448 INF: FPGA: Xmit ZDACW 28051\n [Z Motor]
17-03-17 23:30:14.218 -07 000000409 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:30:14.218 -07 000000409 INF: Y Motor: Moving 1354 steps-33
17-03-17 23:30:14.218 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 23:30:14.228 -07 000000448 INF: FPGA: 'ZDACW 28051' command took 0 ms to send, 0 ms to get response, and 16 ms overall
17-03-17 23:30:14.228 -07 000000448 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:30:14.228 -07 000000482 INF: FPGA: Recv ZDACR 28051
17-03-17 23:30:14.238 -07 000000448 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:14.238 -07 000000448 INF: Z Motor: MoveAbsStepped took 26 ms (did NOT wait for settling yet))
17-03-17 23:30:14.238 -07 000000409 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:30:14.398 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 385 ms.
17-03-17 23:30:14.398 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 386 ms.
17-03-17 23:30:14.398 -07 000000459 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:30:14.398 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 384 ms.
17-03-17 23:30:14.398 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms.
17-03-17 23:30:14.398 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:30:14.398 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:30:14.408 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms.
17-03-17 23:30:14.408 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 23:30:14.408 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 23:30:14.488 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 4.009895,
17-03-17 23:30:14.608 -07 000000486 INF: FPGA: Recv YMVTILE
17-03-17 23:30:14.608 -07 000000409 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall
17-03-17 23:30:14.648 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:30:14.648 -07 000000448 INF: FPGA: Recv YRDPOS 151569
17-03-17 23:30:14.658 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:30:14.658 -07 000000409 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:30:14.658 -07 000000409 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm)
17-03-17 23:30:14.658 -07 000000409 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.846 mm, average velocity = 2.126 mm/sec
17-03-17 23:30:15.608 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:30:15.608 -07 000000433 INF: FPGA: Recv YRDPOS 151569
17-03-17 23:30:15.618 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:30:15.618 -07 000000409 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:30:15.628 -07 000000409 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:30:15.628 -07 000000409 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:30:15.628 -07 000000409 INF: Y Motor: Moved to 74.0083 after 1425 ms (table move)
17-03-17 23:30:15.638 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.128409 mm (DAC = 28051)
17-03-17 23:30:15.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:15.638 -07 000000433 INF: FPGA: Recv ZSGSRD 29280
17-03-17 23:30:15.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:30:15.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:15.648 -07 000000502 INF: FPGA: Recv ZSGSRD 29276
17-03-17 23:30:15.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:15.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:15.658 -07 000000459 INF: FPGA: Recv ZSGSRD 29280
17-03-17 23:30:15.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:15.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:15.668 -07 000000512 INF: FPGA: Recv ZSGSRD 29280
17-03-17 23:30:15.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:15.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:15.678 -07 000000475 INF: FPGA: Recv ZSGSRD 29283
17-03-17 23:30:15.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:15.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:15.688 -07 000000409 INF: FPGA: Recv ZSGSRD 29279
17-03-17 23:30:15.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:15.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:15.698 -07 000000482 INF: FPGA: Recv ZSGSRD 29281
17-03-17 23:30:15.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:15.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:15.708 -07 000000459 INF: FPGA: Recv ZSGSRD 29281
17-03-17 23:30:15.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:15.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:15.718 -07 000000541 INF: FPGA: Recv ZSGSRD 29271
17-03-17 23:30:15.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:15.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:15.728 -07 000000502 INF: FPGA: Recv ZSGSRD 29279
17-03-17 23:30:15.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:15.738 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:30:15.738 -07 000000480 INF: FPGA: Recv ZPIEZORD 24819
17-03-17 23:30:15.748 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:15.748 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 42.8 V, since DAC is at 4.280 V. Piezo Error = -9.8 V.
17-03-17 23:30:15.748 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.4 um, Read 10 ADC samples: Avg = 29279 (-127.6 uncal um), Error = 0.8 uncal um, Median = 29280 (-127.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29271 (-127.6 uncal um), Max = 29283 (-127.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 23:30:15.748 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29279, posNoise = 4, negNoise = 8
17-03-17 23:30:15.748 -07 000000610 INF: Z Motor: After move to -0.128409, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:30:15.748 -07 000000610 INF: Z Motor: Settle wait time = 1427 ms, measure time = 109 ms (allowed 150 ms), total time = 1536 ms
17-03-17 23:30:15.748 -07 000000610 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 23:30:15.798 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1589 ms
17-03-17 23:30:15.798 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:30:15.798 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.128417859309754. ----------
17-03-17 23:30:15.798 -07 000000610 INF: Cycle	76	Tile	18	Exposure Settings		A	476	G	229	T	229	C	476
17-03-17 23:30:15.798 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27874, sync = True, waitForSettling = True)
17-03-17 23:30:15.798 -07 000000610 INF: Z Motor: Moving to -0.127599 mm, started at -0.128418 mm, distance = 0.82 um
17-03-17 23:30:15.798 -07 000000610 INF: FPGA: Xmit ZDACW 27874\n [Z Motor]
17-03-17 23:30:15.798 -07 000000502 INF: FPGA: Recv ZDACW
17-03-17 23:30:15.808 -07 000000610 INF: FPGA: 'ZDACW 27874' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:30:15.808 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:30:15.808 -07 000000480 INF: FPGA: Recv ZDACR 27874
17-03-17 23:30:15.818 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:30:15.818 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:30:15.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:15.968 -07 000000433 INF: FPGA: Recv ZSGSRD 29156
17-03-17 23:30:15.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:30:15.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:15.978 -07 000000561 INF: FPGA: Recv ZSGSRD 29151
17-03-17 23:30:15.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:15.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:15.988 -07 000000627 INF: FPGA: Recv ZSGSRD 29156
17-03-17 23:30:15.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:15.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:15.998 -07 000000438 INF: FPGA: Recv ZSGSRD 29153
17-03-17 23:30:16.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:16.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:16.008 -07 000000618 INF: FPGA: Recv ZSGSRD 29156
17-03-17 23:30:16.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:16.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:16.018 -07 000000482 INF: FPGA: Recv ZSGSRD 29151
17-03-17 23:30:16.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:16.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:16.028 -07 000000486 INF: FPGA: Recv ZSGSRD 29153
17-03-17 23:30:16.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:16.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:16.038 -07 000000459 INF: FPGA: Recv ZSGSRD 29156
17-03-17 23:30:16.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:16.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:16.048 -07 000000409 INF: FPGA: Recv ZSGSRD 29146
17-03-17 23:30:16.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:16.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:16.058 -07 000000475 INF: FPGA: Recv ZSGSRD 29158
17-03-17 23:30:16.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:16.068 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:30:16.068 -07 000000480 INF: FPGA: Recv ZPIEZORD 24669
17-03-17 23:30:16.078 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:16.078 -07 000000610 INF: Z Motor: Piezo is near 32.7 V (nominally 0 to 100 V), expect near 42.5 V, since DAC is at 4.253 V. Piezo Error = -9.8 V.
17-03-17 23:30:16.078 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.6 um, Read 10 ADC samples: Avg = 29154 (-126.8 uncal um), Error = 0.8 uncal um, Median = 29154 (-126.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29146 (-126.8 uncal um), Max = 29158 (-126.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um)
17-03-17 23:30:16.078 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29154, posNoise = 4, negNoise = 8
17-03-17 23:30:16.078 -07 000000610 INF: Z Motor: After move to -0.127599, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:30:16.078 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms)
17-03-17 23:30:16.078 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:30:16.078 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:30:16.078 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:30:16.078 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:30:16.078 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:30:16.078 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:30:16.078 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:30:16.078 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:30:16.078 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:30:16.078 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:30:16.078 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:30:16.078 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:30:16.088 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms.
17-03-17 23:30:16.088 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:30:16.088 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:30:16.088 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:30:16.098 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 23:30:16.098 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms.
17-03-17 23:30:16.098 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms.
17-03-17 23:30:16.098 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms.
17-03-17 23:30:16.098 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 476 476 229 229 28051 150\n [Camera]
17-03-17 23:30:16.298 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:30:16.778 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 668
17-03-17 23:30:16.778 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 668
17-03-17 23:30:16.778 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 668
17-03-17 23:30:16.778 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 668
17-03-17 23:30:16.778 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:30:16.778 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:30:16.778 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:30:16.778 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 23:30:16.778 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:30:16.778 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 23:30:16.968 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28051 861
17-03-17 23:30:17.078 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:30:17.078 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 75. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1215, R2=1270, Total=2485. Warn if over 250 bubbles per interval.
17-03-17 23:30:17.118 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1011
17-03-17 23:30:17.158 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 23:30:17.158 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 23:30:17.158 -07 000000502 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:30:17.158 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 377 ms.
17-03-17 23:30:17.158 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 377 ms.
17-03-17 23:30:17.158 -07 000000561 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:30:17.158 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:30:17.168 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:30:17.168 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 382 ms.
17-03-17 23:30:17.168 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms.
17-03-17 23:30:17.348 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1240
17-03-17 23:30:17.348 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1240
17-03-17 23:30:17.348 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:30:17.348 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:30:17.348 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start.
17-03-17 23:30:17.358 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1240
17-03-17 23:30:17.358 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1240
17-03-17 23:30:17.358 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:30:17.358 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:30:17.358 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start.
17-03-17 23:30:17.538 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 1433
17-03-17 23:30:17.538 -07 000000438 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:30:17.538 -07 000000610 INF: FPGA: 'CAMDBLSNAP 476 476 229 229 28051 150' command took 2 ms to send, 1428 ms to get response, and 1439 ms overall
17-03-17 23:30:17.548 -07 000000610 INF: Skipping AutoFocus in Tile 19: adopting Best-Z from the cache: -0.127690
17-03-17 23:30:17.548 -07 000000610 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.12769 mm
17-03-17 23:30:17.548 -07 000000610 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move
17-03-17 23:30:17.548 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True)
17-03-17 23:30:17.668 -07 000000576 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm
17-03-17 23:30:17.668 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:30:17.678 -07 000000448 INF: Z Motor: Entering MoveAbsStepped (DAC = 27894, sync = True, waitForSettling = False)
17-03-17 23:30:17.678 -07 000000448 INF: Z Motor: Moving to -0.127691 mm, started at -0.127615 mm, distance = -0.08 um
17-03-17 23:30:17.678 -07 000000448 INF: FPGA: Xmit ZDACW 27894\n [Z Motor]
17-03-17 23:30:17.678 -07 000000541 INF: FPGA: Recv YRDPOS 151569
17-03-17 23:30:17.678 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 2 ms overall
17-03-17 23:30:17.678 -07 000000576 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:30:17.678 -07 000000576 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True
17-03-17 23:30:17.678 -07 000000576 INF: Y Motor: Moving 1351 steps-29
17-03-17 23:30:17.678 -07 000000482 INF: FPGA: Recv ZDACW
17-03-17 23:30:17.688 -07 000000448 INF: FPGA: 'ZDACW 27894' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:17.688 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor]
17-03-17 23:30:17.698 -07 000000448 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:30:17.698 -07 000000482 INF: FPGA: Recv ZDACR 27894
17-03-17 23:30:17.708 -07 000000448 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall
17-03-17 23:30:17.708 -07 000000448 INF: Z Motor: MoveAbsStepped took 30 ms (did NOT wait for settling yet))
17-03-17 23:30:17.738 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 391 ms.
17-03-17 23:30:17.738 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms.
17-03-17 23:30:17.738 -07 000000547 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:30:17.748 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 388 ms.
17-03-17 23:30:17.748 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms.
17-03-17 23:30:17.748 -07 000000627 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:30:17.748 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:30:17.748 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms.
17-03-17 23:30:17.748 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:30:17.758 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms.
17-03-17 23:30:18.058 -07 000000433 INF: FPGA: Recv YMVTILE
17-03-17 23:30:18.058 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 385 ms overall
17-03-17 23:30:18.088 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:30:18.098 -07 000000541 INF: FPGA: Recv YRDPOS 153256
17-03-17 23:30:18.098 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:30:18.098 -07 000000576 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:30:18.098 -07 000000576 INF: Y Motor: Position error before settling (table move) = -42 encoder counts (-0.021 mm)
17-03-17 23:30:18.098 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 386 ms, distance = 0.844 mm, average velocity = 2.187 mm/sec
17-03-17 23:30:19.048 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:30:19.048 -07 000000541 INF: FPGA: Recv YRDPOS 153256
17-03-17 23:30:19.058 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:19.058 -07 000000576 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:30:19.068 -07 000000576 INF: Y Motor: After move to 74.852608, error = -0.020576, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:30:19.068 -07 000000576 INF: Y Motor: Position error after settling (table move) = -42 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:30:19.068 -07 000000576 INF: Y Motor: Moved to 74.8320 after 1399 ms (table move)
17-03-17 23:30:19.078 -07 000000610 INF: Z Motor: EndOfMoveAbsStepped: target = -0.127691 mm (DAC = 27894)
17-03-17 23:30:19.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:19.078 -07 000000409 INF: FPGA: Recv ZSGSRD 29176
17-03-17 23:30:19.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:30:19.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:19.088 -07 000000438 INF: FPGA: Recv ZSGSRD 29166
17-03-17 23:30:19.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:19.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:19.098 -07 000000480 INF: FPGA: Recv ZSGSRD 29163
17-03-17 23:30:19.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:19.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:19.108 -07 000000618 INF: FPGA: Recv ZSGSRD 29161
17-03-17 23:30:19.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:19.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:19.118 -07 000000433 INF: FPGA: Recv ZSGSRD 29169
17-03-17 23:30:19.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:19.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:19.128 -07 000000409 INF: FPGA: Recv ZSGSRD 29169
17-03-17 23:30:19.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:19.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:19.138 -07 000000438 INF: FPGA: Recv ZSGSRD 29174
17-03-17 23:30:19.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:19.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:19.148 -07 000000480 INF: FPGA: Recv ZSGSRD 29168
17-03-17 23:30:19.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:19.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:19.158 -07 000000618 INF: FPGA: Recv ZSGSRD 29172
17-03-17 23:30:19.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:19.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:19.168 -07 000000433 INF: FPGA: Recv ZSGSRD 29165
17-03-17 23:30:19.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:19.178 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:30:19.178 -07 000000486 INF: FPGA: Recv ZPIEZORD 24716
17-03-17 23:30:19.188 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:19.188 -07 000000610 INF: Z Motor: Piezo is near 32.8 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.256 V. Piezo Error = -9.8 V.
17-03-17 23:30:19.188 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.7 um, Read 10 ADC samples: Avg = 29168 (-126.9 uncal um), Error = 0.8 uncal um, Median = 29168 (-126.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29161 (-126.9 uncal um), Max = 29176 (-127.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um)
17-03-17 23:30:19.188 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29168, posNoise = 8, negNoise = 7
17-03-17 23:30:19.188 -07 000000610 INF: Z Motor: After move to -0.127691, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:30:19.188 -07 000000610 INF: Z Motor: Settle wait time = 1401 ms, measure time = 109 ms (allowed 150 ms), total time = 1510 ms
17-03-17 23:30:19.188 -07 000000610 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms
17-03-17 23:30:19.238 -07 000000610 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1687 ms
17-03-17 23:30:19.238 -07 000000610 INF: Y Motor: Restored settling times back to 3000 or 1100 ms
17-03-17 23:30:19.238 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83203125, Z-position -0.127704771762019. ----------
17-03-17 23:30:19.238 -07 000000610 INF: Cycle	76	Tile	19	Exposure Settings		A	476	G	229	T	229	C	476
17-03-17 23:30:19.238 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27717, sync = True, waitForSettling = True)
17-03-17 23:30:19.238 -07 000000610 INF: Z Motor: Moving to -0.126880 mm, started at -0.127705 mm, distance = 0.82 um
17-03-17 23:30:19.238 -07 000000610 INF: FPGA: Xmit ZDACW 27717\n [Z Motor]
17-03-17 23:30:19.238 -07 000000561 INF: FPGA: Recv ZDACW
17-03-17 23:30:19.248 -07 000000610 INF: FPGA: 'ZDACW 27717' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:30:19.248 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor]
17-03-17 23:30:19.248 -07 000000486 INF: FPGA: Recv ZDACR 27717
17-03-17 23:30:19.258 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:19.258 -07 000000610 INF: Z Motor: Waiting 150 ms for short move
17-03-17 23:30:19.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:19.408 -07 000000482 INF: FPGA: Recv ZSGSRD 29031
17-03-17 23:30:19.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:19.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:19.418 -07 000000541 INF: FPGA: Recv ZSGSRD 29047
17-03-17 23:30:19.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:30:19.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:19.428 -07 000000627 INF: FPGA: Recv ZSGSRD 29043
17-03-17 23:30:19.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:19.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:19.438 -07 000000502 INF: FPGA: Recv ZSGSRD 29046
17-03-17 23:30:19.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:19.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:19.448 -07 000000512 INF: FPGA: Recv ZSGSRD 29042
17-03-17 23:30:19.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:19.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:19.458 -07 000000433 INF: FPGA: Recv ZSGSRD 29038
17-03-17 23:30:19.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:19.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:19.468 -07 000000409 INF: FPGA: Recv ZSGSRD 29047
17-03-17 23:30:19.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:19.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:19.478 -07 000000561 INF: FPGA: Recv ZSGSRD 29038
17-03-17 23:30:19.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:19.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:19.488 -07 000000547 INF: FPGA: Recv ZSGSRD 29036
17-03-17 23:30:19.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:19.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor]
17-03-17 23:30:19.498 -07 000000459 INF: FPGA: Recv ZSGSRD 29039
17-03-17 23:30:19.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:19.508 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor]
17-03-17 23:30:19.508 -07 000000547 INF: FPGA: Recv ZPIEZORD 24597
17-03-17 23:30:19.518 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:19.518 -07 000000610 INF: Z Motor: Piezo is near 32.5 V (nominally 0 to 100 V), expect near 42.3 V, since DAC is at 4.229 V. Piezo Error = -9.7 V.
17-03-17 23:30:19.518 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.9 um, Read 10 ADC samples: Avg = 29041 (-126.1 uncal um), Error = 0.8 uncal um, Median = 29040 (-126.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29031 (-126.1 uncal um), Max = 29047 (-126.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um)
17-03-17 23:30:19.518 -07 000000610 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29041, posNoise = 6, negNoise = 10
17-03-17 23:30:19.518 -07 000000610 INF: Z Motor: After move to -0.126880, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm
17-03-17 23:30:19.518 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms)
17-03-17 23:30:19.518 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current
17-03-17 23:30:19.518 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current
17-03-17 23:30:19.518 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start.
17-03-17 23:30:19.518 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start.
17-03-17 23:30:19.518 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC).
17-03-17 23:30:19.518 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start.
17-03-17 23:30:19.518 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) start.
17-03-17 23:30:19.518 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms.
17-03-17 23:30:19.518 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start.
17-03-17 23:30:19.518 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC).
17-03-17 23:30:19.518 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms.
17-03-17 23:30:19.518 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start.
17-03-17 23:30:19.528 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms.
17-03-17 23:30:19.528 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start.
17-03-17 23:30:19.528 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms.
17-03-17 23:30:19.528 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start.
17-03-17 23:30:19.538 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms.
17-03-17 23:30:19.538 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms.
17-03-17 23:30:19.538 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms.
17-03-17 23:30:19.538 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms.
17-03-17 23:30:19.548 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 476 476 229 229 27894 150\n [Camera]
17-03-17 23:30:19.748 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 192
17-03-17 23:30:19.848 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 3.997626,
17-03-17 23:30:20.218 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 668
17-03-17 23:30:20.218 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 668
17-03-17 23:30:20.218 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:30:20.228 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 668
17-03-17 23:30:20.228 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 668
17-03-17 23:30:20.228 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:30:20.228 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:30:20.228 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start.
17-03-17 23:30:20.228 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:30:20.228 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start.
17-03-17 23:30:20.418 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27894 861
17-03-17 23:30:20.568 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1011
17-03-17 23:30:20.608 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 375 ms.
17-03-17 23:30:20.608 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms.
17-03-17 23:30:20.608 -07 000000480 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:30:20.608 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 379 ms.
17-03-17 23:30:20.608 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 380 ms.
17-03-17 23:30:20.608 -07 000000541 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:30:20.608 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms.
17-03-17 23:30:20.618 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:30:20.618 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms.
17-03-17 23:30:20.628 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms.
17-03-17 23:30:20.798 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 1243
17-03-17 23:30:20.798 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 1243
17-03-17 23:30:20.798 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start.
17-03-17 23:30:20.798 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 1243
17-03-17 23:30:20.798 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 1243
17-03-17 23:30:20.798 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start.
17-03-17 23:30:20.808 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start.
17-03-17 23:30:20.808 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start.
17-03-17 23:30:20.808 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start.
17-03-17 23:30:20.808 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start.
17-03-17 23:30:20.988 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 1433
17-03-17 23:30:20.988 -07 000000480 INF: FPGA: Recv CAMDBLSNAP
17-03-17 23:30:20.988 -07 000000610 INF: FPGA: 'CAMDBLSNAP 476 476 229 229 27894 150' command took 2 ms to send, 1431 ms to get response, and 1439 ms overall
17-03-17 23:30:21.188 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 374 ms.
17-03-17 23:30:21.188 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 375 ms.
17-03-17 23:30:21.188 -07 000000448 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:30:21.188 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 378 ms.
17-03-17 23:30:21.188 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 379 ms.
17-03-17 23:30:21.188 -07 000000512 INF: Camera: CopyActivePixFullImage start.
17-03-17 23:30:21.188 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:30:21.188 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms.
17-03-17 23:30:21.188 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms.
17-03-17 23:30:21.188 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start.
17-03-17 23:30:21.198 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms.
17-03-17 23:30:21.238 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms.
17-03-17 23:30:21.238 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start.
17-03-17 23:30:21.278 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 41 ms.
17-03-17 23:30:21.288 -07 000000610 INF: Enabling Skipping AutoFocus in the next 0 cycles.
17-03-17 23:30:21.288 -07 000000610 INF: Imaging Cycle 76: ScanTilesCommand Cycle 76 time end. Duration was 142986 ms.
17-03-17 23:30:21.288 -07 000000610 INF: =================== Cycle #76 ===================
17-03-17 23:30:21.288 -07 000000610 INF: ===================  ===================
17-03-17 23:30:21.288 -07 000000576 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED]
17-03-17 23:30:21.298 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-17 23:30:21.298 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8320 mm, delta = 0.5485 mm
17-03-17 23:30:21.298 -07 000000512 INF: FPGA: Recv EXLED1ADCR 28
17-03-17 23:30:21.298 -07 000000576 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 1 ms to get response, and 4 ms overall
17-03-17 23:30:21.298 -07 000000576 INF: GreenLED: Using Green data: Photodiode ADC 28 --> 0.0 mW (old method), or 2.1 mW (new method). Difference = 2.1 mW
17-03-17 23:30:21.298 -07 000000576 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 3.997626, FrontChillerHeatSinkTemperature: 0.252148, AmbientTemperature: 18.68576, FlowCellCompartmentTemperature: 21.99255, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.50994, GreenLEDSensorTemperature: 25.55362, PhotodiodePowerAdcGreen: 28, PhotodiodePowerMwGreen: 2.10942
17-03-17 23:30:21.298 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:30:21.298 -07 000000502 INF: FPGA: Recv YRDPOS 153256
17-03-17 23:30:21.308 -07 000000610 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:21.308 -07 000000610 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:30:21.308 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False
17-03-17 23:30:21.308 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-17 23:30:21.308 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-17 23:30:21.418 -07 000000475 INF: FPGA: Recv YMVTO 154377 872
17-03-17 23:30:21.428 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 109 ms to get response, and 119 ms overall
17-03-17 23:30:21.428 -07 000000610 INF: Y Motor: Position error before settling = -2 encoder counts (-0.001 mm)
17-03-17 23:30:21.428 -07 000000610 INF: Y Motor: To move from 74.832 to 75.381 (0.549 mm) should take 877 steps, but required 872 steps (0.545 mm). Slippage = -0.003 mm (-0.01%).
17-03-17 23:30:21.428 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 119 ms, distance = 0.549 mm, average velocity = 4.610 mm/sec
17-03-17 23:30:22.078 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:30:22.078 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1215, R2=1270, Total=2485. Warn if over 250 bubbles per interval.
17-03-17 23:30:24.428 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:30:24.428 -07 000000512 INF: FPGA: Recv YRDPOS 154381
17-03-17 23:30:24.438 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:30:24.438 -07 000000610 INF: Y Motor: Encoder = 154381 = motor step 120610.2 = 75.3813 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:30:24.448 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.000768, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:30:24.448 -07 000000610 INF: Y Motor: Position error after settling = 2 encoder counts (0.001 mm), Delta during settling = 4 counts (0.002 mm)
17-03-17 23:30:24.448 -07 000000610 INF: Y Motor: Moved to 75.3813 after 3158 ms
17-03-17 23:30:24.458 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 23:30:24.458 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:30:24.478 -07 000000610 INF: ReagentValve: Recv 18\r
17-03-17 23:30:24.478 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions.
17-03-17 23:30:24.478 -07 000000610 INF: ReagentValve: Xmit +03\r
17-03-17 23:30:24.778 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 23:30:24.798 -07 000000610 INF: ReagentValve: Recv 0278\r
17-03-17 23:30:24.798 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%)
17-03-17 23:30:24.848 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:30:24.868 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 23:30:24.868 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 23:30:24.968 -07 000000610 INF: =================== Pumping Reagent PR2 (3) ===================
17-03-17 23:30:24.968 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 23:30:24.968 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:30:24.998 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 23:30:24.998 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 23:30:24.998 -07 000000610 INF: =================== Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 23:30:25.128 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 23:30:25.168 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:30:25.208 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 4.005817,
17-03-17 23:30:27.078 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 2
17-03-17 23:30:27.078 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=2, R2=0, Total=2. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1217, R2=1270, Total=2487. Warn if over 250 bubbles per interval.
17-03-17 23:30:28.298 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:30:28.328 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:30:28.748 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:30:28.778 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:30:29.198 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:30:29.228 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:30:29.228 -07 000000610 INF: LanePump: Waited 4060 ms for pump motion to complete
17-03-17 23:30:29.228 -07 000000610 INF: =================== Pumping Reagent PR2 (3) ===================
17-03-17 23:30:29.358 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:30:29.388 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 23:30:29.388 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 23:30:29.518 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:30:29.548 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 23:30:29.548 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 23:30:29.548 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 23:30:29.678 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 23:30:29.708 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:30:30.138 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:30:30.168 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:30:30.168 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 23:30:30.168 -07 000000610 INF: ===================  ===================
17-03-17 23:30:30.208 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-17 23:30:30.208 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 75.3813 mm, delta = -0.0008 mm
17-03-17 23:30:30.208 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:30:30.208 -07 000000561 INF: FPGA: Recv YRDPOS 154381
17-03-17 23:30:30.218 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall
17-03-17 23:30:30.218 -07 000000610 INF: Y Motor: Encoder = 154381 = motor step 120610.2 = 75.3813 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:30:30.218 -07 000000610 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = 0.0000 mm (0.0 steps). UsingTableMove = False
17-03-17 23:30:30.218 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-17 23:30:30.218 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-17 23:30:30.248 -07 000000627 INF: FPGA: Recv YMVTO 154381 1
17-03-17 23:30:30.248 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 29 ms to get response, and 38 ms overall
17-03-17 23:30:30.248 -07 000000610 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 23:30:30.258 -07 000000610 INF: Y Motor: To move from 75.381 to 75.381 (-0.001 mm) should take 2 steps, but required 1 steps (0.001 mm). Slippage = -0.001 mm (0.81%).
17-03-17 23:30:30.258 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 39 ms, distance = 0.001 mm, average velocity = 0.020 mm/sec
17-03-17 23:30:30.568 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 4.007176,
17-03-17 23:30:32.078 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 3 R1 1
17-03-17 23:30:32.078 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=1, R2=3, Total=4. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1218, R2=1273, Total=2491. Warn if over 250 bubbles per interval.
17-03-17 23:30:33.258 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:30:33.258 -07 000000561 INF: FPGA: Recv YRDPOS 154381
17-03-17 23:30:33.268 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:30:33.268 -07 000000610 INF: Y Motor: Encoder = 154381 = motor step 120610.2 = 75.3813 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:30:33.268 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.000768, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:30:33.268 -07 000000610 INF: Y Motor: Position error after settling = 2 encoder counts (0.001 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:30:33.268 -07 000000610 INF: Y Motor: Moved to 75.3813 after 3058 ms
17-03-17 23:30:33.268 -07 000000610 INF: =================== Flow Cell Temp 60° ===================
17-03-17 23:30:33.268 -07 000000610 INF: =================== Flow Cell Temp 60°, FC temperature to 60° ===================
17-03-17 23:30:33.268 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl]
17-03-17 23:30:33.278 -07 000000576 INF: FPGA: Recv TEC2TEMP 
17-03-17 23:30:33.278 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 3 ms overall
17-03-17 23:30:33.278 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 23:30:33.278 -07 000000623 INF: FPGA: Recv TEC2EN 
17-03-17 23:30:33.288 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:30:33.288 -07 000000610 INF: =================== Flow Cell Temp 60° ===================
17-03-17 23:30:33.288 -07 000000610 INF: ===================  ===================
17-03-17 23:30:33.288 -07 000000610 INF: =================== Pumping Reagent PR2 (3) ===================
17-03-17 23:30:33.288 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 23:30:33.298 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:30:33.328 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n
17-03-17 23:30:33.328 -07 000000610 INF: LanePump: Current Position of Pump is: 720
17-03-17 23:30:33.328 -07 000000610 INF: =================== Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 23:30:33.458 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 23:30:33.498 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:30:35.928 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 3.971733,
17-03-17 23:30:36.628 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:30:36.658 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:30:37.078 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:30:37.078 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 7 R1 9
17-03-17 23:30:37.078 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=9, R2=7, Total=16. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1227, R2=1280, Total=2507. Warn if over 250 bubbles per interval.
17-03-17 23:30:37.108 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:30:37.528 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:30:37.558 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:30:37.558 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 23:30:37.558 -07 000000610 INF: =================== Pumping Reagent PR2 (3) ===================
17-03-17 23:30:37.688 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:30:37.718 -07 000000610 INF: LanePump: Recv /0`1440(0x03)\r\n
17-03-17 23:30:37.718 -07 000000610 INF: LanePump: Current Position of Pump is: 1440
17-03-17 23:30:37.848 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:30:37.878 -07 000000610 INF: LanePump: Recv /0`1440(0x03)\r\n
17-03-17 23:30:37.878 -07 000000610 INF: LanePump: Current Position of Pump is: 1440
17-03-17 23:30:37.878 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 23:30:38.008 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 23:30:38.038 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:30:38.468 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:30:38.498 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:30:38.498 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 23:30:38.498 -07 000000610 INF: ===================  ===================
17-03-17 23:30:39.718 -07 000000610 INF: AsyncDelayTimer waited 1214ms
17-03-17 23:30:39.718 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start
17-03-17 23:30:39.718 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:30:39.738 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 23:30:39.738 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions.
17-03-17 23:30:39.738 -07 000000610 INF: ReagentValve: Xmit +04\r
17-03-17 23:30:39.878 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 23:30:39.898 -07 000000610 INF: ReagentValve: Recv 00CD\r
17-03-17 23:30:39.898 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%)
17-03-17 23:30:39.948 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:30:39.968 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 23:30:39.968 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 23:30:40.068 -07 000000610 INF: =================== Pumping Reagent CMS (4) ===================
17-03-17 23:30:40.068 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1
17-03-17 23:30:40.068 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:30:40.098 -07 000000610 INF: LanePump: Recv /0`1440(0x03)\r\n
17-03-17 23:30:40.098 -07 000000610 INF: LanePump: Current Position of Pump is: 1440
17-03-17 23:30:40.098 -07 000000610 INF: =================== Pumping Reagent CMS (4), Aspirating port InputPort ===================
17-03-17 23:30:40.228 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r
17-03-17 23:30:40.268 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:30:41.288 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 3.983999,
17-03-17 23:30:41.708 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:30:41.738 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:30:42.078 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:30:42.078 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1227, R2=1280, Total=2507. Warn if over 250 bubbles per interval.
17-03-17 23:30:42.158 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:30:42.188 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:30:42.188 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete
17-03-17 23:30:42.188 -07 000000610 INF: =================== Pumping Reagent CMS (4) ===================
17-03-17 23:30:42.318 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:30:42.348 -07 000000610 INF: LanePump: Recv /0`1710(0x03)\r\n
17-03-17 23:30:42.348 -07 000000610 INF: LanePump: Current Position of Pump is: 1710
17-03-17 23:30:42.478 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:30:42.508 -07 000000610 INF: LanePump: Recv /0`1710(0x03)\r\n
17-03-17 23:30:42.508 -07 000000610 INF: LanePump: Current Position of Pump is: 1710
17-03-17 23:30:42.508 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 23:30:42.638 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 23:30:42.668 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:30:43.098 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:30:43.128 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:30:43.128 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 23:30:43.128 -07 000000610 INF: ===================  ===================
17-03-17 23:30:44.348 -07 000000610 INF: AsyncDelayTimer waited 1219ms
17-03-17 23:30:44.348 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 23:30:44.348 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:30:44.368 -07 000000610 INF: ReagentValve: Recv 04\r
17-03-17 23:30:44.368 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions.
17-03-17 23:30:44.368 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-17 23:30:44.518 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 23:30:44.538 -07 000000610 INF: ReagentValve: Recv 00E1\r
17-03-17 23:30:44.538 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%)
17-03-17 23:30:44.588 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:30:44.608 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 23:30:44.608 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 23:30:44.708 -07 000000610 INF: =================== Pumping Reagent PR2 (3) ===================
17-03-17 23:30:44.708 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1
17-03-17 23:30:44.708 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:30:44.738 -07 000000610 INF: LanePump: Recv /0`1710(0x03)\r\n
17-03-17 23:30:44.738 -07 000000610 INF: LanePump: Current Position of Pump is: 1710
17-03-17 23:30:44.738 -07 000000610 INF: =================== Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 23:30:44.868 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r
17-03-17 23:30:44.908 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:30:45.778 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:30:45.808 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:30:45.808 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete
17-03-17 23:30:45.808 -07 000000610 INF: =================== Pumping Reagent PR2 (3) ===================
17-03-17 23:30:45.938 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:30:45.968 -07 000000610 INF: LanePump: Recv /0`1830(0x03)\r\n
17-03-17 23:30:45.968 -07 000000610 INF: LanePump: Current Position of Pump is: 1830
17-03-17 23:30:46.098 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:30:46.128 -07 000000610 INF: LanePump: Recv /0`1830(0x03)\r\n
17-03-17 23:30:46.128 -07 000000610 INF: LanePump: Current Position of Pump is: 1830
17-03-17 23:30:46.128 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 23:30:46.258 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 23:30:46.288 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:30:46.648 -07 000000409 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 3.983999,
17-03-17 23:30:46.718 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:30:46.748 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:30:46.748 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 23:30:46.748 -07 000000610 INF: ===================  ===================
17-03-17 23:30:46.748 -07 000000438 INF: WaitCommand(10000) start
17-03-17 23:30:46.748 -07 000000502 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 23:30:46.748 -07 000000502 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort ===================
17-03-17 23:30:47.078 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:30:47.078 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1227, R2=1280, Total=2507. Warn if over 250 bubbles per interval.
17-03-17 23:30:47.968 -07 000000502 INF: AsyncDelayTimer waited 1214ms
17-03-17 23:30:47.968 -07 000000502 INF: LanePump: Xmit /1?\r
17-03-17 23:30:47.998 -07 000000502 INF: LanePump: Recv /0`1830(0x03)\r\n
17-03-17 23:30:47.998 -07 000000502 INF: LanePump: Current Position of Pump is: 1830
17-03-17 23:30:48.128 -07 000000502 INF: LanePump: Xmit /1V1500OA0R\r
17-03-17 23:30:48.168 -07 000000502 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:30:50.418 -07 000000502 INF: LanePump: Xmit /1Q\r
17-03-17 23:30:50.448 -07 000000502 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:30:50.868 -07 000000502 INF: LanePump: Xmit /1Q\r
17-03-17 23:30:50.898 -07 000000502 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:30:50.898 -07 000000502 INF: LanePump: Waited 2729 ms for pump motion to complete
17-03-17 23:30:50.898 -07 000000502 INF: =================== Dispense to DispenseAndWait ===================
17-03-17 23:30:50.898 -07 000000502 INF: ===================  ===================
17-03-17 23:30:52.008 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 4.004458,
17-03-17 23:30:52.078 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:30:52.078 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1227, R2=1280, Total=2507. Warn if over 250 bubbles per interval.
17-03-17 23:30:56.758 -07 000000438 INF: WaitCommand(10000) end
17-03-17 23:30:56.758 -07 000000610 INF: =================== Pumping Reagent PR2 (3) ===================
17-03-17 23:30:56.758 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1
17-03-17 23:30:56.758 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:30:56.788 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n
17-03-17 23:30:56.788 -07 000000610 INF: LanePump: Current Position of Pump is: 0
17-03-17 23:30:56.788 -07 000000610 INF: =================== Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 23:30:56.918 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r
17-03-17 23:30:56.958 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:30:57.078 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:30:57.078 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1227, R2=1280, Total=2507. Warn if over 250 bubbles per interval.
17-03-17 23:30:57.368 -07 000000409 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 3.979922,
17-03-17 23:31:02.078 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:31:02.078 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1227, R2=1280, Total=2507. Warn if over 250 bubbles per interval.
17-03-17 23:31:02.728 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 3.986717,
17-03-17 23:31:03.088 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:31:03.118 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:31:03.538 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:31:03.568 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:31:03.988 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:31:04.018 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:31:04.438 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:31:04.468 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:31:04.888 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:31:04.918 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:31:04.918 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete
17-03-17 23:31:04.918 -07 000000610 INF: =================== Pumping Reagent PR2 (3) ===================
17-03-17 23:31:05.048 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:31:05.078 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 23:31:05.078 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 23:31:05.208 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:31:05.238 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 23:31:05.238 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 23:31:05.238 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 23:31:05.368 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 23:31:05.398 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:31:05.828 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:31:05.858 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:31:05.858 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 23:31:05.858 -07 000000610 INF: ===================  ===================
17-03-17 23:31:05.908 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True)
17-03-17 23:31:05.908 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 75.3813 mm, delta = -0.0008 mm
17-03-17 23:31:05.908 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:31:05.908 -07 000000480 INF: FPGA: Recv YRDPOS 154381
17-03-17 23:31:05.918 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall
17-03-17 23:31:05.918 -07 000000610 INF: Y Motor: Encoder = 154381 = motor step 120610.2 = 75.3813 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:31:05.918 -07 000000610 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = 0.0000 mm (0.0 steps). UsingTableMove = False
17-03-17 23:31:05.918 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts
17-03-17 23:31:05.918 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor]
17-03-17 23:31:05.948 -07 000000438 INF: FPGA: Recv YMVTO 154381 1
17-03-17 23:31:05.948 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 25 ms to get response, and 34 ms overall
17-03-17 23:31:05.948 -07 000000610 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm)
17-03-17 23:31:05.948 -07 000000610 INF: Y Motor: To move from 75.381 to 75.381 (-0.001 mm) should take 2 steps, but required 1 steps (0.001 mm). Slippage = -0.001 mm (0.81%).
17-03-17 23:31:05.948 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 34 ms, distance = 0.001 mm, average velocity = 0.023 mm/sec
17-03-17 23:31:07.078 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 2 R1 2
17-03-17 23:31:07.078 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=2, R2=2, Total=4. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1229, R2=1282, Total=2511. Warn if over 250 bubbles per interval.
17-03-17 23:31:08.088 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 3.985358,
17-03-17 23:31:08.948 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor]
17-03-17 23:31:08.948 -07 000000627 INF: FPGA: Recv YRDPOS 154381
17-03-17 23:31:08.958 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall
17-03-17 23:31:08.958 -07 000000610 INF: Y Motor: Encoder = 154381 = motor step 120610.2 = 75.3813 mm (step is ~0.63 um, encoder count is ~0.49 um)
17-03-17 23:31:08.958 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.000768, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm
17-03-17 23:31:08.958 -07 000000610 INF: Y Motor: Position error after settling = 2 encoder counts (0.001 mm), Delta during settling = 0 counts (0.000 mm)
17-03-17 23:31:08.958 -07 000000610 INF: Y Motor: Moved to 75.3813 after 3045 ms
17-03-17 23:31:08.968 -07 000000610 INF: =================== Flow Cell Temp 20° ===================
17-03-17 23:31:08.968 -07 000000610 INF: =================== Flow Cell Temp 20°, FC temperature to 20° ===================
17-03-17 23:31:08.968 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 20000000\n [FlowCellTempControl]
17-03-17 23:31:08.968 -07 000000502 INF: FPGA: Recv TEC2TEMP 
17-03-17 23:31:08.978 -07 000000610 INF: FPGA: 'TEC2TEMP 0 20000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:31:08.978 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 23:31:08.978 -07 000000561 INF: FPGA: Recv TEC2EN 
17-03-17 23:31:08.988 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:31:08.988 -07 000000610 INF: =================== Flow Cell Temp 20° ===================
17-03-17 23:31:08.988 -07 000000610 INF: WaitCommand(25000) start
17-03-17 23:31:12.078 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:31:12.078 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1229, R2=1282, Total=2511. Warn if over 250 bubbles per interval.
17-03-17 23:31:13.448 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 3.997626,
17-03-17 23:31:17.078 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:31:17.078 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1229, R2=1282, Total=2511. Warn if over 250 bubbles per interval.
17-03-17 23:31:18.808 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 4.004458,
17-03-17 23:31:22.078 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:31:22.078 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1229, R2=1282, Total=2511. Warn if over 250 bubbles per interval.
17-03-17 23:31:24.168 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 4.011254,
17-03-17 23:31:27.078 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:31:27.078 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1229, R2=1282, Total=2511. Warn if over 250 bubbles per interval.
17-03-17 23:31:29.528 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 4.02213,
17-03-17 23:31:32.078 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:31:32.078 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1229, R2=1282, Total=2511. Warn if over 250 bubbles per interval.
17-03-17 23:31:33.998 -07 000000610 INF: WaitCommand(25000) end
17-03-17 23:31:33.998 -07 000000610 INF: ===================  ===================
17-03-17 23:31:33.998 -07 000000610 INF: AsyncDelayTimer did not wait because wait time had elapsed
17-03-17 23:31:33.998 -07 000000610 INF: ReagentValve: Go to position 8 - PumpToFlowcell start
17-03-17 23:31:33.998 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:31:34.028 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 23:31:34.028 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 8. Moving 5 positions.
17-03-17 23:31:34.028 -07 000000610 INF: ReagentValve: Xmit +08\r
17-03-17 23:31:34.488 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 23:31:34.508 -07 000000610 INF: ReagentValve: Recv 0413\r
17-03-17 23:31:34.508 -07 000000610 INF: ReagentValve: Move+ from 3 to 8 took 1043 steps, expected 1021. Error = 22 steps (2.2%)
17-03-17 23:31:34.558 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:31:34.578 -07 000000610 INF: ReagentValve: Recv 08\r
17-03-17 23:31:34.578 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 23:31:34.678 -07 000000610 INF: =================== Pumping Reagent LDR (8) ===================
17-03-17 23:31:34.678 -07 000000610 INF: LanePump: Pumping from 8, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 75 µL, calling command Pumping to Flow Cell #1
17-03-17 23:31:34.678 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:31:34.708 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n
17-03-17 23:31:34.708 -07 000000610 INF: LanePump: Current Position of Pump is: 1500
17-03-17 23:31:34.708 -07 000000610 INF: =================== Pumping Reagent LDR (8), Aspirating port InputPort ===================
17-03-17 23:31:34.838 -07 000000610 INF: LanePump: Xmit /1V50IP450R\r
17-03-17 23:31:34.878 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:31:34.888 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 4.02213,
17-03-17 23:31:37.078 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:31:37.078 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1229, R2=1282, Total=2511. Warn if over 250 bubbles per interval.
17-03-17 23:31:40.248 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 4.019446,
17-03-17 23:31:42.078 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:31:42.078 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1229, R2=1282, Total=2511. Warn if over 250 bubbles per interval.
17-03-17 23:31:45.608 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 4.020806,
17-03-17 23:31:47.078 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:31:47.078 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1229, R2=1282, Total=2511. Warn if over 250 bubbles per interval.
17-03-17 23:31:50.968 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 3.997626,
17-03-17 23:31:51.298 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:31:51.328 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:31:51.748 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:31:51.778 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:31:52.078 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:31:52.078 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1229, R2=1282, Total=2511. Warn if over 250 bubbles per interval.
17-03-17 23:31:52.198 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:31:52.228 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:31:52.648 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:31:52.678 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:31:53.098 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:31:53.128 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:31:53.548 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:31:53.578 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:31:53.998 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:31:54.028 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:31:54.028 -07 000000610 INF: LanePump: Waited 19149 ms for pump motion to complete
17-03-17 23:31:54.028 -07 000000610 INF: =================== Pumping Reagent LDR (8) ===================
17-03-17 23:31:54.158 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:31:54.188 -07 000000610 INF: LanePump: Recv /0`1950(0x03)\r\n
17-03-17 23:31:54.188 -07 000000610 INF: LanePump: Current Position of Pump is: 1950
17-03-17 23:31:54.318 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:31:54.348 -07 000000610 INF: LanePump: Recv /0`1950(0x03)\r\n
17-03-17 23:31:54.348 -07 000000610 INF: LanePump: Current Position of Pump is: 1950
17-03-17 23:31:54.348 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 23:31:54.478 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 23:31:54.508 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:31:54.938 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:31:54.968 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:31:54.968 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 23:31:54.968 -07 000000610 INF: ===================  ===================
17-03-17 23:31:54.968 -07 000000610 INF: =================== Flow Cell Temp 65° ===================
17-03-17 23:31:54.968 -07 000000610 INF: =================== Flow Cell Temp 65°, FC temperature to 65° ===================
17-03-17 23:31:54.968 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl]
17-03-17 23:31:54.968 -07 000000482 INF: FPGA: Recv TEC2TEMP 
17-03-17 23:31:54.978 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall
17-03-17 23:31:54.978 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 23:31:54.978 -07 000000561 INF: FPGA: Recv TEC2EN 
17-03-17 23:31:54.988 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:31:54.988 -07 000000610 INF: =================== Flow Cell Temp 65° ===================
17-03-17 23:31:54.988 -07 000000610 INF: WaitCommand(60000) start
17-03-17 23:31:56.328 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 3.986717,
17-03-17 23:31:57.078 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:31:57.078 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1229, R2=1282, Total=2511. Warn if over 250 bubbles per interval.
17-03-17 23:32:01.688 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 3.989471,
17-03-17 23:32:02.078 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:32:02.078 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1229, R2=1282, Total=2511. Warn if over 250 bubbles per interval.
17-03-17 23:32:07.048 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 3.962185,
17-03-17 23:32:07.078 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:32:07.078 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1229, R2=1282, Total=2511. Warn if over 250 bubbles per interval.
17-03-17 23:32:12.078 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:32:12.078 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1229, R2=1282, Total=2511. Warn if over 250 bubbles per interval.
17-03-17 23:32:12.408 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 3.989471,
17-03-17 23:32:17.078 -07 000000409 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:32:17.078 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1229, R2=1282, Total=2511. Warn if over 250 bubbles per interval.
17-03-17 23:32:17.768 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 3.969015,
17-03-17 23:32:22.078 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:32:22.078 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1229, R2=1282, Total=2511. Warn if over 250 bubbles per interval.
17-03-17 23:32:23.128 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 3.990831,
17-03-17 23:32:27.078 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:32:27.078 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1229, R2=1282, Total=2511. Warn if over 250 bubbles per interval.
17-03-17 23:32:28.488 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 4.014009,
17-03-17 23:32:32.078 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:32:32.078 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1229, R2=1282, Total=2511. Warn if over 250 bubbles per interval.
17-03-17 23:32:33.848 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 4.020806,
17-03-17 23:32:37.078 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:32:37.078 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1229, R2=1282, Total=2511. Warn if over 250 bubbles per interval.
17-03-17 23:32:39.208 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 4.019446,
17-03-17 23:32:42.078 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:32:42.078 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1229, R2=1282, Total=2511. Warn if over 250 bubbles per interval.
17-03-17 23:32:44.568 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 4.008536,
17-03-17 23:32:47.078 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:32:47.078 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1229, R2=1282, Total=2511. Warn if over 250 bubbles per interval.
17-03-17 23:32:49.928 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 4.003063,
17-03-17 23:32:52.078 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:32:52.078 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1229, R2=1282, Total=2511. Warn if over 250 bubbles per interval.
17-03-17 23:32:54.998 -07 000000610 INF: WaitCommand(60000) end
17-03-17 23:32:54.998 -07 000000610 INF: ===================  ===================
17-03-17 23:32:54.998 -07 000000610 INF: AsyncDelayTimer did not wait because wait time had elapsed
17-03-17 23:32:54.998 -07 000000610 INF: ReagentValve: Go to position 13 - PumpToFlowcell start
17-03-17 23:32:54.998 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:32:55.018 -07 000000610 INF: ReagentValve: Recv 08\r
17-03-17 23:32:55.018 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 8 to 13. Moving 5 positions.
17-03-17 23:32:55.018 -07 000000610 INF: ReagentValve: Xmit +0D\r
17-03-17 23:32:55.288 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 4.033041,
17-03-17 23:32:55.458 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 23:32:55.478 -07 000000610 INF: ReagentValve: Recv 03FB\r
17-03-17 23:32:55.478 -07 000000610 INF: ReagentValve: Move+ from 8 to 13 took 1019 steps, expected 1021. Error = -2 steps (-0.2%)
17-03-17 23:32:55.528 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:32:55.548 -07 000000610 INF: ReagentValve: Recv 0D\r
17-03-17 23:32:55.548 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 23:32:55.648 -07 000000610 INF: =================== Pumping Reagent HP12 (13) ===================
17-03-17 23:32:55.648 -07 000000610 INF: LanePump: Pumping from 13, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 300 µL, calling command Pumping to Flow Cell #1
17-03-17 23:32:55.648 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:32:55.678 -07 000000610 INF: LanePump: Recv /0`1950(0x03)\r\n
17-03-17 23:32:55.678 -07 000000610 INF: LanePump: Current Position of Pump is: 1950
17-03-17 23:32:55.808 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:32:55.838 -07 000000610 INF: LanePump: Recv /0`1950(0x03)\r\n
17-03-17 23:32:55.838 -07 000000610 INF: LanePump: Current Position of Pump is: 1950
17-03-17 23:32:57.078 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:32:57.078 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1229, R2=1282, Total=2511. Warn if over 250 bubbles per interval.
17-03-17 23:33:00.008 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:33:00.038 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:33:00.038 -07 000000610 INF: LanePump: Waited 4199 ms for pump motion to complete
17-03-17 23:33:00.168 -07 000000610 INF: LanePump: Xmit /1OR\r
17-03-17 23:33:00.198 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:33:00.628 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:33:00.648 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 4.018051,
17-03-17 23:33:00.658 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:33:00.658 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 23:33:00.788 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:33:00.818 -07 000000610 INF: LanePump: Recv /0`1950(0x03)\r\n
17-03-17 23:33:00.818 -07 000000610 INF: LanePump: Current Position of Pump is: 1950
17-03-17 23:33:00.948 -07 000000610 INF: LanePump: Xmit /1V500A0R\r
17-03-17 23:33:00.978 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:33:02.078 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:33:02.078 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1229, R2=1282, Total=2511. Warn if over 250 bubbles per interval.
17-03-17 23:33:06.008 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 4.020806,
17-03-17 23:33:07.078 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:33:07.078 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1229, R2=1282, Total=2511. Warn if over 250 bubbles per interval.
17-03-17 23:33:07.248 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:33:07.278 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:33:07.698 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:33:07.728 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:33:08.148 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:33:08.178 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:33:08.598 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:33:08.628 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:33:09.048 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:33:09.078 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:33:09.078 -07 000000610 INF: LanePump: Waited 8099 ms for pump motion to complete
17-03-17 23:33:09.078 -07 000000610 INF: =================== Pumping Reagent HP12 (13), Aspirating port InputPort ===================
17-03-17 23:33:09.208 -07 000000610 INF: LanePump: Xmit /1V400IP1800R\r
17-03-17 23:33:09.248 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:33:11.368 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 3.996267,
17-03-17 23:33:12.078 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 4 R1 5
17-03-17 23:33:12.078 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=5, R2=4, Total=9. Max bubbles per interval: R1=19, R2=17, Total=36. Bubbles this run: R1=1234, R2=1286, Total=2520. Warn if over 250 bubbles per interval.
17-03-17 23:33:16.668 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:33:16.698 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:33:16.728 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 3.990831,
17-03-17 23:33:17.078 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 22 R1 25
17-03-17 23:33:17.078 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=25, R2=22, Total=47. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1259, R2=1308, Total=2567. Warn if over 250 bubbles per interval.
17-03-17 23:33:17.118 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:33:17.148 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:33:17.568 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:33:17.598 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:33:18.018 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:33:18.048 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:33:18.468 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:33:18.498 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:33:18.918 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:33:18.948 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:33:18.948 -07 000000610 INF: LanePump: Waited 9699 ms for pump motion to complete
17-03-17 23:33:18.948 -07 000000610 INF: =================== Pumping Reagent HP12 (13) ===================
17-03-17 23:33:19.078 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:33:19.108 -07 000000610 INF: LanePump: Recv /0`1800(0x03)\r\n
17-03-17 23:33:19.108 -07 000000610 INF: LanePump: Current Position of Pump is: 1800
17-03-17 23:33:19.238 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:33:19.268 -07 000000610 INF: LanePump: Recv /0`1800(0x03)\r\n
17-03-17 23:33:19.268 -07 000000610 INF: LanePump: Current Position of Pump is: 1800
17-03-17 23:33:19.268 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 23:33:19.398 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 23:33:19.428 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:33:19.858 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:33:19.888 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:33:19.888 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 23:33:19.888 -07 000000610 INF: ===================  ===================
17-03-17 23:33:19.888 -07 000000610 INF: =================== Pumping Reagent HP12 (13) ===================
17-03-17 23:33:19.888 -07 000000610 INF: LanePump: Pumping from 13, aspirate port InputPort, aspiration rate 250 µL/min, dispense rate 7500 µL/min, volume 75 µL, calling command Pumping to Flow Cell #1
17-03-17 23:33:20.018 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:33:20.048 -07 000000610 INF: LanePump: Recv /0`1800(0x03)\r\n
17-03-17 23:33:20.048 -07 000000610 INF: LanePump: Current Position of Pump is: 1800
17-03-17 23:33:20.048 -07 000000610 INF: =================== Pumping Reagent HP12 (13), Aspirating port InputPort ===================
17-03-17 23:33:20.178 -07 000000610 INF: LanePump: Xmit /1V50IP450R\r
17-03-17 23:33:20.218 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:33:22.078 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 10 R1 9
17-03-17 23:33:22.078 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=9, R2=10, Total=19. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1318, Total=2586. Warn if over 250 bubbles per interval.
17-03-17 23:33:22.088 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 3.979922,
17-03-17 23:33:27.078 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 0
17-03-17 23:33:27.078 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=1, Total=1. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval.
17-03-17 23:33:27.448 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 3.974486,
17-03-17 23:33:32.078 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:33:32.078 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval.
17-03-17 23:33:32.808 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 3.981281,
17-03-17 23:33:36.638 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:33:36.668 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:33:37.078 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:33:37.078 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval.
17-03-17 23:33:37.088 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:33:37.118 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:33:37.538 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:33:37.568 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:33:37.988 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:33:38.018 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:33:38.168 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 3.986717,
17-03-17 23:33:38.438 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:33:38.468 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:33:38.888 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:33:38.918 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:33:39.338 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:33:39.368 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:33:39.368 -07 000000610 INF: LanePump: Waited 19149 ms for pump motion to complete
17-03-17 23:33:39.368 -07 000000610 INF: =================== Pumping Reagent HP12 (13) ===================
17-03-17 23:33:39.498 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:33:39.528 -07 000000610 INF: LanePump: Recv /0`2250(0x03)\r\n
17-03-17 23:33:39.528 -07 000000610 INF: LanePump: Current Position of Pump is: 2250
17-03-17 23:33:39.658 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:33:39.688 -07 000000610 INF: LanePump: Recv /0`2250(0x03)\r\n
17-03-17 23:33:39.688 -07 000000610 INF: LanePump: Current Position of Pump is: 2250
17-03-17 23:33:39.688 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 23:33:39.818 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 23:33:39.848 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:33:40.278 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:33:40.308 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:33:40.308 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete
17-03-17 23:33:40.308 -07 000000610 INF: ===================  ===================
17-03-17 23:33:40.308 -07 000000610 INF: =================== Flow Cell Temp 40° ===================
17-03-17 23:33:40.308 -07 000000610 INF: =================== Flow Cell Temp 40°, FC temperature to 40° ===================
17-03-17 23:33:40.308 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 40000000\n [FlowCellTempControl]
17-03-17 23:33:40.308 -07 000000502 INF: FPGA: Recv TEC2TEMP 
17-03-17 23:33:40.318 -07 000000610 INF: FPGA: 'TEC2TEMP 0 40000000' command took 1 ms to send, 0 ms to get response, and 5 ms overall
17-03-17 23:33:40.318 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl]
17-03-17 23:33:40.318 -07 000000409 INF: FPGA: Recv TEC2EN 
17-03-17 23:33:40.328 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall
17-03-17 23:33:40.328 -07 000000610 INF: =================== Flow Cell Temp 40° ===================
17-03-17 23:33:40.328 -07 000000610 INF: WaitCommand(60000) start
17-03-17 23:33:42.078 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:33:42.078 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval.
17-03-17 23:33:43.528 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 4.028963,
17-03-17 23:33:47.078 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:33:47.078 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval.
17-03-17 23:33:48.888 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 4.014009,
17-03-17 23:33:52.078 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:33:52.078 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval.
17-03-17 23:33:54.248 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 3.990831,
17-03-17 23:33:57.078 -07 000000409 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:33:57.078 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval.
17-03-17 23:33:59.608 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 3.956714,
17-03-17 23:34:02.078 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:34:02.078 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval.
17-03-17 23:34:04.968 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 3.98264,
17-03-17 23:34:07.078 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:34:07.078 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval.
17-03-17 23:34:10.328 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 3.996267,
17-03-17 23:34:12.078 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:34:12.078 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval.
17-03-17 23:34:15.688 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 3.996267,
17-03-17 23:34:17.078 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:34:17.078 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval.
17-03-17 23:34:21.048 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 4.015368,
17-03-17 23:34:22.078 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:34:22.078 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval.
17-03-17 23:34:26.408 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 4.018051,
17-03-17 23:34:27.078 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:34:27.078 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval.
17-03-17 23:34:31.768 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 4.018051,
17-03-17 23:34:32.078 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:34:32.078 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval.
17-03-17 23:34:37.078 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:34:37.078 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval.
17-03-17 23:34:37.128 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 3.996267,
17-03-17 23:34:40.338 -07 000000610 INF: WaitCommand(60000) end
17-03-17 23:34:40.338 -07 000000610 INF: ===================  ===================
17-03-17 23:34:40.338 -07 000000610 INF: AsyncDelayTimer did not wait because wait time had elapsed
17-03-17 23:34:40.338 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start
17-03-17 23:34:40.338 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:34:40.358 -07 000000610 INF: ReagentValve: Recv 0D\r
17-03-17 23:34:40.358 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 13 to 3. Moving 10 positions.
17-03-17 23:34:40.358 -07 000000610 INF: ReagentValve: Xmit -03\r
17-03-17 23:34:41.198 -07 000000610 INF: ReagentValve: Xmit B\r
17-03-17 23:34:41.218 -07 000000610 INF: ReagentValve: Recv 080E\r
17-03-17 23:34:41.218 -07 000000610 INF: ReagentValve: Move- from 13 to 3 took 2062 steps, expected 2042. Error = 20 steps (1.0%)
17-03-17 23:34:41.268 -07 000000610 INF: ReagentValve: Xmit S\r
17-03-17 23:34:41.288 -07 000000610 INF: ReagentValve: Recv 03\r
17-03-17 23:34:41.288 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating
17-03-17 23:34:41.388 -07 000000610 INF: =================== Pumping Reagent PR2 (3) ===================
17-03-17 23:34:41.388 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1
17-03-17 23:34:41.438 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:34:41.468 -07 000000610 INF: LanePump: Recv /0`2250(0x03)\r\n
17-03-17 23:34:41.468 -07 000000610 INF: LanePump: Current Position of Pump is: 2250
17-03-17 23:34:41.468 -07 000000610 INF: =================== Pumping Reagent PR2 (3), Aspirating port InputPort ===================
17-03-17 23:34:41.598 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r
17-03-17 23:34:41.638 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:34:42.088 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0
17-03-17 23:34:42.088 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval.
17-03-17 23:34:42.488 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 76, FrontChillerTemperature: 4.003063,
17-03-17 23:34:44.768 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:34:44.798 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:34:45.218 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:34:45.248 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n
17-03-17 23:34:45.668 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:34:45.698 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:34:45.698 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete
17-03-17 23:34:45.698 -07 000000610 INF: =================== Pumping Reagent PR2 (3) ===================
17-03-17 23:34:45.828 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:34:45.858 -07 000000610 INF: LanePump: Recv /0`2970(0x03)\r\n
17-03-17 23:34:45.858 -07 000000610 INF: LanePump: Current Position of Pump is: 2970
17-03-17 23:34:45.988 -07 000000610 INF: LanePump: Xmit /1?\r
17-03-17 23:34:46.018 -07 000000610 INF: LanePump: Recv /0`2970(0x03)\r\n
17-03-17 23:34:46.018 -07 000000610 INF: LanePump: Current Position of Pump is: 2970
17-03-17 23:34:46.018 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution
17-03-17 23:34:46.148 -07 000000610 INF: LanePump: Xmit /1IR\r
17-03-17 23:34:46.178 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:34:46.608 -07 000000610 INF: LanePump: Xmit /1Q\r
17-03-17 23:34:46.638 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n
17-03-17 23:34:46.638 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete
17-03-17 23:34:46.638 -07 000000610 INF: ===================  ===================
17-03-17 23:34:46.638 -07 000000610 INF: =================== FC temp control off ===================
17-03-17 23:34:46.638 -07 000000610 INF: FPGA: Xmit TEC2EN 0 0\n [FlowCellTempControl]
17-03-17 23:34:46.638 -07 000000409 INF: FPGA: Recv TEC2EN 
17-03-17 23:34:46.648 -07 000000610 INF: FPGA: 'TEC2EN 0 0' command took 0 ms to send, 0 ms to get response, and 7 ms overall
17-03-17 23:34:46.648 -07 000000610 INF: ===================  ===================
17-03-17 23:34:46.738 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.