17-03-17 23:34:46.788 -07 000000610 INF: =================== Cycle #77 =================== 17-03-17 23:34:46.788 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True) 17-03-17 23:34:46.788 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 75.3813 mm, delta = -0.0008 mm 17-03-17 23:34:46.788 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:34:46.798 -07 000000475 INF: FPGA: Recv YRDPOS 154380 17-03-17 23:34:46.798 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-17 23:34:46.798 -07 000000610 INF: Y Motor: Encoder = 154380 = motor step 120609.4 = 75.3809 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:34:46.798 -07 000000610 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = 0.0000 mm (0.0 steps). UsingTableMove = False 17-03-17 23:34:46.798 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts 17-03-17 23:34:46.798 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor] 17-03-17 23:34:46.828 -07 000000480 INF: FPGA: Recv YMVTO 154380 0 17-03-17 23:34:46.828 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 28 ms to get response, and 34 ms overall 17-03-17 23:34:46.828 -07 000000610 INF: Y Motor: Position error before settling = 1 encoder counts (0.000 mm) 17-03-17 23:34:46.828 -07 000000610 INF: Y Motor: To move from 75.381 to 75.381 (-0.001 mm) should take 1 steps, but required 0 steps (0.000 mm). Slippage = -0.001 mm (0.81%). 17-03-17 23:34:46.828 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 34 ms, distance = 0.001 mm, average velocity = 0.023 mm/sec 17-03-17 23:34:47.078 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:34:47.078 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:34:47.848 -07 000000409 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 4.003063, 17-03-17 23:34:49.828 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:34:49.828 -07 000000561 INF: FPGA: Recv YRDPOS 154380 17-03-17 23:34:49.838 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:34:49.838 -07 000000610 INF: Y Motor: Encoder = 154380 = motor step 120609.4 = 75.3809 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:34:49.838 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.000279, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 23:34:49.838 -07 000000610 INF: Y Motor: Position error after settling = 1 encoder counts (0.000 mm), Delta during settling = 0 counts (0.000 mm) 17-03-17 23:34:49.838 -07 000000610 INF: Y Motor: Moved to 75.3809 after 3042 ms 17-03-17 23:34:49.838 -07 000000610 INF: =================== Cycle #77, Flow Cell Temp 60° =================== 17-03-17 23:34:49.838 -07 000000610 INF: =================== Cycle #77, Flow Cell Temp 60°, FC temperature to 60° =================== 17-03-17 23:34:49.838 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl] 17-03-17 23:34:49.858 -07 000000486 INF: FPGA: Recv TEC2TEMP 17-03-17 23:34:49.858 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 19 ms overall 17-03-17 23:34:49.858 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl] 17-03-17 23:34:49.858 -07 000000438 INF: FPGA: Recv TEC2EN 17-03-17 23:34:49.868 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-17 23:34:49.868 -07 000000610 INF: =================== Cycle #77, Flow Cell Temp 60° =================== 17-03-17 23:34:49.868 -07 000000610 INF: =================== Cycle #77 =================== 17-03-17 23:34:49.868 -07 000000610 INF: =================== Cycle #77, Pumping Reagent PR2 (3) =================== 17-03-17 23:34:49.868 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1 17-03-17 23:34:49.868 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-17 23:34:49.908 -07 000000610 INF: LanePump: Recv /0`2970(0x03)\r\n 17-03-17 23:34:49.908 -07 000000610 INF: LanePump: Current Position of Pump is: 2970 17-03-17 23:34:50.038 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-17 23:34:50.068 -07 000000610 INF: LanePump: Recv /0`2970(0x03)\r\n 17-03-17 23:34:50.068 -07 000000610 INF: LanePump: Current Position of Pump is: 2970 17-03-17 23:34:52.078 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:34:52.078 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:34:53.208 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 3.971733, 17-03-17 23:34:54.238 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-17 23:34:54.268 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 23:34:54.268 -07 000000610 INF: LanePump: Waited 4199 ms for pump motion to complete 17-03-17 23:34:54.398 -07 000000610 INF: LanePump: Xmit /1OR\r 17-03-17 23:34:54.428 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-17 23:34:54.858 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-17 23:34:54.888 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 23:34:54.888 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete 17-03-17 23:34:55.018 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-17 23:34:55.048 -07 000000610 INF: LanePump: Recv /0`2970(0x03)\r\n 17-03-17 23:34:55.048 -07 000000610 INF: LanePump: Current Position of Pump is: 2970 17-03-17 23:34:55.178 -07 000000610 INF: LanePump: Xmit /1V500A0R\r 17-03-17 23:34:55.218 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-17 23:34:57.078 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:34:57.078 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:34:58.568 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 4.000345, 17-03-17 23:35:02.078 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:35:02.078 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:35:03.928 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 3.985358, 17-03-17 23:35:05.518 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-17 23:35:05.548 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-17 23:35:05.968 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-17 23:35:05.998 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-17 23:35:06.418 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-17 23:35:06.448 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-17 23:35:06.868 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-17 23:35:06.898 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-17 23:35:07.078 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:35:07.078 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:35:07.318 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-17 23:35:07.348 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 23:35:07.348 -07 000000610 INF: LanePump: Waited 12129 ms for pump motion to complete 17-03-17 23:35:07.348 -07 000000610 INF: =================== Cycle #77, Pumping Reagent PR2 (3), Aspirating port InputPort =================== 17-03-17 23:35:07.478 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r 17-03-17 23:35:07.518 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-17 23:35:09.288 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 3.978563, 17-03-17 23:35:10.648 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-17 23:35:10.678 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-17 23:35:11.098 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-17 23:35:11.128 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-17 23:35:11.548 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-17 23:35:11.578 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 23:35:11.578 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete 17-03-17 23:35:11.578 -07 000000610 INF: =================== Cycle #77, Pumping Reagent PR2 (3) =================== 17-03-17 23:35:11.708 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-17 23:35:11.738 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n 17-03-17 23:35:11.738 -07 000000610 INF: LanePump: Current Position of Pump is: 720 17-03-17 23:35:11.868 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-17 23:35:11.898 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n 17-03-17 23:35:11.898 -07 000000610 INF: LanePump: Current Position of Pump is: 720 17-03-17 23:35:11.898 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution 17-03-17 23:35:12.028 -07 000000610 INF: LanePump: Xmit /1IR\r 17-03-17 23:35:12.058 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 23:35:12.078 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:35:12.078 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:35:12.488 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-17 23:35:12.518 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 23:35:12.518 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete 17-03-17 23:35:12.518 -07 000000610 INF: =================== Cycle #77 =================== 17-03-17 23:35:13.738 -07 000000610 INF: AsyncDelayTimer waited 1218ms 17-03-17 23:35:13.738 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start 17-03-17 23:35:13.738 -07 000000610 INF: ReagentValve: Xmit S\r 17-03-17 23:35:13.758 -07 000000610 INF: ReagentValve: Recv 03\r 17-03-17 23:35:13.758 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions. 17-03-17 23:35:13.758 -07 000000610 INF: ReagentValve: Xmit -01\r 17-03-17 23:35:13.968 -07 000000610 INF: ReagentValve: Xmit B\r 17-03-17 23:35:13.988 -07 000000610 INF: ReagentValve: Recv 0198\r 17-03-17 23:35:13.988 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%) 17-03-17 23:35:14.038 -07 000000610 INF: ReagentValve: Xmit S\r 17-03-17 23:35:14.058 -07 000000610 INF: ReagentValve: Recv 01\r 17-03-17 23:35:14.058 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating 17-03-17 23:35:14.158 -07 000000610 INF: =================== Cycle #77, Pumping Reagent IMT (1) =================== 17-03-17 23:35:14.158 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1 17-03-17 23:35:14.158 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-17 23:35:14.188 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n 17-03-17 23:35:14.188 -07 000000610 INF: LanePump: Current Position of Pump is: 720 17-03-17 23:35:14.188 -07 000000610 INF: =================== Cycle #77, Pumping Reagent IMT (1), Aspirating port InputPort =================== 17-03-17 23:35:14.318 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r 17-03-17 23:35:14.358 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-17 23:35:14.648 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 3.997626, 17-03-17 23:35:15.798 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-17 23:35:15.828 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-17 23:35:16.248 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-17 23:35:16.278 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 23:35:16.278 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete 17-03-17 23:35:16.278 -07 000000610 INF: =================== Cycle #77, Pumping Reagent IMT (1) =================== 17-03-17 23:35:16.408 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-17 23:35:16.438 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n 17-03-17 23:35:16.438 -07 000000610 INF: LanePump: Current Position of Pump is: 990 17-03-17 23:35:16.568 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-17 23:35:16.598 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n 17-03-17 23:35:16.598 -07 000000610 INF: LanePump: Current Position of Pump is: 990 17-03-17 23:35:16.598 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution 17-03-17 23:35:16.728 -07 000000610 INF: LanePump: Xmit /1IR\r 17-03-17 23:35:16.758 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 23:35:17.078 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:35:17.078 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:35:17.188 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-17 23:35:17.218 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 23:35:17.218 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete 17-03-17 23:35:17.218 -07 000000610 INF: =================== Cycle #77 =================== 17-03-17 23:35:18.438 -07 000000610 INF: AsyncDelayTimer waited 1219ms 17-03-17 23:35:18.438 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start 17-03-17 23:35:18.438 -07 000000610 INF: ReagentValve: Xmit S\r 17-03-17 23:35:18.458 -07 000000610 INF: ReagentValve: Recv 01\r 17-03-17 23:35:18.458 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions. 17-03-17 23:35:18.458 -07 000000610 INF: ReagentValve: Xmit +03\r 17-03-17 23:35:18.688 -07 000000610 INF: ReagentValve: Xmit B\r 17-03-17 23:35:18.708 -07 000000610 INF: ReagentValve: Recv 01AC\r 17-03-17 23:35:18.708 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%) 17-03-17 23:35:18.758 -07 000000610 INF: ReagentValve: Xmit S\r 17-03-17 23:35:18.778 -07 000000610 INF: ReagentValve: Recv 03\r 17-03-17 23:35:18.778 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating 17-03-17 23:35:18.878 -07 000000610 INF: =================== Cycle #77, Pumping Reagent PR2 (3) =================== 17-03-17 23:35:18.878 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1 17-03-17 23:35:18.878 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-17 23:35:18.908 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n 17-03-17 23:35:18.908 -07 000000610 INF: LanePump: Current Position of Pump is: 990 17-03-17 23:35:18.908 -07 000000610 INF: =================== Cycle #77, Pumping Reagent PR2 (3), Aspirating port InputPort =================== 17-03-17 23:35:19.038 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r 17-03-17 23:35:19.078 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-17 23:35:19.948 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-17 23:35:19.978 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 23:35:19.978 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete 17-03-17 23:35:19.978 -07 000000610 INF: =================== Cycle #77, Pumping Reagent PR2 (3) =================== 17-03-17 23:35:20.008 -07 000000409 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 4.039839, 17-03-17 23:35:20.108 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-17 23:35:20.138 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n 17-03-17 23:35:20.138 -07 000000610 INF: LanePump: Current Position of Pump is: 1110 17-03-17 23:35:20.268 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-17 23:35:20.298 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n 17-03-17 23:35:20.298 -07 000000610 INF: LanePump: Current Position of Pump is: 1110 17-03-17 23:35:20.298 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution 17-03-17 23:35:20.428 -07 000000610 INF: LanePump: Xmit /1IR\r 17-03-17 23:35:20.458 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 23:35:20.888 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-17 23:35:20.918 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 23:35:20.918 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete 17-03-17 23:35:20.918 -07 000000610 INF: =================== Cycle #77 =================== 17-03-17 23:35:20.918 -07 000000610 INF: =================== Cycle #77, Flow Cell Temp 65° =================== 17-03-17 23:35:20.918 -07 000000610 INF: =================== Cycle #77, Flow Cell Temp 65°, FC temperature to 65° =================== 17-03-17 23:35:20.918 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl] 17-03-17 23:35:20.918 -07 000000502 INF: FPGA: Recv TEC2TEMP 17-03-17 23:35:20.928 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 23:35:20.928 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl] 17-03-17 23:35:20.928 -07 000000618 INF: FPGA: Recv TEC2EN 17-03-17 23:35:20.938 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:35:20.938 -07 000000610 INF: =================== Cycle #77, Flow Cell Temp 65° =================== 17-03-17 23:35:20.938 -07 000000610 INF: =================== Cycle #77 =================== 17-03-17 23:35:20.938 -07 000000610 INF: WaitCommand(30000) start 17-03-17 23:35:22.078 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:35:22.078 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:35:25.368 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 4.03576, 17-03-17 23:35:27.078 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:35:27.078 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:35:30.728 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 4.026244, 17-03-17 23:35:32.078 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:35:32.078 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:35:36.088 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 4.039839, 17-03-17 23:35:37.078 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:35:37.078 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:35:41.448 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 4.012614, 17-03-17 23:35:42.078 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:35:42.078 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:35:46.808 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 3.985358, 17-03-17 23:35:47.078 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:35:47.078 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:35:50.948 -07 000000610 INF: WaitCommand(30000) end 17-03-17 23:35:50.948 -07 000000610 INF: =================== Cycle #77, Pumping Reagent PR2 (3) =================== 17-03-17 23:35:50.948 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1 17-03-17 23:35:51.048 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-17 23:35:51.078 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n 17-03-17 23:35:51.078 -07 000000610 INF: LanePump: Current Position of Pump is: 1110 17-03-17 23:35:51.078 -07 000000610 INF: =================== Cycle #77, Pumping Reagent PR2 (3), Aspirating port InputPort =================== 17-03-17 23:35:51.208 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r 17-03-17 23:35:51.248 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-17 23:35:51.788 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-17 23:35:51.818 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 23:35:51.818 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete 17-03-17 23:35:51.818 -07 000000610 INF: =================== Cycle #77, Pumping Reagent PR2 (3) =================== 17-03-17 23:35:51.948 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-17 23:35:51.978 -07 000000610 INF: LanePump: Recv /0`1140(0x03)\r\n 17-03-17 23:35:51.978 -07 000000610 INF: LanePump: Current Position of Pump is: 1140 17-03-17 23:35:52.078 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:35:52.078 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:35:52.108 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-17 23:35:52.138 -07 000000610 INF: LanePump: Recv /0`1140(0x03)\r\n 17-03-17 23:35:52.138 -07 000000610 INF: LanePump: Current Position of Pump is: 1140 17-03-17 23:35:52.138 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution 17-03-17 23:35:52.168 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 4.003063, 17-03-17 23:35:52.268 -07 000000610 INF: LanePump: Xmit /1IR\r 17-03-17 23:35:52.298 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 23:35:52.728 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-17 23:35:52.758 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 23:35:52.758 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete 17-03-17 23:35:52.758 -07 000000610 INF: =================== Cycle #77 =================== 17-03-17 23:35:52.758 -07 000000475 INF: WaitCommand(30000) start 17-03-17 23:35:52.758 -07 000000547 INF: =================== Dispense to DispenseAndWait =================== 17-03-17 23:35:52.758 -07 000000547 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort =================== 17-03-17 23:35:53.978 -07 000000547 INF: AsyncDelayTimer waited 1214ms 17-03-17 23:35:53.978 -07 000000547 INF: LanePump: Xmit /1?\r 17-03-17 23:35:54.008 -07 000000547 INF: LanePump: Recv /0`1140(0x03)\r\n 17-03-17 23:35:54.008 -07 000000547 INF: LanePump: Current Position of Pump is: 1140 17-03-17 23:35:54.138 -07 000000547 INF: LanePump: Xmit /1V1500OA0R\r 17-03-17 23:35:54.178 -07 000000547 INF: LanePump: Recv /0@(0x03)\r\n 17-03-17 23:35:55.738 -07 000000547 INF: LanePump: Xmit /1Q\r 17-03-17 23:35:55.768 -07 000000547 INF: LanePump: Recv /0@(0x03)\r\n 17-03-17 23:35:56.188 -07 000000547 INF: LanePump: Xmit /1Q\r 17-03-17 23:35:56.218 -07 000000547 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 23:35:56.218 -07 000000547 INF: LanePump: Waited 2039 ms for pump motion to complete 17-03-17 23:35:56.218 -07 000000547 INF: =================== Dispense to DispenseAndWait =================== 17-03-17 23:35:56.218 -07 000000547 INF: =================== =================== 17-03-17 23:35:57.078 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:35:57.078 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:35:57.528 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 4.015368, 17-03-17 23:36:02.078 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:36:02.088 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:36:02.888 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 3.96762, 17-03-17 23:36:07.078 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:36:07.088 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:36:08.248 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 3.977204, 17-03-17 23:36:12.078 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:36:12.088 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:36:13.608 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 3.997626, 17-03-17 23:36:17.078 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:36:17.088 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:36:18.968 -07 000000409 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 4.028963, 17-03-17 23:36:22.088 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:36:22.088 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:36:22.768 -07 000000475 INF: WaitCommand(30000) end 17-03-17 23:36:22.768 -07 000000610 INF: =================== Cycle #77, Flow Cell Temp 22° =================== 17-03-17 23:36:22.768 -07 000000610 INF: =================== Cycle #77, Flow Cell Temp 22°, FC temperature to 22° =================== 17-03-17 23:36:22.768 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl] 17-03-17 23:36:22.778 -07 000000486 INF: FPGA: Recv TEC2TEMP 17-03-17 23:36:22.778 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 3 ms overall 17-03-17 23:36:22.778 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl] 17-03-17 23:36:22.778 -07 000000512 INF: FPGA: Recv TEC2EN 17-03-17 23:36:22.788 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:36:22.788 -07 000000610 INF: =================== Cycle #77, Flow Cell Temp 22° =================== 17-03-17 23:36:22.788 -07 000000610 INF: =================== Cycle #77 =================== 17-03-17 23:36:22.788 -07 000000610 INF: WaitCommand(60000) start 17-03-17 23:36:24.328 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 4.050752, 17-03-17 23:36:27.088 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:36:27.088 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:36:29.688 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 4.02213, 17-03-17 23:36:32.088 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:36:32.088 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:36:35.048 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 3.994908, 17-03-17 23:36:37.088 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:36:37.088 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:36:40.408 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 3.985358, 17-03-17 23:36:42.088 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:36:42.088 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:36:45.768 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 3.959467, 17-03-17 23:36:47.088 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:36:47.088 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:36:51.128 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 3.958108, 17-03-17 23:36:52.088 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:36:52.088 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:36:56.488 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 3.98264, 17-03-17 23:36:57.088 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:36:57.088 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:37:01.848 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 3.993549, 17-03-17 23:37:02.088 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:37:02.088 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:37:07.088 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:37:07.088 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:37:07.208 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 4.016692, 17-03-17 23:37:12.088 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:37:12.088 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:37:12.568 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 4.023489, 17-03-17 23:37:17.088 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:37:17.088 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:37:17.928 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 4.037119, 17-03-17 23:37:22.088 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:37:22.088 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:37:22.798 -07 000000610 INF: WaitCommand(60000) end 17-03-17 23:37:22.798 -07 000000610 INF: =================== Cycle #77, Pumping Reagent PR2 (3) =================== 17-03-17 23:37:22.798 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1 17-03-17 23:37:22.798 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-17 23:37:22.828 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n 17-03-17 23:37:22.828 -07 000000610 INF: LanePump: Current Position of Pump is: 0 17-03-17 23:37:22.828 -07 000000610 INF: =================== Cycle #77, Pumping Reagent PR2 (3), Aspirating port InputPort =================== 17-03-17 23:37:22.958 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r 17-03-17 23:37:22.998 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-17 23:37:23.288 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 4.03576, 17-03-17 23:37:26.128 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-17 23:37:26.158 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-17 23:37:26.578 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-17 23:37:26.608 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-17 23:37:27.028 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-17 23:37:27.058 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 23:37:27.058 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete 17-03-17 23:37:27.058 -07 000000610 INF: =================== Cycle #77, Pumping Reagent PR2 (3) =================== 17-03-17 23:37:27.088 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:37:27.088 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:37:27.188 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-17 23:37:27.218 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n 17-03-17 23:37:27.218 -07 000000610 INF: LanePump: Current Position of Pump is: 720 17-03-17 23:37:27.348 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-17 23:37:27.378 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n 17-03-17 23:37:27.378 -07 000000610 INF: LanePump: Current Position of Pump is: 720 17-03-17 23:37:27.378 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution 17-03-17 23:37:27.508 -07 000000610 INF: LanePump: Xmit /1IR\r 17-03-17 23:37:27.538 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 23:37:27.968 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-17 23:37:27.998 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 23:37:27.998 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete 17-03-17 23:37:27.998 -07 000000610 INF: =================== Cycle #77 =================== 17-03-17 23:37:28.648 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 4.012614, 17-03-17 23:37:29.218 -07 000000610 INF: AsyncDelayTimer waited 1217ms 17-03-17 23:37:29.218 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start 17-03-17 23:37:29.218 -07 000000610 INF: ReagentValve: Xmit S\r 17-03-17 23:37:29.238 -07 000000610 INF: ReagentValve: Recv 03\r 17-03-17 23:37:29.238 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions. 17-03-17 23:37:29.238 -07 000000610 INF: ReagentValve: Xmit -02\r 17-03-17 23:37:29.388 -07 000000610 INF: ReagentValve: Xmit B\r 17-03-17 23:37:29.408 -07 000000610 INF: ReagentValve: Recv 00E2\r 17-03-17 23:37:29.408 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 226 steps, expected 204. Error = 22 steps (10.8%) 17-03-17 23:37:29.458 -07 000000610 INF: ReagentValve: Xmit S\r 17-03-17 23:37:29.478 -07 000000610 INF: ReagentValve: Recv 02\r 17-03-17 23:37:29.478 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating 17-03-17 23:37:29.578 -07 000000610 INF: =================== Cycle #77, Pumping Reagent USM (2) =================== 17-03-17 23:37:29.578 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1 17-03-17 23:37:29.578 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-17 23:37:29.608 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n 17-03-17 23:37:29.608 -07 000000610 INF: LanePump: Current Position of Pump is: 720 17-03-17 23:37:29.608 -07 000000610 INF: =================== Cycle #77, Pumping Reagent USM (2), Aspirating port InputPort =================== 17-03-17 23:37:29.738 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r 17-03-17 23:37:29.778 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-17 23:37:31.218 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-17 23:37:31.248 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-17 23:37:31.668 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-17 23:37:31.698 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 23:37:31.698 -07 000000610 INF: LanePump: Waited 1920 ms for pump motion to complete 17-03-17 23:37:31.698 -07 000000610 INF: =================== Cycle #77, Pumping Reagent USM (2) =================== 17-03-17 23:37:31.828 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-17 23:37:31.858 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n 17-03-17 23:37:31.858 -07 000000610 INF: LanePump: Current Position of Pump is: 990 17-03-17 23:37:31.988 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-17 23:37:32.018 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n 17-03-17 23:37:32.018 -07 000000610 INF: LanePump: Current Position of Pump is: 990 17-03-17 23:37:32.018 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution 17-03-17 23:37:32.088 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:37:32.088 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:37:32.148 -07 000000610 INF: LanePump: Xmit /1IR\r 17-03-17 23:37:32.178 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 23:37:32.608 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-17 23:37:32.638 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 23:37:32.638 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete 17-03-17 23:37:32.638 -07 000000610 INF: =================== Cycle #77 =================== 17-03-17 23:37:33.858 -07 000000610 INF: AsyncDelayTimer waited 1219ms 17-03-17 23:37:33.858 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start 17-03-17 23:37:33.858 -07 000000610 INF: ReagentValve: Xmit S\r 17-03-17 23:37:33.878 -07 000000610 INF: ReagentValve: Recv 02\r 17-03-17 23:37:33.878 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions. 17-03-17 23:37:33.878 -07 000000610 INF: ReagentValve: Xmit +03\r 17-03-17 23:37:34.008 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 3.970374, 17-03-17 23:37:34.028 -07 000000610 INF: ReagentValve: Xmit B\r 17-03-17 23:37:34.048 -07 000000610 INF: ReagentValve: Recv 00E2\r 17-03-17 23:37:34.048 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 226 steps, expected 204. Error = 22 steps (10.8%) 17-03-17 23:37:34.098 -07 000000610 INF: ReagentValve: Xmit S\r 17-03-17 23:37:34.118 -07 000000610 INF: ReagentValve: Recv 03\r 17-03-17 23:37:34.118 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating 17-03-17 23:37:34.218 -07 000000610 INF: =================== Cycle #77, Pumping Reagent PR2 (3) =================== 17-03-17 23:37:34.218 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1 17-03-17 23:37:34.218 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-17 23:37:34.248 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n 17-03-17 23:37:34.248 -07 000000610 INF: LanePump: Current Position of Pump is: 990 17-03-17 23:37:34.248 -07 000000610 INF: =================== Cycle #77, Pumping Reagent PR2 (3), Aspirating port InputPort =================== 17-03-17 23:37:34.378 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r 17-03-17 23:37:34.418 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-17 23:37:35.288 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-17 23:37:35.318 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 23:37:35.318 -07 000000610 INF: LanePump: Waited 900 ms for pump motion to complete 17-03-17 23:37:35.318 -07 000000610 INF: =================== Cycle #77, Pumping Reagent PR2 (3) =================== 17-03-17 23:37:35.448 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-17 23:37:35.478 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n 17-03-17 23:37:35.478 -07 000000610 INF: LanePump: Current Position of Pump is: 1110 17-03-17 23:37:35.608 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-17 23:37:35.638 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n 17-03-17 23:37:35.638 -07 000000610 INF: LanePump: Current Position of Pump is: 1110 17-03-17 23:37:35.638 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution 17-03-17 23:37:35.768 -07 000000610 INF: LanePump: Xmit /1IR\r 17-03-17 23:37:35.798 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 23:37:36.228 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-17 23:37:36.258 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 23:37:36.258 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete 17-03-17 23:37:36.258 -07 000000610 INF: =================== Cycle #77 =================== 17-03-17 23:37:36.258 -07 000000459 INF: WaitCommand(10000) start 17-03-17 23:37:36.258 -07 000000561 INF: =================== Dispense to DispenseAndWait =================== 17-03-17 23:37:36.258 -07 000000561 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort =================== 17-03-17 23:37:37.088 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:37:37.088 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:37:37.478 -07 000000561 INF: AsyncDelayTimer waited 1216ms 17-03-17 23:37:37.478 -07 000000561 INF: LanePump: Xmit /1?\r 17-03-17 23:37:37.508 -07 000000561 INF: LanePump: Recv /0`1110(0x03)\r\n 17-03-17 23:37:37.508 -07 000000561 INF: LanePump: Current Position of Pump is: 1110 17-03-17 23:37:37.638 -07 000000561 INF: LanePump: Xmit /1V1500OA0R\r 17-03-17 23:37:37.678 -07 000000561 INF: LanePump: Recv /0@(0x03)\r\n 17-03-17 23:37:39.208 -07 000000561 INF: LanePump: Xmit /1Q\r 17-03-17 23:37:39.238 -07 000000561 INF: LanePump: Recv /0@(0x03)\r\n 17-03-17 23:37:39.368 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 3.962185, 17-03-17 23:37:39.658 -07 000000561 INF: LanePump: Xmit /1Q\r 17-03-17 23:37:39.688 -07 000000561 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 23:37:39.688 -07 000000561 INF: LanePump: Waited 2009 ms for pump motion to complete 17-03-17 23:37:39.688 -07 000000561 INF: =================== Dispense to DispenseAndWait =================== 17-03-17 23:37:39.688 -07 000000561 INF: =================== =================== 17-03-17 23:37:42.088 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:37:42.088 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:37:44.728 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 3.99219, 17-03-17 23:37:46.268 -07 000000459 INF: WaitCommand(10000) end 17-03-17 23:37:46.268 -07 000000610 INF: =================== Cycle #77, Imaging =================== 17-03-17 23:37:46.268 -07 000000610 INF: Imaging Cycle 77: ScanTilesCommand Cycle 77 time start. 17-03-17 23:37:46.268 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand 17-03-17 23:37:46.268 -07 000000610 INF: ReagentValve: Xmit S\r 17-03-17 23:37:46.298 -07 000000610 INF: ReagentValve: Recv 03\r 17-03-17 23:37:46.298 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions. 17-03-17 23:37:46.298 -07 000000610 INF: ReagentValve: Xmit -18\r 17-03-17 23:37:46.598 -07 000000610 INF: ReagentValve: Xmit B\r 17-03-17 23:37:46.618 -07 000000610 INF: ReagentValve: Recv 0278\r 17-03-17 23:37:46.618 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%) 17-03-17 23:37:46.668 -07 000000610 INF: ReagentValve: Xmit S\r 17-03-17 23:37:46.688 -07 000000610 INF: ReagentValve: Recv 18\r 17-03-17 23:37:46.688 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:37:46.688 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:37:46.688 -07 000000486 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start. 17-03-17 23:37:46.688 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:37:46.688 -07 000000486 INF: FPGA: Xmit EXLED1ON\n [RedLED] 17-03-17 23:37:46.698 -07 000000482 INF: FPGA: Recv EXLED1ON 17-03-17 23:37:46.698 -07 000000486 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 2 ms to get response, and 5 ms overall 17-03-17 23:37:46.698 -07 000000486 INF: FPGA: Xmit EXLED1ADCR\n [RedLED] 17-03-17 23:37:46.698 -07 000000576 INF: FPGA: Recv EXLED1ADCR 23157 17-03-17 23:37:46.708 -07 000000486 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:37:46.708 -07 000000486 INF: RedLED: Using Red data: Photodiode ADC 23157 --> 7.4 mW (old method), or 205.2 mW (new method). Difference = 197.8 mW 17-03-17 23:37:46.708 -07 000000486 INF: FPGA: Xmit EXLED1OFF\n [RedLED] 17-03-17 23:37:46.708 -07 000000547 INF: FPGA: Recv EXLED1OFF 17-03-17 23:37:46.718 -07 000000486 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:37:46.718 -07 000000486 INF: RedLED: LED was on for 17 ms 17-03-17 23:37:46.718 -07 000000486 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 23 ms. 17-03-17 23:37:46.718 -07 000000486 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start. 17-03-17 23:37:46.718 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:37:46.718 -07 000000486 INF: FPGA: Xmit EXLED2ON\n [GreenLED] 17-03-17 23:37:46.718 -07 000000502 INF: FPGA: Recv EXLED2ON 17-03-17 23:37:46.728 -07 000000486 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:37:46.728 -07 000000486 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED] 17-03-17 23:37:46.728 -07 000000448 INF: FPGA: Recv EXLED1ADCR 2101 17-03-17 23:37:46.738 -07 000000486 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:37:46.738 -07 000000486 INF: GreenLED: Using Green data: Photodiode ADC 2101 --> 0.9 mW (old method), or 182.5 mW (new method). Difference = 181.6 mW 17-03-17 23:37:46.738 -07 000000486 INF: FPGA: Xmit EXLED2OFF\n [GreenLED] 17-03-17 23:37:46.738 -07 000000576 INF: FPGA: Recv EXLED2OFF 17-03-17 23:37:46.748 -07 000000486 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:37:46.748 -07 000000486 INF: GreenLED: LED was on for 20 ms 17-03-17 23:37:46.748 -07 000000486 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms. 17-03-17 23:37:46.748 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator] 17-03-17 23:37:46.748 -07 000000618 INF: FPGA: Recv EMCUR 17-03-17 23:37:46.758 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-17 23:37:46.758 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator] 17-03-17 23:37:47.088 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:37:47.088 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:37:47.258 -07 000000475 INF: FPGA: Recv EMOUT 17-03-17 23:37:47.258 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall 17-03-17 23:37:47.258 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator] 17-03-17 23:37:47.258 -07 000000627 INF: FPGA: Recv EMCUR 17-03-17 23:37:47.268 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 23:37:47.268 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-17 23:37:47.268 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True) 17-03-17 23:37:47.268 -07 000000610 INF: Y Motor: Moving to 59.9126 mm, started at 75.3809 mm, delta = -15.4683 mm 17-03-17 23:37:47.268 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:37:47.268 -07 000000482 INF: FPGA: Recv YRDPOS 154380 17-03-17 23:37:47.278 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:37:47.278 -07 000000610 INF: Y Motor: Encoder = 154380 = motor step 120609.4 = 75.3809 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:37:47.278 -07 000000610 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False 17-03-17 23:37:47.278 -07 000000610 INF: Y Motor: Moving to 122701 encoder counts 17-03-17 23:37:47.278 -07 000000610 INF: FPGA: Xmit YMVTO 122701\n [Y Motor] 17-03-17 23:37:48.958 -07 000000541 INF: FPGA: Recv YMVTO 122703 24775 17-03-17 23:37:48.958 -07 000000610 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1676 ms to get response, and 1685 ms overall 17-03-17 23:37:48.958 -07 000000610 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm) 17-03-17 23:37:48.958 -07 000000610 INF: Y Motor: To move from 75.381 to 59.913 (-15.468 mm) should take 24749 steps, but required 24775 steps (15.484 mm). Slippage = 0.016 mm (0.00%). 17-03-17 23:37:48.958 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1686 ms, distance = 15.468 mm, average velocity = 9.175 mm/sec 17-03-17 23:37:50.088 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 4.014009, 17-03-17 23:37:51.958 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:37:51.958 -07 000000480 INF: FPGA: Recv YRDPOS 122697 17-03-17 23:37:51.968 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:37:51.968 -07 000000610 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:37:51.988 -07 000000610 INF: Y Motor: After move to 59.912609, error = -0.001965, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 23:37:51.988 -07 000000610 INF: Y Motor: Position error after settling = -4 encoder counts (-0.002 mm), Delta during settling = -6 counts (-0.003 mm) 17-03-17 23:37:51.988 -07 000000610 INF: Y Motor: Moved to 59.9106 after 4723 ms 17-03-17 23:37:51.988 -07 000000610 INF: =================== Cycle #77, Imaging, Performing CoarseFocus. =================== 17-03-17 23:37:51.988 -07 000000610 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:37:51.998 -07 000000576 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:37:52.008 -07 000000610 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:37:52.008 -07 000000610 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 23:37:52.088 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:37:52.088 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:37:52.208 -07 000000409 INF: FPGA: Recv FOCMRRIMG 17-03-17 23:37:52.208 -07 000000610 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 23:37:52.208 -07 000000610 INF: Scanning Z-Position: -0.213089 17-03-17 23:37:52.208 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 46549, sync = True, waitForSettling = True) 17-03-17 23:37:52.208 -07 000000610 INF: Z Motor: Moving to -0.213088 mm, started at -0.126889 mm, distance = -86.20 um 17-03-17 23:37:52.208 -07 000000610 INF: FPGA: Xmit ZDACW 46549\n [Z Motor] 17-03-17 23:37:52.208 -07 000000561 INF: FPGA: Recv ZDACW 17-03-17 23:37:52.218 -07 000000610 INF: FPGA: 'ZDACW 46549' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-17 23:37:52.218 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:37:52.218 -07 000000409 INF: FPGA: Recv ZDACR 46549 17-03-17 23:37:52.228 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:37:52.228 -07 000000610 INF: Z Motor: Waiting 500 ms for long move > 40 um 17-03-17 23:37:52.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:37:52.728 -07 000000480 INF: FPGA: Recv ZSGSRD 42466 17-03-17 23:37:52.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:37:52.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:37:52.738 -07 000000438 INF: FPGA: Recv ZSGSRD 42465 17-03-17 23:37:52.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:37:52.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:37:52.748 -07 000000541 INF: FPGA: Recv ZSGSRD 42459 17-03-17 23:37:52.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:37:52.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:37:52.758 -07 000000561 INF: FPGA: Recv ZSGSRD 42456 17-03-17 23:37:52.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:37:52.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:37:52.768 -07 000000482 INF: FPGA: Recv ZSGSRD 42461 17-03-17 23:37:52.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:37:52.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:37:52.778 -07 000000480 INF: FPGA: Recv ZSGSRD 42467 17-03-17 23:37:52.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:37:52.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:37:52.788 -07 000000438 INF: FPGA: Recv ZSGSRD 42461 17-03-17 23:37:52.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:37:52.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:37:52.798 -07 000000448 INF: FPGA: Recv ZSGSRD 42457 17-03-17 23:37:52.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:37:52.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:37:52.808 -07 000000561 INF: FPGA: Recv ZSGSRD 42462 17-03-17 23:37:52.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:37:52.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:37:52.818 -07 000000482 INF: FPGA: Recv ZSGSRD 42465 17-03-17 23:37:52.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:37:52.828 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:37:52.828 -07 000000502 INF: FPGA: Recv ZPIEZORD 38220 17-03-17 23:37:52.838 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:37:52.838 -07 000000610 INF: Z Motor: Piezo is near 61.6 V (nominally 0 to 100 V), expect near 71.0 V, since DAC is at 7.103 V. Piezo Error = -9.4 V. 17-03-17 23:37:52.838 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -213.1 um, Read 10 ADC samples: Avg = 42462 (-212.1 uncal um), Error = 1.0 uncal um, Median = 42462 (-212.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 42456 (-212.1 uncal um), Max = 42467 (-212.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um) 17-03-17 23:37:52.838 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 42462, posNoise = 5, negNoise = 6 17-03-17 23:37:52.838 -07 000000610 INF: Z Motor: After move to -0.213088, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:37:52.838 -07 000000610 INF: Z Motor: MoveAbsStepped took 625 ms) 17-03-17 23:37:52.838 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:37:52.838 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:37:52.838 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:37:52.838 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:37:52.838 -07 000000618 INF: Disarm and arm camera sensor 0: FullImageTriggered start. 17-03-17 23:37:52.838 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:37:52.838 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:37:52.838 -07 000000618 INF: Camera: sBCa_SetPowerMode(785074288, 1) start. 17-03-17 23:37:52.868 -07 000000618 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms. 17-03-17 23:37:52.868 -07 000000618 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start. 17-03-17 23:37:52.868 -07 000000618 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms. 17-03-17 23:37:52.868 -07 000000618 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start. 17-03-17 23:37:52.878 -07 000000618 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms. 17-03-17 23:37:52.878 -07 000000618 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 39 ms. 17-03-17 23:37:52.888 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera] 17-03-17 23:37:53.078 -07 000000448 INF: FPGA: Recv @CAMSNAP turning led on 192 17-03-17 23:37:53.278 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 392 17-03-17 23:37:53.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392 17-03-17 23:37:53.278 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start. 17-03-17 23:37:53.408 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1145516880, 0x0, 314322768) start. 17-03-17 23:37:53.468 -07 000000576 INF: FPGA: Recv @CAMSNAP 585 17-03-17 23:37:53.468 -07 000000623 INF: FPGA: Recv CAMSNAP 17-03-17 23:37:53.478 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 579 ms to get response, and 589 ms overall 17-03-17 23:37:53.988 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1145516880, 0x0, 314322768) end. Duration was 588 ms. 17-03-17 23:37:53.998 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:37:53.998 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:37:53.998 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 716 ms. 17-03-17 23:37:54.178 -07 000000610 INF: Using center-column region for through-focus analysis: Row=512; Col=2048 17-03-17 23:37:54.178 -07 000000610 INF: ComputeBrenner start 17-03-17 23:37:54.188 -07 000000610 INF: Image SNR check: start 17-03-17 23:37:54.198 -07 000000610 INF: Image SNR check: image is Dark [peak (Max-Min)=15.66] 17-03-17 23:37:54.198 -07 000000610 INF: Scanning Z-Position: -0.211089 17-03-17 23:37:54.198 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 46112, sync = True, waitForSettling = True) 17-03-17 23:37:54.198 -07 000000610 INF: Z Motor: Moving to -0.211087 mm, started at -0.213108 mm, distance = 2.02 um 17-03-17 23:37:54.198 -07 000000610 INF: FPGA: Xmit ZDACW 46112\n [Z Motor] 17-03-17 23:37:54.198 -07 000000486 INF: FPGA: Recv ZDACW 17-03-17 23:37:54.208 -07 000000610 INF: FPGA: 'ZDACW 46112' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:37:54.208 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:37:54.208 -07 000000547 INF: FPGA: Recv ZDACR 46112 17-03-17 23:37:54.218 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:37:54.218 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:37:54.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:37:54.368 -07 000000459 INF: FPGA: Recv ZSGSRD 42144 17-03-17 23:37:54.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:37:54.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:37:54.378 -07 000000541 INF: FPGA: Recv ZSGSRD 42149 17-03-17 23:37:54.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:37:54.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:37:54.388 -07 000000438 INF: FPGA: Recv ZSGSRD 42150 17-03-17 23:37:54.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:37:54.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:37:54.398 -07 000000486 INF: FPGA: Recv ZSGSRD 42151 17-03-17 23:37:54.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:37:54.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:37:54.408 -07 000000480 INF: FPGA: Recv ZSGSRD 42147 17-03-17 23:37:54.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:37:54.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:37:54.418 -07 000000459 INF: FPGA: Recv ZSGSRD 42146 17-03-17 23:37:54.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:37:54.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:37:54.428 -07 000000541 INF: FPGA: Recv ZSGSRD 42154 17-03-17 23:37:54.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:37:54.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:37:54.438 -07 000000623 INF: FPGA: Recv ZSGSRD 42152 17-03-17 23:37:54.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:37:54.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:37:54.448 -07 000000486 INF: FPGA: Recv ZSGSRD 42143 17-03-17 23:37:54.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:37:54.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:37:54.458 -07 000000475 INF: FPGA: Recv ZSGSRD 42145 17-03-17 23:37:54.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:37:54.468 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:37:54.468 -07 000000459 INF: FPGA: Recv ZPIEZORD 37680 17-03-17 23:37:54.478 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:37:54.478 -07 000000610 INF: Z Motor: Piezo is near 60.5 V (nominally 0 to 100 V), expect near 70.4 V, since DAC is at 7.036 V. Piezo Error = -9.9 V. 17-03-17 23:37:54.478 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -211.1 um, Read 10 ADC samples: Avg = 42148 (-210.1 uncal um), Error = 1.0 uncal um, Median = 42148 (-210.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 42143 (-210.1 uncal um), Max = 42154 (-210.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-17 23:37:54.478 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 42148, posNoise = 6, negNoise = 5 17-03-17 23:37:54.478 -07 000000610 INF: Z Motor: After move to -0.211087, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:37:54.478 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms) 17-03-17 23:37:54.478 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:37:54.478 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:37:54.478 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:37:54.478 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:37:54.478 -07 000000512 INF: Disarm and arm camera sensor 0: FullImageTriggered start. 17-03-17 23:37:54.478 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:37:54.478 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-17 23:37:54.478 -07 000000512 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start. 17-03-17 23:37:54.488 -07 000000512 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms. 17-03-17 23:37:54.488 -07 000000512 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start. 17-03-17 23:37:54.498 -07 000000512 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms. 17-03-17 23:37:54.498 -07 000000512 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms. 17-03-17 23:37:54.498 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera] 17-03-17 23:37:54.698 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 194 17-03-17 23:37:54.898 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 394 17-03-17 23:37:54.898 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 394 17-03-17 23:37:54.898 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start. 17-03-17 23:37:54.908 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1077874736, 0x0, 314322768) start. 17-03-17 23:37:55.088 -07 000000547 INF: FPGA: Recv @CAMSNAP 585 17-03-17 23:37:55.088 -07 000000486 INF: FPGA: Recv CAMSNAP 17-03-17 23:37:55.088 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 586 ms to get response, and 589 ms overall 17-03-17 23:37:55.448 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 3.988112, 17-03-17 23:37:55.488 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1077874736, 0x0, 314322768) end. Duration was 582 ms. 17-03-17 23:37:55.488 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:37:55.488 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:37:55.488 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 592 ms. 17-03-17 23:37:55.688 -07 000000610 INF: ComputeBrenner start 17-03-17 23:37:55.698 -07 000000610 INF: Image SNR check: start 17-03-17 23:37:55.708 -07 000000610 INF: Image SNR check: image is Dark [peak (Max-Min)=15.96] 17-03-17 23:37:55.708 -07 000000610 INF: Scanning Z-Position: -0.209089 17-03-17 23:37:55.708 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 45675, sync = True, waitForSettling = True) 17-03-17 23:37:55.708 -07 000000610 INF: Z Motor: Moving to -0.209087 mm, started at -0.211091 mm, distance = 2.00 um 17-03-17 23:37:55.708 -07 000000610 INF: FPGA: Xmit ZDACW 45675\n [Z Motor] 17-03-17 23:37:55.708 -07 000000512 INF: FPGA: Recv ZDACW 17-03-17 23:37:55.718 -07 000000610 INF: FPGA: 'ZDACW 45675' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:37:55.718 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:37:55.718 -07 000000576 INF: FPGA: Recv ZDACR 45675 17-03-17 23:37:55.728 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:37:55.728 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:37:55.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:37:55.878 -07 000000486 INF: FPGA: Recv ZSGSRD 41837 17-03-17 23:37:55.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:37:55.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:37:55.888 -07 000000433 INF: FPGA: Recv ZSGSRD 41837 17-03-17 23:37:55.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:37:55.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:37:55.908 -07 000000627 INF: FPGA: Recv ZSGSRD 41834 17-03-17 23:37:55.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-17 23:37:55.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:37:55.918 -07 000000561 INF: FPGA: Recv ZSGSRD 41835 17-03-17 23:37:55.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:37:55.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:37:55.948 -07 000000623 INF: FPGA: Recv ZSGSRD 41833 17-03-17 23:37:55.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-17 23:37:55.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:37:55.968 -07 000000576 INF: FPGA: Recv ZSGSRD 41836 17-03-17 23:37:55.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-17 23:37:55.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:37:55.978 -07 000000623 INF: FPGA: Recv ZSGSRD 41837 17-03-17 23:37:55.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:37:55.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:37:55.988 -07 000000433 INF: FPGA: Recv ZSGSRD 41835 17-03-17 23:37:55.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:37:55.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:37:55.998 -07 000000438 INF: FPGA: Recv ZSGSRD 41830 17-03-17 23:37:56.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:37:56.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:37:56.008 -07 000000561 INF: FPGA: Recv ZSGSRD 41834 17-03-17 23:37:56.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:37:56.018 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:37:56.018 -07 000000576 INF: FPGA: Recv ZPIEZORD 37254 17-03-17 23:37:56.028 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:37:56.028 -07 000000610 INF: Z Motor: Piezo is near 59.6 V (nominally 0 to 100 V), expect near 69.7 V, since DAC is at 6.970 V. Piezo Error = -10.1 V. 17-03-17 23:37:56.028 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -209.1 um, Read 10 ADC samples: Avg = 41835 (-208.1 uncal um), Error = 1.0 uncal um, Median = 41835 (-208.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 41830 (-208.1 uncal um), Max = 41837 (-208.1 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-17 23:37:56.028 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 41835, posNoise = 2, negNoise = 5 17-03-17 23:37:56.028 -07 000000610 INF: Z Motor: After move to -0.209087, error = 0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:37:56.028 -07 000000610 INF: Z Motor: MoveAbsStepped took 318 ms) 17-03-17 23:37:56.028 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:37:56.028 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:37:56.028 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:37:56.028 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:37:56.028 -07 000000561 INF: Disarm and arm camera sensor 0: FullImageTriggered start. 17-03-17 23:37:56.028 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:37:56.028 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:37:56.028 -07 000000561 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start. 17-03-17 23:37:56.038 -07 000000561 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms. 17-03-17 23:37:56.038 -07 000000561 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start. 17-03-17 23:37:56.048 -07 000000561 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms. 17-03-17 23:37:56.048 -07 000000561 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms. 17-03-17 23:37:56.048 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera] 17-03-17 23:37:56.248 -07 000000486 INF: FPGA: Recv @CAMSNAP turning led on 194 17-03-17 23:37:56.448 -07 000000409 INF: FPGA: Recv @CAMSNAP img rdy 394 17-03-17 23:37:56.448 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 394 17-03-17 23:37:56.448 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start. 17-03-17 23:37:56.448 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) start. 17-03-17 23:37:56.638 -07 000000561 INF: FPGA: Recv @CAMSNAP 585 17-03-17 23:37:56.638 -07 000000576 INF: FPGA: Recv CAMSNAP 17-03-17 23:37:56.638 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 583 ms to get response, and 589 ms overall 17-03-17 23:37:57.038 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) end. Duration was 586 ms. 17-03-17 23:37:57.038 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:37:57.038 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:37:57.038 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms. 17-03-17 23:37:57.088 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:37:57.138 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:37:57.238 -07 000000610 INF: ComputeBrenner start 17-03-17 23:37:57.248 -07 000000610 INF: Image SNR check: start 17-03-17 23:37:57.368 -07 000000610 INF: Image SNR check: image is Dark [peak (Max-Min)=16.04] 17-03-17 23:37:57.368 -07 000000610 INF: Scanning Z-Position: -0.207089 17-03-17 23:37:57.368 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 45239, sync = True, waitForSettling = True) 17-03-17 23:37:57.368 -07 000000610 INF: Z Motor: Moving to -0.207091 mm, started at -0.209080 mm, distance = 1.99 um 17-03-17 23:37:57.368 -07 000000610 INF: FPGA: Xmit ZDACW 45239\n [Z Motor] 17-03-17 23:37:57.368 -07 000000547 INF: FPGA: Recv ZDACW 17-03-17 23:37:57.378 -07 000000610 INF: FPGA: 'ZDACW 45239' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-17 23:37:57.378 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:37:57.378 -07 000000618 INF: FPGA: Recv ZDACR 45239 17-03-17 23:37:57.388 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:37:57.388 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:37:57.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:37:57.538 -07 000000486 INF: FPGA: Recv ZSGSRD 41528 17-03-17 23:37:57.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:37:57.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:37:57.548 -07 000000433 INF: FPGA: Recv ZSGSRD 41525 17-03-17 23:37:57.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:37:57.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:37:57.558 -07 000000482 INF: FPGA: Recv ZSGSRD 41522 17-03-17 23:37:57.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:37:57.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:37:57.568 -07 000000561 INF: FPGA: Recv ZSGSRD 41532 17-03-17 23:37:57.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:37:57.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:37:57.578 -07 000000541 INF: FPGA: Recv ZSGSRD 41523 17-03-17 23:37:57.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:37:57.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:37:57.588 -07 000000486 INF: FPGA: Recv ZSGSRD 41524 17-03-17 23:37:57.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:37:57.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:37:57.598 -07 000000512 INF: FPGA: Recv ZSGSRD 41522 17-03-17 23:37:57.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:37:57.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:37:57.608 -07 000000482 INF: FPGA: Recv ZSGSRD 41526 17-03-17 23:37:57.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:37:57.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:37:57.618 -07 000000623 INF: FPGA: Recv ZSGSRD 41529 17-03-17 23:37:57.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:37:57.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:37:57.628 -07 000000438 INF: FPGA: Recv ZSGSRD 41517 17-03-17 23:37:57.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:37:57.638 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:37:57.638 -07 000000480 INF: FPGA: Recv ZPIEZORD 36863 17-03-17 23:37:57.648 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:37:57.648 -07 000000610 INF: Z Motor: Piezo is near 58.7 V (nominally 0 to 100 V), expect near 69.0 V, since DAC is at 6.903 V. Piezo Error = -10.3 V. 17-03-17 23:37:57.648 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -207.1 um, Read 10 ADC samples: Avg = 41525 (-206.1 uncal um), Error = 1.0 uncal um, Median = 41524 (-206.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 41517 (-206.1 uncal um), Max = 41532 (-206.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um) 17-03-17 23:37:57.648 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 41525, posNoise = 7, negNoise = 8 17-03-17 23:37:57.648 -07 000000610 INF: Z Motor: After move to -0.207091, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:37:57.648 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms) 17-03-17 23:37:57.648 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:37:57.648 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:37:57.648 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:37:57.648 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:37:57.648 -07 000000438 INF: Disarm and arm camera sensor 0: FullImageTriggered start. 17-03-17 23:37:57.648 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:37:57.658 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:37:57.658 -07 000000438 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start. 17-03-17 23:37:57.658 -07 000000438 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms. 17-03-17 23:37:57.658 -07 000000438 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start. 17-03-17 23:37:57.668 -07 000000438 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms. 17-03-17 23:37:57.668 -07 000000438 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms. 17-03-17 23:37:57.668 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera] 17-03-17 23:37:57.868 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 192 17-03-17 23:37:58.068 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 392 17-03-17 23:37:58.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392 17-03-17 23:37:58.068 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start. 17-03-17 23:37:58.068 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1077874736, 0x0, 314322768) start. 17-03-17 23:37:58.258 -07 000000576 INF: FPGA: Recv @CAMSNAP 585 17-03-17 23:37:58.258 -07 000000547 INF: FPGA: Recv CAMSNAP 17-03-17 23:37:58.258 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 586 ms to get response, and 589 ms overall 17-03-17 23:37:58.658 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1077874736, 0x0, 314322768) end. Duration was 583 ms. 17-03-17 23:37:58.658 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:37:58.658 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:37:58.658 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 593 ms. 17-03-17 23:37:58.858 -07 000000610 INF: ComputeBrenner start 17-03-17 23:37:58.868 -07 000000610 INF: Image SNR check: start 17-03-17 23:37:58.878 -07 000000610 INF: Image SNR check: image is Dark [peak (Max-Min)=16.02] 17-03-17 23:37:58.878 -07 000000610 INF: Scanning Z-Position: -0.205089 17-03-17 23:37:58.878 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 44802, sync = True, waitForSettling = True) 17-03-17 23:37:58.878 -07 000000610 INF: Z Motor: Moving to -0.205090 mm, started at -0.207089 mm, distance = 2.00 um 17-03-17 23:37:58.878 -07 000000610 INF: FPGA: Xmit ZDACW 44802\n [Z Motor] 17-03-17 23:37:58.878 -07 000000480 INF: FPGA: Recv ZDACW 17-03-17 23:37:58.888 -07 000000610 INF: FPGA: 'ZDACW 44802' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:37:58.888 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:37:58.888 -07 000000502 INF: FPGA: Recv ZDACR 44802 17-03-17 23:37:58.898 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:37:58.898 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:37:59.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:37:59.048 -07 000000541 INF: FPGA: Recv ZSGSRD 41210 17-03-17 23:37:59.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:37:59.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:37:59.058 -07 000000486 INF: FPGA: Recv ZSGSRD 41215 17-03-17 23:37:59.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:37:59.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:37:59.068 -07 000000459 INF: FPGA: Recv ZSGSRD 41213 17-03-17 23:37:59.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:37:59.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:37:59.078 -07 000000482 INF: FPGA: Recv ZSGSRD 41216 17-03-17 23:37:59.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:37:59.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:37:59.088 -07 000000547 INF: FPGA: Recv ZSGSRD 41213 17-03-17 23:37:59.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:37:59.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:37:59.098 -07 000000618 INF: FPGA: Recv ZSGSRD 41210 17-03-17 23:37:59.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:37:59.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:37:59.108 -07 000000512 INF: FPGA: Recv ZSGSRD 41213 17-03-17 23:37:59.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:37:59.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:37:59.118 -07 000000459 INF: FPGA: Recv ZSGSRD 41214 17-03-17 23:37:59.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:37:59.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:37:59.128 -07 000000502 INF: FPGA: Recv ZSGSRD 41211 17-03-17 23:37:59.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:37:59.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:37:59.138 -07 000000486 INF: FPGA: Recv ZSGSRD 41215 17-03-17 23:37:59.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:37:59.148 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:37:59.148 -07 000000618 INF: FPGA: Recv ZPIEZORD 36458 17-03-17 23:37:59.158 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:37:59.158 -07 000000610 INF: Z Motor: Piezo is near 57.9 V (nominally 0 to 100 V), expect near 68.4 V, since DAC is at 6.836 V. Piezo Error = -10.5 V. 17-03-17 23:37:59.158 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -205.1 um, Read 10 ADC samples: Avg = 41213 (-204.1 uncal um), Error = 1.0 uncal um, Median = 41213 (-204.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 41210 (-204.1 uncal um), Max = 41216 (-204.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um) 17-03-17 23:37:59.158 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 41213, posNoise = 3, negNoise = 3 17-03-17 23:37:59.158 -07 000000610 INF: Z Motor: After move to -0.205090, error = 0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:37:59.158 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms) 17-03-17 23:37:59.158 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:37:59.158 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:37:59.158 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:37:59.158 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:37:59.158 -07 000000448 INF: Disarm and arm camera sensor 0: FullImageTriggered start. 17-03-17 23:37:59.158 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:37:59.158 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:37:59.158 -07 000000448 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start. 17-03-17 23:37:59.168 -07 000000448 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms. 17-03-17 23:37:59.168 -07 000000448 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start. 17-03-17 23:37:59.178 -07 000000448 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms. 17-03-17 23:37:59.178 -07 000000448 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms. 17-03-17 23:37:59.178 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera] 17-03-17 23:37:59.378 -07 000000409 INF: FPGA: Recv @CAMSNAP turning led on 192 17-03-17 23:37:59.578 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 392 17-03-17 23:37:59.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392 17-03-17 23:37:59.578 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start. 17-03-17 23:37:59.578 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) start. 17-03-17 23:37:59.768 -07 000000409 INF: FPGA: Recv @CAMSNAP 585 17-03-17 23:37:59.768 -07 000000618 INF: FPGA: Recv CAMSNAP 17-03-17 23:37:59.768 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 585 ms to get response, and 589 ms overall 17-03-17 23:38:00.168 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) end. Duration was 587 ms. 17-03-17 23:38:00.168 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:38:00.168 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:38:00.168 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 592 ms. 17-03-17 23:38:00.268 -07 000000610 INF: ComputeBrenner start 17-03-17 23:38:00.278 -07 000000610 INF: Image SNR check: start 17-03-17 23:38:00.288 -07 000000610 INF: Image SNR check: image is Dark [peak (Max-Min)=16.02] 17-03-17 23:38:00.288 -07 000000610 INF: Scanning Z-Position: -0.203089 17-03-17 23:38:00.288 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 44365, sync = True, waitForSettling = True) 17-03-17 23:38:00.288 -07 000000610 INF: Z Motor: Moving to -0.203090 mm, started at -0.205084 mm, distance = 1.99 um 17-03-17 23:38:00.288 -07 000000610 INF: FPGA: Xmit ZDACW 44365\n [Z Motor] 17-03-17 23:38:00.288 -07 000000459 INF: FPGA: Recv ZDACW 17-03-17 23:38:00.298 -07 000000610 INF: FPGA: 'ZDACW 44365' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:38:00.298 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:38:00.298 -07 000000618 INF: FPGA: Recv ZDACR 44365 17-03-17 23:38:00.308 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:00.308 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:38:00.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:00.458 -07 000000576 INF: FPGA: Recv ZSGSRD 40904 17-03-17 23:38:00.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:38:00.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:00.468 -07 000000561 INF: FPGA: Recv ZSGSRD 40900 17-03-17 23:38:00.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:00.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:00.478 -07 000000482 INF: FPGA: Recv ZSGSRD 40901 17-03-17 23:38:00.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:00.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:00.498 -07 000000576 INF: FPGA: Recv ZSGSRD 40894 17-03-17 23:38:00.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-17 23:38:00.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:00.508 -07 000000512 INF: FPGA: Recv ZSGSRD 40897 17-03-17 23:38:00.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:00.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:00.518 -07 000000482 INF: FPGA: Recv ZSGSRD 40903 17-03-17 23:38:00.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:00.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:00.528 -07 000000459 INF: FPGA: Recv ZSGSRD 40899 17-03-17 23:38:00.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:00.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:00.538 -07 000000448 INF: FPGA: Recv ZSGSRD 40897 17-03-17 23:38:00.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:00.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:00.548 -07 000000623 INF: FPGA: Recv ZSGSRD 40901 17-03-17 23:38:00.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:00.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:00.558 -07 000000459 INF: FPGA: Recv ZSGSRD 40898 17-03-17 23:38:00.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:00.568 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:38:00.568 -07 000000576 INF: FPGA: Recv ZPIEZORD 36097 17-03-17 23:38:00.578 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:00.578 -07 000000610 INF: Z Motor: Piezo is near 57.1 V (nominally 0 to 100 V), expect near 67.7 V, since DAC is at 6.770 V. Piezo Error = -10.6 V. 17-03-17 23:38:00.578 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -203.1 um, Read 10 ADC samples: Avg = 40899 (-202.1 uncal um), Error = 1.0 uncal um, Median = 40900 (-202.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 40894 (-202.1 uncal um), Max = 40904 (-202.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-17 23:38:00.578 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 40899, posNoise = 5, negNoise = 5 17-03-17 23:38:00.578 -07 000000610 INF: Z Motor: After move to -0.203090, error = 0.000023, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:38:00.578 -07 000000610 INF: Z Motor: MoveAbsStepped took 288 ms) 17-03-17 23:38:00.578 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:38:00.578 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:38:00.578 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:38:00.578 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:38:00.578 -07 000000459 INF: Disarm and arm camera sensor 0: FullImageTriggered start. 17-03-17 23:38:00.578 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:38:00.578 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:38:00.578 -07 000000459 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start. 17-03-17 23:38:00.588 -07 000000459 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 4 ms. 17-03-17 23:38:00.588 -07 000000459 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start. 17-03-17 23:38:00.598 -07 000000459 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms. 17-03-17 23:38:00.598 -07 000000459 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms. 17-03-17 23:38:00.598 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera] 17-03-17 23:38:00.808 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 4.007176, 17-03-17 23:38:00.808 -07 000000482 INF: FPGA: Recv @CAMSNAP turning led on 197 17-03-17 23:38:00.998 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 395 17-03-17 23:38:00.998 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 395 17-03-17 23:38:00.998 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start. 17-03-17 23:38:00.998 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1133672040, 0x0, 314322768) start. 17-03-17 23:38:01.188 -07 000000433 INF: FPGA: Recv @CAMSNAP 585 17-03-17 23:38:01.188 -07 000000576 INF: FPGA: Recv CAMSNAP 17-03-17 23:38:01.188 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 586 ms to get response, and 589 ms overall 17-03-17 23:38:01.588 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1133672040, 0x0, 314322768) end. Duration was 584 ms. 17-03-17 23:38:01.588 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:38:01.588 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:38:01.588 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 589 ms. 17-03-17 23:38:01.798 -07 000000610 INF: ComputeBrenner start 17-03-17 23:38:01.808 -07 000000610 INF: Image SNR check: start 17-03-17 23:38:01.818 -07 000000610 INF: Image SNR check: image is Dark [peak (Max-Min)=16.06] 17-03-17 23:38:01.818 -07 000000610 INF: Scanning Z-Position: -0.201089 17-03-17 23:38:01.818 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 43928, sync = True, waitForSettling = True) 17-03-17 23:38:01.818 -07 000000610 INF: Z Motor: Moving to -0.201089 mm, started at -0.203067 mm, distance = 1.98 um 17-03-17 23:38:01.818 -07 000000610 INF: FPGA: Xmit ZDACW 43928\n [Z Motor] 17-03-17 23:38:01.818 -07 000000547 INF: FPGA: Recv ZDACW 17-03-17 23:38:01.828 -07 000000610 INF: FPGA: 'ZDACW 43928' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 23:38:01.828 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:38:01.828 -07 000000475 INF: FPGA: Recv ZDACR 43928 17-03-17 23:38:01.838 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:01.838 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:38:01.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:01.988 -07 000000561 INF: FPGA: Recv ZSGSRD 40588 17-03-17 23:38:01.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:38:01.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:01.998 -07 000000438 INF: FPGA: Recv ZSGSRD 40587 17-03-17 23:38:02.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:02.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:02.008 -07 000000448 INF: FPGA: Recv ZSGSRD 40588 17-03-17 23:38:02.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:02.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:02.018 -07 000000433 INF: FPGA: Recv ZSGSRD 40589 17-03-17 23:38:02.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:02.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:02.028 -07 000000475 INF: FPGA: Recv ZSGSRD 40593 17-03-17 23:38:02.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:02.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:02.038 -07 000000618 INF: FPGA: Recv ZSGSRD 40590 17-03-17 23:38:02.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:02.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:02.048 -07 000000502 INF: FPGA: Recv ZSGSRD 40597 17-03-17 23:38:02.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:02.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:02.058 -07 000000448 INF: FPGA: Recv ZSGSRD 40590 17-03-17 23:38:02.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:02.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:02.068 -07 000000433 INF: FPGA: Recv ZSGSRD 40587 17-03-17 23:38:02.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:02.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:02.078 -07 000000475 INF: FPGA: Recv ZSGSRD 40589 17-03-17 23:38:02.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:02.088 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:38:02.088 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:38:02.088 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:38:02.088 -07 000000433 INF: FPGA: Recv ZPIEZORD 35691 17-03-17 23:38:02.098 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:02.098 -07 000000610 INF: Z Motor: Piezo is near 56.2 V (nominally 0 to 100 V), expect near 67.0 V, since DAC is at 6.703 V. Piezo Error = -10.8 V. 17-03-17 23:38:02.098 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -201.1 um, Read 10 ADC samples: Avg = 40590 (-200.1 uncal um), Error = 1.0 uncal um, Median = 40589 (-200.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 40587 (-200.1 uncal um), Max = 40597 (-200.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um) 17-03-17 23:38:02.098 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 40590, posNoise = 7, negNoise = 3 17-03-17 23:38:02.098 -07 000000610 INF: Z Motor: After move to -0.201089, error = 0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:38:02.098 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms) 17-03-17 23:38:02.098 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:38:02.098 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:38:02.098 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:38:02.098 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:38:02.098 -07 000000409 INF: Disarm and arm camera sensor 0: FullImageTriggered start. 17-03-17 23:38:02.098 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:38:02.098 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:38:02.098 -07 000000409 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start. 17-03-17 23:38:02.108 -07 000000409 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms. 17-03-17 23:38:02.108 -07 000000409 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start. 17-03-17 23:38:02.118 -07 000000409 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms. 17-03-17 23:38:02.118 -07 000000409 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 14 ms. 17-03-17 23:38:02.118 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera] 17-03-17 23:38:02.318 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 192 17-03-17 23:38:02.518 -07 000000482 INF: FPGA: Recv @CAMSNAP img rdy 392 17-03-17 23:38:02.518 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392 17-03-17 23:38:02.518 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start. 17-03-17 23:38:02.518 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1077874736, 0x0, 314322768) start. 17-03-17 23:38:02.708 -07 000000512 INF: FPGA: Recv @CAMSNAP 585 17-03-17 23:38:02.708 -07 000000623 INF: FPGA: Recv CAMSNAP 17-03-17 23:38:02.708 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 584 ms to get response, and 589 ms overall 17-03-17 23:38:03.108 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1077874736, 0x0, 314322768) end. Duration was 582 ms. 17-03-17 23:38:03.108 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:38:03.108 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms. 17-03-17 23:38:03.108 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 594 ms. 17-03-17 23:38:03.208 -07 000000610 INF: ComputeBrenner start 17-03-17 23:38:03.218 -07 000000610 INF: Image SNR check: start 17-03-17 23:38:03.228 -07 000000610 INF: Image SNR check: image is Dark [peak (Max-Min)=16.46] 17-03-17 23:38:03.228 -07 000000610 INF: Scanning Z-Position: -0.199089 17-03-17 23:38:03.228 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 43491, sync = True, waitForSettling = True) 17-03-17 23:38:03.228 -07 000000610 INF: Z Motor: Moving to -0.199089 mm, started at -0.201082 mm, distance = 1.99 um 17-03-17 23:38:03.228 -07 000000610 INF: FPGA: Xmit ZDACW 43491\n [Z Motor] 17-03-17 23:38:03.228 -07 000000433 INF: FPGA: Recv ZDACW 17-03-17 23:38:03.238 -07 000000610 INF: FPGA: 'ZDACW 43491' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:38:03.238 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:38:03.238 -07 000000576 INF: FPGA: Recv ZDACR 43491 17-03-17 23:38:03.248 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:03.248 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:38:03.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:03.398 -07 000000627 INF: FPGA: Recv ZSGSRD 40282 17-03-17 23:38:03.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:03.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:03.408 -07 000000502 INF: FPGA: Recv ZSGSRD 40283 17-03-17 23:38:03.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:03.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:03.418 -07 000000547 INF: FPGA: Recv ZSGSRD 40279 17-03-17 23:38:03.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:03.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:03.428 -07 000000433 INF: FPGA: Recv ZSGSRD 40279 17-03-17 23:38:03.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:03.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:03.438 -07 000000561 INF: FPGA: Recv ZSGSRD 40283 17-03-17 23:38:03.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:03.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:03.448 -07 000000541 INF: FPGA: Recv ZSGSRD 40279 17-03-17 23:38:03.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:03.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:03.458 -07 000000438 INF: FPGA: Recv ZSGSRD 40276 17-03-17 23:38:03.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:03.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:03.468 -07 000000448 INF: FPGA: Recv ZSGSRD 40275 17-03-17 23:38:03.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:03.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:03.478 -07 000000486 INF: FPGA: Recv ZSGSRD 40276 17-03-17 23:38:03.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:03.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:03.488 -07 000000502 INF: FPGA: Recv ZSGSRD 40282 17-03-17 23:38:03.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:03.498 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:38:03.498 -07 000000627 INF: FPGA: Recv ZPIEZORD 35296 17-03-17 23:38:03.508 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:03.508 -07 000000610 INF: Z Motor: Piezo is near 55.4 V (nominally 0 to 100 V), expect near 66.4 V, since DAC is at 6.636 V. Piezo Error = -11.0 V. 17-03-17 23:38:03.508 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -199.1 um, Read 10 ADC samples: Avg = 40279 (-198.1 uncal um), Error = 0.9 uncal um, Median = 40279 (-198.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 40275 (-198.1 uncal um), Max = 40283 (-198.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um) 17-03-17 23:38:03.508 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 40279, posNoise = 4, negNoise = 4 17-03-17 23:38:03.508 -07 000000610 INF: Z Motor: After move to -0.199089, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:38:03.508 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms) 17-03-17 23:38:03.508 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:38:03.508 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:38:03.508 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:38:03.508 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:38:03.508 -07 000000618 INF: Disarm and arm camera sensor 0: FullImageTriggered start. 17-03-17 23:38:03.508 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:38:03.508 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:38:03.508 -07 000000618 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start. 17-03-17 23:38:03.518 -07 000000618 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms. 17-03-17 23:38:03.518 -07 000000618 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start. 17-03-17 23:38:03.528 -07 000000618 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms. 17-03-17 23:38:03.528 -07 000000618 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms. 17-03-17 23:38:03.528 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera] 17-03-17 23:38:03.728 -07 000000433 INF: FPGA: Recv @CAMSNAP turning led on 192 17-03-17 23:38:03.928 -07 000000448 INF: FPGA: Recv @CAMSNAP img rdy 392 17-03-17 23:38:03.928 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392 17-03-17 23:38:03.928 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start. 17-03-17 23:38:03.928 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) start. 17-03-17 23:38:04.118 -07 000000561 INF: FPGA: Recv @CAMSNAP 585 17-03-17 23:38:04.118 -07 000000482 INF: FPGA: Recv CAMSNAP 17-03-17 23:38:04.118 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 585 ms to get response, and 589 ms overall 17-03-17 23:38:04.518 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) end. Duration was 587 ms. 17-03-17 23:38:04.518 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:38:04.518 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:38:04.518 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 592 ms. 17-03-17 23:38:04.618 -07 000000610 INF: ComputeBrenner start 17-03-17 23:38:04.628 -07 000000610 INF: Image SNR check: start 17-03-17 23:38:04.638 -07 000000610 INF: Image SNR check: image is Dark [peak (Max-Min)=16.70] 17-03-17 23:38:04.638 -07 000000610 INF: Scanning Z-Position: -0.197089 17-03-17 23:38:04.638 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 43054, sync = True, waitForSettling = True) 17-03-17 23:38:04.638 -07 000000610 INF: Z Motor: Moving to -0.197089 mm, started at -0.199084 mm, distance = 2.00 um 17-03-17 23:38:04.638 -07 000000610 INF: FPGA: Xmit ZDACW 43054\n [Z Motor] 17-03-17 23:38:04.638 -07 000000547 INF: FPGA: Recv ZDACW 17-03-17 23:38:04.648 -07 000000610 INF: FPGA: 'ZDACW 43054' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:38:04.648 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:38:04.648 -07 000000475 INF: FPGA: Recv ZDACR 43054 17-03-17 23:38:04.658 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:04.658 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:38:04.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:04.808 -07 000000623 INF: FPGA: Recv ZSGSRD 39965 17-03-17 23:38:04.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:38:04.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:04.818 -07 000000541 INF: FPGA: Recv ZSGSRD 39974 17-03-17 23:38:04.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:04.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:04.828 -07 000000433 INF: FPGA: Recv ZSGSRD 39967 17-03-17 23:38:04.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:04.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:04.838 -07 000000438 INF: FPGA: Recv ZSGSRD 39970 17-03-17 23:38:04.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:04.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:04.848 -07 000000475 INF: FPGA: Recv ZSGSRD 39965 17-03-17 23:38:04.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:04.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:04.858 -07 000000623 INF: FPGA: Recv ZSGSRD 39967 17-03-17 23:38:04.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:04.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:04.868 -07 000000541 INF: FPGA: Recv ZSGSRD 39974 17-03-17 23:38:04.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:38:04.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:04.878 -07 000000433 INF: FPGA: Recv ZSGSRD 39956 17-03-17 23:38:04.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:04.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:04.888 -07 000000438 INF: FPGA: Recv ZSGSRD 39969 17-03-17 23:38:04.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:04.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:04.898 -07 000000475 INF: FPGA: Recv ZSGSRD 39966 17-03-17 23:38:04.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:04.908 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:38:04.908 -07 000000459 INF: FPGA: Recv ZPIEZORD 34958 17-03-17 23:38:04.918 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:04.918 -07 000000610 INF: Z Motor: Piezo is near 54.7 V (nominally 0 to 100 V), expect near 65.7 V, since DAC is at 6.570 V. Piezo Error = -11.0 V. 17-03-17 23:38:04.918 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -197.1 um, Read 10 ADC samples: Avg = 39967 (-196.1 uncal um), Error = 0.9 uncal um, Median = 39967 (-196.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 39956 (-196.1 uncal um), Max = 39974 (-196.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 11 (0.1 uncal um) 17-03-17 23:38:04.918 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 39967, posNoise = 7, negNoise = 11 17-03-17 23:38:04.918 -07 000000610 INF: Z Motor: After move to -0.197089, error = 0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:38:04.918 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms) 17-03-17 23:38:04.918 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:38:04.918 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:38:04.918 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:38:04.918 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:38:04.918 -07 000000486 INF: Disarm and arm camera sensor 0: FullImageTriggered start. 17-03-17 23:38:04.918 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:38:04.918 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:38:04.918 -07 000000486 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start. 17-03-17 23:38:04.928 -07 000000486 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms. 17-03-17 23:38:04.928 -07 000000486 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start. 17-03-17 23:38:04.938 -07 000000486 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms. 17-03-17 23:38:04.938 -07 000000486 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 14 ms. 17-03-17 23:38:04.938 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera] 17-03-17 23:38:05.138 -07 000000433 INF: FPGA: Recv @CAMSNAP turning led on 192 17-03-17 23:38:05.338 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 392 17-03-17 23:38:05.338 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392 17-03-17 23:38:05.338 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start. 17-03-17 23:38:05.338 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1133147680, 0x0, 314322768) start. 17-03-17 23:38:05.528 -07 000000627 INF: FPGA: Recv @CAMSNAP 585 17-03-17 23:38:05.528 -07 000000475 INF: FPGA: Recv CAMSNAP 17-03-17 23:38:05.528 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 583 ms to get response, and 589 ms overall 17-03-17 23:38:05.918 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1133147680, 0x0, 314322768) end. Duration was 585 ms. 17-03-17 23:38:05.918 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:38:05.928 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:38:05.928 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 589 ms. 17-03-17 23:38:06.138 -07 000000610 INF: ComputeBrenner start 17-03-17 23:38:06.148 -07 000000610 INF: Image SNR check: start 17-03-17 23:38:06.158 -07 000000610 INF: Image SNR check: image is Dark [peak (Max-Min)=16.06] 17-03-17 23:38:06.158 -07 000000610 INF: Scanning Z-Position: -0.195089 17-03-17 23:38:06.158 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 42617, sync = True, waitForSettling = True) 17-03-17 23:38:06.158 -07 000000610 INF: Z Motor: Moving to -0.195088 mm, started at -0.197080 mm, distance = 1.99 um 17-03-17 23:38:06.168 -07 000000610 INF: FPGA: Xmit ZDACW 42617\n [Z Motor] 17-03-17 23:38:06.168 -07 000000409 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 4.02213, 17-03-17 23:38:06.168 -07 000000438 INF: FPGA: Recv ZDACW 17-03-17 23:38:06.178 -07 000000610 INF: FPGA: 'ZDACW 42617' command took 0 ms to send, 0 ms to get response, and 12 ms overall 17-03-17 23:38:06.188 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:38:06.188 -07 000000502 INF: FPGA: Recv ZDACR 42617 17-03-17 23:38:06.198 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-17 23:38:06.198 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:38:06.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:06.348 -07 000000561 INF: FPGA: Recv ZSGSRD 39656 17-03-17 23:38:06.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:38:06.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:06.358 -07 000000480 INF: FPGA: Recv ZSGSRD 39656 17-03-17 23:38:06.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:06.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:06.368 -07 000000512 INF: FPGA: Recv ZSGSRD 39653 17-03-17 23:38:06.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:06.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:06.378 -07 000000627 INF: FPGA: Recv ZSGSRD 39655 17-03-17 23:38:06.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:06.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:06.388 -07 000000502 INF: FPGA: Recv ZSGSRD 39661 17-03-17 23:38:06.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:06.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:06.398 -07 000000561 INF: FPGA: Recv ZSGSRD 39658 17-03-17 23:38:06.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:38:06.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:06.408 -07 000000438 INF: FPGA: Recv ZSGSRD 39658 17-03-17 23:38:06.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:06.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:06.418 -07 000000512 INF: FPGA: Recv ZSGSRD 39648 17-03-17 23:38:06.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:06.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:06.428 -07 000000627 INF: FPGA: Recv ZSGSRD 39652 17-03-17 23:38:06.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:06.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:06.438 -07 000000502 INF: FPGA: Recv ZSGSRD 39656 17-03-17 23:38:06.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:06.448 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:38:06.448 -07 000000486 INF: FPGA: Recv ZPIEZORD 34589 17-03-17 23:38:06.458 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:06.458 -07 000000610 INF: Z Motor: Piezo is near 53.9 V (nominally 0 to 100 V), expect near 65.0 V, since DAC is at 6.503 V. Piezo Error = -11.1 V. 17-03-17 23:38:06.458 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -195.1 um, Read 10 ADC samples: Avg = 39655 (-194.1 uncal um), Error = 0.9 uncal um, Median = 39656 (-194.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 39648 (-194.1 uncal um), Max = 39661 (-194.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um) 17-03-17 23:38:06.458 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 39655, posNoise = 6, negNoise = 7 17-03-17 23:38:06.458 -07 000000610 INF: Z Motor: After move to -0.195088, error = 0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:38:06.458 -07 000000610 INF: Z Motor: MoveAbsStepped took 293 ms) 17-03-17 23:38:06.458 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:38:06.458 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:38:06.458 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:38:06.458 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:38:06.458 -07 000000623 INF: Disarm and arm camera sensor 0: FullImageTriggered start. 17-03-17 23:38:06.458 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:38:06.458 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:38:06.458 -07 000000623 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start. 17-03-17 23:38:06.468 -07 000000623 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms. 17-03-17 23:38:06.468 -07 000000623 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start. 17-03-17 23:38:06.478 -07 000000623 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms. 17-03-17 23:38:06.478 -07 000000623 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms. 17-03-17 23:38:06.478 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera] 17-03-17 23:38:06.678 -07 000000475 INF: FPGA: Recv @CAMSNAP turning led on 192 17-03-17 23:38:06.878 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 392 17-03-17 23:38:06.878 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392 17-03-17 23:38:06.878 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start. 17-03-17 23:38:06.878 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) start. 17-03-17 23:38:07.068 -07 000000448 INF: FPGA: Recv @CAMSNAP 585 17-03-17 23:38:07.068 -07 000000618 INF: FPGA: Recv CAMSNAP 17-03-17 23:38:07.068 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 585 ms to get response, and 589 ms overall 17-03-17 23:38:07.088 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:38:07.458 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) end. Duration was 584 ms. 17-03-17 23:38:07.458 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:38:07.468 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:38:07.468 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 589 ms. 17-03-17 23:38:07.578 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:38:07.668 -07 000000610 INF: ComputeBrenner start 17-03-17 23:38:07.678 -07 000000610 INF: Image SNR check: start 17-03-17 23:38:07.688 -07 000000610 INF: Image SNR check: image is Dark [peak (Max-Min)=16.43] 17-03-17 23:38:07.688 -07 000000610 INF: Scanning Z-Position: -0.193089 17-03-17 23:38:07.688 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 42180, sync = True, waitForSettling = True) 17-03-17 23:38:07.688 -07 000000610 INF: Z Motor: Moving to -0.193088 mm, started at -0.195075 mm, distance = 1.99 um 17-03-17 23:38:07.688 -07 000000610 INF: FPGA: Xmit ZDACW 42180\n [Z Motor] 17-03-17 23:38:07.688 -07 000000541 INF: FPGA: Recv ZDACW 17-03-17 23:38:07.698 -07 000000610 INF: FPGA: 'ZDACW 42180' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:38:07.698 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:38:07.698 -07 000000480 INF: FPGA: Recv ZDACR 42180 17-03-17 23:38:07.708 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:07.708 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:38:07.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:07.858 -07 000000486 INF: FPGA: Recv ZSGSRD 39342 17-03-17 23:38:07.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:38:07.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:07.868 -07 000000576 INF: FPGA: Recv ZSGSRD 39342 17-03-17 23:38:07.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:07.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:07.878 -07 000000627 INF: FPGA: Recv ZSGSRD 39343 17-03-17 23:38:07.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:07.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:07.888 -07 000000623 INF: FPGA: Recv ZSGSRD 39347 17-03-17 23:38:07.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:07.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:07.898 -07 000000433 INF: FPGA: Recv ZSGSRD 39346 17-03-17 23:38:07.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:07.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:07.908 -07 000000502 INF: FPGA: Recv ZSGSRD 39341 17-03-17 23:38:07.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:07.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:07.918 -07 000000512 INF: FPGA: Recv ZSGSRD 39343 17-03-17 23:38:07.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:07.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:07.928 -07 000000627 INF: FPGA: Recv ZSGSRD 39346 17-03-17 23:38:07.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:07.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:07.938 -07 000000623 INF: FPGA: Recv ZSGSRD 39345 17-03-17 23:38:07.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:07.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:07.948 -07 000000448 INF: FPGA: Recv ZSGSRD 39339 17-03-17 23:38:07.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:07.958 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:38:07.958 -07 000000438 INF: FPGA: Recv ZPIEZORD 34241 17-03-17 23:38:07.968 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 1 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:07.968 -07 000000610 INF: Z Motor: Piezo is near 53.1 V (nominally 0 to 100 V), expect near 64.4 V, since DAC is at 6.436 V. Piezo Error = -11.2 V. 17-03-17 23:38:07.968 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -193.1 um, Read 10 ADC samples: Avg = 39343 (-192.1 uncal um), Error = 0.9 uncal um, Median = 39343 (-192.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 39339 (-192.1 uncal um), Max = 39347 (-192.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um) 17-03-17 23:38:07.968 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 39343, posNoise = 4, negNoise = 4 17-03-17 23:38:07.968 -07 000000610 INF: Z Motor: After move to -0.193088, error = 0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:38:07.968 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms) 17-03-17 23:38:07.968 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:38:07.968 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:38:07.968 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:38:07.968 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:38:07.968 -07 000000512 INF: Disarm and arm camera sensor 0: FullImageTriggered start. 17-03-17 23:38:07.968 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:38:07.968 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:38:07.968 -07 000000512 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start. 17-03-17 23:38:07.978 -07 000000512 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms. 17-03-17 23:38:07.978 -07 000000512 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start. 17-03-17 23:38:07.988 -07 000000512 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms. 17-03-17 23:38:07.988 -07 000000512 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms. 17-03-17 23:38:07.988 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera] 17-03-17 23:38:08.188 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 192 17-03-17 23:38:08.388 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 392 17-03-17 23:38:08.388 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392 17-03-17 23:38:08.388 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start. 17-03-17 23:38:08.388 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1077874736, 0x0, 314322768) start. 17-03-17 23:38:08.578 -07 000000502 INF: FPGA: Recv @CAMSNAP 585 17-03-17 23:38:08.578 -07 000000433 INF: FPGA: Recv CAMSNAP 17-03-17 23:38:08.578 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 584 ms to get response, and 589 ms overall 17-03-17 23:38:08.968 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1077874736, 0x0, 314322768) end. Duration was 584 ms. 17-03-17 23:38:08.968 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:38:08.978 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:38:08.978 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 589 ms. 17-03-17 23:38:09.078 -07 000000610 INF: ComputeBrenner start 17-03-17 23:38:09.088 -07 000000610 INF: Image SNR check: start 17-03-17 23:38:09.098 -07 000000610 INF: Image SNR check: image is Dark [peak (Max-Min)=16.58] 17-03-17 23:38:09.098 -07 000000610 INF: Scanning Z-Position: -0.191089 17-03-17 23:38:09.098 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 41743, sync = True, waitForSettling = True) 17-03-17 23:38:09.098 -07 000000610 INF: Z Motor: Moving to -0.191087 mm, started at -0.193071 mm, distance = 1.98 um 17-03-17 23:38:09.098 -07 000000610 INF: FPGA: Xmit ZDACW 41743\n [Z Motor] 17-03-17 23:38:09.098 -07 000000576 INF: FPGA: Recv ZDACW 17-03-17 23:38:09.108 -07 000000610 INF: FPGA: 'ZDACW 41743' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:38:09.108 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:38:09.108 -07 000000482 INF: FPGA: Recv ZDACR 41743 17-03-17 23:38:09.118 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:09.118 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:38:09.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:09.268 -07 000000480 INF: FPGA: Recv ZSGSRD 39038 17-03-17 23:38:09.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:38:09.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:09.278 -07 000000547 INF: FPGA: Recv ZSGSRD 39029 17-03-17 23:38:09.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:09.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:09.288 -07 000000627 INF: FPGA: Recv ZSGSRD 39030 17-03-17 23:38:09.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:09.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:09.298 -07 000000475 INF: FPGA: Recv ZSGSRD 39038 17-03-17 23:38:09.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:09.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:09.308 -07 000000482 INF: FPGA: Recv ZSGSRD 39033 17-03-17 23:38:09.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:09.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:09.318 -07 000000618 INF: FPGA: Recv ZSGSRD 39032 17-03-17 23:38:09.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:09.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:09.328 -07 000000480 INF: FPGA: Recv ZSGSRD 39033 17-03-17 23:38:09.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:09.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:09.338 -07 000000448 INF: FPGA: Recv ZSGSRD 39032 17-03-17 23:38:09.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:09.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:09.348 -07 000000561 INF: FPGA: Recv ZSGSRD 39028 17-03-17 23:38:09.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:09.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:09.358 -07 000000433 INF: FPGA: Recv ZSGSRD 39028 17-03-17 23:38:09.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:09.368 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:38:09.368 -07 000000618 INF: FPGA: Recv ZPIEZORD 33896 17-03-17 23:38:09.378 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:09.378 -07 000000610 INF: Z Motor: Piezo is near 52.4 V (nominally 0 to 100 V), expect near 63.7 V, since DAC is at 6.370 V. Piezo Error = -11.3 V. 17-03-17 23:38:09.378 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -191.1 um, Read 10 ADC samples: Avg = 39032 (-190.1 uncal um), Error = 0.9 uncal um, Median = 39032 (-190.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 39028 (-190.1 uncal um), Max = 39038 (-190.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um) 17-03-17 23:38:09.378 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 39032, posNoise = 6, negNoise = 4 17-03-17 23:38:09.378 -07 000000610 INF: Z Motor: After move to -0.191087, error = 0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:38:09.378 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms) 17-03-17 23:38:09.378 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:38:09.378 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:38:09.378 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:38:09.378 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:38:09.378 -07 000000433 INF: Disarm and arm camera sensor 0: FullImageTriggered start. 17-03-17 23:38:09.378 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:38:09.378 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:38:09.378 -07 000000433 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start. 17-03-17 23:38:09.388 -07 000000433 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms. 17-03-17 23:38:09.388 -07 000000433 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start. 17-03-17 23:38:09.398 -07 000000433 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms. 17-03-17 23:38:09.398 -07 000000433 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 17 ms. 17-03-17 23:38:09.398 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera] 17-03-17 23:38:09.598 -07 000000433 INF: FPGA: Recv @CAMSNAP turning led on 192 17-03-17 23:38:09.798 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 392 17-03-17 23:38:09.798 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392 17-03-17 23:38:09.798 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start. 17-03-17 23:38:09.798 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1129477224, 0x0, 314322768) start. 17-03-17 23:38:09.988 -07 000000433 INF: FPGA: Recv @CAMSNAP 585 17-03-17 23:38:09.988 -07 000000561 INF: FPGA: Recv CAMSNAP 17-03-17 23:38:09.988 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 586 ms to get response, and 589 ms overall 17-03-17 23:38:10.388 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1129477224, 0x0, 314322768) end. Duration was 587 ms. 17-03-17 23:38:10.388 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:38:10.388 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:38:10.388 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms. 17-03-17 23:38:10.698 -07 000000610 INF: ComputeBrenner start 17-03-17 23:38:10.708 -07 000000610 INF: Image SNR check: start 17-03-17 23:38:10.718 -07 000000610 INF: Image SNR check: image is Dark [peak (Max-Min)=16.40] 17-03-17 23:38:10.718 -07 000000610 INF: Scanning Z-Position: -0.189089 17-03-17 23:38:10.718 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 41306, sync = True, waitForSettling = True) 17-03-17 23:38:10.718 -07 000000610 INF: Z Motor: Moving to -0.189087 mm, started at -0.191073 mm, distance = 1.99 um 17-03-17 23:38:10.718 -07 000000610 INF: FPGA: Xmit ZDACW 41306\n [Z Motor] 17-03-17 23:38:10.718 -07 000000438 INF: FPGA: Recv ZDACW 17-03-17 23:38:10.728 -07 000000610 INF: FPGA: 'ZDACW 41306' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-17 23:38:10.728 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:38:10.728 -07 000000409 INF: FPGA: Recv ZDACR 41306 17-03-17 23:38:10.738 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:10.738 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:38:10.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:10.888 -07 000000618 INF: FPGA: Recv ZSGSRD 38719 17-03-17 23:38:10.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:38:10.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:10.898 -07 000000433 INF: FPGA: Recv ZSGSRD 38723 17-03-17 23:38:10.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:10.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:10.908 -07 000000627 INF: FPGA: Recv ZSGSRD 38717 17-03-17 23:38:10.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:10.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:10.918 -07 000000541 INF: FPGA: Recv ZSGSRD 38728 17-03-17 23:38:10.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:10.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:10.928 -07 000000547 INF: FPGA: Recv ZSGSRD 38721 17-03-17 23:38:10.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:10.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:10.938 -07 000000618 INF: FPGA: Recv ZSGSRD 38719 17-03-17 23:38:10.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:10.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:10.948 -07 000000482 INF: FPGA: Recv ZSGSRD 38718 17-03-17 23:38:10.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:10.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:10.958 -07 000000627 INF: FPGA: Recv ZSGSRD 38718 17-03-17 23:38:10.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:10.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:10.968 -07 000000438 INF: FPGA: Recv ZSGSRD 38721 17-03-17 23:38:10.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:10.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:10.978 -07 000000409 INF: FPGA: Recv ZSGSRD 38722 17-03-17 23:38:10.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:10.988 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:38:10.988 -07 000000480 INF: FPGA: Recv ZPIEZORD 33568 17-03-17 23:38:10.998 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:10.998 -07 000000610 INF: Z Motor: Piezo is near 51.7 V (nominally 0 to 100 V), expect near 63.0 V, since DAC is at 6.303 V. Piezo Error = -11.3 V. 17-03-17 23:38:10.998 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -189.1 um, Read 10 ADC samples: Avg = 38721 (-188.2 uncal um), Error = 0.9 uncal um, Median = 38720 (-188.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 38717 (-188.1 uncal um), Max = 38728 (-188.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um) 17-03-17 23:38:10.998 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 38721, posNoise = 7, negNoise = 4 17-03-17 23:38:10.998 -07 000000610 INF: Z Motor: After move to -0.189087, error = 0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:38:10.998 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms) 17-03-17 23:38:10.998 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:38:10.998 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:38:10.998 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:38:10.998 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:38:10.998 -07 000000409 INF: Disarm and arm camera sensor 0: FullImageTriggered start. 17-03-17 23:38:10.998 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:38:10.998 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:38:10.998 -07 000000409 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start. 17-03-17 23:38:11.008 -07 000000409 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms. 17-03-17 23:38:11.008 -07 000000409 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start. 17-03-17 23:38:11.018 -07 000000409 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms. 17-03-17 23:38:11.018 -07 000000409 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 14 ms. 17-03-17 23:38:11.018 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera] 17-03-17 23:38:11.218 -07 000000409 INF: FPGA: Recv @CAMSNAP turning led on 192 17-03-17 23:38:11.418 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 392 17-03-17 23:38:11.418 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392 17-03-17 23:38:11.418 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start. 17-03-17 23:38:11.418 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) start. 17-03-17 23:38:11.548 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 3.985358, 17-03-17 23:38:11.608 -07 000000459 INF: FPGA: Recv @CAMSNAP 585 17-03-17 23:38:11.608 -07 000000433 INF: FPGA: Recv CAMSNAP 17-03-17 23:38:11.608 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 583 ms to get response, and 589 ms overall 17-03-17 23:38:11.998 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) end. Duration was 586 ms. 17-03-17 23:38:11.998 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:38:12.008 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:38:12.008 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms. 17-03-17 23:38:12.088 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:38:12.098 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:38:12.108 -07 000000610 INF: ComputeBrenner start 17-03-17 23:38:12.118 -07 000000610 INF: Image SNR check: start 17-03-17 23:38:12.128 -07 000000610 INF: Image SNR check: image is Dark [peak (Max-Min)=16.82] 17-03-17 23:38:12.128 -07 000000610 INF: Scanning Z-Position: -0.187089 17-03-17 23:38:12.128 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 40870, sync = True, waitForSettling = True) 17-03-17 23:38:12.128 -07 000000610 INF: Z Motor: Moving to -0.187091 mm, started at -0.189075 mm, distance = 1.98 um 17-03-17 23:38:12.128 -07 000000610 INF: FPGA: Xmit ZDACW 40870\n [Z Motor] 17-03-17 23:38:12.128 -07 000000448 INF: FPGA: Recv ZDACW 17-03-17 23:38:12.138 -07 000000610 INF: FPGA: 'ZDACW 40870' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:38:12.138 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:38:12.138 -07 000000486 INF: FPGA: Recv ZDACR 40870 17-03-17 23:38:12.148 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:12.148 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:38:12.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:12.298 -07 000000618 INF: FPGA: Recv ZSGSRD 38414 17-03-17 23:38:12.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:38:12.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:12.308 -07 000000547 INF: FPGA: Recv ZSGSRD 38410 17-03-17 23:38:12.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:12.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:12.318 -07 000000482 INF: FPGA: Recv ZSGSRD 38408 17-03-17 23:38:12.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:12.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:12.328 -07 000000561 INF: FPGA: Recv ZSGSRD 38413 17-03-17 23:38:12.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:12.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:12.338 -07 000000623 INF: FPGA: Recv ZSGSRD 38414 17-03-17 23:38:12.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:12.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:12.348 -07 000000541 INF: FPGA: Recv ZSGSRD 38410 17-03-17 23:38:12.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:12.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:12.358 -07 000000502 INF: FPGA: Recv ZSGSRD 38410 17-03-17 23:38:12.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:12.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:12.368 -07 000000433 INF: FPGA: Recv ZSGSRD 38410 17-03-17 23:38:12.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:12.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:12.378 -07 000000623 INF: FPGA: Recv ZSGSRD 38413 17-03-17 23:38:12.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:38:12.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:12.388 -07 000000561 INF: FPGA: Recv ZSGSRD 38411 17-03-17 23:38:12.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:12.398 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:38:12.398 -07 000000448 INF: FPGA: Recv ZPIEZORD 33206 17-03-17 23:38:12.408 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:12.408 -07 000000610 INF: Z Motor: Piezo is near 50.9 V (nominally 0 to 100 V), expect near 62.4 V, since DAC is at 6.236 V. Piezo Error = -11.4 V. 17-03-17 23:38:12.408 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -187.1 um, Read 10 ADC samples: Avg = 38411 (-186.2 uncal um), Error = 0.9 uncal um, Median = 38410 (-186.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 38408 (-186.1 uncal um), Max = 38414 (-186.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um) 17-03-17 23:38:12.408 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 38411, posNoise = 3, negNoise = 3 17-03-17 23:38:12.408 -07 000000610 INF: Z Motor: After move to -0.187091, error = 0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:38:12.408 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms) 17-03-17 23:38:12.408 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:38:12.408 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:38:12.408 -07 000000409 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:38:12.408 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:38:12.408 -07 000000541 INF: Disarm and arm camera sensor 0: FullImageTriggered start. 17-03-17 23:38:12.408 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:38:12.408 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-17 23:38:12.408 -07 000000541 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start. 17-03-17 23:38:12.408 -07 000000541 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms. 17-03-17 23:38:12.408 -07 000000541 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start. 17-03-17 23:38:12.418 -07 000000541 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 9 ms. 17-03-17 23:38:12.418 -07 000000541 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 13 ms. 17-03-17 23:38:12.428 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera] 17-03-17 23:38:12.628 -07 000000433 INF: FPGA: Recv @CAMSNAP turning led on 192 17-03-17 23:38:12.828 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 392 17-03-17 23:38:12.828 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392 17-03-17 23:38:12.828 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start. 17-03-17 23:38:12.828 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1077874736, 0x0, 314322768) start. 17-03-17 23:38:13.018 -07 000000433 INF: FPGA: Recv @CAMSNAP 585 17-03-17 23:38:13.018 -07 000000547 INF: FPGA: Recv CAMSNAP 17-03-17 23:38:13.018 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 583 ms to get response, and 589 ms overall 17-03-17 23:38:13.408 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1077874736, 0x0, 314322768) end. Duration was 586 ms. 17-03-17 23:38:13.408 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:38:13.418 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:38:13.418 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms. 17-03-17 23:38:13.618 -07 000000610 INF: ComputeBrenner start 17-03-17 23:38:13.628 -07 000000610 INF: Image SNR check: start 17-03-17 23:38:13.638 -07 000000610 INF: Image SNR check: image is Dark [peak (Max-Min)=17.71] 17-03-17 23:38:13.638 -07 000000610 INF: Scanning Z-Position: -0.185089 17-03-17 23:38:13.638 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 40433, sync = True, waitForSettling = True) 17-03-17 23:38:13.638 -07 000000610 INF: Z Motor: Moving to -0.185090 mm, started at -0.187084 mm, distance = 1.99 um 17-03-17 23:38:13.638 -07 000000610 INF: FPGA: Xmit ZDACW 40433\n [Z Motor] 17-03-17 23:38:13.638 -07 000000459 INF: FPGA: Recv ZDACW 17-03-17 23:38:13.648 -07 000000610 INF: FPGA: 'ZDACW 40433' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:38:13.648 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:38:13.648 -07 000000547 INF: FPGA: Recv ZDACR 40433 17-03-17 23:38:13.658 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:13.658 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:38:13.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:13.808 -07 000000480 INF: FPGA: Recv ZSGSRD 38098 17-03-17 23:38:13.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:38:13.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:13.818 -07 000000486 INF: FPGA: Recv ZSGSRD 38101 17-03-17 23:38:13.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:13.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:13.828 -07 000000512 INF: FPGA: Recv ZSGSRD 38101 17-03-17 23:38:13.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:13.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:13.838 -07 000000448 INF: FPGA: Recv ZSGSRD 38101 17-03-17 23:38:13.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:13.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:13.848 -07 000000433 INF: FPGA: Recv ZSGSRD 38099 17-03-17 23:38:13.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:13.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:13.858 -07 000000576 INF: FPGA: Recv ZSGSRD 38102 17-03-17 23:38:13.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:13.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:13.868 -07 000000541 INF: FPGA: Recv ZSGSRD 38106 17-03-17 23:38:13.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:13.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:13.878 -07 000000475 INF: FPGA: Recv ZSGSRD 38102 17-03-17 23:38:13.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:13.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:13.888 -07 000000502 INF: FPGA: Recv ZSGSRD 38103 17-03-17 23:38:13.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:13.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:13.898 -07 000000409 INF: FPGA: Recv ZSGSRD 38101 17-03-17 23:38:13.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:13.908 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:38:13.908 -07 000000576 INF: FPGA: Recv ZPIEZORD 32891 17-03-17 23:38:13.918 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:13.918 -07 000000610 INF: Z Motor: Piezo is near 50.3 V (nominally 0 to 100 V), expect near 61.7 V, since DAC is at 6.170 V. Piezo Error = -11.4 V. 17-03-17 23:38:13.918 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -185.1 um, Read 10 ADC samples: Avg = 38101 (-184.2 uncal um), Error = 0.9 uncal um, Median = 38101 (-184.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 38098 (-184.2 uncal um), Max = 38106 (-184.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um) 17-03-17 23:38:13.918 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 38101, posNoise = 5, negNoise = 3 17-03-17 23:38:13.918 -07 000000610 INF: Z Motor: After move to -0.185090, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:38:13.918 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms) 17-03-17 23:38:13.918 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:38:13.918 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:38:13.918 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:38:13.918 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:38:13.918 -07 000000409 INF: Disarm and arm camera sensor 0: FullImageTriggered start. 17-03-17 23:38:13.918 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:38:13.918 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:38:13.918 -07 000000409 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start. 17-03-17 23:38:13.918 -07 000000409 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms. 17-03-17 23:38:13.918 -07 000000409 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start. 17-03-17 23:38:13.928 -07 000000409 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 6 ms. 17-03-17 23:38:13.928 -07 000000409 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 10 ms. 17-03-17 23:38:13.928 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera] 17-03-17 23:38:14.128 -07 000000409 INF: FPGA: Recv @CAMSNAP turning led on 192 17-03-17 23:38:14.328 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 392 17-03-17 23:38:14.328 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392 17-03-17 23:38:14.328 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start. 17-03-17 23:38:14.328 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1129477224, 0x0, 314322768) start. 17-03-17 23:38:14.518 -07 000000618 INF: FPGA: Recv @CAMSNAP 585 17-03-17 23:38:14.518 -07 000000438 INF: FPGA: Recv CAMSNAP 17-03-17 23:38:14.518 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 578 ms to get response, and 589 ms overall 17-03-17 23:38:14.918 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1129477224, 0x0, 314322768) end. Duration was 587 ms. 17-03-17 23:38:14.918 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:38:14.918 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:38:14.918 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 592 ms. 17-03-17 23:38:15.128 -07 000000610 INF: ComputeBrenner start 17-03-17 23:38:15.138 -07 000000610 INF: Image SNR check: start 17-03-17 23:38:15.148 -07 000000610 INF: Image SNR check: image is Dark [peak (Max-Min)=17.97] 17-03-17 23:38:15.148 -07 000000610 INF: Scanning Z-Position: -0.183089 17-03-17 23:38:15.148 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 39996, sync = True, waitForSettling = True) 17-03-17 23:38:15.148 -07 000000610 INF: Z Motor: Moving to -0.183090 mm, started at -0.185092 mm, distance = 2.00 um 17-03-17 23:38:15.148 -07 000000610 INF: FPGA: Xmit ZDACW 39996\n [Z Motor] 17-03-17 23:38:15.148 -07 000000623 INF: FPGA: Recv ZDACW 17-03-17 23:38:15.158 -07 000000610 INF: FPGA: 'ZDACW 39996' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-17 23:38:15.158 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:38:15.158 -07 000000475 INF: FPGA: Recv ZDACR 39996 17-03-17 23:38:15.168 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:15.168 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:38:15.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:15.318 -07 000000438 INF: FPGA: Recv ZSGSRD 37796 17-03-17 23:38:15.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:38:15.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:15.328 -07 000000448 INF: FPGA: Recv ZSGSRD 37792 17-03-17 23:38:15.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:15.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:15.338 -07 000000480 INF: FPGA: Recv ZSGSRD 37785 17-03-17 23:38:15.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:15.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:15.348 -07 000000576 INF: FPGA: Recv ZSGSRD 37791 17-03-17 23:38:15.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:15.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:15.358 -07 000000502 INF: FPGA: Recv ZSGSRD 37794 17-03-17 23:38:15.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:15.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:15.368 -07 000000459 INF: FPGA: Recv ZSGSRD 37791 17-03-17 23:38:15.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:15.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:15.378 -07 000000512 INF: FPGA: Recv ZSGSRD 37792 17-03-17 23:38:15.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:15.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:15.388 -07 000000480 INF: FPGA: Recv ZSGSRD 37788 17-03-17 23:38:15.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:15.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:15.398 -07 000000561 INF: FPGA: Recv ZSGSRD 37793 17-03-17 23:38:15.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:15.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:15.408 -07 000000502 INF: FPGA: Recv ZSGSRD 37789 17-03-17 23:38:15.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:15.418 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:38:15.418 -07 000000623 INF: FPGA: Recv ZPIEZORD 32551 17-03-17 23:38:15.428 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:15.428 -07 000000610 INF: Z Motor: Piezo is near 49.5 V (nominally 0 to 100 V), expect near 61.0 V, since DAC is at 6.103 V. Piezo Error = -11.5 V. 17-03-17 23:38:15.428 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -183.1 um, Read 10 ADC samples: Avg = 37791 (-182.2 uncal um), Error = 0.9 uncal um, Median = 37792 (-182.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 37785 (-182.2 uncal um), Max = 37796 (-182.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um) 17-03-17 23:38:15.428 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37791, posNoise = 5, negNoise = 6 17-03-17 23:38:15.428 -07 000000610 INF: Z Motor: After move to -0.183090, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:38:15.428 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms) 17-03-17 23:38:15.428 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:38:15.428 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:38:15.428 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:38:15.428 -07 000000475 INF: Disarm and arm camera sensor 0: FullImageTriggered start. 17-03-17 23:38:15.428 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:38:15.428 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:38:15.428 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-17 23:38:15.428 -07 000000475 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start. 17-03-17 23:38:15.438 -07 000000475 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms. 17-03-17 23:38:15.438 -07 000000475 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start. 17-03-17 23:38:15.448 -07 000000475 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 9 ms. 17-03-17 23:38:15.448 -07 000000475 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 13 ms. 17-03-17 23:38:15.448 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera] 17-03-17 23:38:15.648 -07 000000475 INF: FPGA: Recv @CAMSNAP turning led on 192 17-03-17 23:38:15.848 -07 000000547 INF: FPGA: Recv @CAMSNAP img rdy 392 17-03-17 23:38:15.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392 17-03-17 23:38:15.848 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start. 17-03-17 23:38:15.848 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) start. 17-03-17 23:38:16.038 -07 000000433 INF: FPGA: Recv @CAMSNAP 585 17-03-17 23:38:16.038 -07 000000448 INF: FPGA: Recv CAMSNAP 17-03-17 23:38:16.038 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 583 ms to get response, and 589 ms overall 17-03-17 23:38:16.428 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) end. Duration was 587 ms. 17-03-17 23:38:16.428 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:38:16.438 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:38:16.438 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 592 ms. 17-03-17 23:38:16.538 -07 000000610 INF: ComputeBrenner start 17-03-17 23:38:16.548 -07 000000610 INF: Image SNR check: start 17-03-17 23:38:16.558 -07 000000610 INF: Image SNR check: image is Dark [peak (Max-Min)=18.71] 17-03-17 23:38:16.558 -07 000000610 INF: Scanning Z-Position: -0.181089 17-03-17 23:38:16.558 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 39559, sync = True, waitForSettling = True) 17-03-17 23:38:16.558 -07 000000610 INF: Z Motor: Moving to -0.181089 mm, started at -0.183101 mm, distance = 2.01 um 17-03-17 23:38:16.558 -07 000000610 INF: FPGA: Xmit ZDACW 39559\n [Z Motor] 17-03-17 23:38:16.558 -07 000000433 INF: FPGA: Recv ZDACW 17-03-17 23:38:16.568 -07 000000610 INF: FPGA: 'ZDACW 39559' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:38:16.568 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:38:16.568 -07 000000438 INF: FPGA: Recv ZDACR 39559 17-03-17 23:38:16.578 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:16.578 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:38:16.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:16.728 -07 000000502 INF: FPGA: Recv ZSGSRD 37477 17-03-17 23:38:16.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:38:16.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:16.738 -07 000000433 INF: FPGA: Recv ZSGSRD 37485 17-03-17 23:38:16.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:16.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:16.748 -07 000000438 INF: FPGA: Recv ZSGSRD 37479 17-03-17 23:38:16.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:16.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:16.758 -07 000000547 INF: FPGA: Recv ZSGSRD 37480 17-03-17 23:38:16.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:16.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:16.768 -07 000000627 INF: FPGA: Recv ZSGSRD 37475 17-03-17 23:38:16.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:16.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:16.778 -07 000000502 INF: FPGA: Recv ZSGSRD 37479 17-03-17 23:38:16.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:16.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:16.788 -07 000000433 INF: FPGA: Recv ZSGSRD 37479 17-03-17 23:38:16.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:16.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:16.798 -07 000000482 INF: FPGA: Recv ZSGSRD 37475 17-03-17 23:38:16.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:16.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:16.808 -07 000000561 INF: FPGA: Recv ZSGSRD 37476 17-03-17 23:38:16.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:16.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:16.818 -07 000000547 INF: FPGA: Recv ZSGSRD 37479 17-03-17 23:38:16.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:16.828 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:38:16.828 -07 000000448 INF: FPGA: Recv ZPIEZORD 32207 17-03-17 23:38:16.838 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:16.838 -07 000000610 INF: Z Motor: Piezo is near 48.8 V (nominally 0 to 100 V), expect near 60.4 V, since DAC is at 6.036 V. Piezo Error = -11.6 V. 17-03-17 23:38:16.838 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -181.1 um, Read 10 ADC samples: Avg = 37478 (-180.2 uncal um), Error = 0.9 uncal um, Median = 37479 (-180.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 37475 (-180.2 uncal um), Max = 37485 (-180.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um) 17-03-17 23:38:16.838 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37478, posNoise = 7, negNoise = 3 17-03-17 23:38:16.838 -07 000000610 INF: Z Motor: After move to -0.181089, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:38:16.838 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms) 17-03-17 23:38:16.838 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:38:16.838 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:38:16.838 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:38:16.838 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:38:16.838 -07 000000618 INF: Disarm and arm camera sensor 0: FullImageTriggered start. 17-03-17 23:38:16.838 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:38:16.838 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:38:16.838 -07 000000618 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start. 17-03-17 23:38:16.848 -07 000000618 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms. 17-03-17 23:38:16.848 -07 000000618 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start. 17-03-17 23:38:16.858 -07 000000618 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms. 17-03-17 23:38:16.858 -07 000000618 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms. 17-03-17 23:38:16.858 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera] 17-03-17 23:38:16.908 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 3.985358, 17-03-17 23:38:17.058 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 192 17-03-17 23:38:17.088 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:38:17.088 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:38:17.258 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 392 17-03-17 23:38:17.258 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392 17-03-17 23:38:17.258 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start. 17-03-17 23:38:17.258 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1077874736, 0x0, 314322768) start. 17-03-17 23:38:17.448 -07 000000618 INF: FPGA: Recv @CAMSNAP 585 17-03-17 23:38:17.448 -07 000000627 INF: FPGA: Recv CAMSNAP 17-03-17 23:38:17.448 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 585 ms to get response, and 589 ms overall 17-03-17 23:38:17.848 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1077874736, 0x0, 314322768) end. Duration was 585 ms. 17-03-17 23:38:17.848 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:38:17.848 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:38:17.848 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 590 ms. 17-03-17 23:38:17.948 -07 000000610 INF: ComputeBrenner start 17-03-17 23:38:17.958 -07 000000610 INF: Image SNR check: start 17-03-17 23:38:17.968 -07 000000610 INF: Image SNR check: image is Dark [peak (Max-Min)=19.58] 17-03-17 23:38:17.968 -07 000000610 INF: Scanning Z-Position: -0.179089 17-03-17 23:38:17.968 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 39122, sync = True, waitForSettling = True) 17-03-17 23:38:17.968 -07 000000610 INF: Z Motor: Moving to -0.179089 mm, started at -0.181090 mm, distance = 2.00 um 17-03-17 23:38:17.968 -07 000000610 INF: FPGA: Xmit ZDACW 39122\n [Z Motor] 17-03-17 23:38:17.968 -07 000000480 INF: FPGA: Recv ZDACW 17-03-17 23:38:17.978 -07 000000610 INF: FPGA: 'ZDACW 39122' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 23:38:17.978 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:38:17.978 -07 000000561 INF: FPGA: Recv ZDACR 39122 17-03-17 23:38:17.988 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:17.988 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:38:18.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:18.138 -07 000000475 INF: FPGA: Recv ZSGSRD 37168 17-03-17 23:38:18.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:38:18.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:18.148 -07 000000623 INF: FPGA: Recv ZSGSRD 37165 17-03-17 23:38:18.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:18.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:18.158 -07 000000618 INF: FPGA: Recv ZSGSRD 37166 17-03-17 23:38:18.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:18.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:18.168 -07 000000541 INF: FPGA: Recv ZSGSRD 37165 17-03-17 23:38:18.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:18.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:18.178 -07 000000448 INF: FPGA: Recv ZSGSRD 37169 17-03-17 23:38:18.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:38:18.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:18.188 -07 000000482 INF: FPGA: Recv ZSGSRD 37171 17-03-17 23:38:18.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:18.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:18.198 -07 000000618 INF: FPGA: Recv ZSGSRD 37173 17-03-17 23:38:18.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:18.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:18.208 -07 000000541 INF: FPGA: Recv ZSGSRD 37167 17-03-17 23:38:18.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:18.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:18.218 -07 000000459 INF: FPGA: Recv ZSGSRD 37167 17-03-17 23:38:18.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:18.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:18.228 -07 000000512 INF: FPGA: Recv ZSGSRD 37165 17-03-17 23:38:18.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:18.238 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:38:18.238 -07 000000502 INF: FPGA: Recv ZPIEZORD 31898 17-03-17 23:38:18.248 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:18.248 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 59.7 V, since DAC is at 5.970 V. Piezo Error = -11.6 V. 17-03-17 23:38:18.248 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.1 um, Read 10 ADC samples: Avg = 37168 (-178.2 uncal um), Error = 0.9 uncal um, Median = 37167 (-178.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 37165 (-178.2 uncal um), Max = 37173 (-178.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um) 17-03-17 23:38:18.248 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37168, posNoise = 5, negNoise = 3 17-03-17 23:38:18.248 -07 000000610 INF: Z Motor: After move to -0.179089, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:38:18.248 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms) 17-03-17 23:38:18.248 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:38:18.248 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:38:18.248 -07 000000409 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:38:18.248 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:38:18.248 -07 000000512 INF: Disarm and arm camera sensor 0: FullImageTriggered start. 17-03-17 23:38:18.248 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:38:18.248 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:38:18.248 -07 000000512 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start. 17-03-17 23:38:18.258 -07 000000512 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms. 17-03-17 23:38:18.258 -07 000000512 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start. 17-03-17 23:38:18.268 -07 000000512 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms. 17-03-17 23:38:18.268 -07 000000512 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms. 17-03-17 23:38:18.268 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera] 17-03-17 23:38:18.468 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 192 17-03-17 23:38:18.668 -07 000000486 INF: FPGA: Recv @CAMSNAP img rdy 392 17-03-17 23:38:18.668 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392 17-03-17 23:38:18.668 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start. 17-03-17 23:38:18.668 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1129477224, 0x0, 314322768) start. 17-03-17 23:38:18.858 -07 000000561 INF: FPGA: Recv @CAMSNAP 585 17-03-17 23:38:18.858 -07 000000541 INF: FPGA: Recv CAMSNAP 17-03-17 23:38:18.858 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 583 ms to get response, and 589 ms overall 17-03-17 23:38:19.248 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1129477224, 0x0, 314322768) end. Duration was 587 ms. 17-03-17 23:38:19.258 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:38:19.258 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:38:19.258 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 592 ms. 17-03-17 23:38:19.568 -07 000000610 INF: ComputeBrenner start 17-03-17 23:38:19.578 -07 000000610 INF: Image SNR check: start 17-03-17 23:38:19.588 -07 000000610 INF: Image SNR check: image is Dark [peak (Max-Min)=19.62] 17-03-17 23:38:19.588 -07 000000610 INF: Scanning Z-Position: -0.177089 17-03-17 23:38:19.588 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 38685, sync = True, waitForSettling = True) 17-03-17 23:38:19.588 -07 000000610 INF: Z Motor: Moving to -0.177089 mm, started at -0.179098 mm, distance = 2.01 um 17-03-17 23:38:19.588 -07 000000610 INF: FPGA: Xmit ZDACW 38685\n [Z Motor] 17-03-17 23:38:19.588 -07 000000433 INF: FPGA: Recv ZDACW 17-03-17 23:38:19.598 -07 000000610 INF: FPGA: 'ZDACW 38685' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-17 23:38:19.598 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:38:19.598 -07 000000512 INF: FPGA: Recv ZDACR 38685 17-03-17 23:38:19.608 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:19.608 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:38:19.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:19.758 -07 000000448 INF: FPGA: Recv ZSGSRD 36856 17-03-17 23:38:19.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:38:19.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:19.768 -07 000000627 INF: FPGA: Recv ZSGSRD 36858 17-03-17 23:38:19.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:19.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:19.778 -07 000000576 INF: FPGA: Recv ZSGSRD 36854 17-03-17 23:38:19.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:19.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:19.788 -07 000000541 INF: FPGA: Recv ZSGSRD 36851 17-03-17 23:38:19.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:19.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:19.798 -07 000000438 INF: FPGA: Recv ZSGSRD 36859 17-03-17 23:38:19.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:19.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:19.808 -07 000000482 INF: FPGA: Recv ZSGSRD 36860 17-03-17 23:38:19.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:19.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:19.818 -07 000000618 INF: FPGA: Recv ZSGSRD 36857 17-03-17 23:38:19.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:19.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:19.828 -07 000000459 INF: FPGA: Recv ZSGSRD 36852 17-03-17 23:38:19.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:19.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:19.838 -07 000000576 INF: FPGA: Recv ZSGSRD 36856 17-03-17 23:38:19.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:19.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:19.848 -07 000000475 INF: FPGA: Recv ZSGSRD 36862 17-03-17 23:38:19.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:19.858 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:38:19.858 -07 000000486 INF: FPGA: Recv ZPIEZORD 31499 17-03-17 23:38:19.868 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:19.868 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.903 V. Piezo Error = -11.7 V. 17-03-17 23:38:19.868 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.1 um, Read 10 ADC samples: Avg = 36856 (-176.2 uncal um), Error = 0.9 uncal um, Median = 36856 (-176.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36851 (-176.2 uncal um), Max = 36862 (-176.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-17 23:38:19.868 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36856, posNoise = 6, negNoise = 5 17-03-17 23:38:19.868 -07 000000610 INF: Z Motor: After move to -0.177089, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:38:19.868 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms) 17-03-17 23:38:19.868 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:38:19.868 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:38:19.868 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:38:19.868 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:38:19.868 -07 000000433 INF: Disarm and arm camera sensor 0: FullImageTriggered start. 17-03-17 23:38:19.868 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:38:19.868 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:38:19.868 -07 000000433 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start. 17-03-17 23:38:19.878 -07 000000433 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms. 17-03-17 23:38:19.878 -07 000000433 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start. 17-03-17 23:38:19.888 -07 000000433 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 8 ms. 17-03-17 23:38:19.888 -07 000000433 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 13 ms. 17-03-17 23:38:19.888 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera] 17-03-17 23:38:20.088 -07 000000433 INF: FPGA: Recv @CAMSNAP turning led on 192 17-03-17 23:38:20.288 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 392 17-03-17 23:38:20.288 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392 17-03-17 23:38:20.288 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start. 17-03-17 23:38:20.288 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) start. 17-03-17 23:38:20.478 -07 000000438 INF: FPGA: Recv @CAMSNAP 585 17-03-17 23:38:20.478 -07 000000627 INF: FPGA: Recv CAMSNAP 17-03-17 23:38:20.478 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 582 ms to get response, and 589 ms overall 17-03-17 23:38:20.868 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) end. Duration was 587 ms. 17-03-17 23:38:20.868 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:38:20.878 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:38:20.878 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 592 ms. 17-03-17 23:38:20.978 -07 000000610 INF: ComputeBrenner start 17-03-17 23:38:20.988 -07 000000610 INF: Image SNR check: start 17-03-17 23:38:20.998 -07 000000610 INF: Image SNR check: image is Faint [peak (Max-Min)=21.24] 17-03-17 23:38:20.998 -07 000000610 INF: Scanning Z-Position: -0.175089 17-03-17 23:38:20.998 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 38248, sync = True, waitForSettling = True) 17-03-17 23:38:20.998 -07 000000610 INF: Z Motor: Moving to -0.175088 mm, started at -0.177094 mm, distance = 2.01 um 17-03-17 23:38:20.998 -07 000000610 INF: FPGA: Xmit ZDACW 38248\n [Z Motor] 17-03-17 23:38:20.998 -07 000000502 INF: FPGA: Recv ZDACW 17-03-17 23:38:21.008 -07 000000610 INF: FPGA: 'ZDACW 38248' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:38:21.008 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:38:21.008 -07 000000627 INF: FPGA: Recv ZDACR 38248 17-03-17 23:38:21.018 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:21.018 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:38:21.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:21.168 -07 000000475 INF: FPGA: Recv ZSGSRD 36538 17-03-17 23:38:21.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:38:21.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:21.178 -07 000000480 INF: FPGA: Recv ZSGSRD 36548 17-03-17 23:38:21.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:21.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:21.188 -07 000000482 INF: FPGA: Recv ZSGSRD 36539 17-03-17 23:38:21.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:21.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:21.198 -07 000000486 INF: FPGA: Recv ZSGSRD 36546 17-03-17 23:38:21.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:21.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:21.208 -07 000000512 INF: FPGA: Recv ZSGSRD 36543 17-03-17 23:38:21.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:21.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:21.218 -07 000000475 INF: FPGA: Recv ZSGSRD 36547 17-03-17 23:38:21.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:21.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:21.238 -07 000000627 INF: FPGA: Recv ZSGSRD 36548 17-03-17 23:38:21.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 5 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:38:21.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:21.248 -07 000000576 INF: FPGA: Recv ZSGSRD 36552 17-03-17 23:38:21.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:21.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:21.258 -07 000000448 INF: FPGA: Recv ZSGSRD 36544 17-03-17 23:38:21.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:21.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:21.268 -07 000000409 INF: FPGA: Recv ZSGSRD 36549 17-03-17 23:38:21.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:21.278 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:38:21.278 -07 000000433 INF: FPGA: Recv ZPIEZORD 31262 17-03-17 23:38:21.288 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:21.288 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.836 V. Piezo Error = -11.6 V. 17-03-17 23:38:21.288 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.1 um, Read 10 ADC samples: Avg = 36545 (-174.2 uncal um), Error = 0.9 uncal um, Median = 36546 (-174.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 36538 (-174.2 uncal um), Max = 36552 (-174.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um) 17-03-17 23:38:21.288 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36545, posNoise = 7, negNoise = 7 17-03-17 23:38:21.288 -07 000000610 INF: Z Motor: After move to -0.175088, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:38:21.288 -07 000000610 INF: Z Motor: MoveAbsStepped took 288 ms) 17-03-17 23:38:21.288 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:38:21.288 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:38:21.288 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:38:21.288 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:38:21.288 -07 000000475 INF: Disarm and arm camera sensor 0: FullImageTriggered start. 17-03-17 23:38:21.288 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:38:21.288 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:38:21.288 -07 000000475 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start. 17-03-17 23:38:21.298 -07 000000475 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms. 17-03-17 23:38:21.298 -07 000000475 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start. 17-03-17 23:38:21.308 -07 000000475 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms. 17-03-17 23:38:21.308 -07 000000475 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 14 ms. 17-03-17 23:38:21.308 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera] 17-03-17 23:38:21.508 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 194 17-03-17 23:38:21.708 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 394 17-03-17 23:38:21.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 394 17-03-17 23:38:21.708 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start. 17-03-17 23:38:21.708 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1077874736, 0x0, 314322768) start. 17-03-17 23:38:21.898 -07 000000561 INF: FPGA: Recv @CAMSNAP 585 17-03-17 23:38:21.898 -07 000000459 INF: FPGA: Recv CAMSNAP 17-03-17 23:38:21.898 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 583 ms to get response, and 589 ms overall 17-03-17 23:38:22.088 -07 000000409 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:38:22.268 -07 000000409 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 4.003063, 17-03-17 23:38:22.288 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1077874736, 0x0, 314322768) end. Duration was 585 ms. 17-03-17 23:38:22.288 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:38:22.298 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:38:22.298 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 590 ms. 17-03-17 23:38:22.388 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:38:22.398 -07 000000610 INF: ComputeBrenner start 17-03-17 23:38:22.408 -07 000000610 INF: Image SNR check: start 17-03-17 23:38:22.418 -07 000000610 INF: Image SNR check: image is Faint [peak (Max-Min)=30.66] 17-03-17 23:38:22.418 -07 000000610 INF: Scanning Z-Position: -0.173089 17-03-17 23:38:22.418 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37811, sync = True, waitForSettling = True) 17-03-17 23:38:22.418 -07 000000610 INF: Z Motor: Moving to -0.173088 mm, started at -0.175096 mm, distance = 2.01 um 17-03-17 23:38:22.418 -07 000000610 INF: FPGA: Xmit ZDACW 37811\n [Z Motor] 17-03-17 23:38:22.418 -07 000000576 INF: FPGA: Recv ZDACW 17-03-17 23:38:22.428 -07 000000610 INF: FPGA: 'ZDACW 37811' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 23:38:22.428 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:38:22.428 -07 000000618 INF: FPGA: Recv ZDACR 37811 17-03-17 23:38:22.438 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:22.438 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:38:22.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:22.588 -07 000000512 INF: FPGA: Recv ZSGSRD 36233 17-03-17 23:38:22.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:38:22.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:22.598 -07 000000459 INF: FPGA: Recv ZSGSRD 36239 17-03-17 23:38:22.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:22.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:22.608 -07 000000486 INF: FPGA: Recv ZSGSRD 36232 17-03-17 23:38:22.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:22.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:22.618 -07 000000480 INF: FPGA: Recv ZSGSRD 36230 17-03-17 23:38:22.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:22.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:22.628 -07 000000576 INF: FPGA: Recv ZSGSRD 36239 17-03-17 23:38:22.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:22.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:22.638 -07 000000482 INF: FPGA: Recv ZSGSRD 36238 17-03-17 23:38:22.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:22.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:22.648 -07 000000433 INF: FPGA: Recv ZSGSRD 36233 17-03-17 23:38:22.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:22.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:22.658 -07 000000438 INF: FPGA: Recv ZSGSRD 36231 17-03-17 23:38:22.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:22.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:22.668 -07 000000480 INF: FPGA: Recv ZSGSRD 36236 17-03-17 23:38:22.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:22.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:22.678 -07 000000541 INF: FPGA: Recv ZSGSRD 36238 17-03-17 23:38:22.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:22.688 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:38:22.688 -07 000000618 INF: FPGA: Recv ZPIEZORD 30929 17-03-17 23:38:22.698 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:22.698 -07 000000610 INF: Z Motor: Piezo is near 46.1 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.770 V. Piezo Error = -11.6 V. 17-03-17 23:38:22.698 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.1 um, Read 10 ADC samples: Avg = 36235 (-172.2 uncal um), Error = 0.9 uncal um, Median = 36234 (-172.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36230 (-172.2 uncal um), Max = 36239 (-172.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-17 23:38:22.698 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36235, posNoise = 4, negNoise = 5 17-03-17 23:38:22.698 -07 000000610 INF: Z Motor: After move to -0.173088, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:38:22.698 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms) 17-03-17 23:38:22.698 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:38:22.698 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:38:22.698 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:38:22.698 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:38:22.698 -07 000000475 INF: Disarm and arm camera sensor 0: FullImageTriggered start. 17-03-17 23:38:22.698 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:38:22.698 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:38:22.698 -07 000000475 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start. 17-03-17 23:38:22.708 -07 000000475 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 4 ms. 17-03-17 23:38:22.708 -07 000000475 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start. 17-03-17 23:38:22.718 -07 000000475 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 9 ms. 17-03-17 23:38:22.718 -07 000000475 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms. 17-03-17 23:38:22.738 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera] 17-03-17 23:38:22.928 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 192 17-03-17 23:38:23.128 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 392 17-03-17 23:38:23.128 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392 17-03-17 23:38:23.128 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start. 17-03-17 23:38:23.128 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1129477224, 0x0, 314322768) start. 17-03-17 23:38:23.318 -07 000000512 INF: FPGA: Recv @CAMSNAP 585 17-03-17 23:38:23.328 -07 000000627 INF: FPGA: Recv CAMSNAP 17-03-17 23:38:23.328 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 580 ms to get response, and 605 ms overall 17-03-17 23:38:23.718 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1129477224, 0x0, 314322768) end. Duration was 586 ms. 17-03-17 23:38:23.718 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:38:23.718 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:38:23.718 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms. 17-03-17 23:38:23.938 -07 000000610 INF: ComputeBrenner start 17-03-17 23:38:23.948 -07 000000610 INF: Image SNR check: start 17-03-17 23:38:23.958 -07 000000610 INF: Image SNR check: image is Faint [peak (Max-Min)=35.21] 17-03-17 23:38:23.958 -07 000000610 INF: Scanning Z-Position: -0.171089 17-03-17 23:38:23.958 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37374, sync = True, waitForSettling = True) 17-03-17 23:38:23.958 -07 000000610 INF: Z Motor: Moving to -0.171087 mm, started at -0.173105 mm, distance = 2.02 um 17-03-17 23:38:23.958 -07 000000610 INF: FPGA: Xmit ZDACW 37374\n [Z Motor] 17-03-17 23:38:23.958 -07 000000409 INF: FPGA: Recv ZDACW 17-03-17 23:38:23.968 -07 000000610 INF: FPGA: 'ZDACW 37374' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-17 23:38:23.968 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:38:23.968 -07 000000618 INF: FPGA: Recv ZDACR 37374 17-03-17 23:38:23.978 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:23.978 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:38:24.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:24.128 -07 000000541 INF: FPGA: Recv ZSGSRD 35924 17-03-17 23:38:24.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:24.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:24.138 -07 000000433 INF: FPGA: Recv ZSGSRD 35925 17-03-17 23:38:24.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:24.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:24.148 -07 000000576 INF: FPGA: Recv ZSGSRD 35920 17-03-17 23:38:24.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:24.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:24.158 -07 000000561 INF: FPGA: Recv ZSGSRD 35920 17-03-17 23:38:24.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:24.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:24.168 -07 000000482 INF: FPGA: Recv ZSGSRD 35925 17-03-17 23:38:24.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:24.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:24.178 -07 000000627 INF: FPGA: Recv ZSGSRD 35922 17-03-17 23:38:24.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:24.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:24.188 -07 000000459 INF: FPGA: Recv ZSGSRD 35923 17-03-17 23:38:24.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:24.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:24.198 -07 000000448 INF: FPGA: Recv ZSGSRD 35920 17-03-17 23:38:24.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:24.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:24.208 -07 000000475 INF: FPGA: Recv ZSGSRD 35925 17-03-17 23:38:24.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:24.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:24.218 -07 000000618 INF: FPGA: Recv ZSGSRD 35921 17-03-17 23:38:24.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:24.228 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:38:24.228 -07 000000627 INF: FPGA: Recv ZPIEZORD 30612 17-03-17 23:38:24.238 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:24.238 -07 000000610 INF: Z Motor: Piezo is near 45.4 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.703 V. Piezo Error = -11.6 V. 17-03-17 23:38:24.238 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.1 um, Read 10 ADC samples: Avg = 35922 (-170.2 uncal um), Error = 0.9 uncal um, Median = 35922 (-170.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 35920 (-170.2 uncal um), Max = 35925 (-170.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um) 17-03-17 23:38:24.238 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35922, posNoise = 3, negNoise = 2 17-03-17 23:38:24.238 -07 000000610 INF: Z Motor: After move to -0.171087, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:38:24.238 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms) 17-03-17 23:38:24.238 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:38:24.238 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:38:24.248 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:38:24.248 -07 000000482 INF: Disarm and arm camera sensor 0: FullImageTriggered start. 17-03-17 23:38:24.248 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:38:24.248 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:38:24.248 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:38:24.248 -07 000000482 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start. 17-03-17 23:38:24.248 -07 000000482 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms. 17-03-17 23:38:24.248 -07 000000482 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start. 17-03-17 23:38:24.258 -07 000000482 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 6 ms. 17-03-17 23:38:24.258 -07 000000482 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 10 ms. 17-03-17 23:38:24.258 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera] 17-03-17 23:38:24.458 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 192 17-03-17 23:38:24.658 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 392 17-03-17 23:38:24.658 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392 17-03-17 23:38:24.658 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start. 17-03-17 23:38:24.658 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) start. 17-03-17 23:38:24.848 -07 000000618 INF: FPGA: Recv @CAMSNAP 585 17-03-17 23:38:24.848 -07 000000459 INF: FPGA: Recv CAMSNAP 17-03-17 23:38:24.848 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 586 ms to get response, and 589 ms overall 17-03-17 23:38:25.248 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) end. Duration was 587 ms. 17-03-17 23:38:25.248 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:38:25.248 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:38:25.248 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 592 ms. 17-03-17 23:38:25.448 -07 000000610 INF: ComputeBrenner start 17-03-17 23:38:25.458 -07 000000610 INF: Image SNR check: start 17-03-17 23:38:25.468 -07 000000610 INF: Image SNR check: image is Faint [peak (Max-Min)=36.14] 17-03-17 23:38:25.468 -07 000000610 INF: Scanning Z-Position: -0.169089 17-03-17 23:38:25.468 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36937, sync = True, waitForSettling = True) 17-03-17 23:38:25.468 -07 000000610 INF: Z Motor: Moving to -0.169087 mm, started at -0.171094 mm, distance = 2.01 um 17-03-17 23:38:25.468 -07 000000610 INF: FPGA: Xmit ZDACW 36937\n [Z Motor] 17-03-17 23:38:25.468 -07 000000482 INF: FPGA: Recv ZDACW 17-03-17 23:38:25.478 -07 000000610 INF: FPGA: 'ZDACW 36937' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:38:25.478 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:38:25.478 -07 000000480 INF: FPGA: Recv ZDACR 36937 17-03-17 23:38:25.488 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:25.488 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:38:25.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:25.638 -07 000000541 INF: FPGA: Recv ZSGSRD 35610 17-03-17 23:38:25.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:38:25.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:25.648 -07 000000475 INF: FPGA: Recv ZSGSRD 35610 17-03-17 23:38:25.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:25.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:25.658 -07 000000561 INF: FPGA: Recv ZSGSRD 35610 17-03-17 23:38:25.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:25.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:25.668 -07 000000627 INF: FPGA: Recv ZSGSRD 35615 17-03-17 23:38:25.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:25.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:25.678 -07 000000433 INF: FPGA: Recv ZSGSRD 35604 17-03-17 23:38:25.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:25.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:25.688 -07 000000409 INF: FPGA: Recv ZSGSRD 35609 17-03-17 23:38:25.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:25.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:25.698 -07 000000512 INF: FPGA: Recv ZSGSRD 35610 17-03-17 23:38:25.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:25.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:25.708 -07 000000561 INF: FPGA: Recv ZSGSRD 35612 17-03-17 23:38:25.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:25.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:25.718 -07 000000627 INF: FPGA: Recv ZSGSRD 35608 17-03-17 23:38:25.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:25.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:25.728 -07 000000433 INF: FPGA: Recv ZSGSRD 35611 17-03-17 23:38:25.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:25.738 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:38:25.738 -07 000000541 INF: FPGA: Recv ZPIEZORD 30302 17-03-17 23:38:25.748 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:25.748 -07 000000610 INF: Z Motor: Piezo is near 44.7 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.636 V. Piezo Error = -11.6 V. 17-03-17 23:38:25.748 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.1 um, Read 10 ADC samples: Avg = 35610 (-168.2 uncal um), Error = 0.9 uncal um, Median = 35610 (-168.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35604 (-168.2 uncal um), Max = 35615 (-168.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um) 17-03-17 23:38:25.748 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35610, posNoise = 5, negNoise = 6 17-03-17 23:38:25.748 -07 000000610 INF: Z Motor: After move to -0.169087, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:38:25.748 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms) 17-03-17 23:38:25.748 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:38:25.748 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:38:25.748 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:38:25.748 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:38:25.748 -07 000000438 INF: Disarm and arm camera sensor 0: FullImageTriggered start. 17-03-17 23:38:25.748 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:38:25.748 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:38:25.748 -07 000000438 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start. 17-03-17 23:38:25.758 -07 000000438 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms. 17-03-17 23:38:25.758 -07 000000438 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start. 17-03-17 23:38:25.768 -07 000000438 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms. 17-03-17 23:38:25.768 -07 000000438 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms. 17-03-17 23:38:25.768 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera] 17-03-17 23:38:25.968 -07 000000448 INF: FPGA: Recv @CAMSNAP turning led on 192 17-03-17 23:38:26.168 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 392 17-03-17 23:38:26.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392 17-03-17 23:38:26.168 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start. 17-03-17 23:38:26.168 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1077874736, 0x0, 314322768) start. 17-03-17 23:38:26.358 -07 000000448 INF: FPGA: Recv @CAMSNAP 585 17-03-17 23:38:26.358 -07 000000576 INF: FPGA: Recv CAMSNAP 17-03-17 23:38:26.358 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 585 ms to get response, and 589 ms overall 17-03-17 23:38:26.758 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1077874736, 0x0, 314322768) end. Duration was 587 ms. 17-03-17 23:38:26.758 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:38:26.758 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:38:26.758 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms. 17-03-17 23:38:26.958 -07 000000610 INF: ComputeBrenner start 17-03-17 23:38:26.968 -07 000000610 INF: Image SNR check: start 17-03-17 23:38:26.978 -07 000000610 INF: Image SNR check: image is Faint [peak (Max-Min)=21.88] 17-03-17 23:38:26.978 -07 000000610 INF: Scanning Z-Position: -0.167089 17-03-17 23:38:26.978 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36501, sync = True, waitForSettling = True) 17-03-17 23:38:26.978 -07 000000610 INF: Z Motor: Moving to -0.167091 mm, started at -0.169090 mm, distance = 2.00 um 17-03-17 23:38:26.978 -07 000000610 INF: FPGA: Xmit ZDACW 36501\n [Z Motor] 17-03-17 23:38:26.978 -07 000000547 INF: FPGA: Recv ZDACW 17-03-17 23:38:26.988 -07 000000610 INF: FPGA: 'ZDACW 36501' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:38:26.988 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:38:26.988 -07 000000618 INF: FPGA: Recv ZDACR 36501 17-03-17 23:38:26.998 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:26.998 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:38:27.088 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:38:27.088 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:38:27.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:27.148 -07 000000433 INF: FPGA: Recv ZSGSRD 35298 17-03-17 23:38:27.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:38:27.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:27.158 -07 000000618 INF: FPGA: Recv ZSGSRD 35304 17-03-17 23:38:27.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:27.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:27.168 -07 000000409 INF: FPGA: Recv ZSGSRD 35301 17-03-17 23:38:27.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:27.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:27.178 -07 000000486 INF: FPGA: Recv ZSGSRD 35298 17-03-17 23:38:27.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:27.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:27.188 -07 000000480 INF: FPGA: Recv ZSGSRD 35296 17-03-17 23:38:27.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:27.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:27.198 -07 000000433 INF: FPGA: Recv ZSGSRD 35305 17-03-17 23:38:27.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:27.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:27.208 -07 000000512 INF: FPGA: Recv ZSGSRD 35301 17-03-17 23:38:27.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:27.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:27.218 -07 000000409 INF: FPGA: Recv ZSGSRD 35297 17-03-17 23:38:27.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:27.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:27.228 -07 000000475 INF: FPGA: Recv ZSGSRD 35305 17-03-17 23:38:27.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:27.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:27.238 -07 000000459 INF: FPGA: Recv ZSGSRD 35303 17-03-17 23:38:27.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:27.248 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:38:27.248 -07 000000433 INF: FPGA: Recv ZPIEZORD 30056 17-03-17 23:38:27.258 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:27.258 -07 000000610 INF: Z Motor: Piezo is near 44.2 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.570 V. Piezo Error = -11.5 V. 17-03-17 23:38:27.258 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.1 um, Read 10 ADC samples: Avg = 35301 (-166.2 uncal um), Error = 0.9 uncal um, Median = 35301 (-166.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35296 (-166.2 uncal um), Max = 35305 (-166.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-17 23:38:27.258 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35301, posNoise = 4, negNoise = 5 17-03-17 23:38:27.258 -07 000000610 INF: Z Motor: After move to -0.167091, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:38:27.258 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms) 17-03-17 23:38:27.258 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:38:27.258 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:38:27.258 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:38:27.258 -07 000000459 INF: Disarm and arm camera sensor 0: FullImageTriggered start. 17-03-17 23:38:27.258 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:38:27.258 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:38:27.258 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:38:27.258 -07 000000459 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start. 17-03-17 23:38:27.258 -07 000000459 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms. 17-03-17 23:38:27.258 -07 000000459 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start. 17-03-17 23:38:27.268 -07 000000459 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 9 ms. 17-03-17 23:38:27.268 -07 000000459 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 13 ms. 17-03-17 23:38:27.278 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera] 17-03-17 23:38:27.478 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 192 17-03-17 23:38:27.628 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 4.001704, 17-03-17 23:38:27.678 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 392 17-03-17 23:38:27.678 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392 17-03-17 23:38:27.678 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start. 17-03-17 23:38:27.678 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1129477224, 0x0, 314322768) start. 17-03-17 23:38:27.868 -07 000000409 INF: FPGA: Recv @CAMSNAP 585 17-03-17 23:38:27.868 -07 000000623 INF: FPGA: Recv CAMSNAP 17-03-17 23:38:27.868 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 582 ms to get response, and 589 ms overall 17-03-17 23:38:28.258 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1129477224, 0x0, 314322768) end. Duration was 585 ms. 17-03-17 23:38:28.258 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:38:28.268 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:38:28.268 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 590 ms. 17-03-17 23:38:28.478 -07 000000610 INF: ComputeBrenner start 17-03-17 23:38:28.488 -07 000000610 INF: Image SNR check: start 17-03-17 23:38:28.498 -07 000000610 INF: Image SNR check: image is Dark [peak (Max-Min)=19.41] 17-03-17 23:38:28.498 -07 000000610 INF: Scanning Z-Position: -0.165089 17-03-17 23:38:28.498 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36064, sync = True, waitForSettling = True) 17-03-17 23:38:28.498 -07 000000610 INF: Z Motor: Moving to -0.165090 mm, started at -0.167104 mm, distance = 2.01 um 17-03-17 23:38:28.498 -07 000000610 INF: FPGA: Xmit ZDACW 36064\n [Z Motor] 17-03-17 23:38:28.498 -07 000000480 INF: FPGA: Recv ZDACW 17-03-17 23:38:28.508 -07 000000610 INF: FPGA: 'ZDACW 36064' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-17 23:38:28.508 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:38:28.508 -07 000000409 INF: FPGA: Recv ZDACR 36064 17-03-17 23:38:28.518 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:28.518 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:38:28.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:28.668 -07 000000486 INF: FPGA: Recv ZSGSRD 34985 17-03-17 23:38:28.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:28.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:28.678 -07 000000459 INF: FPGA: Recv ZSGSRD 34988 17-03-17 23:38:28.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:28.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:28.688 -07 000000438 INF: FPGA: Recv ZSGSRD 34988 17-03-17 23:38:28.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:28.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:28.698 -07 000000433 INF: FPGA: Recv ZSGSRD 34989 17-03-17 23:38:28.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:28.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:28.708 -07 000000512 INF: FPGA: Recv ZSGSRD 34990 17-03-17 23:38:28.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:28.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:28.718 -07 000000486 INF: FPGA: Recv ZSGSRD 34979 17-03-17 23:38:28.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:28.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:28.728 -07 000000623 INF: FPGA: Recv ZSGSRD 34989 17-03-17 23:38:28.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:28.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:28.738 -07 000000618 INF: FPGA: Recv ZSGSRD 34995 17-03-17 23:38:28.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:28.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:28.748 -07 000000482 INF: FPGA: Recv ZSGSRD 34984 17-03-17 23:38:28.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:28.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:28.758 -07 000000409 INF: FPGA: Recv ZSGSRD 34991 17-03-17 23:38:28.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:28.768 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:38:28.768 -07 000000502 INF: FPGA: Recv ZPIEZORD 29699 17-03-17 23:38:28.778 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:28.778 -07 000000610 INF: Z Motor: Piezo is near 43.4 V (nominally 0 to 100 V), expect near 55.0 V, since DAC is at 5.503 V. Piezo Error = -11.6 V. 17-03-17 23:38:28.778 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.1 um, Read 10 ADC samples: Avg = 34988 (-164.2 uncal um), Error = 0.9 uncal um, Median = 34988 (-164.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 34979 (-164.2 uncal um), Max = 34995 (-164.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um) 17-03-17 23:38:28.778 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34988, posNoise = 7, negNoise = 9 17-03-17 23:38:28.778 -07 000000610 INF: Z Motor: After move to -0.165090, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:38:28.778 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms) 17-03-17 23:38:28.778 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:38:28.778 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:38:28.778 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:38:28.778 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:38:28.778 -07 000000486 INF: Disarm and arm camera sensor 0: FullImageTriggered start. 17-03-17 23:38:28.778 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:38:28.788 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:38:28.788 -07 000000486 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start. 17-03-17 23:38:28.788 -07 000000486 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms. 17-03-17 23:38:28.788 -07 000000486 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start. 17-03-17 23:38:28.798 -07 000000486 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms. 17-03-17 23:38:28.798 -07 000000486 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 14 ms. 17-03-17 23:38:28.798 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera] 17-03-17 23:38:28.998 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 192 17-03-17 23:38:29.198 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 392 17-03-17 23:38:29.198 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392 17-03-17 23:38:29.198 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start. 17-03-17 23:38:29.198 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) start. 17-03-17 23:38:29.388 -07 000000475 INF: FPGA: Recv @CAMSNAP 585 17-03-17 23:38:29.388 -07 000000541 INF: FPGA: Recv CAMSNAP 17-03-17 23:38:29.388 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 585 ms to get response, and 589 ms overall 17-03-17 23:38:29.778 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) end. Duration was 585 ms. 17-03-17 23:38:29.778 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:38:29.788 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:38:29.788 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 590 ms. 17-03-17 23:38:29.888 -07 000000610 INF: ComputeBrenner start 17-03-17 23:38:29.898 -07 000000610 INF: Image SNR check: start 17-03-17 23:38:29.908 -07 000000610 INF: Image SNR check: image is Dark [peak (Max-Min)=18.97] 17-03-17 23:38:29.908 -07 000000610 INF: Scanning Z-Position: -0.163089 17-03-17 23:38:29.908 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 35627, sync = True, waitForSettling = True) 17-03-17 23:38:29.908 -07 000000610 INF: Z Motor: Moving to -0.163090 mm, started at -0.165094 mm, distance = 2.00 um 17-03-17 23:38:29.908 -07 000000610 INF: FPGA: Xmit ZDACW 35627\n [Z Motor] 17-03-17 23:38:29.908 -07 000000433 INF: FPGA: Recv ZDACW 17-03-17 23:38:29.918 -07 000000610 INF: FPGA: 'ZDACW 35627' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:38:29.918 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:38:29.918 -07 000000618 INF: FPGA: Recv ZDACR 35627 17-03-17 23:38:29.928 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:29.928 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:38:30.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:30.078 -07 000000448 INF: FPGA: Recv ZSGSRD 34675 17-03-17 23:38:30.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:38:30.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:30.088 -07 000000409 INF: FPGA: Recv ZSGSRD 34675 17-03-17 23:38:30.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:30.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:30.098 -07 000000512 INF: FPGA: Recv ZSGSRD 34680 17-03-17 23:38:30.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:30.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:30.108 -07 000000486 INF: FPGA: Recv ZSGSRD 34673 17-03-17 23:38:30.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:30.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:30.118 -07 000000502 INF: FPGA: Recv ZSGSRD 34675 17-03-17 23:38:30.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:30.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:30.128 -07 000000618 INF: FPGA: Recv ZSGSRD 34677 17-03-17 23:38:30.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:30.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:30.138 -07 000000409 INF: FPGA: Recv ZSGSRD 34673 17-03-17 23:38:30.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:30.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:30.148 -07 000000512 INF: FPGA: Recv ZSGSRD 34681 17-03-17 23:38:30.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:30.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:30.158 -07 000000433 INF: FPGA: Recv ZSGSRD 34681 17-03-17 23:38:30.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:30.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:30.168 -07 000000448 INF: FPGA: Recv ZSGSRD 34676 17-03-17 23:38:30.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:30.178 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:38:30.178 -07 000000480 INF: FPGA: Recv ZPIEZORD 29454 17-03-17 23:38:30.188 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:38:30.188 -07 000000610 INF: Z Motor: Piezo is near 42.9 V (nominally 0 to 100 V), expect near 54.4 V, since DAC is at 5.436 V. Piezo Error = -11.4 V. 17-03-17 23:38:30.188 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -163.1 um, Read 10 ADC samples: Avg = 34677 (-162.2 uncal um), Error = 0.9 uncal um, Median = 34676 (-162.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 34673 (-162.2 uncal um), Max = 34681 (-162.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um) 17-03-17 23:38:30.188 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34677, posNoise = 4, negNoise = 4 17-03-17 23:38:30.188 -07 000000610 INF: Z Motor: After move to -0.163090, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:38:30.188 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms) 17-03-17 23:38:30.188 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:38:30.188 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:38:30.188 -07 000000409 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:38:30.188 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:38:30.188 -07 000000433 INF: Disarm and arm camera sensor 0: FullImageTriggered start. 17-03-17 23:38:30.188 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:38:30.188 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:38:30.188 -07 000000433 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start. 17-03-17 23:38:30.198 -07 000000433 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms. 17-03-17 23:38:30.198 -07 000000433 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start. 17-03-17 23:38:30.208 -07 000000433 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms. 17-03-17 23:38:30.208 -07 000000433 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms. 17-03-17 23:38:30.208 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera] 17-03-17 23:38:30.408 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 194 17-03-17 23:38:30.608 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 394 17-03-17 23:38:30.608 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 394 17-03-17 23:38:30.608 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start. 17-03-17 23:38:30.608 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1077874736, 0x0, 314322768) start. 17-03-17 23:38:30.798 -07 000000627 INF: FPGA: Recv @CAMSNAP 585 17-03-17 23:38:30.798 -07 000000576 INF: FPGA: Recv CAMSNAP 17-03-17 23:38:30.798 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 585 ms to get response, and 589 ms overall 17-03-17 23:38:31.198 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1077874736, 0x0, 314322768) end. Duration was 587 ms. 17-03-17 23:38:31.198 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:38:31.198 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:38:31.198 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 592 ms. 17-03-17 23:38:31.498 -07 000000610 INF: ComputeBrenner start 17-03-17 23:38:31.508 -07 000000610 INF: Image SNR check: start 17-03-17 23:38:31.518 -07 000000610 INF: Image SNR check: image is Dark [peak (Max-Min)=18.88] 17-03-17 23:38:31.518 -07 000000610 INF: Scanning Z-Position: -0.161089 17-03-17 23:38:31.518 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 35190, sync = True, waitForSettling = True) 17-03-17 23:38:31.518 -07 000000610 INF: Z Motor: Moving to -0.161089 mm, started at -0.163096 mm, distance = 2.01 um 17-03-17 23:38:31.518 -07 000000610 INF: FPGA: Xmit ZDACW 35190\n [Z Motor] 17-03-17 23:38:31.518 -07 000000448 INF: FPGA: Recv ZDACW 17-03-17 23:38:31.528 -07 000000610 INF: FPGA: 'ZDACW 35190' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:38:31.528 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:38:31.528 -07 000000576 INF: FPGA: Recv ZDACR 35190 17-03-17 23:38:31.538 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:31.538 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:38:31.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:31.688 -07 000000561 INF: FPGA: Recv ZSGSRD 34371 17-03-17 23:38:31.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:38:31.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:31.698 -07 000000459 INF: FPGA: Recv ZSGSRD 34368 17-03-17 23:38:31.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:31.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:31.708 -07 000000627 INF: FPGA: Recv ZSGSRD 34366 17-03-17 23:38:31.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:31.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:31.718 -07 000000502 INF: FPGA: Recv ZSGSRD 34362 17-03-17 23:38:31.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:31.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:31.728 -07 000000541 INF: FPGA: Recv ZSGSRD 34366 17-03-17 23:38:31.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:31.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:31.738 -07 000000438 INF: FPGA: Recv ZSGSRD 34368 17-03-17 23:38:31.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:31.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:31.748 -07 000000480 INF: FPGA: Recv ZSGSRD 34364 17-03-17 23:38:31.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:31.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:31.758 -07 000000482 INF: FPGA: Recv ZSGSRD 34369 17-03-17 23:38:31.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:31.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:31.768 -07 000000627 INF: FPGA: Recv ZSGSRD 34368 17-03-17 23:38:31.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:31.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:31.778 -07 000000433 INF: FPGA: Recv ZSGSRD 34366 17-03-17 23:38:31.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:31.788 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:38:31.788 -07 000000438 INF: FPGA: Recv ZPIEZORD 29139 17-03-17 23:38:31.798 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:31.798 -07 000000610 INF: Z Motor: Piezo is near 42.2 V (nominally 0 to 100 V), expect near 53.7 V, since DAC is at 5.370 V. Piezo Error = -11.4 V. 17-03-17 23:38:31.798 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -161.1 um, Read 10 ADC samples: Avg = 34367 (-160.3 uncal um), Error = 0.8 uncal um, Median = 34367 (-160.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 34362 (-160.2 uncal um), Max = 34371 (-160.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-17 23:38:31.798 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34367, posNoise = 4, negNoise = 5 17-03-17 23:38:31.798 -07 000000610 INF: Z Motor: After move to -0.161089, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:38:31.798 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms) 17-03-17 23:38:31.798 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:38:31.798 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:38:31.798 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:38:31.798 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:38:31.798 -07 000000433 INF: Disarm and arm camera sensor 0: FullImageTriggered start. 17-03-17 23:38:31.798 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:38:31.798 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:38:31.798 -07 000000433 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start. 17-03-17 23:38:31.808 -07 000000433 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms. 17-03-17 23:38:31.808 -07 000000433 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start. 17-03-17 23:38:31.818 -07 000000433 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 12 ms. 17-03-17 23:38:31.818 -07 000000433 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 17 ms. 17-03-17 23:38:31.818 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera] 17-03-17 23:38:32.018 -07 000000547 INF: FPGA: Recv @CAMSNAP turning led on 192 17-03-17 23:38:32.088 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:38:32.088 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:38:32.218 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 392 17-03-17 23:38:32.218 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392 17-03-17 23:38:32.218 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start. 17-03-17 23:38:32.218 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1129477224, 0x0, 314322768) start. 17-03-17 23:38:32.408 -07 000000623 INF: FPGA: Recv @CAMSNAP 585 17-03-17 23:38:32.408 -07 000000448 INF: FPGA: Recv CAMSNAP 17-03-17 23:38:32.408 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 585 ms to get response, and 589 ms overall 17-03-17 23:38:32.808 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1129477224, 0x0, 314322768) end. Duration was 586 ms. 17-03-17 23:38:32.808 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:38:32.808 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:38:32.808 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 590 ms. 17-03-17 23:38:32.988 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 3.981281, 17-03-17 23:38:33.118 -07 000000610 INF: ComputeBrenner start 17-03-17 23:38:33.128 -07 000000610 INF: Image SNR check: start 17-03-17 23:38:33.138 -07 000000610 INF: Image SNR check: image is Dark [peak (Max-Min)=18.13] 17-03-17 23:38:33.138 -07 000000610 INF: Scanning Z-Position: -0.159089 17-03-17 23:38:33.138 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 34753, sync = True, waitForSettling = True) 17-03-17 23:38:33.138 -07 000000610 INF: Z Motor: Moving to -0.159089 mm, started at -0.161104 mm, distance = 2.02 um 17-03-17 23:38:33.148 -07 000000610 INF: FPGA: Xmit ZDACW 34753\n [Z Motor] 17-03-17 23:38:33.148 -07 000000486 INF: FPGA: Recv ZDACW 17-03-17 23:38:33.158 -07 000000610 INF: FPGA: 'ZDACW 34753' command took 0 ms to send, 0 ms to get response, and 14 ms overall 17-03-17 23:38:33.158 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:38:33.158 -07 000000482 INF: FPGA: Recv ZDACR 34753 17-03-17 23:38:33.168 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:33.168 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:38:33.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:33.318 -07 000000438 INF: FPGA: Recv ZSGSRD 34055 17-03-17 23:38:33.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:33.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:33.328 -07 000000627 INF: FPGA: Recv ZSGSRD 34050 17-03-17 23:38:33.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:33.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:33.338 -07 000000433 INF: FPGA: Recv ZSGSRD 34054 17-03-17 23:38:33.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:33.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:33.348 -07 000000502 INF: FPGA: Recv ZSGSRD 34057 17-03-17 23:38:33.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:38:33.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:33.358 -07 000000482 INF: FPGA: Recv ZSGSRD 34059 17-03-17 23:38:33.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:33.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:33.368 -07 000000623 INF: FPGA: Recv ZSGSRD 34053 17-03-17 23:38:33.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:33.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:33.378 -07 000000627 INF: FPGA: Recv ZSGSRD 34052 17-03-17 23:38:33.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:33.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:33.388 -07 000000433 INF: FPGA: Recv ZSGSRD 34053 17-03-17 23:38:33.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:33.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:33.398 -07 000000502 INF: FPGA: Recv ZSGSRD 34052 17-03-17 23:38:33.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:33.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:33.408 -07 000000547 INF: FPGA: Recv ZSGSRD 34048 17-03-17 23:38:33.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:33.418 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:38:33.418 -07 000000438 INF: FPGA: Recv ZPIEZORD 28838 17-03-17 23:38:33.428 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:33.428 -07 000000610 INF: Z Motor: Piezo is near 41.6 V (nominally 0 to 100 V), expect near 53.0 V, since DAC is at 5.303 V. Piezo Error = -11.4 V. 17-03-17 23:38:33.428 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -159.1 um, Read 10 ADC samples: Avg = 34053 (-158.2 uncal um), Error = 0.9 uncal um, Median = 34053 (-158.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 34048 (-158.2 uncal um), Max = 34059 (-158.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-17 23:38:33.428 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34053, posNoise = 6, negNoise = 5 17-03-17 23:38:33.428 -07 000000610 INF: Z Motor: After move to -0.159089, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:38:33.428 -07 000000610 INF: Z Motor: MoveAbsStepped took 286 ms) 17-03-17 23:38:33.428 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:38:33.428 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:38:33.428 -07 000000409 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:38:33.428 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:38:33.428 -07 000000448 INF: Disarm and arm camera sensor 0: FullImageTriggered start. 17-03-17 23:38:33.428 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:38:33.438 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:38:33.438 -07 000000448 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start. 17-03-17 23:38:33.438 -07 000000448 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms. 17-03-17 23:38:33.438 -07 000000448 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start. 17-03-17 23:38:33.448 -07 000000448 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 7 ms. 17-03-17 23:38:33.448 -07 000000448 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 12 ms. 17-03-17 23:38:33.468 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera] 17-03-17 23:38:33.658 -07 000000448 INF: FPGA: Recv @CAMSNAP turning led on 192 17-03-17 23:38:33.858 -07 000000486 INF: FPGA: Recv @CAMSNAP img rdy 392 17-03-17 23:38:33.858 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392 17-03-17 23:38:33.858 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start. 17-03-17 23:38:33.858 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) start. 17-03-17 23:38:34.048 -07 000000480 INF: FPGA: Recv @CAMSNAP 585 17-03-17 23:38:34.058 -07 000000459 INF: FPGA: Recv CAMSNAP 17-03-17 23:38:34.058 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 580 ms to get response, and 606 ms overall 17-03-17 23:38:34.448 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) end. Duration was 587 ms. 17-03-17 23:38:34.448 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:38:34.458 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:38:34.458 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 592 ms. 17-03-17 23:38:34.558 -07 000000610 INF: ComputeBrenner start 17-03-17 23:38:34.568 -07 000000610 INF: Image SNR check: start 17-03-17 23:38:34.578 -07 000000610 INF: Image SNR check: image is Dark [peak (Max-Min)=17.68] 17-03-17 23:38:34.578 -07 000000610 INF: Scanning Z-Position: -0.157089 17-03-17 23:38:34.578 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 34316, sync = True, waitForSettling = True) 17-03-17 23:38:34.578 -07 000000610 INF: Z Motor: Moving to -0.157089 mm, started at -0.159087 mm, distance = 2.00 um 17-03-17 23:38:34.578 -07 000000610 INF: FPGA: Xmit ZDACW 34316\n [Z Motor] 17-03-17 23:38:34.578 -07 000000561 INF: FPGA: Recv ZDACW 17-03-17 23:38:34.588 -07 000000610 INF: FPGA: 'ZDACW 34316' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:38:34.588 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:38:34.588 -07 000000541 INF: FPGA: Recv ZDACR 34316 17-03-17 23:38:34.598 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:34.598 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:38:34.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:34.748 -07 000000623 INF: FPGA: Recv ZSGSRD 33740 17-03-17 23:38:34.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:38:34.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:34.758 -07 000000409 INF: FPGA: Recv ZSGSRD 33747 17-03-17 23:38:34.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:34.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:34.768 -07 000000627 INF: FPGA: Recv ZSGSRD 33737 17-03-17 23:38:34.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:34.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:34.778 -07 000000482 INF: FPGA: Recv ZSGSRD 33738 17-03-17 23:38:34.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:34.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:34.788 -07 000000541 INF: FPGA: Recv ZSGSRD 33746 17-03-17 23:38:34.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:34.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:34.798 -07 000000502 INF: FPGA: Recv ZSGSRD 33748 17-03-17 23:38:34.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:34.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:34.808 -07 000000448 INF: FPGA: Recv ZSGSRD 33739 17-03-17 23:38:34.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:34.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:34.818 -07 000000512 INF: FPGA: Recv ZSGSRD 33738 17-03-17 23:38:34.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:34.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:34.828 -07 000000547 INF: FPGA: Recv ZSGSRD 33743 17-03-17 23:38:34.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:34.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:34.838 -07 000000459 INF: FPGA: Recv ZSGSRD 33749 17-03-17 23:38:34.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:34.848 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:38:34.848 -07 000000502 INF: FPGA: Recv ZPIEZORD 28538 17-03-17 23:38:34.858 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:34.858 -07 000000610 INF: Z Motor: Piezo is near 41.0 V (nominally 0 to 100 V), expect near 52.4 V, since DAC is at 5.236 V. Piezo Error = -11.4 V. 17-03-17 23:38:34.858 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -157.1 um, Read 10 ADC samples: Avg = 33742 (-156.2 uncal um), Error = 0.8 uncal um, Median = 33742 (-156.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 33737 (-156.2 uncal um), Max = 33749 (-156.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-17 23:38:34.858 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 33742, posNoise = 7, negNoise = 5 17-03-17 23:38:34.858 -07 000000610 INF: Z Motor: After move to -0.157089, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:38:34.858 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms) 17-03-17 23:38:34.858 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:38:34.858 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:38:34.858 -07 000000409 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:38:34.858 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:38:34.858 -07 000000627 INF: Disarm and arm camera sensor 0: FullImageTriggered start. 17-03-17 23:38:34.858 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:38:34.858 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:38:34.858 -07 000000627 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start. 17-03-17 23:38:34.868 -07 000000627 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms. 17-03-17 23:38:34.868 -07 000000627 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start. 17-03-17 23:38:34.878 -07 000000627 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 9 ms. 17-03-17 23:38:34.878 -07 000000627 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 13 ms. 17-03-17 23:38:34.878 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera] 17-03-17 23:38:35.078 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 192 17-03-17 23:38:35.278 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 392 17-03-17 23:38:35.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392 17-03-17 23:38:35.278 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start. 17-03-17 23:38:35.278 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1077874736, 0x0, 314322768) start. 17-03-17 23:38:35.468 -07 000000438 INF: FPGA: Recv @CAMSNAP 585 17-03-17 23:38:35.468 -07 000000448 INF: FPGA: Recv CAMSNAP 17-03-17 23:38:35.468 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 2 ms to send, 583 ms to get response, and 591 ms overall 17-03-17 23:38:35.858 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1077874736, 0x0, 314322768) end. Duration was 586 ms. 17-03-17 23:38:35.858 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:38:35.868 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:38:35.868 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms. 17-03-17 23:38:36.068 -07 000000610 INF: ComputeBrenner start 17-03-17 23:38:36.078 -07 000000610 INF: Image SNR check: start 17-03-17 23:38:36.088 -07 000000610 INF: Image SNR check: image is Dark [peak (Max-Min)=17.11] 17-03-17 23:38:36.088 -07 000000610 INF: Scanning Z-Position: -0.155089 17-03-17 23:38:36.088 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 33879, sync = True, waitForSettling = True) 17-03-17 23:38:36.088 -07 000000610 INF: Z Motor: Moving to -0.155088 mm, started at -0.157089 mm, distance = 2.00 um 17-03-17 23:38:36.088 -07 000000610 INF: FPGA: Xmit ZDACW 33879\n [Z Motor] 17-03-17 23:38:36.088 -07 000000480 INF: FPGA: Recv ZDACW 17-03-17 23:38:36.098 -07 000000610 INF: FPGA: 'ZDACW 33879' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:38:36.098 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:38:36.098 -07 000000627 INF: FPGA: Recv ZDACR 33879 17-03-17 23:38:36.108 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:36.108 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:38:36.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:36.258 -07 000000541 INF: FPGA: Recv ZSGSRD 33433 17-03-17 23:38:36.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:38:36.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:36.268 -07 000000512 INF: FPGA: Recv ZSGSRD 33426 17-03-17 23:38:36.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:36.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:36.278 -07 000000438 INF: FPGA: Recv ZSGSRD 33431 17-03-17 23:38:36.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:36.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:36.288 -07 000000433 INF: FPGA: Recv ZSGSRD 33428 17-03-17 23:38:36.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:36.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:36.298 -07 000000627 INF: FPGA: Recv ZSGSRD 33434 17-03-17 23:38:36.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:36.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:36.308 -07 000000409 INF: FPGA: Recv ZSGSRD 33424 17-03-17 23:38:36.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:36.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:36.318 -07 000000512 INF: FPGA: Recv ZSGSRD 33429 17-03-17 23:38:36.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:36.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:36.328 -07 000000448 INF: FPGA: Recv ZSGSRD 33434 17-03-17 23:38:36.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:36.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:36.338 -07 000000561 INF: FPGA: Recv ZSGSRD 33433 17-03-17 23:38:36.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:36.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:36.348 -07 000000576 INF: FPGA: Recv ZSGSRD 33430 17-03-17 23:38:36.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:36.358 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:38:36.358 -07 000000547 INF: FPGA: Recv ZPIEZORD 28231 17-03-17 23:38:36.368 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:36.368 -07 000000610 INF: Z Motor: Piezo is near 40.3 V (nominally 0 to 100 V), expect near 51.7 V, since DAC is at 5.170 V. Piezo Error = -11.4 V. 17-03-17 23:38:36.368 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -155.1 um, Read 10 ADC samples: Avg = 33430 (-154.2 uncal um), Error = 0.8 uncal um, Median = 33430 (-154.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 33424 (-154.2 uncal um), Max = 33434 (-154.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um) 17-03-17 23:38:36.368 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 33430, posNoise = 4, negNoise = 6 17-03-17 23:38:36.368 -07 000000610 INF: Z Motor: After move to -0.155088, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:38:36.368 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms) 17-03-17 23:38:36.368 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:38:36.368 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:38:36.368 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:38:36.368 -07 000000409 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:38:36.368 -07 000000576 INF: Disarm and arm camera sensor 0: FullImageTriggered start. 17-03-17 23:38:36.368 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:38:36.368 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:38:36.368 -07 000000576 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start. 17-03-17 23:38:36.368 -07 000000576 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms. 17-03-17 23:38:36.368 -07 000000576 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start. 17-03-17 23:38:36.378 -07 000000576 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 9 ms. 17-03-17 23:38:36.378 -07 000000576 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 13 ms. 17-03-17 23:38:36.388 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera] 17-03-17 23:38:36.588 -07 000000541 INF: FPGA: Recv @CAMSNAP turning led on 192 17-03-17 23:38:36.788 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 392 17-03-17 23:38:36.788 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392 17-03-17 23:38:36.788 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start. 17-03-17 23:38:36.788 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1129477224, 0x0, 314322768) start. 17-03-17 23:38:36.978 -07 000000512 INF: FPGA: Recv @CAMSNAP 585 17-03-17 23:38:36.978 -07 000000627 INF: FPGA: Recv CAMSNAP 17-03-17 23:38:36.978 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 584 ms to get response, and 589 ms overall 17-03-17 23:38:37.088 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:38:37.368 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1129477224, 0x0, 314322768) end. Duration was 587 ms. 17-03-17 23:38:37.378 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:38:37.378 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:38:37.378 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 592 ms. 17-03-17 23:38:37.498 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:38:37.688 -07 000000610 INF: ComputeBrenner start 17-03-17 23:38:37.698 -07 000000610 INF: Image SNR check: start 17-03-17 23:38:37.708 -07 000000610 INF: Image SNR check: image is Dark [peak (Max-Min)=16.58] 17-03-17 23:38:37.708 -07 000000610 INF: Scanning Z-Position: -0.153089 17-03-17 23:38:37.708 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 33442, sync = True, waitForSettling = True) 17-03-17 23:38:37.708 -07 000000610 INF: Z Motor: Moving to -0.153088 mm, started at -0.155085 mm, distance = 2.00 um 17-03-17 23:38:37.708 -07 000000610 INF: FPGA: Xmit ZDACW 33442\n [Z Motor] 17-03-17 23:38:37.708 -07 000000547 INF: FPGA: Recv ZDACW 17-03-17 23:38:37.718 -07 000000610 INF: FPGA: 'ZDACW 33442' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-17 23:38:37.718 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:38:37.718 -07 000000627 INF: FPGA: Recv ZDACR 33442 17-03-17 23:38:37.728 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:37.728 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:38:37.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:37.878 -07 000000512 INF: FPGA: Recv ZSGSRD 33119 17-03-17 23:38:37.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:38:37.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:37.888 -07 000000448 INF: FPGA: Recv ZSGSRD 33120 17-03-17 23:38:37.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:37.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:37.898 -07 000000541 INF: FPGA: Recv ZSGSRD 33118 17-03-17 23:38:37.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:37.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:37.908 -07 000000438 INF: FPGA: Recv ZSGSRD 33122 17-03-17 23:38:37.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:37.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:37.918 -07 000000482 INF: FPGA: Recv ZSGSRD 33122 17-03-17 23:38:37.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:37.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:37.928 -07 000000480 INF: FPGA: Recv ZSGSRD 33118 17-03-17 23:38:37.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:37.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:37.938 -07 000000448 INF: FPGA: Recv ZSGSRD 33116 17-03-17 23:38:37.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:37.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:37.948 -07 000000541 INF: FPGA: Recv ZSGSRD 33121 17-03-17 23:38:37.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:37.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:37.958 -07 000000459 INF: FPGA: Recv ZSGSRD 33121 17-03-17 23:38:37.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:37.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:37.968 -07 000000618 INF: FPGA: Recv ZSGSRD 33120 17-03-17 23:38:37.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:37.978 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:38:37.978 -07 000000480 INF: FPGA: Recv ZPIEZORD 27974 17-03-17 23:38:37.988 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:37.988 -07 000000610 INF: Z Motor: Piezo is near 39.8 V (nominally 0 to 100 V), expect near 51.0 V, since DAC is at 5.103 V. Piezo Error = -11.3 V. 17-03-17 23:38:37.988 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -153.1 um, Read 10 ADC samples: Avg = 33120 (-152.3 uncal um), Error = 0.8 uncal um, Median = 33120 (-152.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 33116 (-152.2 uncal um), Max = 33122 (-152.3 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um) 17-03-17 23:38:37.988 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 33120, posNoise = 2, negNoise = 4 17-03-17 23:38:37.988 -07 000000610 INF: Z Motor: After move to -0.153088, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:38:37.988 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms) 17-03-17 23:38:37.988 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:38:37.988 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:38:37.988 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:38:37.988 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:38:37.988 -07 000000627 INF: Disarm and arm camera sensor 0: FullImageTriggered start. 17-03-17 23:38:37.988 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:38:37.988 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:38:37.988 -07 000000627 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start. 17-03-17 23:38:37.998 -07 000000627 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms. 17-03-17 23:38:37.998 -07 000000627 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start. 17-03-17 23:38:38.008 -07 000000627 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 9 ms. 17-03-17 23:38:38.008 -07 000000627 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 13 ms. 17-03-17 23:38:38.008 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera] 17-03-17 23:38:38.208 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 192 17-03-17 23:38:38.408 -07 000000482 INF: FPGA: Recv @CAMSNAP img rdy 392 17-03-17 23:38:38.408 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392 17-03-17 23:38:38.408 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start. 17-03-17 23:38:38.408 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) start. 17-03-17 23:38:38.458 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 3.978563, 17-03-17 23:38:38.598 -07 000000459 INF: FPGA: Recv @CAMSNAP 585 17-03-17 23:38:38.598 -07 000000438 INF: FPGA: Recv CAMSNAP 17-03-17 23:38:38.598 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 583 ms to get response, and 589 ms overall 17-03-17 23:38:38.988 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) end. Duration was 586 ms. 17-03-17 23:38:38.988 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:38:38.998 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:38:38.998 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 590 ms. 17-03-17 23:38:39.198 -07 000000610 INF: ComputeBrenner start 17-03-17 23:38:39.208 -07 000000610 INF: Image SNR check: start 17-03-17 23:38:39.218 -07 000000610 INF: Image SNR check: image is Dark [peak (Max-Min)=16.27] 17-03-17 23:38:39.218 -07 000000610 INF: Scanning Z-Position: -0.151089 17-03-17 23:38:39.218 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 33005, sync = True, waitForSettling = True) 17-03-17 23:38:39.218 -07 000000610 INF: Z Motor: Moving to -0.151087 mm, started at -0.153093 mm, distance = 2.01 um 17-03-17 23:38:39.218 -07 000000610 INF: FPGA: Xmit ZDACW 33005\n [Z Motor] 17-03-17 23:38:39.218 -07 000000541 INF: FPGA: Recv ZDACW 17-03-17 23:38:39.228 -07 000000610 INF: FPGA: 'ZDACW 33005' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:38:39.228 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:38:39.228 -07 000000480 INF: FPGA: Recv ZDACR 33005 17-03-17 23:38:39.238 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:39.238 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:38:39.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:39.388 -07 000000502 INF: FPGA: Recv ZSGSRD 32810 17-03-17 23:38:39.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:38:39.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:39.398 -07 000000438 INF: FPGA: Recv ZSGSRD 32810 17-03-17 23:38:39.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:39.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:39.408 -07 000000475 INF: FPGA: Recv ZSGSRD 32800 17-03-17 23:38:39.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:39.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:39.418 -07 000000576 INF: FPGA: Recv ZSGSRD 32804 17-03-17 23:38:39.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:39.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:39.428 -07 000000482 INF: FPGA: Recv ZSGSRD 32813 17-03-17 23:38:39.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:39.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:39.438 -07 000000480 INF: FPGA: Recv ZSGSRD 32812 17-03-17 23:38:39.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:39.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:39.448 -07 000000448 INF: FPGA: Recv ZSGSRD 32804 17-03-17 23:38:39.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:39.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:39.458 -07 000000475 INF: FPGA: Recv ZSGSRD 32802 17-03-17 23:38:39.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:39.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:39.468 -07 000000502 INF: FPGA: Recv ZSGSRD 32808 17-03-17 23:38:39.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:39.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:39.478 -07 000000561 INF: FPGA: Recv ZSGSRD 32808 17-03-17 23:38:39.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:38:39.488 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:38:39.488 -07 000000459 INF: FPGA: Recv ZPIEZORD 27658 17-03-17 23:38:39.498 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:39.498 -07 000000610 INF: Z Motor: Piezo is near 39.1 V (nominally 0 to 100 V), expect near 50.4 V, since DAC is at 5.036 V. Piezo Error = -11.3 V. 17-03-17 23:38:39.498 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -151.1 um, Read 10 ADC samples: Avg = 32807 (-150.3 uncal um), Error = 0.8 uncal um, Median = 32808 (-150.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 32800 (-150.2 uncal um), Max = 32813 (-150.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um) 17-03-17 23:38:39.498 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 32807, posNoise = 6, negNoise = 7 17-03-17 23:38:39.498 -07 000000610 INF: Z Motor: After move to -0.151087, error = 0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:38:39.498 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms) 17-03-17 23:38:39.498 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:38:39.498 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:38:39.498 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:38:39.498 -07 000000561 INF: Disarm and arm camera sensor 0: FullImageTriggered start. 17-03-17 23:38:39.498 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:38:39.498 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:38:39.498 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:38:39.498 -07 000000561 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start. 17-03-17 23:38:39.508 -07 000000561 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms. 17-03-17 23:38:39.508 -07 000000561 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start. 17-03-17 23:38:39.518 -07 000000561 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms. 17-03-17 23:38:39.518 -07 000000561 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms. 17-03-17 23:38:39.518 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera] 17-03-17 23:38:39.718 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 192 17-03-17 23:38:39.918 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 392 17-03-17 23:38:39.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392 17-03-17 23:38:39.918 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start. 17-03-17 23:38:39.918 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1077874736, 0x0, 314322768) start. 17-03-17 23:38:40.108 -07 000000480 INF: FPGA: Recv @CAMSNAP 586 17-03-17 23:38:40.108 -07 000000433 INF: FPGA: Recv CAMSNAP 17-03-17 23:38:40.108 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 586 ms to get response, and 590 ms overall 17-03-17 23:38:40.508 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1077874736, 0x0, 314322768) end. Duration was 587 ms. 17-03-17 23:38:40.508 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:38:40.508 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:38:40.508 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms. 17-03-17 23:38:40.708 -07 000000610 INF: ComputeBrenner start 17-03-17 23:38:40.718 -07 000000610 INF: Image SNR check: start 17-03-17 23:38:40.728 -07 000000610 INF: Image SNR check: image is Dark [peak (Max-Min)=16.22] 17-03-17 23:38:40.728 -07 000000610 INF: Scanning Z-Position: -0.149089 17-03-17 23:38:40.728 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 32568, sync = True, waitForSettling = True) 17-03-17 23:38:40.728 -07 000000610 INF: Z Motor: Moving to -0.149087 mm, started at -0.151082 mm, distance = 2.00 um 17-03-17 23:38:40.728 -07 000000610 INF: FPGA: Xmit ZDACW 32568\n [Z Motor] 17-03-17 23:38:40.728 -07 000000627 INF: FPGA: Recv ZDACW 17-03-17 23:38:40.738 -07 000000610 INF: FPGA: 'ZDACW 32568' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:38:40.738 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:38:40.738 -07 000000623 INF: FPGA: Recv ZDACR 32568 17-03-17 23:38:40.748 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:40.748 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:38:40.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:40.898 -07 000000459 INF: FPGA: Recv ZSGSRD 32497 17-03-17 23:38:40.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:38:40.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:40.908 -07 000000561 INF: FPGA: Recv ZSGSRD 32490 17-03-17 23:38:40.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:40.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:40.918 -07 000000623 INF: FPGA: Recv ZSGSRD 32490 17-03-17 23:38:40.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:40.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:40.928 -07 000000541 INF: FPGA: Recv ZSGSRD 32494 17-03-17 23:38:40.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:40.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:40.938 -07 000000618 INF: FPGA: Recv ZSGSRD 32503 17-03-17 23:38:40.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:40.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:40.948 -07 000000438 INF: FPGA: Recv ZSGSRD 32492 17-03-17 23:38:40.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:40.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:40.958 -07 000000433 INF: FPGA: Recv ZSGSRD 32488 17-03-17 23:38:40.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:40.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:40.968 -07 000000623 INF: FPGA: Recv ZSGSRD 32496 17-03-17 23:38:40.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:40.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:40.978 -07 000000576 INF: FPGA: Recv ZSGSRD 32499 17-03-17 23:38:40.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:40.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:40.988 -07 000000618 INF: FPGA: Recv ZSGSRD 32501 17-03-17 23:38:40.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:40.998 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:38:40.998 -07 000000547 INF: FPGA: Recv ZPIEZORD 27397 17-03-17 23:38:41.008 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:41.008 -07 000000610 INF: Z Motor: Piezo is near 38.5 V (nominally 0 to 100 V), expect near 49.7 V, since DAC is at 4.970 V. Piezo Error = -11.2 V. 17-03-17 23:38:41.008 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -149.1 um, Read 10 ADC samples: Avg = 32495 (-148.3 uncal um), Error = 0.8 uncal um, Median = 32495 (-148.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 32488 (-148.2 uncal um), Max = 32503 (-148.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um) 17-03-17 23:38:41.008 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 32495, posNoise = 8, negNoise = 7 17-03-17 23:38:41.008 -07 000000610 INF: Z Motor: After move to -0.149087, error = 0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:38:41.008 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms) 17-03-17 23:38:41.008 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:38:41.008 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:38:41.008 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:38:41.008 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:38:41.008 -07 000000618 INF: Disarm and arm camera sensor 0: FullImageTriggered start. 17-03-17 23:38:41.008 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:38:41.008 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:38:41.008 -07 000000618 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start. 17-03-17 23:38:41.018 -07 000000618 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 4 ms. 17-03-17 23:38:41.018 -07 000000618 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start. 17-03-17 23:38:41.028 -07 000000618 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 9 ms. 17-03-17 23:38:41.028 -07 000000618 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms. 17-03-17 23:38:41.028 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera] 17-03-17 23:38:41.228 -07 000000459 INF: FPGA: Recv @CAMSNAP turning led on 192 17-03-17 23:38:41.428 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 392 17-03-17 23:38:41.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392 17-03-17 23:38:41.428 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start. 17-03-17 23:38:41.428 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1129477224, 0x0, 314322768) start. 17-03-17 23:38:41.618 -07 000000627 INF: FPGA: Recv @CAMSNAP 585 17-03-17 23:38:41.618 -07 000000547 INF: FPGA: Recv CAMSNAP 17-03-17 23:38:41.618 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 583 ms to get response, and 589 ms overall 17-03-17 23:38:42.008 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1129477224, 0x0, 314322768) end. Duration was 587 ms. 17-03-17 23:38:42.008 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:38:42.018 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:38:42.018 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms. 17-03-17 23:38:42.088 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:38:42.128 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:38:42.328 -07 000000610 INF: ComputeBrenner start 17-03-17 23:38:42.338 -07 000000610 INF: Image SNR check: start 17-03-17 23:38:42.348 -07 000000610 INF: Image SNR check: image is Dark [peak (Max-Min)=16.42] 17-03-17 23:38:42.348 -07 000000610 INF: Scanning Z-Position: -0.147089 17-03-17 23:38:42.348 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 32132, sync = True, waitForSettling = True) 17-03-17 23:38:42.348 -07 000000610 INF: Z Motor: Moving to -0.147091 mm, started at -0.149078 mm, distance = 1.99 um 17-03-17 23:38:42.348 -07 000000610 INF: FPGA: Xmit ZDACW 32132\n [Z Motor] 17-03-17 23:38:42.348 -07 000000627 INF: FPGA: Recv ZDACW 17-03-17 23:38:42.358 -07 000000610 INF: FPGA: 'ZDACW 32132' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-17 23:38:42.358 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:38:42.358 -07 000000438 INF: FPGA: Recv ZDACR 32132 17-03-17 23:38:42.368 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:42.368 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:38:42.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:42.518 -07 000000433 INF: FPGA: Recv ZSGSRD 32186 17-03-17 23:38:42.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:38:42.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:42.528 -07 000000459 INF: FPGA: Recv ZSGSRD 32183 17-03-17 23:38:42.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:42.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:42.538 -07 000000541 INF: FPGA: Recv ZSGSRD 32186 17-03-17 23:38:42.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:42.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:42.548 -07 000000576 INF: FPGA: Recv ZSGSRD 32188 17-03-17 23:38:42.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:42.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:42.558 -07 000000512 INF: FPGA: Recv ZSGSRD 32185 17-03-17 23:38:42.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:42.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:42.568 -07 000000433 INF: FPGA: Recv ZSGSRD 32186 17-03-17 23:38:42.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:42.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:42.578 -07 000000480 INF: FPGA: Recv ZSGSRD 32187 17-03-17 23:38:42.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:42.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:42.588 -07 000000482 INF: FPGA: Recv ZSGSRD 32187 17-03-17 23:38:42.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:42.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:42.598 -07 000000627 INF: FPGA: Recv ZSGSRD 32187 17-03-17 23:38:42.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:42.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:42.608 -07 000000409 INF: FPGA: Recv ZSGSRD 32189 17-03-17 23:38:42.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:42.618 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:38:42.618 -07 000000433 INF: FPGA: Recv ZPIEZORD 27101 17-03-17 23:38:42.628 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:42.628 -07 000000610 INF: Z Motor: Piezo is near 37.9 V (nominally 0 to 100 V), expect near 49.0 V, since DAC is at 4.903 V. Piezo Error = -11.1 V. 17-03-17 23:38:42.628 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -147.1 um, Read 10 ADC samples: Avg = 32186 (-146.3 uncal um), Error = 0.8 uncal um, Median = 32186 (-146.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 32183 (-146.3 uncal um), Max = 32189 (-146.3 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um) 17-03-17 23:38:42.628 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 32186, posNoise = 3, negNoise = 3 17-03-17 23:38:42.628 -07 000000610 INF: Z Motor: After move to -0.147091, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:38:42.628 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms) 17-03-17 23:38:42.628 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:38:42.628 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:38:42.628 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:38:42.628 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:38:42.628 -07 000000502 INF: Disarm and arm camera sensor 0: FullImageTriggered start. 17-03-17 23:38:42.628 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:38:42.628 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:38:42.628 -07 000000502 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start. 17-03-17 23:38:42.638 -07 000000502 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms. 17-03-17 23:38:42.638 -07 000000502 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start. 17-03-17 23:38:42.648 -07 000000502 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms. 17-03-17 23:38:42.648 -07 000000502 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms. 17-03-17 23:38:42.648 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera] 17-03-17 23:38:42.848 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 192 17-03-17 23:38:43.048 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 392 17-03-17 23:38:43.048 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392 17-03-17 23:38:43.048 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start. 17-03-17 23:38:43.048 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) start. 17-03-17 23:38:43.238 -07 000000627 INF: FPGA: Recv @CAMSNAP 585 17-03-17 23:38:43.238 -07 000000618 INF: FPGA: Recv CAMSNAP 17-03-17 23:38:43.238 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 586 ms to get response, and 589 ms overall 17-03-17 23:38:43.638 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) end. Duration was 587 ms. 17-03-17 23:38:43.638 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:38:43.638 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:38:43.638 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 593 ms. 17-03-17 23:38:43.818 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 4.007176, 17-03-17 23:38:43.838 -07 000000610 INF: ComputeBrenner start 17-03-17 23:38:43.848 -07 000000610 INF: Image SNR check: start 17-03-17 23:38:43.858 -07 000000610 INF: Image SNR check: image is Dark [peak (Max-Min)=16.32] 17-03-17 23:38:43.858 -07 000000610 INF: Scanning Z-Position: -0.145089 17-03-17 23:38:43.858 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 31695, sync = True, waitForSettling = True) 17-03-17 23:38:43.858 -07 000000610 INF: Z Motor: Moving to -0.145090 mm, started at -0.147093 mm, distance = 2.00 um 17-03-17 23:38:43.858 -07 000000610 INF: FPGA: Xmit ZDACW 31695\n [Z Motor] 17-03-17 23:38:43.858 -07 000000576 INF: FPGA: Recv ZDACW 17-03-17 23:38:43.868 -07 000000610 INF: FPGA: 'ZDACW 31695' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 23:38:43.878 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:38:43.878 -07 000000547 INF: FPGA: Recv ZDACR 31695 17-03-17 23:38:43.888 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-17 23:38:43.888 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:38:44.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:44.038 -07 000000486 INF: FPGA: Recv ZSGSRD 31881 17-03-17 23:38:44.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:38:44.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:44.048 -07 000000480 INF: FPGA: Recv ZSGSRD 31878 17-03-17 23:38:44.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:44.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:44.058 -07 000000627 INF: FPGA: Recv ZSGSRD 31870 17-03-17 23:38:44.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:44.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:44.068 -07 000000448 INF: FPGA: Recv ZSGSRD 31873 17-03-17 23:38:44.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:44.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:44.078 -07 000000502 INF: FPGA: Recv ZSGSRD 31876 17-03-17 23:38:44.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:44.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:44.088 -07 000000438 INF: FPGA: Recv ZSGSRD 31877 17-03-17 23:38:44.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:44.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:44.098 -07 000000480 INF: FPGA: Recv ZSGSRD 31876 17-03-17 23:38:44.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:44.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:44.108 -07 000000627 INF: FPGA: Recv ZSGSRD 31876 17-03-17 23:38:44.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:44.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:44.118 -07 000000448 INF: FPGA: Recv ZSGSRD 31875 17-03-17 23:38:44.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:44.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:44.128 -07 000000502 INF: FPGA: Recv ZSGSRD 31874 17-03-17 23:38:44.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:44.138 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:38:44.138 -07 000000541 INF: FPGA: Recv ZPIEZORD 26814 17-03-17 23:38:44.148 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:44.148 -07 000000610 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 48.4 V, since DAC is at 4.836 V. Piezo Error = -11.1 V. 17-03-17 23:38:44.148 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -145.1 um, Read 10 ADC samples: Avg = 31876 (-144.3 uncal um), Error = 0.8 uncal um, Median = 31876 (-144.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 31870 (-144.2 uncal um), Max = 31881 (-144.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um) 17-03-17 23:38:44.148 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31876, posNoise = 5, negNoise = 6 17-03-17 23:38:44.148 -07 000000610 INF: Z Motor: After move to -0.145090, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:38:44.148 -07 000000610 INF: Z Motor: MoveAbsStepped took 288 ms) 17-03-17 23:38:44.148 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:38:44.148 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:38:44.148 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:38:44.148 -07 000000438 INF: Disarm and arm camera sensor 0: FullImageTriggered start. 17-03-17 23:38:44.148 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:38:44.148 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:38:44.148 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:38:44.148 -07 000000438 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start. 17-03-17 23:38:44.158 -07 000000438 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms. 17-03-17 23:38:44.158 -07 000000438 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start. 17-03-17 23:38:44.168 -07 000000438 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms. 17-03-17 23:38:44.168 -07 000000438 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 14 ms. 17-03-17 23:38:44.168 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera] 17-03-17 23:38:44.368 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 192 17-03-17 23:38:44.568 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 392 17-03-17 23:38:44.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392 17-03-17 23:38:44.568 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start. 17-03-17 23:38:44.568 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1077874736, 0x0, 314322768) start. 17-03-17 23:38:44.758 -07 000000433 INF: FPGA: Recv @CAMSNAP 588 17-03-17 23:38:44.758 -07 000000448 INF: FPGA: Recv CAMSNAP 17-03-17 23:38:44.758 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 587 ms to get response, and 592 ms overall 17-03-17 23:38:45.158 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1077874736, 0x0, 314322768) end. Duration was 587 ms. 17-03-17 23:38:45.158 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:38:45.158 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:38:45.158 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 592 ms. 17-03-17 23:38:45.358 -07 000000610 INF: ComputeBrenner start 17-03-17 23:38:45.368 -07 000000610 INF: Image SNR check: start 17-03-17 23:38:45.378 -07 000000610 INF: Image SNR check: image is Dark [peak (Max-Min)=16.40] 17-03-17 23:38:45.378 -07 000000610 INF: Scanning Z-Position: -0.143089 17-03-17 23:38:45.378 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 31258, sync = True, waitForSettling = True) 17-03-17 23:38:45.378 -07 000000610 INF: Z Motor: Moving to -0.143090 mm, started at -0.145102 mm, distance = 2.01 um 17-03-17 23:38:45.378 -07 000000610 INF: FPGA: Xmit ZDACW 31258\n [Z Motor] 17-03-17 23:38:45.378 -07 000000541 INF: FPGA: Recv ZDACW 17-03-17 23:38:45.388 -07 000000610 INF: FPGA: 'ZDACW 31258' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:38:45.388 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:38:45.388 -07 000000475 INF: FPGA: Recv ZDACR 31258 17-03-17 23:38:45.398 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:45.398 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:38:45.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:45.548 -07 000000618 INF: FPGA: Recv ZSGSRD 31570 17-03-17 23:38:45.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:38:45.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:45.558 -07 000000623 INF: FPGA: Recv ZSGSRD 31551 17-03-17 23:38:45.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:45.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:45.568 -07 000000438 INF: FPGA: Recv ZSGSRD 31559 17-03-17 23:38:45.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:45.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:45.578 -07 000000459 INF: FPGA: Recv ZSGSRD 31568 17-03-17 23:38:45.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:45.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:45.588 -07 000000433 INF: FPGA: Recv ZSGSRD 31575 17-03-17 23:38:45.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:45.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:45.598 -07 000000547 INF: FPGA: Recv ZSGSRD 31555 17-03-17 23:38:45.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:45.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:45.608 -07 000000409 INF: FPGA: Recv ZSGSRD 31565 17-03-17 23:38:45.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:45.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:45.618 -07 000000618 INF: FPGA: Recv ZSGSRD 31565 17-03-17 23:38:45.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:45.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:45.628 -07 000000541 INF: FPGA: Recv ZSGSRD 31560 17-03-17 23:38:45.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:45.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:45.638 -07 000000438 INF: FPGA: Recv ZSGSRD 31561 17-03-17 23:38:45.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:45.648 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:38:45.648 -07 000000486 INF: FPGA: Recv ZPIEZORD 26517 17-03-17 23:38:45.658 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:45.658 -07 000000610 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 47.7 V, since DAC is at 4.770 V. Piezo Error = -11.0 V. 17-03-17 23:38:45.658 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -143.1 um, Read 10 ADC samples: Avg = 31563 (-142.3 uncal um), Error = 0.8 uncal um, Median = 31563 (-142.3 uncal um), StdDev = 7 (0.0 uncal um), Range = 24 (0.2 uncal um), Min = 31551 (-142.2 uncal um), Max = 31575 (-142.4 uncal um), Pos Noise = 12 (0.1 uncal um), Neg Noise = 12 (0.1 uncal um) 17-03-17 23:38:45.658 -07 000000610 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31563, posNoise = 12, negNoise = 12 17-03-17 23:38:45.658 -07 000000610 INF: Z Motor: After move to -0.143090, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:38:45.658 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms) 17-03-17 23:38:45.658 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:38:45.658 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:38:45.658 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:38:45.658 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:38:45.658 -07 000000438 INF: Disarm and arm camera sensor 0: FullImageTriggered start. 17-03-17 23:38:45.658 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:38:45.658 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:38:45.658 -07 000000438 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start. 17-03-17 23:38:45.668 -07 000000438 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms. 17-03-17 23:38:45.668 -07 000000438 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start. 17-03-17 23:38:45.668 -07 000000438 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 6 ms. 17-03-17 23:38:45.668 -07 000000438 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 11 ms. 17-03-17 23:38:45.678 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera] 17-03-17 23:38:45.878 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 192 17-03-17 23:38:46.068 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 392 17-03-17 23:38:46.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392 17-03-17 23:38:46.078 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start. 17-03-17 23:38:46.078 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1129477224, 0x0, 314322768) start. 17-03-17 23:38:46.268 -07 000000541 INF: FPGA: Recv @CAMSNAP 585 17-03-17 23:38:46.268 -07 000000459 INF: FPGA: Recv CAMSNAP 17-03-17 23:38:46.268 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 582 ms to get response, and 589 ms overall 17-03-17 23:38:46.658 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1129477224, 0x0, 314322768) end. Duration was 588 ms. 17-03-17 23:38:46.658 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:38:46.668 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:38:46.668 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 592 ms. 17-03-17 23:38:46.978 -07 000000610 INF: ComputeBrenner start 17-03-17 23:38:46.988 -07 000000610 INF: Image SNR check: start 17-03-17 23:38:46.998 -07 000000610 INF: Image SNR check: image is Dark [peak (Max-Min)=16.56] 17-03-17 23:38:46.998 -07 000000610 INF: Scanning Z-Position: -0.141089 17-03-17 23:38:46.998 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 30821, sync = True, waitForSettling = True) 17-03-17 23:38:46.998 -07 000000610 INF: Z Motor: Moving to -0.141089 mm, started at -0.143091 mm, distance = 2.00 um 17-03-17 23:38:46.998 -07 000000610 INF: FPGA: Xmit ZDACW 30821\n [Z Motor] 17-03-17 23:38:46.998 -07 000000547 INF: FPGA: Recv ZDACW 17-03-17 23:38:47.008 -07 000000610 INF: FPGA: 'ZDACW 30821' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-17 23:38:47.008 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:38:47.008 -07 000000482 INF: FPGA: Recv ZDACR 30821 17-03-17 23:38:47.018 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:47.018 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:38:47.088 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:38:47.088 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:38:47.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:47.168 -07 000000480 INF: FPGA: Recv ZSGSRD 31250 17-03-17 23:38:47.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:38:47.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:47.178 -07 000000482 INF: FPGA: Recv ZSGSRD 31255 17-03-17 23:38:47.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:47.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:47.188 -07 000000512 INF: FPGA: Recv ZSGSRD 31249 17-03-17 23:38:47.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:47.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:47.198 -07 000000433 INF: FPGA: Recv ZSGSRD 31255 17-03-17 23:38:47.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:47.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:47.208 -07 000000623 INF: FPGA: Recv ZSGSRD 31253 17-03-17 23:38:47.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:47.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:47.218 -07 000000480 INF: FPGA: Recv ZSGSRD 31242 17-03-17 23:38:47.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:47.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:47.228 -07 000000459 INF: FPGA: Recv ZSGSRD 31258 17-03-17 23:38:47.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:47.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:47.238 -07 000000512 INF: FPGA: Recv ZSGSRD 31256 17-03-17 23:38:47.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:38:47.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:47.248 -07 000000502 INF: FPGA: Recv ZSGSRD 31258 17-03-17 23:38:47.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:47.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:47.258 -07 000000561 INF: FPGA: Recv ZSGSRD 31251 17-03-17 23:38:47.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:47.268 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:38:47.268 -07 000000486 INF: FPGA: Recv ZPIEZORD 26268 17-03-17 23:38:47.278 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:47.278 -07 000000610 INF: Z Motor: Piezo is near 36.1 V (nominally 0 to 100 V), expect near 47.0 V, since DAC is at 4.703 V. Piezo Error = -10.9 V. 17-03-17 23:38:47.278 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -141.1 um, Read 10 ADC samples: Avg = 31253 (-140.3 uncal um), Error = 0.8 uncal um, Median = 31254 (-140.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 31242 (-140.2 uncal um), Max = 31258 (-140.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 11 (0.1 uncal um) 17-03-17 23:38:47.278 -07 000000610 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31253, posNoise = 5, negNoise = 11 17-03-17 23:38:47.278 -07 000000610 INF: Z Motor: After move to -0.141089, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:38:47.278 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms) 17-03-17 23:38:47.278 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:38:47.278 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:38:47.278 -07 000000409 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:38:47.278 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:38:47.278 -07 000000547 INF: Disarm and arm camera sensor 0: FullImageTriggered start. 17-03-17 23:38:47.278 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:38:47.278 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:38:47.278 -07 000000547 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start. 17-03-17 23:38:47.288 -07 000000547 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms. 17-03-17 23:38:47.288 -07 000000547 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start. 17-03-17 23:38:47.298 -07 000000547 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms. 17-03-17 23:38:47.298 -07 000000547 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms. 17-03-17 23:38:47.298 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera] 17-03-17 23:38:47.498 -07 000000433 INF: FPGA: Recv @CAMSNAP turning led on 192 17-03-17 23:38:47.698 -07 000000409 INF: FPGA: Recv @CAMSNAP img rdy 392 17-03-17 23:38:47.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392 17-03-17 23:38:47.698 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start. 17-03-17 23:38:47.698 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) start. 17-03-17 23:38:47.888 -07 000000541 INF: FPGA: Recv @CAMSNAP 585 17-03-17 23:38:47.888 -07 000000409 INF: FPGA: Recv CAMSNAP 17-03-17 23:38:47.888 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 585 ms to get response, and 589 ms overall 17-03-17 23:38:48.288 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) end. Duration was 588 ms. 17-03-17 23:38:48.288 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:38:48.288 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:38:48.288 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 593 ms. 17-03-17 23:38:48.488 -07 000000610 INF: ComputeBrenner start 17-03-17 23:38:48.498 -07 000000610 INF: Image SNR check: start 17-03-17 23:38:48.508 -07 000000610 INF: Image SNR check: image is Dark [peak (Max-Min)=16.91] 17-03-17 23:38:48.508 -07 000000610 INF: Scanning Z-Position: -0.139089 17-03-17 23:38:48.508 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 30384, sync = True, waitForSettling = True) 17-03-17 23:38:48.508 -07 000000610 INF: Z Motor: Moving to -0.139089 mm, started at -0.141099 mm, distance = 2.01 um 17-03-17 23:38:48.508 -07 000000610 INF: FPGA: Xmit ZDACW 30384\n [Z Motor] 17-03-17 23:38:48.508 -07 000000482 INF: FPGA: Recv ZDACW 17-03-17 23:38:48.518 -07 000000610 INF: FPGA: 'ZDACW 30384' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:38:48.518 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:38:48.518 -07 000000409 INF: FPGA: Recv ZDACR 30384 17-03-17 23:38:48.528 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:48.528 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:38:48.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:48.678 -07 000000480 INF: FPGA: Recv ZSGSRD 30941 17-03-17 23:38:48.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:38:48.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:48.688 -07 000000438 INF: FPGA: Recv ZSGSRD 30937 17-03-17 23:38:48.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:48.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:48.698 -07 000000627 INF: FPGA: Recv ZSGSRD 30943 17-03-17 23:38:48.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:48.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:48.708 -07 000000618 INF: FPGA: Recv ZSGSRD 30943 17-03-17 23:38:48.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:48.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:48.718 -07 000000475 INF: FPGA: Recv ZSGSRD 30937 17-03-17 23:38:48.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:48.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:48.728 -07 000000480 INF: FPGA: Recv ZSGSRD 30943 17-03-17 23:38:48.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:48.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:48.738 -07 000000433 INF: FPGA: Recv ZSGSRD 30942 17-03-17 23:38:48.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:38:48.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:48.748 -07 000000627 INF: FPGA: Recv ZSGSRD 30940 17-03-17 23:38:48.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:48.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:48.758 -07 000000618 INF: FPGA: Recv ZSGSRD 30938 17-03-17 23:38:48.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:38:48.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:48.768 -07 000000576 INF: FPGA: Recv ZSGSRD 30939 17-03-17 23:38:48.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:48.778 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:38:48.778 -07 000000480 INF: FPGA: Recv ZPIEZORD 25958 17-03-17 23:38:48.788 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:48.788 -07 000000610 INF: Z Motor: Piezo is near 35.5 V (nominally 0 to 100 V), expect near 46.4 V, since DAC is at 4.636 V. Piezo Error = -10.9 V. 17-03-17 23:38:48.788 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.1 um, Read 10 ADC samples: Avg = 30940 (-138.3 uncal um), Error = 0.8 uncal um, Median = 30940 (-138.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 30937 (-138.3 uncal um), Max = 30943 (-138.3 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um) 17-03-17 23:38:48.788 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30940, posNoise = 3, negNoise = 3 17-03-17 23:38:48.788 -07 000000610 INF: Z Motor: After move to -0.139089, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:38:48.788 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms) 17-03-17 23:38:48.788 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:38:48.788 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:38:48.788 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:38:48.788 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:38:48.788 -07 000000547 INF: Disarm and arm camera sensor 0: FullImageTriggered start. 17-03-17 23:38:48.788 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:38:48.788 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:38:48.788 -07 000000547 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start. 17-03-17 23:38:48.798 -07 000000547 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms. 17-03-17 23:38:48.798 -07 000000547 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start. 17-03-17 23:38:48.808 -07 000000547 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms. 17-03-17 23:38:48.808 -07 000000547 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms. 17-03-17 23:38:48.808 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera] 17-03-17 23:38:49.008 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 192 17-03-17 23:38:49.178 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 3.990831, 17-03-17 23:38:49.208 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 392 17-03-17 23:38:49.208 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392 17-03-17 23:38:49.208 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start. 17-03-17 23:38:49.208 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1077874736, 0x0, 314322768) start. 17-03-17 23:38:49.398 -07 000000409 INF: FPGA: Recv @CAMSNAP 585 17-03-17 23:38:49.398 -07 000000482 INF: FPGA: Recv CAMSNAP 17-03-17 23:38:49.398 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 585 ms to get response, and 589 ms overall 17-03-17 23:38:49.798 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1077874736, 0x0, 314322768) end. Duration was 589 ms. 17-03-17 23:38:49.798 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:38:49.798 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:38:49.798 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 594 ms. 17-03-17 23:38:49.998 -07 000000610 INF: ComputeBrenner start 17-03-17 23:38:50.008 -07 000000610 INF: Image SNR check: start 17-03-17 23:38:50.018 -07 000000610 INF: Image SNR check: image is Dark [peak (Max-Min)=16.80] 17-03-17 23:38:50.018 -07 000000610 INF: Scanning Z-Position: -0.137089 17-03-17 23:38:50.018 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29947, sync = True, waitForSettling = True) 17-03-17 23:38:50.018 -07 000000610 INF: Z Motor: Moving to -0.137089 mm, started at -0.139088 mm, distance = 2.00 um 17-03-17 23:38:50.018 -07 000000610 INF: FPGA: Xmit ZDACW 29947\n [Z Motor] 17-03-17 23:38:50.018 -07 000000623 INF: FPGA: Recv ZDACW 17-03-17 23:38:50.028 -07 000000610 INF: FPGA: 'ZDACW 29947' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:38:50.028 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:38:50.028 -07 000000627 INF: FPGA: Recv ZDACR 29947 17-03-17 23:38:50.038 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:50.038 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:38:50.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:50.188 -07 000000480 INF: FPGA: Recv ZSGSRD 30625 17-03-17 23:38:50.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:38:50.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:50.198 -07 000000448 INF: FPGA: Recv ZSGSRD 30636 17-03-17 23:38:50.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:50.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:50.208 -07 000000618 INF: FPGA: Recv ZSGSRD 30628 17-03-17 23:38:50.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:50.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:50.218 -07 000000433 INF: FPGA: Recv ZSGSRD 30635 17-03-17 23:38:50.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:50.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:50.228 -07 000000486 INF: FPGA: Recv ZSGSRD 30631 17-03-17 23:38:50.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:50.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:50.238 -07 000000448 INF: FPGA: Recv ZSGSRD 30629 17-03-17 23:38:50.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:50.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:50.248 -07 000000576 INF: FPGA: Recv ZSGSRD 30627 17-03-17 23:38:50.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:50.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:50.258 -07 000000459 INF: FPGA: Recv ZSGSRD 30631 17-03-17 23:38:50.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:50.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:50.268 -07 000000627 INF: FPGA: Recv ZSGSRD 30629 17-03-17 23:38:50.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:50.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:50.278 -07 000000486 INF: FPGA: Recv ZSGSRD 30627 17-03-17 23:38:50.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:50.288 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:38:50.288 -07 000000618 INF: FPGA: Recv ZPIEZORD 25713 17-03-17 23:38:50.298 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:50.298 -07 000000610 INF: Z Motor: Piezo is near 34.9 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.570 V. Piezo Error = -10.8 V. 17-03-17 23:38:50.298 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.1 um, Read 10 ADC samples: Avg = 30630 (-136.3 uncal um), Error = 0.8 uncal um, Median = 30629 (-136.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30625 (-136.3 uncal um), Max = 30636 (-136.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-17 23:38:50.298 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30630, posNoise = 6, negNoise = 5 17-03-17 23:38:50.298 -07 000000610 INF: Z Motor: After move to -0.137089, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:38:50.298 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms) 17-03-17 23:38:50.298 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:38:50.298 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:38:50.298 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:38:50.298 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:38:50.298 -07 000000486 INF: Disarm and arm camera sensor 0: FullImageTriggered start. 17-03-17 23:38:50.298 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:38:50.298 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:38:50.298 -07 000000486 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start. 17-03-17 23:38:50.308 -07 000000486 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms. 17-03-17 23:38:50.308 -07 000000486 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start. 17-03-17 23:38:50.318 -07 000000486 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms. 17-03-17 23:38:50.318 -07 000000486 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms. 17-03-17 23:38:50.318 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera] 17-03-17 23:38:50.518 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 192 17-03-17 23:38:50.718 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 392 17-03-17 23:38:50.718 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392 17-03-17 23:38:50.718 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start. 17-03-17 23:38:50.718 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1129477224, 0x0, 314322768) start. 17-03-17 23:38:50.908 -07 000000438 INF: FPGA: Recv @CAMSNAP 585 17-03-17 23:38:50.908 -07 000000512 INF: FPGA: Recv CAMSNAP 17-03-17 23:38:50.908 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 584 ms to get response, and 589 ms overall 17-03-17 23:38:51.298 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1129477224, 0x0, 314322768) end. Duration was 586 ms. 17-03-17 23:38:51.298 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:38:51.308 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:38:51.308 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms. 17-03-17 23:38:51.618 -07 000000610 INF: ComputeBrenner start 17-03-17 23:38:51.628 -07 000000610 INF: Image SNR check: start 17-03-17 23:38:51.638 -07 000000610 INF: Image SNR check: image is Dark [peak (Max-Min)=16.44] 17-03-17 23:38:51.638 -07 000000610 INF: Scanning Z-Position: -0.135089 17-03-17 23:38:51.638 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29510, sync = True, waitForSettling = True) 17-03-17 23:38:51.638 -07 000000610 INF: Z Motor: Moving to -0.135088 mm, started at -0.137097 mm, distance = 2.01 um 17-03-17 23:38:51.638 -07 000000610 INF: FPGA: Xmit ZDACW 29510\n [Z Motor] 17-03-17 23:38:51.638 -07 000000448 INF: FPGA: Recv ZDACW 17-03-17 23:38:51.648 -07 000000610 INF: FPGA: 'ZDACW 29510' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-17 23:38:51.648 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:38:51.648 -07 000000409 INF: FPGA: Recv ZDACR 29510 17-03-17 23:38:51.658 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:51.658 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:38:51.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:51.808 -07 000000623 INF: FPGA: Recv ZSGSRD 30323 17-03-17 23:38:51.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:38:51.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:51.818 -07 000000627 INF: FPGA: Recv ZSGSRD 30318 17-03-17 23:38:51.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:51.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:51.828 -07 000000486 INF: FPGA: Recv ZSGSRD 30312 17-03-17 23:38:51.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:51.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:51.838 -07 000000438 INF: FPGA: Recv ZSGSRD 30315 17-03-17 23:38:51.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:51.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:51.848 -07 000000502 INF: FPGA: Recv ZSGSRD 30318 17-03-17 23:38:51.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:51.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:51.858 -07 000000512 INF: FPGA: Recv ZSGSRD 30316 17-03-17 23:38:51.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:51.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:51.868 -07 000000627 INF: FPGA: Recv ZSGSRD 30316 17-03-17 23:38:51.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:51.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:51.878 -07 000000448 INF: FPGA: Recv ZSGSRD 30322 17-03-17 23:38:51.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:51.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:51.888 -07 000000438 INF: FPGA: Recv ZSGSRD 30316 17-03-17 23:38:51.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:51.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:51.898 -07 000000502 INF: FPGA: Recv ZSGSRD 30318 17-03-17 23:38:51.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:51.908 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:38:51.908 -07 000000623 INF: FPGA: Recv ZPIEZORD 25417 17-03-17 23:38:51.918 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:51.918 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.503 V. Piezo Error = -10.7 V. 17-03-17 23:38:51.918 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.1 um, Read 10 ADC samples: Avg = 30317 (-134.3 uncal um), Error = 0.8 uncal um, Median = 30317 (-134.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30312 (-134.3 uncal um), Max = 30323 (-134.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-17 23:38:51.918 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30317, posNoise = 6, negNoise = 5 17-03-17 23:38:51.918 -07 000000610 INF: Z Motor: After move to -0.135088, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:38:51.918 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms) 17-03-17 23:38:51.918 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:38:51.918 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:38:51.918 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:38:51.918 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:38:51.918 -07 000000576 INF: Disarm and arm camera sensor 0: FullImageTriggered start. 17-03-17 23:38:51.918 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:38:51.928 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:38:51.928 -07 000000576 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start. 17-03-17 23:38:51.928 -07 000000576 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms. 17-03-17 23:38:51.928 -07 000000576 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start. 17-03-17 23:38:51.938 -07 000000576 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms. 17-03-17 23:38:51.938 -07 000000576 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 14 ms. 17-03-17 23:38:51.938 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera] 17-03-17 23:38:52.088 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:38:52.088 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:38:52.138 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 192 17-03-17 23:38:52.338 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 392 17-03-17 23:38:52.338 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392 17-03-17 23:38:52.338 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start. 17-03-17 23:38:52.338 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) start. 17-03-17 23:38:52.528 -07 000000502 INF: FPGA: Recv @CAMSNAP 585 17-03-17 23:38:52.528 -07 000000541 INF: FPGA: Recv CAMSNAP 17-03-17 23:38:52.528 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 585 ms to get response, and 589 ms overall 17-03-17 23:38:52.928 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) end. Duration was 587 ms. 17-03-17 23:38:52.928 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:38:52.928 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:38:52.928 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms. 17-03-17 23:38:53.128 -07 000000610 INF: ComputeBrenner start 17-03-17 23:38:53.138 -07 000000610 INF: Image SNR check: start 17-03-17 23:38:53.148 -07 000000610 INF: Image SNR check: image is Dark [peak (Max-Min)=17.12] 17-03-17 23:38:53.148 -07 000000610 INF: Scanning Z-Position: -0.133089 17-03-17 23:38:53.148 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29073, sync = True, waitForSettling = True) 17-03-17 23:38:53.148 -07 000000610 INF: Z Motor: Moving to -0.133088 mm, started at -0.135086 mm, distance = 2.00 um 17-03-17 23:38:53.148 -07 000000610 INF: FPGA: Xmit ZDACW 29073\n [Z Motor] 17-03-17 23:38:53.148 -07 000000482 INF: FPGA: Recv ZDACW 17-03-17 23:38:53.158 -07 000000610 INF: FPGA: 'ZDACW 29073' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:38:53.158 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:38:53.158 -07 000000475 INF: FPGA: Recv ZDACR 29073 17-03-17 23:38:53.168 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:53.168 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:38:53.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:53.318 -07 000000433 INF: FPGA: Recv ZSGSRD 30007 17-03-17 23:38:53.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:53.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:53.328 -07 000000547 INF: FPGA: Recv ZSGSRD 30009 17-03-17 23:38:53.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:53.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:53.338 -07 000000623 INF: FPGA: Recv ZSGSRD 30009 17-03-17 23:38:53.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:53.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:53.348 -07 000000482 INF: FPGA: Recv ZSGSRD 30003 17-03-17 23:38:53.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:53.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:53.358 -07 000000627 INF: FPGA: Recv ZSGSRD 30004 17-03-17 23:38:53.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:53.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:53.368 -07 000000576 INF: FPGA: Recv ZSGSRD 30004 17-03-17 23:38:53.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:53.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:53.378 -07 000000512 INF: FPGA: Recv ZSGSRD 30007 17-03-17 23:38:53.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:53.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:53.388 -07 000000623 INF: FPGA: Recv ZSGSRD 30006 17-03-17 23:38:53.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:53.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:53.398 -07 000000482 INF: FPGA: Recv ZSGSRD 30003 17-03-17 23:38:53.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:53.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:53.408 -07 000000627 INF: FPGA: Recv ZSGSRD 30006 17-03-17 23:38:53.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:53.418 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:38:53.418 -07 000000576 INF: FPGA: Recv ZPIEZORD 25131 17-03-17 23:38:53.428 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:53.428 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.436 V. Piezo Error = -10.7 V. 17-03-17 23:38:53.428 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.1 um, Read 10 ADC samples: Avg = 30006 (-132.3 uncal um), Error = 0.8 uncal um, Median = 30006 (-132.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 30003 (-132.3 uncal um), Max = 30009 (-132.3 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um) 17-03-17 23:38:53.428 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30006, posNoise = 3, negNoise = 3 17-03-17 23:38:53.428 -07 000000610 INF: Z Motor: After move to -0.133088, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:38:53.428 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms) 17-03-17 23:38:53.428 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:38:53.428 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:38:53.428 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:38:53.428 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:38:53.428 -07 000000486 INF: Disarm and arm camera sensor 0: FullImageTriggered start. 17-03-17 23:38:53.428 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:38:53.428 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:38:53.428 -07 000000486 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start. 17-03-17 23:38:53.438 -07 000000486 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms. 17-03-17 23:38:53.438 -07 000000486 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start. 17-03-17 23:38:53.448 -07 000000486 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms. 17-03-17 23:38:53.448 -07 000000486 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 14 ms. 17-03-17 23:38:53.448 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 200\n [Camera] 17-03-17 23:38:53.648 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 192 17-03-17 23:38:53.848 -07 000000482 INF: FPGA: Recv @CAMSNAP img rdy 392 17-03-17 23:38:53.848 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 392 17-03-17 23:38:53.848 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start. 17-03-17 23:38:53.848 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1077874736, 0x0, 314322768) start. 17-03-17 23:38:54.038 -07 000000459 INF: FPGA: Recv @CAMSNAP 585 17-03-17 23:38:54.038 -07 000000618 INF: FPGA: Recv CAMSNAP 17-03-17 23:38:54.038 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 200' command took 1 ms to send, 583 ms to get response, and 589 ms overall 17-03-17 23:38:54.428 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1077874736, 0x0, 314322768) end. Duration was 586 ms. 17-03-17 23:38:54.428 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:38:54.438 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:38:54.438 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms. 17-03-17 23:38:54.538 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 3.99219, 17-03-17 23:38:54.638 -07 000000610 INF: ComputeBrenner start 17-03-17 23:38:54.648 -07 000000610 INF: Image SNR check: start 17-03-17 23:38:54.658 -07 000000610 INF: Image SNR check: image is Dark [peak (Max-Min)=17.00] 17-03-17 23:38:54.658 -07 000000610 INF: Through-focus: Z pos. [um] vs. Focus metric 17-03-17 23:38:54.658 -07 000000610 INF: -213.089 2.081368 17-03-17 23:38:54.658 -07 000000610 INF: -211.089 2.085848 17-03-17 23:38:54.658 -07 000000610 INF: -209.089 2.087477 17-03-17 23:38:54.658 -07 000000610 INF: -207.089 2.091854 17-03-17 23:38:54.658 -07 000000610 INF: -205.089 2.084895 17-03-17 23:38:54.658 -07 000000610 INF: -203.089 2.081372 17-03-17 23:38:54.658 -07 000000610 INF: -201.089 2.097454 17-03-17 23:38:54.658 -07 000000610 INF: -199.089 2.083992 17-03-17 23:38:54.658 -07 000000610 INF: -197.089 2.091542 17-03-17 23:38:54.658 -07 000000610 INF: -195.089 2.084538 17-03-17 23:38:54.658 -07 000000610 INF: -193.089 2.087184 17-03-17 23:38:54.658 -07 000000610 INF: -191.089 2.092303 17-03-17 23:38:54.658 -07 000000610 INF: -189.089 2.095242 17-03-17 23:38:54.658 -07 000000610 INF: -187.089 2.096612 17-03-17 23:38:54.658 -07 000000610 INF: -185.089 2.090622 17-03-17 23:38:54.658 -07 000000610 INF: -183.089 2.096266 17-03-17 23:38:54.658 -07 000000610 INF: -181.089 2.093169 17-03-17 23:38:54.658 -07 000000610 INF: -179.089 2.104896 17-03-17 23:38:54.658 -07 000000610 INF: -177.089 2.139734 17-03-17 23:38:54.658 -07 000000610 INF: -175.089 2.444263 17-03-17 23:38:54.658 -07 000000610 INF: -173.089 6.17331 17-03-17 23:38:54.658 -07 000000610 INF: -171.089 3.030215 17-03-17 23:38:54.658 -07 000000610 INF: -169.089 2.143149 17-03-17 23:38:54.658 -07 000000610 INF: -167.089 2.097155 17-03-17 23:38:54.658 -07 000000610 INF: -165.089 2.092816 17-03-17 23:38:54.658 -07 000000610 INF: -163.089 2.093225 17-03-17 23:38:54.658 -07 000000610 INF: -161.089 2.098047 17-03-17 23:38:54.658 -07 000000610 INF: -159.089 2.094573 17-03-17 23:38:54.658 -07 000000610 INF: -157.089 2.096432 17-03-17 23:38:54.658 -07 000000610 INF: -155.089 2.100553 17-03-17 23:38:54.658 -07 000000610 INF: -153.089 2.103158 17-03-17 23:38:54.658 -07 000000610 INF: -151.089 2.09946 17-03-17 23:38:54.658 -07 000000610 INF: -149.089 2.105357 17-03-17 23:38:54.658 -07 000000610 INF: -147.089 2.106946 17-03-17 23:38:54.658 -07 000000610 INF: -145.089 2.099518 17-03-17 23:38:54.658 -07 000000610 INF: -143.089 2.101018 17-03-17 23:38:54.658 -07 000000610 INF: -141.089 2.097187 17-03-17 23:38:54.658 -07 000000610 INF: -139.089 2.102414 17-03-17 23:38:54.658 -07 000000610 INF: -137.089 2.102583 17-03-17 23:38:54.658 -07 000000610 INF: -135.089 2.106835 17-03-17 23:38:54.658 -07 000000610 INF: -133.089 2.105414 17-03-17 23:38:54.658 -07 000000610 INF: Best-focus Z [um]: -172.8709 17-03-17 23:38:54.658 -07 000000610 INF: Exception messsage: Low SNR condition detected in the through-focus images 17-03-17 23:38:54.658 -07 000000610 INF: =================== Cycle #77, Imaging =================== 17-03-17 23:38:54.668 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 59.91064453125, Z-Position -0.133088261536814. ------ 17-03-17 23:38:54.668 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:38:54.668 -07 000000541 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17887 mm 17-03-17 23:38:54.668 -07 000000541 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 23:38:54.668 -07 000000502 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:38:54.668 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True) 17-03-17 23:38:54.668 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 39074, sync = True, waitForSettling = False) 17-03-17 23:38:54.668 -07 000000480 INF: Y Motor: Moving to 59.9126 mm, started at 59.9106 mm, delta = 0.0020 mm 17-03-17 23:38:54.668 -07 000000561 INF: Z Motor: Moving to -0.178869 mm, started at -0.133088 mm, distance = -45.78 um 17-03-17 23:38:54.678 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 23:38:54.678 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:38:54.678 -07 000000618 INF: FPGA: Recv YRDPOS 122697 17-03-17 23:38:54.688 -07 000000561 INF: FPGA: Xmit ZDACW 39074\n [Z Motor] 17-03-17 23:38:54.688 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall 17-03-17 23:38:54.688 -07 000000480 INF: Y Motor: Encoder = 122697 = motor step 95857.0 = 59.9106 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:38:54.688 -07 000000480 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.0000 mm (0.0 steps). UsingTableMove = False 17-03-17 23:38:54.688 -07 000000480 INF: Y Motor: Moving to 122701 encoder counts 17-03-17 23:38:54.688 -07 000000448 INF: FPGA: Recv ZDACW 17-03-17 23:38:54.698 -07 000000623 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 23:38:54.698 -07 000000561 INF: FPGA: 'ZDACW 39074' command took 0 ms to send, 0 ms to get response, and 22 ms overall 17-03-17 23:38:54.708 -07 000000480 INF: FPGA: Xmit YMVTO 122701\n [Y Motor] 17-03-17 23:38:54.718 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:38:54.718 -07 000000438 INF: FPGA: Recv ZDACR 39074 17-03-17 23:38:54.728 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-17 23:38:54.728 -07 000000561 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet)) 17-03-17 23:38:54.738 -07 000000547 INF: FPGA: Recv YMVTO 122700 9 17-03-17 23:38:54.738 -07 000000480 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 27 ms to get response, and 56 ms overall 17-03-17 23:38:54.738 -07 000000480 INF: Y Motor: Position error before settling = -1 encoder counts (0.000 mm) 17-03-17 23:38:54.738 -07 000000480 INF: Y Motor: To move from 59.911 to 59.913 (0.002 mm) should take 3 steps, but required 9 steps (0.006 mm). Slippage = 0.004 mm (1.91%). 17-03-17 23:38:54.738 -07 000000480 INF: Y Motor: FPGA move command 'YMVTO 122701' took 56 ms, distance = 0.002 mm, average velocity = 0.035 mm/sec 17-03-17 23:38:54.898 -07 000000486 INF: FPGA: Recv FOCMRRFOC 17-03-17 23:38:54.898 -07 000000623 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall 17-03-17 23:38:57.088 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:38:57.088 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:38:57.588 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:38:57.588 -07 000000547 INF: FPGA: Recv YRDPOS 122708 17-03-17 23:38:57.598 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:38:57.598 -07 000000480 INF: Y Motor: Encoder = 122708 = motor step 95865.6 = 59.9160 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:38:57.608 -07 000000480 INF: Y Motor: After move to 59.912609, error = 0.003407, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 23:38:57.608 -07 000000480 INF: Y Motor: Position error after settling = 7 encoder counts (0.003 mm), Delta during settling = 8 counts (0.004 mm) 17-03-17 23:38:57.608 -07 000000480 INF: Y Motor: Moved to 59.9160 after 2938 ms 17-03-17 23:38:57.608 -07 000000541 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178869 mm (DAC = 39074) 17-03-17 23:38:57.608 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:57.618 -07 000000547 INF: FPGA: Recv ZSGSRD 37138 17-03-17 23:38:57.618 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 3 ms overall 17-03-17 23:38:57.618 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:57.618 -07 000000512 INF: FPGA: Recv ZSGSRD 37139 17-03-17 23:38:57.628 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:38:57.628 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:57.628 -07 000000438 INF: FPGA: Recv ZSGSRD 37134 17-03-17 23:38:57.638 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:57.638 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:57.638 -07 000000486 INF: FPGA: Recv ZSGSRD 37131 17-03-17 23:38:57.648 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:57.648 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:57.648 -07 000000502 INF: FPGA: Recv ZSGSRD 37129 17-03-17 23:38:57.658 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:57.658 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:57.658 -07 000000433 INF: FPGA: Recv ZSGSRD 37135 17-03-17 23:38:57.668 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:57.668 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:57.668 -07 000000627 INF: FPGA: Recv ZSGSRD 37134 17-03-17 23:38:57.678 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:57.678 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:57.678 -07 000000482 INF: FPGA: Recv ZSGSRD 37135 17-03-17 23:38:57.688 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:57.688 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:57.688 -07 000000459 INF: FPGA: Recv ZSGSRD 37136 17-03-17 23:38:57.698 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:57.698 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:57.698 -07 000000623 INF: FPGA: Recv ZSGSRD 37131 17-03-17 23:38:57.708 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:57.708 -07 000000541 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:38:57.708 -07 000000576 INF: FPGA: Recv ZPIEZORD 33120 17-03-17 23:38:57.718 -07 000000541 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:57.718 -07 000000541 INF: Z Motor: Piezo is near 50.8 V (nominally 0 to 100 V), expect near 59.6 V, since DAC is at 5.962 V. Piezo Error = -8.9 V. 17-03-17 23:38:57.718 -07 000000541 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.9 um, Read 10 ADC samples: Avg = 37134 (-178.0 uncal um), Error = 0.9 uncal um, Median = 37134 (-178.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 37129 (-178.0 uncal um), Max = 37139 (-178.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-17 23:38:57.718 -07 000000541 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37134, posNoise = 5, negNoise = 5 17-03-17 23:38:57.718 -07 000000541 INF: Z Motor: After move to -0.178869, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:38:57.718 -07 000000541 INF: Z Motor: Settle wait time = 2941 ms, measure time = 103 ms (allowed 150 ms), total time = 3044 ms 17-03-17 23:38:57.718 -07 000000541 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms 17-03-17 23:38:57.768 -07 000000541 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 3096 ms 17-03-17 23:38:57.768 -07 000000541 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 23:38:57.768 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:38:57.768 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:38:57.768 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:38:57.768 -07 000000409 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:38:57.768 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 23:38:57.768 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:38:57.768 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:38:57.768 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 23:38:57.778 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-17 23:38:57.778 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 23:38:57.788 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms. 17-03-17 23:38:57.788 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms. 17-03-17 23:38:57.788 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:38:57.838 -07 000000623 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 23:38:58.138 -07 000000475 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-17 23:38:58.138 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-17 23:38:58.138 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 23:38:58.138 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 611836968, 0x0, 559484976) start. 17-03-17 23:38:58.178 -07 000000627 INF: FPGA: Recv @CAMSNAP 380 17-03-17 23:38:58.178 -07 000000502 INF: FPGA: Recv CAMSNAP 17-03-17 23:38:58.178 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall 17-03-17 23:38:58.268 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 611836968, 0x0, 559484976) end. Duration was 127 ms. 17-03-17 23:38:58.268 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:38:58.268 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-17 23:38:58.268 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms. 17-03-17 23:38:58.278 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:38:58.278 -07 000000448 INF: Image SNR check: start 17-03-17 23:38:58.278 -07 000000561 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:38:58.288 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 23:38:58.288 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 23:38:58.288 -07 000000448 INF: Image SNR check: pass [peak (Max-Min)=49.34] 17-03-17 23:38:58.288 -07 000000448 INF: Autofocus start 17-03-17 23:38:58.288 -07 000000448 INF: MeasureProfile start 17-03-17 23:38:58.308 -07 000000448 INF: MeasureProfile done 17-03-17 23:38:58.308 -07 000000448 INF: X=-96 Z correction [um]=-0.5732754 17-03-17 23:38:58.308 -07 000000448 INF: Autofocus finished 17-03-17 23:38:58.488 -07 000000482 INF: FPGA: Recv FOCMRRIMG 17-03-17 23:38:58.488 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 191 ms to get response, and 202 ms overall 17-03-17 23:38:58.488 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.916015625, Z-position -0.178880045683286. ---------- 17-03-17 23:38:58.488 -07 000000610 INF: Cycle 77 Tile 1 Exposure Settings A 1037 G 500 T 500 C 1037 17-03-17 23:38:58.488 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37462, sync = True, waitForSettling = True) 17-03-17 23:38:58.498 -07 000000610 INF: Z Motor: Moving to -0.171490 mm, started at -0.178880 mm, distance = 7.39 um 17-03-17 23:38:58.498 -07 000000610 INF: FPGA: Xmit ZDACW 37462\n [Z Motor] 17-03-17 23:38:58.498 -07 000000480 INF: FPGA: Recv ZDACW 17-03-17 23:38:58.508 -07 000000610 INF: FPGA: 'ZDACW 37462' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:58.508 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:38:58.508 -07 000000448 INF: FPGA: Recv ZDACR 37462 17-03-17 23:38:58.518 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:38:58.518 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:38:58.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:58.668 -07 000000482 INF: FPGA: Recv ZSGSRD 35984 17-03-17 23:38:58.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:38:58.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:58.678 -07 000000561 INF: FPGA: Recv ZSGSRD 35988 17-03-17 23:38:58.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:58.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:58.688 -07 000000576 INF: FPGA: Recv ZSGSRD 35988 17-03-17 23:38:58.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:58.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:58.698 -07 000000623 INF: FPGA: Recv ZSGSRD 35980 17-03-17 23:38:58.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:58.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:58.708 -07 000000486 INF: FPGA: Recv ZSGSRD 35989 17-03-17 23:38:58.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:58.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:58.718 -07 000000482 INF: FPGA: Recv ZSGSRD 35988 17-03-17 23:38:58.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:58.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:58.728 -07 000000541 INF: FPGA: Recv ZSGSRD 35984 17-03-17 23:38:58.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:58.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:58.738 -07 000000502 INF: FPGA: Recv ZSGSRD 35984 17-03-17 23:38:58.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:58.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:58.748 -07 000000438 INF: FPGA: Recv ZSGSRD 35980 17-03-17 23:38:58.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:58.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:38:58.758 -07 000000448 INF: FPGA: Recv ZSGSRD 35989 17-03-17 23:38:58.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:58.768 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:38:58.768 -07 000000618 INF: FPGA: Recv ZPIEZORD 31594 17-03-17 23:38:58.778 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:38:58.778 -07 000000610 INF: Z Motor: Piezo is near 47.5 V (nominally 0 to 100 V), expect near 57.2 V, since DAC is at 5.716 V. Piezo Error = -9.7 V. 17-03-17 23:38:58.778 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.5 um, Read 10 ADC samples: Avg = 35985 (-170.6 uncal um), Error = 0.9 uncal um, Median = 35986 (-170.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35980 (-170.6 uncal um), Max = 35989 (-170.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-17 23:38:58.778 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35985, posNoise = 4, negNoise = 5 17-03-17 23:38:58.778 -07 000000610 INF: Z Motor: After move to -0.171490, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:38:58.778 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms) 17-03-17 23:38:58.778 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:38:58.778 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:38:58.778 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:38:58.778 -07 000000409 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:38:58.778 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 23:38:58.778 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 23:38:58.778 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 23:38:58.778 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:38:58.778 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-17 23:38:58.778 -07 000000475 INF: Camera: sBCa_SetPowerMode(785074704, 1) start. 17-03-17 23:38:58.778 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms. 17-03-17 23:38:58.778 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 23:38:58.788 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms. 17-03-17 23:38:58.788 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 23:38:58.798 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms. 17-03-17 23:38:58.798 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms. 17-03-17 23:38:58.798 -07 000000475 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms. 17-03-17 23:38:58.798 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 23:38:58.808 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-17 23:38:58.808 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 23:38:58.818 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms. 17-03-17 23:38:58.818 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 42 ms. 17-03-17 23:38:58.818 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 37638 150\n [Camera] 17-03-17 23:38:59.018 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 23:38:59.898 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 4.012614, 17-03-17 23:39:00.058 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229 17-03-17 23:39:00.058 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229 17-03-17 23:39:00.058 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:39:00.168 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229 17-03-17 23:39:00.168 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229 17-03-17 23:39:00.168 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:39:00.168 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:39:00.168 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1129477224, 0x0, 391868352) start. 17-03-17 23:39:00.178 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:39:00.178 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start. 17-03-17 23:39:00.258 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37638 1422 17-03-17 23:39:00.398 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572 17-03-17 23:39:00.568 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1129477224, 0x0, 391868352) end. Duration was 395 ms. 17-03-17 23:39:00.568 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms. 17-03-17 23:39:00.568 -07 000000433 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:39:00.568 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:39:00.568 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 508 ms. 17-03-17 23:39:00.568 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 394 ms. 17-03-17 23:39:00.568 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms. 17-03-17 23:39:00.568 -07 000000459 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:39:00.578 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:39:00.578 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms. 17-03-17 23:39:00.908 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072 17-03-17 23:39:00.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072 17-03-17 23:39:00.908 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:39:00.908 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:39:00.908 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start. 17-03-17 23:39:00.908 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072 17-03-17 23:39:00.908 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072 17-03-17 23:39:00.908 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:39:00.908 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:39:00.908 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1164899488, 0x0, 418435064) start. 17-03-17 23:39:01.098 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 2265 17-03-17 23:39:01.098 -07 000000433 INF: FPGA: Recv CAMDBLSNAP 17-03-17 23:39:01.098 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 37638 150' command took 2 ms to send, 2262 ms to get response, and 2272 ms overall 17-03-17 23:39:01.098 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-17 23:39:01.098 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.916015625, Z-Position -0.171498625932403. ------ 17-03-17 23:39:01.208 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17830 mm 17-03-17 23:39:01.208 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 23:39:01.208 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:39:01.208 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True) 17-03-17 23:39:01.208 -07 000000438 INF: Y Motor: Moving to 60.7426 mm, started at 59.9160 mm, delta = 0.8266 mm 17-03-17 23:39:01.208 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 38949, sync = True, waitForSettling = False) 17-03-17 23:39:01.208 -07 000000627 INF: Z Motor: Moving to -0.178297 mm, started at -0.171499 mm, distance = -6.80 um 17-03-17 23:39:01.218 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:39:01.218 -07 000000486 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:39:01.218 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 7 ms overall 17-03-17 23:39:01.218 -07 000000512 INF: FPGA: Recv YRDPOS 122708 17-03-17 23:39:01.228 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:39:01.228 -07 000000438 INF: Y Motor: Encoder = 122708 = motor step 95865.6 = 59.9160 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:39:01.228 -07 000000438 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 23:39:01.228 -07 000000438 INF: Y Motor: Moving 1323 steps-1 17-03-17 23:39:01.228 -07 000000475 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 23:39:01.238 -07 000000627 INF: FPGA: Xmit ZDACW 38949\n [Z Motor] 17-03-17 23:39:01.238 -07 000000547 INF: FPGA: Recv ZDACW 17-03-17 23:39:01.248 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 23:39:01.248 -07 000000627 INF: FPGA: 'ZDACW 38949' command took 0 ms to send, 0 ms to get response, and 30 ms overall 17-03-17 23:39:01.258 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:39:01.258 -07 000000486 INF: FPGA: Recv ZDACR 38949 17-03-17 23:39:01.268 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-17 23:39:01.268 -07 000000627 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet)) 17-03-17 23:39:01.298 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1164899488, 0x0, 418435064) end. Duration was 394 ms. 17-03-17 23:39:01.298 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms. 17-03-17 23:39:01.298 -07 000000448 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:39:01.298 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 396 ms. 17-03-17 23:39:01.298 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms. 17-03-17 23:39:01.298 -07 000000541 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:39:01.308 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms. 17-03-17 23:39:01.308 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms. 17-03-17 23:39:01.308 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms. 17-03-17 23:39:01.318 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms. 17-03-17 23:39:01.428 -07 000000547 INF: FPGA: Recv FOCMRRFOC 17-03-17 23:39:01.428 -07 000000475 INF: FPGA: 'FOCMRRFOC' command took 7 ms to send, 199 ms to get response, and 215 ms overall 17-03-17 23:39:01.618 -07 000000576 INF: FPGA: Recv YMVTILE 17-03-17 23:39:01.618 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall 17-03-17 23:39:01.658 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:39:01.658 -07 000000433 INF: FPGA: Recv YRDPOS 124393 17-03-17 23:39:01.668 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:39:01.668 -07 000000438 INF: Y Motor: Encoder = 124393 = motor step 97182.0 = 60.7388 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:39:01.668 -07 000000438 INF: Y Motor: Position error before settling (table move) = -8 encoder counts (-0.004 mm) 17-03-17 23:39:01.668 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.827 mm, average velocity = 2.114 mm/sec 17-03-17 23:39:02.088 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:39:02.088 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:39:02.618 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:39:02.618 -07 000000547 INF: FPGA: Recv YRDPOS 124393 17-03-17 23:39:02.628 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:39:02.628 -07 000000438 INF: Y Motor: Encoder = 124393 = motor step 97182.0 = 60.7388 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:39:02.638 -07 000000438 INF: Y Motor: After move to 60.742607, error = -0.003838, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 23:39:02.638 -07 000000438 INF: Y Motor: Position error after settling (table move) = -8 encoder counts (-0.004 mm), Delta during settling = 0 counts (0.000 mm) 17-03-17 23:39:02.638 -07 000000438 INF: Y Motor: Moved to 60.7388 after 1422 ms (table move) 17-03-17 23:39:02.638 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.178297 mm (DAC = 38949) 17-03-17 23:39:02.638 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:02.638 -07 000000627 INF: FPGA: Recv ZSGSRD 37048 17-03-17 23:39:02.648 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-17 23:39:02.648 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:02.648 -07 000000502 INF: FPGA: Recv ZSGSRD 37043 17-03-17 23:39:02.658 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:02.658 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:02.658 -07 000000482 INF: FPGA: Recv ZSGSRD 37044 17-03-17 23:39:02.668 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:02.668 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:02.668 -07 000000438 INF: FPGA: Recv ZSGSRD 37055 17-03-17 23:39:02.678 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:02.678 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:02.678 -07 000000486 INF: FPGA: Recv ZSGSRD 37042 17-03-17 23:39:02.688 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:02.688 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:02.688 -07 000000541 INF: FPGA: Recv ZSGSRD 37046 17-03-17 23:39:02.698 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:02.698 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:02.698 -07 000000576 INF: FPGA: Recv ZSGSRD 37044 17-03-17 23:39:02.708 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:02.708 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:02.708 -07 000000438 INF: FPGA: Recv ZSGSRD 37042 17-03-17 23:39:02.718 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:02.718 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:02.718 -07 000000547 INF: FPGA: Recv ZSGSRD 37047 17-03-17 23:39:02.728 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:02.728 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:02.728 -07 000000459 INF: FPGA: Recv ZSGSRD 37045 17-03-17 23:39:02.738 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:02.738 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:39:02.738 -07 000000541 INF: FPGA: Recv ZPIEZORD 33016 17-03-17 23:39:02.748 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 1 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:02.748 -07 000000618 INF: Z Motor: Piezo is near 50.5 V (nominally 0 to 100 V), expect near 59.4 V, since DAC is at 5.943 V. Piezo Error = -8.9 V. 17-03-17 23:39:02.748 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.3 um, Read 10 ADC samples: Avg = 37046 (-177.4 uncal um), Error = 0.9 uncal um, Median = 37044 (-177.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 37042 (-177.4 uncal um), Max = 37055 (-177.5 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um) 17-03-17 23:39:02.748 -07 000000618 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37046, posNoise = 9, negNoise = 4 17-03-17 23:39:02.748 -07 000000618 INF: Z Motor: After move to -0.178297, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:39:02.748 -07 000000618 INF: Z Motor: Settle wait time = 1424 ms, measure time = 107 ms (allowed 150 ms), total time = 1531 ms 17-03-17 23:39:02.748 -07 000000618 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms 17-03-17 23:39:02.798 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1584 ms 17-03-17 23:39:02.798 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 23:39:02.798 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:39:02.798 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:39:02.798 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:39:02.798 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:39:02.798 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 23:39:02.798 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:39:02.798 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:39:02.798 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 23:39:02.808 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-17 23:39:02.808 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 23:39:02.818 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms. 17-03-17 23:39:02.818 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms. 17-03-17 23:39:02.818 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:39:02.868 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 42 17-03-17 23:39:03.168 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 342 17-03-17 23:39:03.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 342 17-03-17 23:39:03.168 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 23:39:03.168 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 611574712, 0x0, 559484976) start. 17-03-17 23:39:03.208 -07 000000541 INF: FPGA: Recv @CAMSNAP 380 17-03-17 23:39:03.208 -07 000000502 INF: FPGA: Recv CAMSNAP 17-03-17 23:39:03.208 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall 17-03-17 23:39:03.298 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 611574712, 0x0, 559484976) end. Duration was 125 ms. 17-03-17 23:39:03.298 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:39:03.298 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-17 23:39:03.298 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms. 17-03-17 23:39:03.308 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:39:03.308 -07 000000438 INF: Autofocus start 17-03-17 23:39:03.308 -07 000000438 INF: MeasureProfile start 17-03-17 23:39:03.308 -07 000000541 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:39:03.318 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 23:39:03.318 -07 000000627 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 23:39:03.318 -07 000000438 INF: MeasureProfile done 17-03-17 23:39:03.318 -07 000000438 INF: X=-160 Z correction [um]=-0.9121507 17-03-17 23:39:03.318 -07 000000438 INF: Autofocus finished 17-03-17 23:39:03.518 -07 000000541 INF: FPGA: Recv FOCMRRIMG 17-03-17 23:39:03.518 -07 000000627 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall 17-03-17 23:39:03.518 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73876953125, Z-position -0.178314715014811. ---------- 17-03-17 23:39:03.518 -07 000000610 INF: Cycle 77 Tile 2 Exposure Settings A 1037 G 500 T 500 C 1037 17-03-17 23:39:03.528 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37262, sync = True, waitForSettling = True) 17-03-17 23:39:03.528 -07 000000610 INF: Z Motor: Moving to -0.170575 mm, started at -0.178315 mm, distance = 7.74 um 17-03-17 23:39:03.528 -07 000000610 INF: FPGA: Xmit ZDACW 37262\n [Z Motor] 17-03-17 23:39:03.528 -07 000000459 INF: FPGA: Recv ZDACW 17-03-17 23:39:03.538 -07 000000610 INF: FPGA: 'ZDACW 37262' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:39:03.538 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:39:03.538 -07 000000448 INF: FPGA: Recv ZDACR 37262 17-03-17 23:39:03.548 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:03.548 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:39:03.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:03.698 -07 000000433 INF: FPGA: Recv ZSGSRD 35845 17-03-17 23:39:03.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:39:03.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:03.708 -07 000000547 INF: FPGA: Recv ZSGSRD 35844 17-03-17 23:39:03.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:03.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:03.718 -07 000000541 INF: FPGA: Recv ZSGSRD 35842 17-03-17 23:39:03.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:03.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:03.728 -07 000000482 INF: FPGA: Recv ZSGSRD 35842 17-03-17 23:39:03.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:03.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:03.738 -07 000000409 INF: FPGA: Recv ZSGSRD 35842 17-03-17 23:39:03.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:03.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:03.748 -07 000000627 INF: FPGA: Recv ZSGSRD 35840 17-03-17 23:39:03.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:03.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:03.758 -07 000000459 INF: FPGA: Recv ZSGSRD 35844 17-03-17 23:39:03.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:03.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:03.768 -07 000000576 INF: FPGA: Recv ZSGSRD 35847 17-03-17 23:39:03.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:03.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:03.778 -07 000000482 INF: FPGA: Recv ZSGSRD 35845 17-03-17 23:39:03.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:03.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:03.788 -07 000000433 INF: FPGA: Recv ZSGSRD 35839 17-03-17 23:39:03.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:03.798 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:39:03.798 -07 000000448 INF: FPGA: Recv ZPIEZORD 31397 17-03-17 23:39:03.808 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:03.808 -07 000000610 INF: Z Motor: Piezo is near 47.1 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.686 V. Piezo Error = -9.8 V. 17-03-17 23:39:03.808 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.6 um, Read 10 ADC samples: Avg = 35843 (-169.7 uncal um), Error = 0.9 uncal um, Median = 35843 (-169.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35839 (-169.7 uncal um), Max = 35847 (-169.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um) 17-03-17 23:39:03.808 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35843, posNoise = 4, negNoise = 4 17-03-17 23:39:03.808 -07 000000610 INF: Z Motor: After move to -0.170575, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:39:03.808 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms) 17-03-17 23:39:03.808 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:39:03.808 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:39:03.808 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:39:03.808 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:39:03.808 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 23:39:03.808 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 23:39:03.808 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 23:39:03.808 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:39:03.808 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:39:03.808 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 23:39:03.808 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-17 23:39:03.808 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 23:39:03.808 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-17 23:39:03.818 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 23:39:03.818 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms. 17-03-17 23:39:03.818 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 23:39:03.828 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms. 17-03-17 23:39:03.828 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms. 17-03-17 23:39:03.828 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms. 17-03-17 23:39:03.828 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms. 17-03-17 23:39:03.828 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 37439 150\n [Camera] 17-03-17 23:39:04.028 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 23:39:05.068 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229 17-03-17 23:39:05.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229 17-03-17 23:39:05.068 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:39:05.068 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229 17-03-17 23:39:05.078 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229 17-03-17 23:39:05.078 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:39:05.078 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:39:05.078 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start. 17-03-17 23:39:05.078 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:39:05.078 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start. 17-03-17 23:39:05.258 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 4.033041, 17-03-17 23:39:05.258 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37439 1422 17-03-17 23:39:05.408 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572 17-03-17 23:39:05.468 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 393 ms. 17-03-17 23:39:05.468 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms. 17-03-17 23:39:05.468 -07 000000459 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:39:05.468 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:39:05.468 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms. 17-03-17 23:39:05.478 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 394 ms. 17-03-17 23:39:05.478 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms. 17-03-17 23:39:05.478 -07 000000512 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:39:05.478 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:39:05.488 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms. 17-03-17 23:39:05.908 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072 17-03-17 23:39:05.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072 17-03-17 23:39:05.918 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:39:05.918 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:39:05.918 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) start. 17-03-17 23:39:05.918 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072 17-03-17 23:39:05.918 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072 17-03-17 23:39:05.918 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:39:05.918 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:39:05.918 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) start. 17-03-17 23:39:06.108 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 2265 17-03-17 23:39:06.108 -07 000000541 INF: FPGA: Recv CAMDBLSNAP 17-03-17 23:39:06.108 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 37439 150' command took 2 ms to send, 2261 ms to get response, and 2272 ms overall 17-03-17 23:39:06.108 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-17 23:39:06.108 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73876953125, Z-Position -0.170586387808273. ------ 17-03-17 23:39:06.108 -07 000000409 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:39:06.108 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17739 mm 17-03-17 23:39:06.108 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 23:39:06.118 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 38750, sync = True, waitForSettling = False) 17-03-17 23:39:06.118 -07 000000618 INF: Z Motor: Moving to -0.177386 mm, started at -0.170586 mm, distance = -6.80 um 17-03-17 23:39:06.118 -07 000000618 INF: FPGA: Xmit ZDACW 38750\n [Z Motor] 17-03-17 23:39:06.118 -07 000000433 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True) 17-03-17 23:39:06.118 -07 000000433 INF: Y Motor: Moving to 61.5726 mm, started at 60.7388 mm, delta = 0.8338 mm 17-03-17 23:39:06.118 -07 000000480 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:39:06.118 -07 000000409 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 3 ms to get response, and 6 ms overall 17-03-17 23:39:06.118 -07 000000623 INF: FPGA: Recv ZDACW 17-03-17 23:39:06.128 -07 000000618 INF: FPGA: 'ZDACW 38750' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:39:06.128 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:39:06.128 -07 000000459 INF: FPGA: Recv YRDPOS 124394 17-03-17 23:39:06.138 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall 17-03-17 23:39:06.138 -07 000000433 INF: Y Motor: Encoder = 124394 = motor step 97182.8 = 60.7393 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:39:06.138 -07 000000409 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 23:39:06.138 -07 000000433 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 23:39:06.138 -07 000000433 INF: Y Motor: Moving 1333 steps-8 17-03-17 23:39:06.148 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:39:06.148 -07 000000547 INF: FPGA: Recv ZDACR 38750 17-03-17 23:39:06.158 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 28 ms overall 17-03-17 23:39:06.158 -07 000000433 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 23:39:06.158 -07 000000618 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet)) 17-03-17 23:39:06.318 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) end. Duration was 401 ms. 17-03-17 23:39:06.318 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms. 17-03-17 23:39:06.318 -07 000000627 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:39:06.318 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1458343128, 0x0, 418435064) end. Duration was 401 ms. 17-03-17 23:39:06.318 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms. 17-03-17 23:39:06.318 -07 000000475 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:39:06.328 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:39:06.328 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms. 17-03-17 23:39:06.328 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms. 17-03-17 23:39:06.328 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms. 17-03-17 23:39:06.338 -07 000000618 INF: FPGA: Recv FOCMRRFOC 17-03-17 23:39:06.338 -07 000000409 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 218 ms overall 17-03-17 23:39:06.528 -07 000000459 INF: FPGA: Recv YMVTILE 17-03-17 23:39:06.538 -07 000000433 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 394 ms overall 17-03-17 23:39:06.568 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:39:06.568 -07 000000623 INF: FPGA: Recv YRDPOS 126095 17-03-17 23:39:06.578 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 23:39:06.578 -07 000000433 INF: Y Motor: Encoder = 126095 = motor step 98511.7 = 61.5698 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:39:06.578 -07 000000433 INF: Y Motor: Position error before settling (table move) = -6 encoder counts (-0.003 mm) 17-03-17 23:39:06.578 -07 000000433 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.834 mm, average velocity = 2.116 mm/sec 17-03-17 23:39:07.088 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:39:07.088 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:39:07.528 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:39:07.528 -07 000000475 INF: FPGA: Recv YRDPOS 126095 17-03-17 23:39:07.538 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:39:07.538 -07 000000433 INF: Y Motor: Encoder = 126095 = motor step 98511.7 = 61.5698 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:39:07.538 -07 000000433 INF: Y Motor: After move to 61.572609, error = -0.002785, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 23:39:07.538 -07 000000433 INF: Y Motor: Position error after settling (table move) = -6 encoder counts (-0.003 mm), Delta during settling = 0 counts (0.000 mm) 17-03-17 23:39:07.538 -07 000000433 INF: Y Motor: Moved to 61.5698 after 1427 ms (table move) 17-03-17 23:39:07.548 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177386 mm (DAC = 38750) 17-03-17 23:39:07.548 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:07.548 -07 000000512 INF: FPGA: Recv ZSGSRD 36900 17-03-17 23:39:07.558 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-17 23:39:07.558 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:07.558 -07 000000502 INF: FPGA: Recv ZSGSRD 36912 17-03-17 23:39:07.568 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:07.568 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:07.568 -07 000000433 INF: FPGA: Recv ZSGSRD 36913 17-03-17 23:39:07.578 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:07.578 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:07.578 -07 000000480 INF: FPGA: Recv ZSGSRD 36902 17-03-17 23:39:07.588 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:07.588 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:07.588 -07 000000433 INF: FPGA: Recv ZSGSRD 36906 17-03-17 23:39:07.598 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:07.598 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:07.598 -07 000000618 INF: FPGA: Recv ZSGSRD 36899 17-03-17 23:39:07.608 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:07.608 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:07.608 -07 000000502 INF: FPGA: Recv ZSGSRD 36896 17-03-17 23:39:07.618 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:07.618 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:07.618 -07 000000576 INF: FPGA: Recv ZSGSRD 36903 17-03-17 23:39:07.628 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:07.628 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:07.628 -07 000000512 INF: FPGA: Recv ZSGSRD 36908 17-03-17 23:39:07.638 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:07.638 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:07.638 -07 000000482 INF: FPGA: Recv ZSGSRD 36904 17-03-17 23:39:07.648 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:07.648 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:39:07.648 -07 000000475 INF: FPGA: Recv ZPIEZORD 32846 17-03-17 23:39:07.658 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:07.658 -07 000000561 INF: Z Motor: Piezo is near 50.2 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.913 V. Piezo Error = -9.0 V. 17-03-17 23:39:07.658 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.4 um, Read 10 ADC samples: Avg = 36904 (-176.5 uncal um), Error = 0.9 uncal um, Median = 36904 (-176.5 uncal um), StdDev = 6 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36896 (-176.5 uncal um), Max = 36913 (-176.6 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um) 17-03-17 23:39:07.658 -07 000000561 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36904, posNoise = 9, negNoise = 8 17-03-17 23:39:07.658 -07 000000561 INF: Z Motor: After move to -0.177386, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:39:07.658 -07 000000561 INF: Z Motor: Settle wait time = 1435 ms, measure time = 104 ms (allowed 150 ms), total time = 1539 ms 17-03-17 23:39:07.658 -07 000000561 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms 17-03-17 23:39:07.708 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms 17-03-17 23:39:07.708 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 23:39:07.708 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:39:07.708 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:39:07.708 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:39:07.708 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:39:07.708 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 23:39:07.708 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:39:07.708 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-17 23:39:07.708 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 23:39:07.718 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-17 23:39:07.718 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 23:39:07.718 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms. 17-03-17 23:39:07.718 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms. 17-03-17 23:39:07.728 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:39:07.768 -07 000000482 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 23:39:08.068 -07 000000448 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-17 23:39:08.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-17 23:39:08.068 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 23:39:08.078 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1148719264, 0x0, 559484976) start. 17-03-17 23:39:08.108 -07 000000541 INF: FPGA: Recv @CAMSNAP 380 17-03-17 23:39:08.108 -07 000000561 INF: FPGA: Recv CAMSNAP 17-03-17 23:39:08.108 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 385 ms overall 17-03-17 23:39:08.198 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1148719264, 0x0, 559484976) end. Duration was 125 ms. 17-03-17 23:39:08.198 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:39:08.208 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-17 23:39:08.208 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 132 ms. 17-03-17 23:39:08.308 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:39:08.308 -07 000000627 INF: Autofocus start 17-03-17 23:39:08.308 -07 000000627 INF: MeasureProfile start 17-03-17 23:39:08.308 -07 000000623 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:39:08.318 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-17 23:39:08.318 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 23:39:08.318 -07 000000627 INF: MeasureProfile done 17-03-17 23:39:08.318 -07 000000627 INF: X=48 Z correction [um]=0.1739867 17-03-17 23:39:08.318 -07 000000627 INF: Autofocus finished 17-03-17 23:39:08.518 -07 000000448 INF: FPGA: Recv FOCMRRIMG 17-03-17 23:39:08.518 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall 17-03-17 23:39:08.518 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56982421875, Z-position -0.177402476890681. ---------- 17-03-17 23:39:08.528 -07 000000610 INF: Cycle 77 Tile 3 Exposure Settings A 1037 G 500 T 500 C 1037 17-03-17 23:39:08.528 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37300, sync = True, waitForSettling = True) 17-03-17 23:39:08.528 -07 000000610 INF: Z Motor: Moving to -0.170748 mm, started at -0.177402 mm, distance = 6.65 um 17-03-17 23:39:08.528 -07 000000610 INF: FPGA: Xmit ZDACW 37300\n [Z Motor] 17-03-17 23:39:08.528 -07 000000475 INF: FPGA: Recv ZDACW 17-03-17 23:39:08.538 -07 000000610 INF: FPGA: 'ZDACW 37300' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:39:08.538 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:39:08.538 -07 000000480 INF: FPGA: Recv ZDACR 37300 17-03-17 23:39:08.548 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:08.548 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:39:08.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:08.698 -07 000000561 INF: FPGA: Recv ZSGSRD 35871 17-03-17 23:39:08.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:39:08.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:08.708 -07 000000438 INF: FPGA: Recv ZSGSRD 35865 17-03-17 23:39:08.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:08.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:08.718 -07 000000541 INF: FPGA: Recv ZSGSRD 35867 17-03-17 23:39:08.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:08.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:08.728 -07 000000475 INF: FPGA: Recv ZSGSRD 35870 17-03-17 23:39:08.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:08.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:08.738 -07 000000618 INF: FPGA: Recv ZSGSRD 35875 17-03-17 23:39:08.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:08.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:08.748 -07 000000480 INF: FPGA: Recv ZSGSRD 35871 17-03-17 23:39:08.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:08.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:08.758 -07 000000409 INF: FPGA: Recv ZSGSRD 35873 17-03-17 23:39:08.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:08.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:08.768 -07 000000541 INF: FPGA: Recv ZSGSRD 35873 17-03-17 23:39:08.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:08.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:08.778 -07 000000482 INF: FPGA: Recv ZSGSRD 35868 17-03-17 23:39:08.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:08.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:08.788 -07 000000618 INF: FPGA: Recv ZSGSRD 35864 17-03-17 23:39:08.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:08.798 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:39:08.798 -07 000000480 INF: FPGA: Recv ZPIEZORD 31451 17-03-17 23:39:08.808 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:08.808 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.692 V. Piezo Error = -9.7 V. 17-03-17 23:39:08.808 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.7 um, Read 10 ADC samples: Avg = 35870 (-169.9 uncal um), Error = 0.9 uncal um, Median = 35870 (-169.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35864 (-169.8 uncal um), Max = 35875 (-169.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um) 17-03-17 23:39:08.808 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35870, posNoise = 5, negNoise = 6 17-03-17 23:39:08.808 -07 000000610 INF: Z Motor: After move to -0.170748, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:39:08.808 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms) 17-03-17 23:39:08.808 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:39:08.808 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:39:08.808 -07 000000409 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:39:08.808 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:39:08.808 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 23:39:08.808 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:39:08.808 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 23:39:08.808 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 23:39:08.808 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:39:08.808 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 23:39:08.808 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-17 23:39:08.808 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 23:39:08.818 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-17 23:39:08.818 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 23:39:08.818 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-17 23:39:08.818 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 23:39:08.828 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms. 17-03-17 23:39:08.828 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms. 17-03-17 23:39:08.828 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms. 17-03-17 23:39:08.828 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms. 17-03-17 23:39:08.828 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 37477 150\n [Camera] 17-03-17 23:39:09.028 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 23:39:10.068 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1231 17-03-17 23:39:10.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1231 17-03-17 23:39:10.068 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:39:10.068 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:39:10.068 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start. 17-03-17 23:39:10.068 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1231 17-03-17 23:39:10.068 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1231 17-03-17 23:39:10.078 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:39:10.078 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:39:10.078 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start. 17-03-17 23:39:10.258 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37477 1422 17-03-17 23:39:10.408 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572 17-03-17 23:39:10.458 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 387 ms. 17-03-17 23:39:10.458 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms. 17-03-17 23:39:10.458 -07 000000475 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:39:10.468 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:39:10.468 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 393 ms. 17-03-17 23:39:10.468 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms. 17-03-17 23:39:10.468 -07 000000541 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:39:10.468 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:39:10.468 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 397 ms. 17-03-17 23:39:10.468 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 398 ms. 17-03-17 23:39:10.618 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 3.981281, 17-03-17 23:39:10.908 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072 17-03-17 23:39:10.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072 17-03-17 23:39:10.908 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:39:10.908 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:39:10.908 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start. 17-03-17 23:39:10.918 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072 17-03-17 23:39:10.918 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072 17-03-17 23:39:10.918 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:39:10.918 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:39:10.918 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start. 17-03-17 23:39:11.098 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 2265 17-03-17 23:39:11.108 -07 000000459 INF: FPGA: Recv CAMDBLSNAP 17-03-17 23:39:11.108 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 37477 150' command took 2 ms to send, 2260 ms to get response, and 2272 ms overall 17-03-17 23:39:11.108 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-17 23:39:11.108 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56982421875, Z-Position -0.1707598415361. ------ 17-03-17 23:39:11.108 -07 000000623 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17756 mm 17-03-17 23:39:11.108 -07 000000623 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 23:39:11.108 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:39:11.118 -07 000000475 INF: Z Motor: Entering MoveAbsStepped (DAC = 38788, sync = True, waitForSettling = False) 17-03-17 23:39:11.118 -07 000000475 INF: Z Motor: Moving to -0.177560 mm, started at -0.170760 mm, distance = -6.80 um 17-03-17 23:39:11.118 -07 000000475 INF: FPGA: Xmit ZDACW 38788\n [Z Motor] 17-03-17 23:39:11.118 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True) 17-03-17 23:39:11.118 -07 000000480 INF: Y Motor: Moving to 62.4026 mm, started at 61.5698 mm, delta = 0.8328 mm 17-03-17 23:39:11.118 -07 000000433 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:39:11.118 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 5 ms to get response, and 6 ms overall 17-03-17 23:39:11.118 -07 000000438 INF: FPGA: Recv ZDACW 17-03-17 23:39:11.128 -07 000000475 INF: FPGA: 'ZDACW 38788' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:39:11.128 -07 000000475 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:39:11.128 -07 000000502 INF: FPGA: Recv ZDACR 38788 17-03-17 23:39:11.138 -07 000000475 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:11.138 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:39:11.138 -07 000000475 INF: Z Motor: MoveAbsStepped took 18 ms (did NOT wait for settling yet)) 17-03-17 23:39:11.138 -07 000000502 INF: FPGA: Recv YRDPOS 126096 17-03-17 23:39:11.148 -07 000000482 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 23:39:11.148 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall 17-03-17 23:39:11.148 -07 000000480 INF: Y Motor: Encoder = 126096 = motor step 98512.5 = 61.5703 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:39:11.148 -07 000000480 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 23:39:11.148 -07 000000480 INF: Y Motor: Moving 1332 steps-6 17-03-17 23:39:11.158 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 23:39:11.318 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 399 ms. 17-03-17 23:39:11.318 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 402 ms. 17-03-17 23:39:11.318 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms. 17-03-17 23:39:11.318 -07 000000618 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:39:11.318 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms. 17-03-17 23:39:11.318 -07 000000448 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:39:11.318 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:39:11.318 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms. 17-03-17 23:39:11.318 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms. 17-03-17 23:39:11.328 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms. 17-03-17 23:39:11.348 -07 000000459 INF: FPGA: Recv FOCMRRFOC 17-03-17 23:39:11.348 -07 000000482 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 227 ms overall 17-03-17 23:39:11.528 -07 000000512 INF: FPGA: Recv YMVTILE 17-03-17 23:39:11.528 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall 17-03-17 23:39:11.568 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:39:11.568 -07 000000459 INF: FPGA: Recv YRDPOS 127797 17-03-17 23:39:11.578 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:11.578 -07 000000480 INF: Y Motor: Encoder = 127797 = motor step 99841.4 = 62.4009 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:39:11.578 -07 000000480 INF: Y Motor: Position error before settling (table move) = -4 encoder counts (-0.002 mm) 17-03-17 23:39:11.578 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.833 mm, average velocity = 2.169 mm/sec 17-03-17 23:39:12.088 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:39:12.088 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:39:12.528 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:39:12.528 -07 000000561 INF: FPGA: Recv YRDPOS 127797 17-03-17 23:39:12.538 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:12.538 -07 000000480 INF: Y Motor: Encoder = 127797 = motor step 99841.4 = 62.4009 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:39:12.538 -07 000000480 INF: Y Motor: After move to 62.402607, error = -0.001728, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 23:39:12.538 -07 000000480 INF: Y Motor: Position error after settling (table move) = -4 encoder counts (-0.002 mm), Delta during settling = 0 counts (0.000 mm) 17-03-17 23:39:12.538 -07 000000480 INF: Y Motor: Moved to 62.4009 after 1425 ms (table move) 17-03-17 23:39:12.548 -07 000000623 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177560 mm (DAC = 38788) 17-03-17 23:39:12.548 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:12.548 -07 000000475 INF: FPGA: Recv ZSGSRD 36928 17-03-17 23:39:12.558 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:12.558 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:12.558 -07 000000448 INF: FPGA: Recv ZSGSRD 36934 17-03-17 23:39:12.568 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:12.568 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:12.568 -07 000000502 INF: FPGA: Recv ZSGSRD 36925 17-03-17 23:39:12.578 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:12.578 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:12.578 -07 000000486 INF: FPGA: Recv ZSGSRD 36933 17-03-17 23:39:12.588 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:12.588 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:12.588 -07 000000547 INF: FPGA: Recv ZSGSRD 36927 17-03-17 23:39:12.598 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:12.598 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:12.598 -07 000000618 INF: FPGA: Recv ZSGSRD 36929 17-03-17 23:39:12.608 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:12.608 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:12.608 -07 000000576 INF: FPGA: Recv ZSGSRD 36934 17-03-17 23:39:12.618 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:12.618 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:12.618 -07 000000433 INF: FPGA: Recv ZSGSRD 36933 17-03-17 23:39:12.628 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:12.628 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:12.628 -07 000000541 INF: FPGA: Recv ZSGSRD 36930 17-03-17 23:39:12.638 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:12.638 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:12.638 -07 000000547 INF: FPGA: Recv ZSGSRD 36928 17-03-17 23:39:12.648 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:12.648 -07 000000623 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:39:12.648 -07 000000475 INF: FPGA: Recv ZPIEZORD 32883 17-03-17 23:39:12.658 -07 000000623 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:12.658 -07 000000623 INF: Z Motor: Piezo is near 50.2 V (nominally 0 to 100 V), expect near 59.2 V, since DAC is at 5.919 V. Piezo Error = -8.9 V. 17-03-17 23:39:12.658 -07 000000623 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.6 um, Read 10 ADC samples: Avg = 36930 (-176.7 uncal um), Error = 0.9 uncal um, Median = 36930 (-176.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36925 (-176.6 uncal um), Max = 36934 (-176.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-17 23:39:12.658 -07 000000623 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36930, posNoise = 4, negNoise = 5 17-03-17 23:39:12.658 -07 000000623 INF: Z Motor: After move to -0.177560, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:39:12.658 -07 000000623 INF: Z Motor: Settle wait time = 1429 ms, measure time = 110 ms (allowed 150 ms), total time = 1539 ms 17-03-17 23:39:12.658 -07 000000623 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms 17-03-17 23:39:12.698 -07 000000623 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1581 ms 17-03-17 23:39:12.698 -07 000000623 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 23:39:12.698 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:39:12.698 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:39:12.698 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:39:12.698 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:39:12.698 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 23:39:12.698 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:39:12.698 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:39:12.698 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 23:39:12.708 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-17 23:39:12.708 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 23:39:12.718 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms. 17-03-17 23:39:12.718 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms. 17-03-17 23:39:12.718 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:39:12.758 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 23:39:13.058 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-17 23:39:13.058 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-17 23:39:13.058 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 23:39:13.058 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1510640456, 0x0, 559484976) start. 17-03-17 23:39:13.098 -07 000000409 INF: FPGA: Recv @CAMSNAP 380 17-03-17 23:39:13.098 -07 000000433 INF: FPGA: Recv CAMSNAP 17-03-17 23:39:13.098 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 385 ms overall 17-03-17 23:39:13.188 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1510640456, 0x0, 559484976) end. Duration was 127 ms. 17-03-17 23:39:13.188 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:39:13.188 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms. 17-03-17 23:39:13.188 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms. 17-03-17 23:39:13.298 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:39:13.298 -07 000000627 INF: Autofocus start 17-03-17 23:39:13.298 -07 000000627 INF: MeasureProfile start 17-03-17 23:39:13.298 -07 000000482 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:39:13.308 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 23:39:13.308 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 23:39:13.308 -07 000000627 INF: MeasureProfile done 17-03-17 23:39:13.308 -07 000000627 INF: X=-64 Z correction [um]=-0.4038377 17-03-17 23:39:13.308 -07 000000627 INF: Autofocus finished 17-03-17 23:39:13.508 -07 000000482 INF: FPGA: Recv FOCMRRIMG 17-03-17 23:39:13.508 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 23:39:13.508 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.40087890625, Z-position -0.177569506406367. ---------- 17-03-17 23:39:13.508 -07 000000610 INF: Cycle 77 Tile 4 Exposure Settings A 1037 G 500 T 500 C 1037 17-03-17 23:39:13.518 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37212, sync = True, waitForSettling = True) 17-03-17 23:39:13.518 -07 000000610 INF: Z Motor: Moving to -0.170346 mm, started at -0.177570 mm, distance = 7.22 um 17-03-17 23:39:13.518 -07 000000610 INF: FPGA: Xmit ZDACW 37212\n [Z Motor] 17-03-17 23:39:13.518 -07 000000618 INF: FPGA: Recv ZDACW 17-03-17 23:39:13.528 -07 000000610 INF: FPGA: 'ZDACW 37212' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:13.528 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:39:13.528 -07 000000512 INF: FPGA: Recv ZDACR 37212 17-03-17 23:39:13.538 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:13.538 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:39:13.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:13.688 -07 000000480 INF: FPGA: Recv ZSGSRD 35804 17-03-17 23:39:13.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:39:13.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:13.698 -07 000000438 INF: FPGA: Recv ZSGSRD 35810 17-03-17 23:39:13.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:13.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:13.708 -07 000000486 INF: FPGA: Recv ZSGSRD 35810 17-03-17 23:39:13.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:13.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:13.718 -07 000000618 INF: FPGA: Recv ZSGSRD 35799 17-03-17 23:39:13.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:13.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:13.728 -07 000000512 INF: FPGA: Recv ZSGSRD 35804 17-03-17 23:39:13.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:13.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:13.738 -07 000000623 INF: FPGA: Recv ZSGSRD 35813 17-03-17 23:39:13.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:13.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:13.748 -07 000000502 INF: FPGA: Recv ZSGSRD 35810 17-03-17 23:39:13.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:13.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:13.758 -07 000000627 INF: FPGA: Recv ZSGSRD 35802 17-03-17 23:39:13.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:13.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:13.768 -07 000000541 INF: FPGA: Recv ZSGSRD 35808 17-03-17 23:39:13.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:13.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:13.778 -07 000000547 INF: FPGA: Recv ZSGSRD 35814 17-03-17 23:39:13.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:13.788 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:39:13.788 -07 000000448 INF: FPGA: Recv ZPIEZORD 31368 17-03-17 23:39:13.798 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:13.798 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.8 V, since DAC is at 5.678 V. Piezo Error = -9.8 V. 17-03-17 23:39:13.798 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.3 um, Read 10 ADC samples: Avg = 35807 (-169.5 uncal um), Error = 0.9 uncal um, Median = 35809 (-169.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35799 (-169.4 uncal um), Max = 35814 (-169.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um) 17-03-17 23:39:13.798 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35807, posNoise = 7, negNoise = 8 17-03-17 23:39:13.798 -07 000000610 INF: Z Motor: After move to -0.170346, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:39:13.798 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms) 17-03-17 23:39:13.798 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:39:13.798 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:39:13.798 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:39:13.798 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:39:13.798 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 23:39:13.798 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 23:39:13.798 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 23:39:13.798 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:39:13.798 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-17 23:39:13.798 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 23:39:13.798 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:39:13.798 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 23:39:13.808 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-17 23:39:13.808 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 23:39:13.808 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-17 23:39:13.808 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 23:39:13.818 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms. 17-03-17 23:39:13.818 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms. 17-03-17 23:39:13.818 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms. 17-03-17 23:39:13.818 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms. 17-03-17 23:39:13.828 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 37389 150\n [Camera] 17-03-17 23:39:14.028 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 23:39:15.058 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229 17-03-17 23:39:15.058 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229 17-03-17 23:39:15.058 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:39:15.058 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:39:15.058 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start. 17-03-17 23:39:15.068 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229 17-03-17 23:39:15.068 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229 17-03-17 23:39:15.068 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:39:15.068 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:39:15.068 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start. 17-03-17 23:39:15.258 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37389 1422 17-03-17 23:39:15.408 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572 17-03-17 23:39:15.458 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 399 ms. 17-03-17 23:39:15.468 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms. 17-03-17 23:39:15.468 -07 000000459 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:39:15.468 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 400 ms. 17-03-17 23:39:15.468 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms. 17-03-17 23:39:15.468 -07 000000627 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:39:15.468 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:39:15.468 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms. 17-03-17 23:39:15.468 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:39:15.478 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms. 17-03-17 23:39:15.908 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072 17-03-17 23:39:15.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072 17-03-17 23:39:15.908 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:39:15.908 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:39:15.908 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start. 17-03-17 23:39:15.908 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072 17-03-17 23:39:15.908 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072 17-03-17 23:39:15.908 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:39:15.908 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:39:15.908 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start. 17-03-17 23:39:15.978 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 4.015368, 17-03-17 23:39:16.098 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 2265 17-03-17 23:39:16.098 -07 000000438 INF: FPGA: Recv CAMDBLSNAP 17-03-17 23:39:16.098 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 37389 150' command took 2 ms to send, 2263 ms to get response, and 2272 ms overall 17-03-17 23:39:16.098 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-17 23:39:16.098 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.40087890625, Z-Position -0.17035511617117. ------ 17-03-17 23:39:16.098 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:39:16.098 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17716 mm 17-03-17 23:39:16.098 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 23:39:16.108 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True) 17-03-17 23:39:16.108 -07 000000480 INF: Y Motor: Moving to 63.2326 mm, started at 62.4009 mm, delta = 0.8317 mm 17-03-17 23:39:16.108 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:39:16.108 -07 000000547 INF: Z Motor: Entering MoveAbsStepped (DAC = 38700, sync = True, waitForSettling = False) 17-03-17 23:39:16.108 -07 000000547 INF: Z Motor: Moving to -0.177157 mm, started at -0.170355 mm, distance = -6.80 um 17-03-17 23:39:16.108 -07 000000627 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:39:16.108 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall 17-03-17 23:39:16.108 -07 000000475 INF: FPGA: Recv YRDPOS 127798 17-03-17 23:39:16.118 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:16.118 -07 000000480 INF: Y Motor: Encoder = 127798 = motor step 99842.2 = 62.4014 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:39:16.118 -07 000000547 INF: FPGA: Xmit ZDACW 38700\n [Z Motor] 17-03-17 23:39:16.118 -07 000000480 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 23:39:16.118 -07 000000480 INF: Y Motor: Moving 1330 steps-4 17-03-17 23:39:16.118 -07 000000561 INF: FPGA: Recv ZDACW 17-03-17 23:39:16.128 -07 000000547 INF: FPGA: 'ZDACW 38700' command took 0 ms to send, 0 ms to get response, and 18 ms overall 17-03-17 23:39:16.128 -07 000000459 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 23:39:16.138 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 23:39:16.148 -07 000000547 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:39:16.148 -07 000000438 INF: FPGA: Recv ZDACR 38700 17-03-17 23:39:16.158 -07 000000547 INF: FPGA: 'ZDACR' command took 2 ms to send, 0 ms to get response, and 29 ms overall 17-03-17 23:39:16.158 -07 000000547 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet)) 17-03-17 23:39:16.308 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 398 ms. 17-03-17 23:39:16.308 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms. 17-03-17 23:39:16.308 -07 000000433 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:39:16.308 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 400 ms. 17-03-17 23:39:16.308 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms. 17-03-17 23:39:16.308 -07 000000541 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:39:16.308 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:39:16.308 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms. 17-03-17 23:39:16.308 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms. 17-03-17 23:39:16.318 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms. 17-03-17 23:39:16.328 -07 000000576 INF: FPGA: Recv FOCMRRFOC 17-03-17 23:39:16.328 -07 000000459 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 220 ms overall 17-03-17 23:39:16.508 -07 000000561 INF: FPGA: Recv YMVTILE 17-03-17 23:39:16.508 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 367 ms to get response, and 394 ms overall 17-03-17 23:39:16.548 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:39:16.548 -07 000000547 INF: FPGA: Recv YRDPOS 129495 17-03-17 23:39:16.558 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:39:16.558 -07 000000480 INF: Y Motor: Encoder = 129495 = motor step 101168.0 = 63.2300 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:39:16.558 -07 000000480 INF: Y Motor: Position error before settling (table move) = -5 encoder counts (-0.002 mm) 17-03-17 23:39:16.558 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.832 mm, average velocity = 2.111 mm/sec 17-03-17 23:39:17.088 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:39:17.088 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:39:17.508 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:39:17.508 -07 000000459 INF: FPGA: Recv YRDPOS 129495 17-03-17 23:39:17.518 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:17.518 -07 000000480 INF: Y Motor: Encoder = 129495 = motor step 101168.0 = 63.2300 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:39:17.518 -07 000000480 INF: Y Motor: After move to 63.232609, error = -0.002628, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 23:39:17.518 -07 000000480 INF: Y Motor: Position error after settling (table move) = -5 encoder counts (-0.002 mm), Delta during settling = 0 counts (0.000 mm) 17-03-17 23:39:17.518 -07 000000480 INF: Y Motor: Moved to 63.2300 after 1413 ms (table move) 17-03-17 23:39:17.518 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177157 mm (DAC = 38700) 17-03-17 23:39:17.518 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:17.528 -07 000000541 INF: FPGA: Recv ZSGSRD 36864 17-03-17 23:39:17.528 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall 17-03-17 23:39:17.528 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:17.528 -07 000000561 INF: FPGA: Recv ZSGSRD 36866 17-03-17 23:39:17.538 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:17.538 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:17.538 -07 000000409 INF: FPGA: Recv ZSGSRD 36877 17-03-17 23:39:17.548 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:17.548 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:17.548 -07 000000482 INF: FPGA: Recv ZSGSRD 36868 17-03-17 23:39:17.558 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:17.558 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:17.558 -07 000000480 INF: FPGA: Recv ZSGSRD 36869 17-03-17 23:39:17.568 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:17.568 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:17.568 -07 000000475 INF: FPGA: Recv ZSGSRD 36866 17-03-17 23:39:17.578 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:17.578 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:17.578 -07 000000438 INF: FPGA: Recv ZSGSRD 36870 17-03-17 23:39:17.588 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:17.588 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:17.588 -07 000000547 INF: FPGA: Recv ZSGSRD 36868 17-03-17 23:39:17.598 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:17.598 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:17.598 -07 000000627 INF: FPGA: Recv ZSGSRD 36855 17-03-17 23:39:17.608 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:17.608 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:17.608 -07 000000512 INF: FPGA: Recv ZSGSRD 36875 17-03-17 23:39:17.618 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:17.618 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:39:17.618 -07 000000433 INF: FPGA: Recv ZPIEZORD 32807 17-03-17 23:39:17.628 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:39:17.628 -07 000000618 INF: Z Motor: Piezo is near 50.1 V (nominally 0 to 100 V), expect near 59.1 V, since DAC is at 5.905 V. Piezo Error = -9.0 V. 17-03-17 23:39:17.628 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.2 um, Read 10 ADC samples: Avg = 36868 (-176.3 uncal um), Error = 0.9 uncal um, Median = 36868 (-176.3 uncal um), StdDev = 6 (0.0 uncal um), Range = 22 (0.1 uncal um), Min = 36855 (-176.2 uncal um), Max = 36877 (-176.3 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 13 (0.1 uncal um) 17-03-17 23:39:17.628 -07 000000618 INF: Z Motor: ADC noise = 13, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36868, posNoise = 9, negNoise = 13 17-03-17 23:39:17.628 -07 000000618 INF: Z Motor: After move to -0.177157, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:39:17.628 -07 000000618 INF: Z Motor: Settle wait time = 1416 ms, measure time = 103 ms (allowed 150 ms), total time = 1519 ms 17-03-17 23:39:17.628 -07 000000618 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms 17-03-17 23:39:17.678 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1571 ms 17-03-17 23:39:17.678 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 23:39:17.678 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:39:17.678 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:39:17.678 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:39:17.678 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 23:39:17.678 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:39:17.678 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:39:17.688 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:39:17.688 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 23:39:17.688 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-17 23:39:17.688 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 23:39:17.688 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms. 17-03-17 23:39:17.688 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms. 17-03-17 23:39:17.698 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:39:17.738 -07 000000475 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 23:39:18.038 -07 000000448 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-17 23:39:18.038 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-17 23:39:18.038 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 23:39:18.038 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) start. 17-03-17 23:39:18.078 -07 000000475 INF: FPGA: Recv @CAMSNAP 380 17-03-17 23:39:18.078 -07 000000561 INF: FPGA: Recv CAMSNAP 17-03-17 23:39:18.078 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 385 ms overall 17-03-17 23:39:18.168 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2387972312, 0x0, 559484976) end. Duration was 128 ms. 17-03-17 23:39:18.168 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:39:18.168 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms. 17-03-17 23:39:18.168 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms. 17-03-17 23:39:18.278 -07 000000409 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:39:18.278 -07 000000438 INF: Autofocus start 17-03-17 23:39:18.278 -07 000000438 INF: MeasureProfile start 17-03-17 23:39:18.278 -07 000000433 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:39:18.288 -07 000000409 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 23:39:18.288 -07 000000409 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 23:39:18.288 -07 000000438 INF: MeasureProfile done 17-03-17 23:39:18.288 -07 000000438 INF: X=-32 Z correction [um]=-0.2344 17-03-17 23:39:18.288 -07 000000438 INF: Autofocus finished 17-03-17 23:39:18.488 -07 000000433 INF: FPGA: Recv FOCMRRIMG 17-03-17 23:39:18.488 -07 000000409 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 23:39:18.488 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22998046875, Z-position -0.177171205253578. ---------- 17-03-17 23:39:18.488 -07 000000610 INF: Cycle 77 Tile 5 Exposure Settings A 1037 G 500 T 500 C 1037 17-03-17 23:39:18.488 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37161, sync = True, waitForSettling = True) 17-03-17 23:39:18.498 -07 000000610 INF: Z Motor: Moving to -0.170112 mm, started at -0.177171 mm, distance = 7.06 um 17-03-17 23:39:18.498 -07 000000610 INF: FPGA: Xmit ZDACW 37161\n [Z Motor] 17-03-17 23:39:18.498 -07 000000486 INF: FPGA: Recv ZDACW 17-03-17 23:39:18.508 -07 000000610 INF: FPGA: 'ZDACW 37161' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:39:18.508 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:39:18.508 -07 000000480 INF: FPGA: Recv ZDACR 37161 17-03-17 23:39:18.518 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:18.518 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:39:18.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:18.668 -07 000000409 INF: FPGA: Recv ZSGSRD 35769 17-03-17 23:39:18.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:18.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:18.678 -07 000000475 INF: FPGA: Recv ZSGSRD 35772 17-03-17 23:39:18.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:18.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:18.688 -07 000000433 INF: FPGA: Recv ZSGSRD 35770 17-03-17 23:39:18.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:18.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:18.698 -07 000000623 INF: FPGA: Recv ZSGSRD 35770 17-03-17 23:39:18.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:18.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:18.708 -07 000000480 INF: FPGA: Recv ZSGSRD 35771 17-03-17 23:39:18.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:18.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:18.718 -07 000000459 INF: FPGA: Recv ZSGSRD 35772 17-03-17 23:39:18.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:18.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:18.728 -07 000000547 INF: FPGA: Recv ZSGSRD 35775 17-03-17 23:39:18.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:18.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:18.738 -07 000000541 INF: FPGA: Recv ZSGSRD 35770 17-03-17 23:39:18.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:18.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:18.748 -07 000000482 INF: FPGA: Recv ZSGSRD 35764 17-03-17 23:39:18.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:18.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:18.758 -07 000000561 INF: FPGA: Recv ZSGSRD 35775 17-03-17 23:39:18.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:18.768 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:39:18.768 -07 000000502 INF: FPGA: Recv ZPIEZORD 31295 17-03-17 23:39:18.778 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:18.778 -07 000000610 INF: Z Motor: Piezo is near 46.9 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.670 V. Piezo Error = -9.8 V. 17-03-17 23:39:18.778 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.1 um, Read 10 ADC samples: Avg = 35771 (-169.2 uncal um), Error = 0.9 uncal um, Median = 35770 (-169.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35764 (-169.2 uncal um), Max = 35775 (-169.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um) 17-03-17 23:39:18.778 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35771, posNoise = 4, negNoise = 7 17-03-17 23:39:18.778 -07 000000610 INF: Z Motor: After move to -0.170112, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:39:18.778 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms) 17-03-17 23:39:18.778 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:39:18.778 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:39:18.778 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:39:18.778 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:39:18.778 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 23:39:18.778 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:39:18.778 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 23:39:18.778 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 23:39:18.778 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:39:18.778 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 23:39:18.778 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-17 23:39:18.778 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 23:39:18.788 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-17 23:39:18.788 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 23:39:18.788 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms. 17-03-17 23:39:18.788 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 23:39:18.798 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms. 17-03-17 23:39:18.798 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms. 17-03-17 23:39:18.798 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms. 17-03-17 23:39:18.798 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms. 17-03-17 23:39:18.798 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 37338 150\n [Camera] 17-03-17 23:39:18.998 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 23:39:20.038 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229 17-03-17 23:39:20.038 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229 17-03-17 23:39:20.038 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:39:20.038 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:39:20.038 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start. 17-03-17 23:39:20.038 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229 17-03-17 23:39:20.038 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229 17-03-17 23:39:20.038 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:39:20.038 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:39:20.038 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start. 17-03-17 23:39:20.228 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37338 1422 17-03-17 23:39:20.378 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572 17-03-17 23:39:20.438 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 390 ms. 17-03-17 23:39:20.438 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms. 17-03-17 23:39:20.438 -07 000000576 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:39:20.438 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 394 ms. 17-03-17 23:39:20.438 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms. 17-03-17 23:39:20.438 -07 000000409 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:39:20.438 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:39:20.438 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:39:20.438 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms. 17-03-17 23:39:20.448 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms. 17-03-17 23:39:20.878 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072 17-03-17 23:39:20.878 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072 17-03-17 23:39:20.878 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:39:20.878 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:39:20.878 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start. 17-03-17 23:39:20.888 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072 17-03-17 23:39:20.888 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072 17-03-17 23:39:20.888 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:39:20.888 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:39:20.888 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start. 17-03-17 23:39:21.068 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP 2264 17-03-17 23:39:21.078 -07 000000576 INF: FPGA: Recv CAMDBLSNAP 17-03-17 23:39:21.078 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 37338 150' command took 2 ms to send, 2260 ms to get response, and 2272 ms overall 17-03-17 23:39:21.078 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-17 23:39:21.078 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22998046875, Z-Position -0.170123844534066. ------ 17-03-17 23:39:21.078 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:39:21.078 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17692 mm 17-03-17 23:39:21.078 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 23:39:21.078 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True) 17-03-17 23:39:21.078 -07 000000480 INF: Y Motor: Moving to 64.0626 mm, started at 63.2300 mm, delta = 0.8326 mm 17-03-17 23:39:21.078 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 38648, sync = True, waitForSettling = False) 17-03-17 23:39:21.078 -07 000000512 INF: Z Motor: Moving to -0.176919 mm, started at -0.170124 mm, distance = -6.80 um 17-03-17 23:39:21.078 -07 000000486 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:39:21.088 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-17 23:39:21.088 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:39:21.088 -07 000000502 INF: FPGA: Recv YRDPOS 129496 17-03-17 23:39:21.098 -07 000000512 INF: FPGA: Xmit ZDACW 38648\n [Z Motor] 17-03-17 23:39:21.098 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall 17-03-17 23:39:21.098 -07 000000480 INF: Y Motor: Encoder = 129496 = motor step 101168.8 = 63.2305 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:39:21.098 -07 000000576 INF: FPGA: Recv ZDACW 17-03-17 23:39:21.098 -07 000000480 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 23:39:21.098 -07 000000480 INF: Y Motor: Moving 1331 steps-5 17-03-17 23:39:21.108 -07 000000433 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 23:39:21.108 -07 000000512 INF: FPGA: 'ZDACW 38648' command took 0 ms to send, 0 ms to get response, and 21 ms overall 17-03-17 23:39:21.118 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 23:39:21.128 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:39:21.128 -07 000000576 INF: FPGA: Recv ZDACR 38648 17-03-17 23:39:21.138 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-17 23:39:21.138 -07 000000512 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet)) 17-03-17 23:39:21.288 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 404 ms. 17-03-17 23:39:21.288 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms. 17-03-17 23:39:21.288 -07 000000482 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:39:21.288 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 400 ms. 17-03-17 23:39:21.288 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms. 17-03-17 23:39:21.288 -07 000000438 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:39:21.288 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:39:21.298 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms. 17-03-17 23:39:21.298 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms. 17-03-17 23:39:21.298 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms. 17-03-17 23:39:21.308 -07 000000409 INF: FPGA: Recv FOCMRRFOC 17-03-17 23:39:21.308 -07 000000433 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall 17-03-17 23:39:21.338 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 3.996267, 17-03-17 23:39:21.488 -07 000000547 INF: FPGA: Recv YMVTILE 17-03-17 23:39:21.488 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall 17-03-17 23:39:21.528 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:39:21.528 -07 000000541 INF: FPGA: Recv YRDPOS 131200 17-03-17 23:39:21.538 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:39:21.538 -07 000000480 INF: Y Motor: Encoder = 131200 = motor step 102500.0 = 64.0625 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:39:21.538 -07 000000480 INF: Y Motor: Position error before settling (table move) = 0 encoder counts (0.000 mm) 17-03-17 23:39:21.538 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.833 mm, average velocity = 2.129 mm/sec 17-03-17 23:39:22.088 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:39:22.088 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:39:22.488 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:39:22.488 -07 000000547 INF: FPGA: Recv YRDPOS 131200 17-03-17 23:39:22.498 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:39:22.498 -07 000000480 INF: Y Motor: Encoder = 131200 = motor step 102500.0 = 64.0625 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:39:22.498 -07 000000480 INF: Y Motor: After move to 64.062607, error = -0.000107, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 23:39:22.498 -07 000000480 INF: Y Motor: Position error after settling (table move) = 0 encoder counts (0.000 mm), Delta during settling = 0 counts (0.000 mm) 17-03-17 23:39:22.498 -07 000000480 INF: Y Motor: Moved to 64.0625 after 1415 ms (table move) 17-03-17 23:39:22.498 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176919 mm (DAC = 38648) 17-03-17 23:39:22.498 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:22.498 -07 000000409 INF: FPGA: Recv ZSGSRD 36839 17-03-17 23:39:22.508 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-17 23:39:22.508 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:22.508 -07 000000486 INF: FPGA: Recv ZSGSRD 36831 17-03-17 23:39:22.518 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:22.518 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:22.518 -07 000000541 INF: FPGA: Recv ZSGSRD 36830 17-03-17 23:39:22.528 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:22.528 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:22.528 -07 000000576 INF: FPGA: Recv ZSGSRD 36838 17-03-17 23:39:22.538 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:22.538 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:22.538 -07 000000433 INF: FPGA: Recv ZSGSRD 36823 17-03-17 23:39:22.548 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:22.548 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:22.548 -07 000000433 INF: FPGA: Recv ZSGSRD 36839 17-03-17 23:39:22.558 -07 000000618 INF: FPGA: 'ZSGSRD' command took 2 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:22.558 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:22.558 -07 000000541 INF: FPGA: Recv ZSGSRD 36833 17-03-17 23:39:22.568 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:22.568 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:22.568 -07 000000576 INF: FPGA: Recv ZSGSRD 36824 17-03-17 23:39:22.578 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:22.578 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:22.578 -07 000000547 INF: FPGA: Recv ZSGSRD 36831 17-03-17 23:39:22.588 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:22.588 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:22.588 -07 000000433 INF: FPGA: Recv ZSGSRD 36830 17-03-17 23:39:22.598 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:22.598 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:39:22.598 -07 000000459 INF: FPGA: Recv ZPIEZORD 32736 17-03-17 23:39:22.608 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:22.608 -07 000000618 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.897 V. Piezo Error = -9.0 V. 17-03-17 23:39:22.608 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.9 um, Read 10 ADC samples: Avg = 36832 (-176.0 uncal um), Error = 0.9 uncal um, Median = 36831 (-176.0 uncal um), StdDev = 6 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36823 (-176.0 uncal um), Max = 36839 (-176.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um) 17-03-17 23:39:22.608 -07 000000618 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36832, posNoise = 7, negNoise = 9 17-03-17 23:39:22.608 -07 000000618 INF: Z Motor: After move to -0.176919, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:39:22.608 -07 000000618 INF: Z Motor: Settle wait time = 1418 ms, measure time = 104 ms (allowed 150 ms), total time = 1522 ms 17-03-17 23:39:22.608 -07 000000618 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms 17-03-17 23:39:22.658 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1574 ms 17-03-17 23:39:22.658 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 23:39:22.658 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:39:22.658 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:39:22.658 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:39:22.658 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:39:22.658 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 23:39:22.658 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:39:22.658 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-17 23:39:22.658 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 23:39:22.658 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-17 23:39:22.658 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 23:39:22.668 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms. 17-03-17 23:39:22.668 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms. 17-03-17 23:39:22.668 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:39:22.718 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 23:39:23.018 -07 000000433 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-17 23:39:23.018 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-17 23:39:23.018 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 23:39:23.018 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2402648392, 0x0, 559484976) start. 17-03-17 23:39:23.058 -07 000000438 INF: FPGA: Recv @CAMSNAP 380 17-03-17 23:39:23.058 -07 000000618 INF: FPGA: Recv CAMSNAP 17-03-17 23:39:23.058 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 374 ms to get response, and 384 ms overall 17-03-17 23:39:23.148 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2402648392, 0x0, 559484976) end. Duration was 127 ms. 17-03-17 23:39:23.148 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:39:23.148 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms. 17-03-17 23:39:23.148 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms. 17-03-17 23:39:23.158 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:39:23.158 -07 000000502 INF: Autofocus start 17-03-17 23:39:23.158 -07 000000502 INF: MeasureProfile start 17-03-17 23:39:23.158 -07 000000623 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:39:23.168 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 23:39:23.168 -07 000000547 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 23:39:23.168 -07 000000502 INF: MeasureProfile done 17-03-17 23:39:23.168 -07 000000502 INF: X=-16 Z correction [um]=-0.1496812 17-03-17 23:39:23.168 -07 000000502 INF: Autofocus finished 17-03-17 23:39:23.368 -07 000000512 INF: FPGA: Recv FOCMRRIMG 17-03-17 23:39:23.368 -07 000000547 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 23:39:23.368 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.0625, Z-position -0.176939933616475. ---------- 17-03-17 23:39:23.368 -07 000000610 INF: Cycle 77 Tile 6 Exposure Settings A 1037 G 500 T 500 C 1037 17-03-17 23:39:23.368 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37128, sync = True, waitForSettling = True) 17-03-17 23:39:23.368 -07 000000610 INF: Z Motor: Moving to -0.169961 mm, started at -0.176940 mm, distance = 6.98 um 17-03-17 23:39:23.378 -07 000000610 INF: FPGA: Xmit ZDACW 37128\n [Z Motor] 17-03-17 23:39:23.378 -07 000000480 INF: FPGA: Recv ZDACW 17-03-17 23:39:23.388 -07 000000610 INF: FPGA: 'ZDACW 37128' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:39:23.388 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:39:23.388 -07 000000502 INF: FPGA: Recv ZDACR 37128 17-03-17 23:39:23.398 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:23.398 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:39:23.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:23.548 -07 000000512 INF: FPGA: Recv ZSGSRD 35750 17-03-17 23:39:23.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:39:23.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:23.558 -07 000000576 INF: FPGA: Recv ZSGSRD 35750 17-03-17 23:39:23.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:23.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:23.568 -07 000000459 INF: FPGA: Recv ZSGSRD 35745 17-03-17 23:39:23.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:23.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:23.578 -07 000000480 INF: FPGA: Recv ZSGSRD 35751 17-03-17 23:39:23.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:23.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:23.588 -07 000000475 INF: FPGA: Recv ZSGSRD 35751 17-03-17 23:39:23.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:23.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:23.598 -07 000000512 INF: FPGA: Recv ZSGSRD 35746 17-03-17 23:39:23.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:23.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:23.608 -07 000000448 INF: FPGA: Recv ZSGSRD 35748 17-03-17 23:39:23.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:23.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:23.618 -07 000000576 INF: FPGA: Recv ZSGSRD 35748 17-03-17 23:39:23.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:23.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:23.628 -07 000000480 INF: FPGA: Recv ZSGSRD 35748 17-03-17 23:39:23.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:23.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:23.638 -07 000000475 INF: FPGA: Recv ZSGSRD 35747 17-03-17 23:39:23.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:23.648 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:39:23.648 -07 000000618 INF: FPGA: Recv ZPIEZORD 31289 17-03-17 23:39:23.658 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:23.658 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.665 V. Piezo Error = -9.8 V. 17-03-17 23:39:23.658 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.0 um, Read 10 ADC samples: Avg = 35748 (-169.1 uncal um), Error = 0.9 uncal um, Median = 35748 (-169.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35745 (-169.1 uncal um), Max = 35751 (-169.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um) 17-03-17 23:39:23.658 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35748, posNoise = 3, negNoise = 3 17-03-17 23:39:23.658 -07 000000610 INF: Z Motor: After move to -0.169961, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:39:23.658 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms) 17-03-17 23:39:23.658 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:39:23.658 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:39:23.658 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:39:23.658 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:39:23.658 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 23:39:23.658 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:39:23.658 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 23:39:23.658 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 23:39:23.658 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms. 17-03-17 23:39:23.658 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 23:39:23.658 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms. 17-03-17 23:39:23.658 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 23:39:23.668 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-17 23:39:23.668 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 23:39:23.668 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms. 17-03-17 23:39:23.668 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 23:39:23.678 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms. 17-03-17 23:39:23.678 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms. 17-03-17 23:39:23.678 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms. 17-03-17 23:39:23.678 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms. 17-03-17 23:39:23.688 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 37305 150\n [Camera] 17-03-17 23:39:23.888 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 23:39:24.918 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229 17-03-17 23:39:24.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229 17-03-17 23:39:24.928 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:39:24.928 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:39:24.928 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) start. 17-03-17 23:39:24.928 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229 17-03-17 23:39:24.928 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229 17-03-17 23:39:24.928 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:39:24.928 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:39:24.928 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) start. 17-03-17 23:39:25.118 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37305 1422 17-03-17 23:39:25.258 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572 17-03-17 23:39:25.328 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2684358704, 0x0, 391868352) end. Duration was 399 ms. 17-03-17 23:39:25.328 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms. 17-03-17 23:39:25.328 -07 000000502 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:39:25.328 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:39:25.328 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms. 17-03-17 23:39:25.328 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) end. Duration was 400 ms. 17-03-17 23:39:25.328 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms. 17-03-17 23:39:25.328 -07 000000459 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:39:25.328 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:39:25.338 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms. 17-03-17 23:39:25.768 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072 17-03-17 23:39:25.768 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072 17-03-17 23:39:25.768 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072 17-03-17 23:39:25.768 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:39:25.768 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072 17-03-17 23:39:25.768 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:39:25.768 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) start. 17-03-17 23:39:25.768 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:39:25.768 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:39:25.768 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2818576432, 0x0, 418435064) start. 17-03-17 23:39:25.958 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP 2265 17-03-17 23:39:25.958 -07 000000576 INF: FPGA: Recv CAMDBLSNAP 17-03-17 23:39:25.958 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 37305 150' command took 2 ms to send, 2262 ms to get response, and 2272 ms overall 17-03-17 23:39:25.958 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-17 23:39:25.958 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.0625, Z-Position -0.169976087654806. ------ 17-03-17 23:39:25.958 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:39:25.958 -07 000000459 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17677 mm 17-03-17 23:39:25.958 -07 000000459 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 23:39:25.958 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True) 17-03-17 23:39:25.958 -07 000000618 INF: Y Motor: Moving to 64.8926 mm, started at 64.0625 mm, delta = 0.8301 mm 17-03-17 23:39:25.958 -07 000000433 INF: Z Motor: Entering MoveAbsStepped (DAC = 38616, sync = True, waitForSettling = False) 17-03-17 23:39:25.958 -07 000000433 INF: Z Motor: Moving to -0.176773 mm, started at -0.169976 mm, distance = -6.80 um 17-03-17 23:39:25.958 -07 000000547 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:39:25.968 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-17 23:39:25.968 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:39:25.968 -07 000000561 INF: FPGA: Recv YRDPOS 131201 17-03-17 23:39:25.978 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:39:25.978 -07 000000618 INF: Y Motor: Encoder = 131201 = motor step 102500.8 = 64.0630 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:39:25.978 -07 000000438 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 23:39:25.978 -07 000000618 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 23:39:25.978 -07 000000618 INF: Y Motor: Moving 1327 steps0 17-03-17 23:39:25.988 -07 000000433 INF: FPGA: Xmit ZDACW 38616\n [Z Motor] 17-03-17 23:39:25.988 -07 000000512 INF: FPGA: Recv ZDACW 17-03-17 23:39:25.998 -07 000000433 INF: FPGA: 'ZDACW 38616' command took 0 ms to send, 0 ms to get response, and 30 ms overall 17-03-17 23:39:25.998 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 23:39:26.008 -07 000000433 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:39:26.008 -07 000000547 INF: FPGA: Recv ZDACR 38616 17-03-17 23:39:26.018 -07 000000433 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-17 23:39:26.018 -07 000000433 INF: Z Motor: MoveAbsStepped took 50 ms (did NOT wait for settling yet)) 17-03-17 23:39:26.168 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 2818576432, 0x0, 418435064) end. Duration was 404 ms. 17-03-17 23:39:26.168 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms. 17-03-17 23:39:26.168 -07 000000475 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:39:26.168 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) end. Duration was 404 ms. 17-03-17 23:39:26.168 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 406 ms. 17-03-17 23:39:26.168 -07 000000623 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:39:26.178 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:39:26.178 -07 000000547 INF: FPGA: Recv FOCMRRFOC 17-03-17 23:39:26.178 -07 000000438 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall 17-03-17 23:39:26.178 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms. 17-03-17 23:39:26.178 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms. 17-03-17 23:39:26.178 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms. 17-03-17 23:39:26.368 -07 000000448 INF: FPGA: Recv YMVTILE 17-03-17 23:39:26.368 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall 17-03-17 23:39:26.408 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:39:26.408 -07 000000541 INF: FPGA: Recv YRDPOS 132884 17-03-17 23:39:26.418 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-17 23:39:26.418 -07 000000618 INF: Y Motor: Encoder = 132884 = motor step 103815.6 = 64.8848 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:39:26.418 -07 000000618 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm) 17-03-17 23:39:26.418 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.830 mm, average velocity = 2.112 mm/sec 17-03-17 23:39:26.698 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 3.985358, 17-03-17 23:39:27.088 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:39:27.088 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:39:27.368 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:39:27.368 -07 000000486 INF: FPGA: Recv YRDPOS 132884 17-03-17 23:39:27.378 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:39:27.378 -07 000000618 INF: Y Motor: Encoder = 132884 = motor step 103815.6 = 64.8848 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:39:27.398 -07 000000618 INF: Y Motor: After move to 64.892609, error = -0.007843, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 23:39:27.398 -07 000000618 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm) 17-03-17 23:39:27.398 -07 000000618 INF: Y Motor: Moved to 64.8848 after 1435 ms (table move) 17-03-17 23:39:27.398 -07 000000459 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176773 mm (DAC = 38616) 17-03-17 23:39:27.398 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:27.408 -07 000000448 INF: FPGA: Recv ZSGSRD 36808 17-03-17 23:39:27.408 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall 17-03-17 23:39:27.408 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:27.408 -07 000000541 INF: FPGA: Recv ZSGSRD 36810 17-03-17 23:39:27.418 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:27.418 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:27.418 -07 000000475 INF: FPGA: Recv ZSGSRD 36808 17-03-17 23:39:27.428 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:27.428 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:27.428 -07 000000502 INF: FPGA: Recv ZSGSRD 36802 17-03-17 23:39:27.438 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:27.438 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:27.438 -07 000000576 INF: FPGA: Recv ZSGSRD 36797 17-03-17 23:39:27.448 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:27.448 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:27.448 -07 000000541 INF: FPGA: Recv ZSGSRD 36807 17-03-17 23:39:27.458 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:27.458 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:27.458 -07 000000623 INF: FPGA: Recv ZSGSRD 36807 17-03-17 23:39:27.468 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:27.468 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:27.468 -07 000000547 INF: FPGA: Recv ZSGSRD 36814 17-03-17 23:39:27.478 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:27.478 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:27.478 -07 000000448 INF: FPGA: Recv ZSGSRD 36813 17-03-17 23:39:27.488 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:27.488 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:27.488 -07 000000512 INF: FPGA: Recv ZSGSRD 36809 17-03-17 23:39:27.498 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:27.498 -07 000000459 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:39:27.498 -07 000000618 INF: FPGA: Recv ZPIEZORD 32724 17-03-17 23:39:27.508 -07 000000459 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:27.508 -07 000000459 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.9 V, since DAC is at 5.892 V. Piezo Error = -9.0 V. 17-03-17 23:39:27.508 -07 000000459 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.8 um, Read 10 ADC samples: Avg = 36808 (-175.9 uncal um), Error = 0.9 uncal um, Median = 36808 (-175.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36797 (-175.8 uncal um), Max = 36814 (-175.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 11 (0.1 uncal um) 17-03-17 23:39:27.508 -07 000000459 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36808, posNoise = 6, negNoise = 11 17-03-17 23:39:27.508 -07 000000459 INF: Z Motor: After move to -0.176773, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:39:27.508 -07 000000459 INF: Z Motor: Settle wait time = 1438 ms, measure time = 103 ms (allowed 150 ms), total time = 1541 ms 17-03-17 23:39:27.508 -07 000000459 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms 17-03-17 23:39:27.558 -07 000000459 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1593 ms 17-03-17 23:39:27.558 -07 000000459 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 23:39:27.558 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:39:27.558 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:39:27.558 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:39:27.558 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 23:39:27.558 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:39:27.558 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:39:27.558 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:39:27.558 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 23:39:27.568 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-17 23:39:27.568 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 23:39:27.568 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms. 17-03-17 23:39:27.568 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms. 17-03-17 23:39:27.578 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:39:27.618 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 23:39:27.918 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-17 23:39:27.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-17 23:39:27.918 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 23:39:27.918 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2673282832, 0x0, 559484976) start. 17-03-17 23:39:27.958 -07 000000482 INF: FPGA: Recv @CAMSNAP 380 17-03-17 23:39:27.958 -07 000000433 INF: FPGA: Recv CAMSNAP 17-03-17 23:39:27.958 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 385 ms overall 17-03-17 23:39:28.048 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2673282832, 0x0, 559484976) end. Duration was 126 ms. 17-03-17 23:39:28.048 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:39:28.048 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms. 17-03-17 23:39:28.048 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms. 17-03-17 23:39:28.058 -07 000000409 INF: Autofocus start 17-03-17 23:39:28.058 -07 000000409 INF: MeasureProfile start 17-03-17 23:39:28.058 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:39:28.058 -07 000000512 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:39:28.068 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 23:39:28.068 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 23:39:28.068 -07 000000409 INF: MeasureProfile done 17-03-17 23:39:28.068 -07 000000409 INF: X=-144 Z correction [um]=-0.8274319 17-03-17 23:39:28.068 -07 000000409 INF: Autofocus finished 17-03-17 23:39:28.268 -07 000000512 INF: FPGA: Recv FOCMRRIMG 17-03-17 23:39:28.268 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 23:39:28.268 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.884765625, Z-position -0.176785752525072. ---------- 17-03-17 23:39:28.268 -07 000000610 INF: Cycle 77 Tile 7 Exposure Settings A 1037 G 500 T 500 C 1037 17-03-17 23:39:28.278 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36948, sync = True, waitForSettling = True) 17-03-17 23:39:28.278 -07 000000610 INF: Z Motor: Moving to -0.169137 mm, started at -0.176786 mm, distance = 7.65 um 17-03-17 23:39:28.278 -07 000000610 INF: FPGA: Xmit ZDACW 36948\n [Z Motor] 17-03-17 23:39:28.278 -07 000000459 INF: FPGA: Recv ZDACW 17-03-17 23:39:28.288 -07 000000610 INF: FPGA: 'ZDACW 36948' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:28.288 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:39:28.288 -07 000000448 INF: FPGA: Recv ZDACR 36948 17-03-17 23:39:28.298 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:28.298 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:39:28.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:28.448 -07 000000618 INF: FPGA: Recv ZSGSRD 35625 17-03-17 23:39:28.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:39:28.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:28.458 -07 000000502 INF: FPGA: Recv ZSGSRD 35614 17-03-17 23:39:28.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:28.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:28.468 -07 000000480 INF: FPGA: Recv ZSGSRD 35625 17-03-17 23:39:28.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:28.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:28.478 -07 000000475 INF: FPGA: Recv ZSGSRD 35617 17-03-17 23:39:28.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:28.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:28.488 -07 000000482 INF: FPGA: Recv ZSGSRD 35617 17-03-17 23:39:28.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:28.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:28.498 -07 000000618 INF: FPGA: Recv ZSGSRD 35625 17-03-17 23:39:28.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:28.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:28.508 -07 000000502 INF: FPGA: Recv ZSGSRD 35616 17-03-17 23:39:28.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:28.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:28.518 -07 000000459 INF: FPGA: Recv ZSGSRD 35625 17-03-17 23:39:28.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:28.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:28.528 -07 000000433 INF: FPGA: Recv ZSGSRD 35622 17-03-17 23:39:28.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:28.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:28.538 -07 000000480 INF: FPGA: Recv ZSGSRD 35623 17-03-17 23:39:28.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:28.548 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:39:28.548 -07 000000547 INF: FPGA: Recv ZPIEZORD 31141 17-03-17 23:39:28.558 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:28.558 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 56.4 V, since DAC is at 5.638 V. Piezo Error = -9.9 V. 17-03-17 23:39:28.558 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.1 um, Read 10 ADC samples: Avg = 35621 (-168.3 uncal um), Error = 0.8 uncal um, Median = 35622 (-168.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35614 (-168.2 uncal um), Max = 35625 (-168.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um) 17-03-17 23:39:28.558 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35621, posNoise = 4, negNoise = 7 17-03-17 23:39:28.558 -07 000000610 INF: Z Motor: After move to -0.169137, error = -0.000023, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:39:28.558 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms) 17-03-17 23:39:28.558 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:39:28.558 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:39:28.558 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:39:28.558 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:39:28.558 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 23:39:28.558 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:39:28.558 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 23:39:28.558 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 23:39:28.558 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:39:28.558 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 23:39:28.558 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-17 23:39:28.558 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 23:39:28.568 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-17 23:39:28.568 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 23:39:28.568 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-17 23:39:28.568 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 23:39:28.578 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms. 17-03-17 23:39:28.578 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms. 17-03-17 23:39:28.578 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms. 17-03-17 23:39:28.578 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms. 17-03-17 23:39:28.578 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 37124 150\n [Camera] 17-03-17 23:39:28.778 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 23:39:29.818 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229 17-03-17 23:39:29.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229 17-03-17 23:39:29.818 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:39:29.818 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:39:29.818 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2853998696, 0x0, 391868352) start. 17-03-17 23:39:29.828 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229 17-03-17 23:39:29.828 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229 17-03-17 23:39:29.828 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:39:29.828 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:39:29.828 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2889420960, 0x0, 418435064) start. 17-03-17 23:39:30.008 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37124 1422 17-03-17 23:39:30.158 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572 17-03-17 23:39:30.218 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2853998696, 0x0, 391868352) end. Duration was 400 ms. 17-03-17 23:39:30.218 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms. 17-03-17 23:39:30.218 -07 000000448 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:39:30.228 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:39:30.228 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms. 17-03-17 23:39:30.228 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2889420960, 0x0, 418435064) end. Duration was 400 ms. 17-03-17 23:39:30.228 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms. 17-03-17 23:39:30.228 -07 000000433 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:39:30.228 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:39:30.238 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms. 17-03-17 23:39:30.658 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072 17-03-17 23:39:30.658 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072 17-03-17 23:39:30.658 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:39:30.658 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:39:30.668 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2952794160, 0x0, 391868352) start. 17-03-17 23:39:30.668 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072 17-03-17 23:39:30.668 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072 17-03-17 23:39:30.668 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:39:30.828 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:39:30.828 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start. 17-03-17 23:39:30.848 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP 2265 17-03-17 23:39:30.858 -07 000000480 INF: FPGA: Recv CAMDBLSNAP 17-03-17 23:39:30.858 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 37124 150' command took 2 ms to send, 2260 ms to get response, and 2272 ms overall 17-03-17 23:39:30.858 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-17 23:39:30.858 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.884765625, Z-Position -0.169160212712802. ------ 17-03-17 23:39:30.858 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:39:30.858 -07 000000547 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17594 mm 17-03-17 23:39:30.858 -07 000000547 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 23:39:30.858 -07 000000475 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True) 17-03-17 23:39:30.858 -07 000000448 INF: Z Motor: Entering MoveAbsStepped (DAC = 38435, sync = True, waitForSettling = False) 17-03-17 23:39:30.858 -07 000000448 INF: Z Motor: Moving to -0.175944 mm, started at -0.169160 mm, distance = -6.78 um 17-03-17 23:39:30.858 -07 000000459 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:39:30.858 -07 000000475 INF: Y Motor: Moving to 65.7226 mm, started at 64.8848 mm, delta = 0.8378 mm 17-03-17 23:39:30.868 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-17 23:39:30.868 -07 000000448 INF: FPGA: Xmit ZDACW 38435\n [Z Motor] 17-03-17 23:39:30.868 -07 000000502 INF: FPGA: Recv ZDACW 17-03-17 23:39:30.878 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:39:30.878 -07 000000448 INF: FPGA: 'ZDACW 38435' command took 0 ms to send, 0 ms to get response, and 11 ms overall 17-03-17 23:39:30.878 -07 000000482 INF: FPGA: Recv YRDPOS 132884 17-03-17 23:39:30.888 -07 000000623 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 23:39:30.888 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 20 ms overall 17-03-17 23:39:30.888 -07 000000475 INF: Y Motor: Encoder = 132884 = motor step 103815.6 = 64.8848 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:39:30.888 -07 000000475 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 23:39:30.888 -07 000000475 INF: Y Motor: Moving 1341 steps-16 17-03-17 23:39:30.898 -07 000000448 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:39:30.898 -07 000000438 INF: FPGA: Recv ZDACR 38435 17-03-17 23:39:30.908 -07 000000448 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-17 23:39:30.908 -07 000000448 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet)) 17-03-17 23:39:30.908 -07 000000475 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 23:39:31.088 -07 000000576 INF: FPGA: Recv FOCMRRFOC 17-03-17 23:39:31.088 -07 000000623 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall 17-03-17 23:39:31.088 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2952794160, 0x0, 391868352) end. Duration was 425 ms. 17-03-17 23:39:31.088 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 425 ms. 17-03-17 23:39:31.088 -07 000000541 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:39:31.098 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms. 17-03-17 23:39:31.098 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 432 ms. 17-03-17 23:39:31.208 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 383 ms. 17-03-17 23:39:31.208 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 383 ms. 17-03-17 23:39:31.208 -07 000000618 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:39:31.218 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms. 17-03-17 23:39:31.218 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 555 ms. 17-03-17 23:39:31.278 -07 000000627 INF: FPGA: Recv YMVTILE 17-03-17 23:39:31.278 -07 000000475 INF: FPGA: 'YMVTILE 1327' command took 2 ms to send, 368 ms to get response, and 397 ms overall 17-03-17 23:39:31.328 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:39:31.328 -07 000000486 INF: FPGA: Recv YRDPOS 134594 17-03-17 23:39:31.338 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:31.338 -07 000000475 INF: Y Motor: Encoder = 134594 = motor step 105151.6 = 65.7197 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:39:31.338 -07 000000475 INF: Y Motor: Position error before settling (table move) = -6 encoder counts (-0.003 mm) 17-03-17 23:39:31.338 -07 000000475 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.838 mm, average velocity = 2.105 mm/sec 17-03-17 23:39:32.058 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 4.007176, 17-03-17 23:39:32.088 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:39:32.088 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:39:32.288 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:39:32.288 -07 000000627 INF: FPGA: Recv YRDPOS 134594 17-03-17 23:39:32.298 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:32.298 -07 000000475 INF: Y Motor: Encoder = 134594 = motor step 105151.6 = 65.7197 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:39:32.298 -07 000000475 INF: Y Motor: After move to 65.722610, error = -0.002884, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 23:39:32.298 -07 000000475 INF: Y Motor: Position error after settling (table move) = -6 encoder counts (-0.003 mm), Delta during settling = 0 counts (0.000 mm) 17-03-17 23:39:32.298 -07 000000475 INF: Y Motor: Moved to 65.7197 after 1439 ms (table move) 17-03-17 23:39:32.308 -07 000000547 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175944 mm (DAC = 38435) 17-03-17 23:39:32.308 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:32.308 -07 000000502 INF: FPGA: Recv ZSGSRD 36678 17-03-17 23:39:32.318 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:32.318 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:32.318 -07 000000627 INF: FPGA: Recv ZSGSRD 36680 17-03-17 23:39:32.328 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:32.328 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:32.328 -07 000000486 INF: FPGA: Recv ZSGSRD 36680 17-03-17 23:39:32.338 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:32.338 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:32.338 -07 000000438 INF: FPGA: Recv ZSGSRD 36680 17-03-17 23:39:32.348 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:32.348 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:32.348 -07 000000541 INF: FPGA: Recv ZSGSRD 36677 17-03-17 23:39:32.358 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:32.358 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:32.358 -07 000000627 INF: FPGA: Recv ZSGSRD 36677 17-03-17 23:39:32.368 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:32.368 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:32.368 -07 000000576 INF: FPGA: Recv ZSGSRD 36675 17-03-17 23:39:32.378 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:32.378 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:32.378 -07 000000561 INF: FPGA: Recv ZSGSRD 36678 17-03-17 23:39:32.388 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:32.388 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:32.388 -07 000000541 INF: FPGA: Recv ZSGSRD 36677 17-03-17 23:39:32.398 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:32.398 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:32.398 -07 000000627 INF: FPGA: Recv ZSGSRD 36679 17-03-17 23:39:32.408 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:32.408 -07 000000547 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:39:32.408 -07 000000438 INF: FPGA: Recv ZPIEZORD 32553 17-03-17 23:39:32.418 -07 000000547 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:32.418 -07 000000547 INF: Z Motor: Piezo is near 49.5 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.865 V. Piezo Error = -9.1 V. 17-03-17 23:39:32.418 -07 000000547 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.9 um, Read 10 ADC samples: Avg = 36678 (-175.1 uncal um), Error = 0.9 uncal um, Median = 36678 (-175.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 36675 (-175.0 uncal um), Max = 36680 (-175.1 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um) 17-03-17 23:39:32.418 -07 000000547 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36678, posNoise = 2, negNoise = 3 17-03-17 23:39:32.418 -07 000000547 INF: Z Motor: After move to -0.175944, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:39:32.418 -07 000000547 INF: Z Motor: Settle wait time = 1442 ms, measure time = 110 ms (allowed 150 ms), total time = 1552 ms 17-03-17 23:39:32.418 -07 000000547 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms 17-03-17 23:39:32.458 -07 000000547 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1594 ms 17-03-17 23:39:32.458 -07 000000547 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 23:39:32.458 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:39:32.458 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:39:32.458 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:39:32.458 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:39:32.458 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 23:39:32.458 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:39:32.458 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-17 23:39:32.458 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 23:39:32.468 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-17 23:39:32.468 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 23:39:32.468 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms. 17-03-17 23:39:32.468 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms. 17-03-17 23:39:32.478 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:39:32.518 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 23:39:32.818 -07 000000448 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-17 23:39:32.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-17 23:39:32.818 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 23:39:32.818 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2719780968, 0x0, 559484976) start. 17-03-17 23:39:32.858 -07 000000576 INF: FPGA: Recv @CAMSNAP 380 17-03-17 23:39:32.858 -07 000000482 INF: FPGA: Recv CAMSNAP 17-03-17 23:39:32.858 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall 17-03-17 23:39:32.948 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2719780968, 0x0, 559484976) end. Duration was 126 ms. 17-03-17 23:39:32.948 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:39:32.948 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-17 23:39:32.948 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms. 17-03-17 23:39:33.058 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:39:33.058 -07 000000623 INF: Autofocus start 17-03-17 23:39:33.058 -07 000000623 INF: MeasureProfile start 17-03-17 23:39:33.058 -07 000000576 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:39:33.068 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 23:39:33.068 -07 000000486 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 23:39:33.068 -07 000000623 INF: MeasureProfile done 17-03-17 23:39:33.068 -07 000000623 INF: X=-16 Z correction [um]=-0.1496812 17-03-17 23:39:33.068 -07 000000623 INF: Autofocus finished 17-03-17 23:39:33.268 -07 000000438 INF: FPGA: Recv FOCMRRIMG 17-03-17 23:39:33.268 -07 000000486 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 23:39:33.268 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.7197265625, Z-position -0.175950604946643. ---------- 17-03-17 23:39:33.268 -07 000000610 INF: Cycle 77 Tile 8 Exposure Settings A 1037 G 500 T 500 C 1037 17-03-17 23:39:33.268 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36915, sync = True, waitForSettling = True) 17-03-17 23:39:33.268 -07 000000610 INF: Z Motor: Moving to -0.168986 mm, started at -0.175951 mm, distance = 6.96 um 17-03-17 23:39:33.278 -07 000000610 INF: FPGA: Xmit ZDACW 36915\n [Z Motor] 17-03-17 23:39:33.278 -07 000000448 INF: FPGA: Recv ZDACW 17-03-17 23:39:33.288 -07 000000610 INF: FPGA: 'ZDACW 36915' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:39:33.288 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:39:33.288 -07 000000486 INF: FPGA: Recv ZDACR 36915 17-03-17 23:39:33.298 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:33.298 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:39:33.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:33.448 -07 000000512 INF: FPGA: Recv ZSGSRD 35599 17-03-17 23:39:33.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:39:33.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:33.458 -07 000000409 INF: FPGA: Recv ZSGSRD 35596 17-03-17 23:39:33.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:33.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:33.468 -07 000000623 INF: FPGA: Recv ZSGSRD 35597 17-03-17 23:39:33.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:33.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:33.478 -07 000000438 INF: FPGA: Recv ZSGSRD 35593 17-03-17 23:39:33.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:33.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:33.488 -07 000000482 INF: FPGA: Recv ZSGSRD 35593 17-03-17 23:39:33.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:33.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:33.498 -07 000000433 INF: FPGA: Recv ZSGSRD 35596 17-03-17 23:39:33.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:33.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:33.508 -07 000000618 INF: FPGA: Recv ZSGSRD 35594 17-03-17 23:39:33.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:33.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:33.518 -07 000000623 INF: FPGA: Recv ZSGSRD 35598 17-03-17 23:39:33.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:33.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:33.528 -07 000000576 INF: FPGA: Recv ZSGSRD 35591 17-03-17 23:39:33.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:33.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:33.538 -07 000000482 INF: FPGA: Recv ZSGSRD 35597 17-03-17 23:39:33.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:33.548 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:39:33.548 -07 000000480 INF: FPGA: Recv ZPIEZORD 31124 17-03-17 23:39:33.558 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:33.558 -07 000000610 INF: Z Motor: Piezo is near 46.5 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.633 V. Piezo Error = -9.8 V. 17-03-17 23:39:33.558 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.0 um, Read 10 ADC samples: Avg = 35595 (-168.1 uncal um), Error = 0.9 uncal um, Median = 35596 (-168.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35591 (-168.1 uncal um), Max = 35599 (-168.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um) 17-03-17 23:39:33.558 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35595, posNoise = 4, negNoise = 4 17-03-17 23:39:33.558 -07 000000610 INF: Z Motor: After move to -0.168986, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:39:33.558 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms) 17-03-17 23:39:33.558 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:39:33.558 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:39:33.558 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:39:33.558 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 23:39:33.558 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:39:33.558 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:39:33.558 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 23:39:33.558 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 23:39:33.558 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:39:33.558 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 23:39:33.558 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-17 23:39:33.558 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 23:39:33.568 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms. 17-03-17 23:39:33.568 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 23:39:33.568 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms. 17-03-17 23:39:33.568 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 23:39:33.578 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms. 17-03-17 23:39:33.578 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms. 17-03-17 23:39:33.578 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms. 17-03-17 23:39:33.578 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms. 17-03-17 23:39:33.578 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 37092 150\n [Camera] 17-03-17 23:39:33.778 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 23:39:34.818 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229 17-03-17 23:39:34.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229 17-03-17 23:39:34.818 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:39:34.818 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229 17-03-17 23:39:34.818 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229 17-03-17 23:39:34.818 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:39:34.818 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:39:34.818 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start. 17-03-17 23:39:34.828 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:39:34.828 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2738862352, 0x0, 391868352) start. 17-03-17 23:39:35.008 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37092 1422 17-03-17 23:39:35.158 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572 17-03-17 23:39:35.218 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 397 ms. 17-03-17 23:39:35.218 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms. 17-03-17 23:39:35.218 -07 000000561 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:39:35.218 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2738862352, 0x0, 391868352) end. Duration was 396 ms. 17-03-17 23:39:35.218 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms. 17-03-17 23:39:35.218 -07 000000475 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:39:35.218 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:39:35.228 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:39:35.228 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms. 17-03-17 23:39:35.228 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms. 17-03-17 23:39:35.658 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072 17-03-17 23:39:35.658 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072 17-03-17 23:39:35.658 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:39:35.778 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072 17-03-17 23:39:35.778 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072 17-03-17 23:39:35.778 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:39:35.778 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) start. 17-03-17 23:39:35.778 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:39:35.778 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:39:35.778 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start. 17-03-17 23:39:35.848 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 2265 17-03-17 23:39:35.848 -07 000000459 INF: FPGA: Recv CAMDBLSNAP 17-03-17 23:39:35.848 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 37092 150' command took 2 ms to send, 2269 ms to get response, and 2272 ms overall 17-03-17 23:39:35.858 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-17 23:39:35.858 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.7197265625, Z-Position -0.168993183197116. ------ 17-03-17 23:39:35.858 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:39:35.858 -07 000000627 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17579 mm 17-03-17 23:39:35.858 -07 000000627 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 23:39:35.858 -07 000000409 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True) 17-03-17 23:39:35.858 -07 000000409 INF: Y Motor: Moving to 66.5526 mm, started at 65.7197 mm, delta = 0.8329 mm 17-03-17 23:39:35.858 -07 000000512 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:39:35.858 -07 000000433 INF: Z Motor: Entering MoveAbsStepped (DAC = 38402, sync = True, waitForSettling = False) 17-03-17 23:39:35.858 -07 000000433 INF: Z Motor: Moving to -0.175793 mm, started at -0.168993 mm, distance = -6.80 um 17-03-17 23:39:35.868 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-17 23:39:35.868 -07 000000433 INF: FPGA: Xmit ZDACW 38402\n [Z Motor] 17-03-17 23:39:35.868 -07 000000482 INF: FPGA: Recv ZDACW 17-03-17 23:39:35.878 -07 000000433 INF: FPGA: 'ZDACW 38402' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:39:35.878 -07 000000433 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:39:35.878 -07 000000512 INF: FPGA: Recv ZDACR 38402 17-03-17 23:39:35.888 -07 000000433 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:35.888 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:39:35.888 -07 000000433 INF: Z Motor: MoveAbsStepped took 21 ms (did NOT wait for settling yet)) 17-03-17 23:39:35.888 -07 000000512 INF: FPGA: Recv YRDPOS 134594 17-03-17 23:39:35.898 -07 000000547 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 23:39:35.898 -07 000000409 INF: FPGA: 'YRDPOS' command took 2 ms to send, 0 ms to get response, and 31 ms overall 17-03-17 23:39:35.898 -07 000000409 INF: Y Motor: Encoder = 134594 = motor step 105151.6 = 65.7197 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:39:35.898 -07 000000409 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 23:39:35.898 -07 000000409 INF: Y Motor: Moving 1333 steps-6 17-03-17 23:39:35.908 -07 000000409 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 23:39:36.098 -07 000000561 INF: FPGA: Recv FOCMRRFOC 17-03-17 23:39:36.098 -07 000000547 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 232 ms overall 17-03-17 23:39:36.178 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 396 ms. 17-03-17 23:39:36.178 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms. 17-03-17 23:39:36.178 -07 000000576 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:39:36.178 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) end. Duration was 404 ms. 17-03-17 23:39:36.178 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms. 17-03-17 23:39:36.178 -07 000000438 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:39:36.178 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:39:36.188 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:39:36.188 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 525 ms. 17-03-17 23:39:36.188 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms. 17-03-17 23:39:36.278 -07 000000459 INF: FPGA: Recv YMVTILE 17-03-17 23:39:36.278 -07 000000409 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall 17-03-17 23:39:36.318 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:39:36.318 -07 000000623 INF: FPGA: Recv YRDPOS 136285 17-03-17 23:39:36.328 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:39:36.328 -07 000000409 INF: Y Motor: Encoder = 136285 = motor step 106472.7 = 66.5454 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:39:36.328 -07 000000409 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm) 17-03-17 23:39:36.328 -07 000000409 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.833 mm, average velocity = 2.152 mm/sec 17-03-17 23:39:37.088 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:39:37.088 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:39:37.278 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:39:37.278 -07 000000482 INF: FPGA: Recv YRDPOS 136285 17-03-17 23:39:37.288 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:37.288 -07 000000409 INF: Y Motor: Encoder = 136285 = motor step 106472.7 = 66.5454 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:39:37.308 -07 000000409 INF: Y Motor: After move to 66.552605, error = -0.007195, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 23:39:37.308 -07 000000409 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm) 17-03-17 23:39:37.308 -07 000000409 INF: Y Motor: Moved to 66.5454 after 1446 ms (table move) 17-03-17 23:39:37.308 -07 000000627 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175793 mm (DAC = 38402) 17-03-17 23:39:37.308 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:37.318 -07 000000480 INF: FPGA: Recv ZSGSRD 36653 17-03-17 23:39:37.318 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall 17-03-17 23:39:37.318 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:37.318 -07 000000482 INF: FPGA: Recv ZSGSRD 36657 17-03-17 23:39:37.328 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:37.328 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:37.328 -07 000000561 INF: FPGA: Recv ZSGSRD 36657 17-03-17 23:39:37.338 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:37.338 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:37.338 -07 000000475 INF: FPGA: Recv ZSGSRD 36652 17-03-17 23:39:37.348 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:37.348 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:37.348 -07 000000486 INF: FPGA: Recv ZSGSRD 36654 17-03-17 23:39:37.358 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:37.358 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:37.358 -07 000000482 INF: FPGA: Recv ZSGSRD 36653 17-03-17 23:39:37.368 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:37.368 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:37.368 -07 000000433 INF: FPGA: Recv ZSGSRD 36658 17-03-17 23:39:37.378 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:37.378 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:37.378 -07 000000541 INF: FPGA: Recv ZSGSRD 36660 17-03-17 23:39:37.388 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:37.388 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:37.388 -07 000000486 INF: FPGA: Recv ZSGSRD 36655 17-03-17 23:39:37.398 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:37.398 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:37.398 -07 000000482 INF: FPGA: Recv ZSGSRD 36651 17-03-17 23:39:37.408 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:37.418 -07 000000627 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:39:37.418 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 3.989471, 17-03-17 23:39:37.418 -07 000000433 INF: FPGA: Recv ZPIEZORD 32576 17-03-17 23:39:37.428 -07 000000627 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-17 23:39:37.428 -07 000000627 INF: Z Motor: Piezo is near 49.6 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.860 V. Piezo Error = -9.0 V. 17-03-17 23:39:37.428 -07 000000627 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.8 um, Read 10 ADC samples: Avg = 36655 (-174.9 uncal um), Error = 0.9 uncal um, Median = 36654 (-174.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36651 (-174.9 uncal um), Max = 36660 (-174.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um) 17-03-17 23:39:37.428 -07 000000627 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36655, posNoise = 5, negNoise = 4 17-03-17 23:39:37.428 -07 000000627 INF: Z Motor: After move to -0.175793, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:39:37.428 -07 000000627 INF: Z Motor: Settle wait time = 1448 ms, measure time = 113 ms (allowed 150 ms), total time = 1561 ms 17-03-17 23:39:37.428 -07 000000627 INF: Z Motor: Waiting extra 37 ms after reading position to reach expected total of 150 ms 17-03-17 23:39:37.468 -07 000000627 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1604 ms 17-03-17 23:39:37.468 -07 000000627 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 23:39:37.468 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:39:37.468 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:39:37.468 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:39:37.468 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:39:37.468 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 23:39:37.468 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:39:37.468 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:39:37.468 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 23:39:37.478 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-17 23:39:37.478 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 23:39:37.478 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms. 17-03-17 23:39:37.478 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms. 17-03-17 23:39:37.488 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:39:37.528 -07 000000482 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 23:39:37.828 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-17 23:39:37.828 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-17 23:39:37.828 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 23:39:37.828 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2719780968, 0x0, 559484976) start. 17-03-17 23:39:37.868 -07 000000438 INF: FPGA: Recv @CAMSNAP 380 17-03-17 23:39:37.868 -07 000000623 INF: FPGA: Recv CAMSNAP 17-03-17 23:39:37.868 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall 17-03-17 23:39:37.948 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2719780968, 0x0, 559484976) end. Duration was 116 ms. 17-03-17 23:39:37.948 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:39:37.948 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms. 17-03-17 23:39:37.948 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms. 17-03-17 23:39:37.968 -07 000000480 INF: Autofocus start 17-03-17 23:39:37.968 -07 000000480 INF: MeasureProfile start 17-03-17 23:39:37.968 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:39:37.968 -07 000000448 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:39:37.978 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 23:39:37.978 -07 000000459 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 23:39:37.978 -07 000000480 INF: MeasureProfile done 17-03-17 23:39:37.978 -07 000000480 INF: X=-48 Z correction [um]=-0.3191189 17-03-17 23:39:37.978 -07 000000480 INF: Autofocus finished 17-03-17 23:39:38.178 -07 000000438 INF: FPGA: Recv FOCMRRIMG 17-03-17 23:39:38.178 -07 000000459 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 23:39:38.178 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.54541015625, Z-position -0.175802848067383. ---------- 17-03-17 23:39:38.178 -07 000000610 INF: Cycle 77 Tile 9 Exposure Settings A 1037 G 500 T 500 C 1037 17-03-17 23:39:38.188 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36845, sync = True, waitForSettling = True) 17-03-17 23:39:38.188 -07 000000610 INF: Z Motor: Moving to -0.168666 mm, started at -0.175803 mm, distance = 7.14 um 17-03-17 23:39:38.188 -07 000000610 INF: FPGA: Xmit ZDACW 36845\n [Z Motor] 17-03-17 23:39:38.188 -07 000000409 INF: FPGA: Recv ZDACW 17-03-17 23:39:38.198 -07 000000610 INF: FPGA: 'ZDACW 36845' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:38.198 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:39:38.198 -07 000000459 INF: FPGA: Recv ZDACR 36845 17-03-17 23:39:38.208 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:38.208 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:39:38.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:38.358 -07 000000433 INF: FPGA: Recv ZSGSRD 35546 17-03-17 23:39:38.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:39:38.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:38.368 -07 000000502 INF: FPGA: Recv ZSGSRD 35543 17-03-17 23:39:38.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:38.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:38.378 -07 000000618 INF: FPGA: Recv ZSGSRD 35550 17-03-17 23:39:38.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:38.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:38.388 -07 000000576 INF: FPGA: Recv ZSGSRD 35546 17-03-17 23:39:38.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:38.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:38.398 -07 000000459 INF: FPGA: Recv ZSGSRD 35546 17-03-17 23:39:38.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:38.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:38.408 -07 000000433 INF: FPGA: Recv ZSGSRD 35547 17-03-17 23:39:38.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:38.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:38.418 -07 000000448 INF: FPGA: Recv ZSGSRD 35542 17-03-17 23:39:38.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:38.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:38.428 -07 000000409 INF: FPGA: Recv ZSGSRD 35544 17-03-17 23:39:38.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:38.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:38.438 -07 000000541 INF: FPGA: Recv ZSGSRD 35547 17-03-17 23:39:38.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:38.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:38.448 -07 000000486 INF: FPGA: Recv ZSGSRD 35545 17-03-17 23:39:38.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:38.458 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:39:38.458 -07 000000618 INF: FPGA: Recv ZPIEZORD 31047 17-03-17 23:39:38.468 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:39:38.468 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.622 V. Piezo Error = -9.9 V. 17-03-17 23:39:38.468 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.7 um, Read 10 ADC samples: Avg = 35546 (-167.8 uncal um), Error = 0.9 uncal um, Median = 35546 (-167.8 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35542 (-167.8 uncal um), Max = 35550 (-167.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um) 17-03-17 23:39:38.468 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35546, posNoise = 4, negNoise = 4 17-03-17 23:39:38.468 -07 000000610 INF: Z Motor: After move to -0.168666, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:39:38.468 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms) 17-03-17 23:39:38.468 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:39:38.468 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:39:38.468 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:39:38.468 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:39:38.468 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 23:39:38.468 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:39:38.468 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 23:39:38.468 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 23:39:38.468 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:39:38.468 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 23:39:38.468 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-17 23:39:38.468 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 23:39:38.468 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-17 23:39:38.468 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 23:39:38.478 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-17 23:39:38.478 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 23:39:38.488 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms. 17-03-17 23:39:38.488 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms. 17-03-17 23:39:38.488 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms. 17-03-17 23:39:38.488 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms. 17-03-17 23:39:38.488 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 37022 150\n [Camera] 17-03-17 23:39:38.688 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 23:39:39.728 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229 17-03-17 23:39:39.728 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229 17-03-17 23:39:39.728 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:39:39.728 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:39:39.728 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 648609776, 0x0, 391868352) start. 17-03-17 23:39:39.738 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229 17-03-17 23:39:39.738 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229 17-03-17 23:39:39.738 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:39:39.738 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:39:39.738 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start. 17-03-17 23:39:39.918 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37022 1422 17-03-17 23:39:40.078 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572 17-03-17 23:39:40.128 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 389 ms. 17-03-17 23:39:40.128 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms. 17-03-17 23:39:40.128 -07 000000623 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:39:40.128 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 648609776, 0x0, 391868352) end. Duration was 394 ms. 17-03-17 23:39:40.128 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms. 17-03-17 23:39:40.128 -07 000000627 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:39:40.128 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:39:40.128 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:39:40.128 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 398 ms. 17-03-17 23:39:40.138 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms. 17-03-17 23:39:40.578 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072 17-03-17 23:39:40.578 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072 17-03-17 23:39:40.578 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:39:40.578 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:39:40.578 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) start. 17-03-17 23:39:40.578 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072 17-03-17 23:39:40.578 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072 17-03-17 23:39:40.578 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:39:40.578 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:39:40.578 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2751332112, 0x0, 418435064) start. 17-03-17 23:39:40.768 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 2265 17-03-17 23:39:40.768 -07 000000547 INF: FPGA: Recv CAMDBLSNAP 17-03-17 23:39:40.768 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 37022 150' command took 3 ms to send, 2261 ms to get response, and 2273 ms overall 17-03-17 23:39:40.768 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-17 23:39:40.768 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.54541015625, Z-Position -0.16867839680217. ------ 17-03-17 23:39:40.768 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:39:40.768 -07 000000623 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17548 mm 17-03-17 23:39:40.768 -07 000000623 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 23:39:40.778 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True) 17-03-17 23:39:40.778 -07 000000438 INF: Y Motor: Moving to 67.3826 mm, started at 66.5454 mm, delta = 0.8372 mm 17-03-17 23:39:40.778 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:39:40.778 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 38333, sync = True, waitForSettling = False) 17-03-17 23:39:40.778 -07 000000502 INF: Z Motor: Moving to -0.175477 mm, started at -0.168678 mm, distance = -6.80 um 17-03-17 23:39:40.778 -07 000000512 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:39:40.778 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 4 ms overall 17-03-17 23:39:40.778 -07 000000409 INF: FPGA: Recv YRDPOS 136285 17-03-17 23:39:40.788 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:39:40.788 -07 000000438 INF: Y Motor: Encoder = 136285 = motor step 106472.7 = 66.5454 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:39:40.788 -07 000000438 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 23:39:40.788 -07 000000438 INF: Y Motor: Moving 1340 steps-15 17-03-17 23:39:40.788 -07 000000482 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 23:39:40.798 -07 000000502 INF: FPGA: Xmit ZDACW 38333\n [Z Motor] 17-03-17 23:39:40.798 -07 000000561 INF: FPGA: Recv ZDACW 17-03-17 23:39:40.808 -07 000000502 INF: FPGA: 'ZDACW 38333' command took 0 ms to send, 0 ms to get response, and 27 ms overall 17-03-17 23:39:40.808 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 23:39:40.818 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:39:40.818 -07 000000618 INF: FPGA: Recv ZDACR 38333 17-03-17 23:39:40.828 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-17 23:39:40.828 -07 000000502 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet)) 17-03-17 23:39:40.978 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) end. Duration was 404 ms. 17-03-17 23:39:40.978 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms. 17-03-17 23:39:40.978 -07 000000459 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:39:40.978 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2751332112, 0x0, 418435064) end. Duration was 402 ms. 17-03-17 23:39:40.978 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms. 17-03-17 23:39:40.978 -07 000000541 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:39:40.988 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:39:40.988 -07 000000561 INF: FPGA: Recv FOCMRRFOC 17-03-17 23:39:40.988 -07 000000482 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 210 ms overall 17-03-17 23:39:40.988 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms. 17-03-17 23:39:40.988 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 414 ms. 17-03-17 23:39:40.998 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms. 17-03-17 23:39:41.178 -07 000000475 INF: FPGA: Recv YMVTILE 17-03-17 23:39:41.178 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall 17-03-17 23:39:41.228 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:39:41.228 -07 000000482 INF: FPGA: Recv YRDPOS 137989 17-03-17 23:39:41.238 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:39:41.238 -07 000000438 INF: Y Motor: Encoder = 137989 = motor step 107803.9 = 67.3774 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:39:41.238 -07 000000438 INF: Y Motor: Position error before settling (table move) = -11 encoder counts (-0.005 mm) 17-03-17 23:39:41.238 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.837 mm, average velocity = 2.104 mm/sec 17-03-17 23:39:42.088 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:39:42.088 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:39:42.188 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:39:42.188 -07 000000480 INF: FPGA: Recv YRDPOS 137989 17-03-17 23:39:42.198 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:39:42.198 -07 000000438 INF: Y Motor: Encoder = 137989 = motor step 107803.9 = 67.3774 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:39:42.208 -07 000000438 INF: Y Motor: After move to 67.382607, error = -0.005165, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 23:39:42.208 -07 000000438 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm) 17-03-17 23:39:42.208 -07 000000438 INF: Y Motor: Moved to 67.3774 after 1437 ms (table move) 17-03-17 23:39:42.218 -07 000000623 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175477 mm (DAC = 38333) 17-03-17 23:39:42.218 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:42.218 -07 000000459 INF: FPGA: Recv ZSGSRD 36605 17-03-17 23:39:42.228 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:39:42.228 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:42.228 -07 000000475 INF: FPGA: Recv ZSGSRD 36601 17-03-17 23:39:42.238 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:42.238 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:42.238 -07 000000502 INF: FPGA: Recv ZSGSRD 36602 17-03-17 23:39:42.248 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:42.248 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:42.248 -07 000000547 INF: FPGA: Recv ZSGSRD 36606 17-03-17 23:39:42.258 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:42.258 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:42.258 -07 000000459 INF: FPGA: Recv ZSGSRD 36603 17-03-17 23:39:42.268 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:42.268 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:42.268 -07 000000409 INF: FPGA: Recv ZSGSRD 36604 17-03-17 23:39:42.278 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:42.278 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:42.278 -07 000000561 INF: FPGA: Recv ZSGSRD 36607 17-03-17 23:39:42.288 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:42.288 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:42.288 -07 000000448 INF: FPGA: Recv ZSGSRD 36603 17-03-17 23:39:42.298 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:42.298 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:42.298 -07 000000627 INF: FPGA: Recv ZSGSRD 36606 17-03-17 23:39:42.308 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:42.308 -07 000000623 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:42.308 -07 000000512 INF: FPGA: Recv ZSGSRD 36608 17-03-17 23:39:42.318 -07 000000623 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:42.318 -07 000000623 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:39:42.318 -07 000000576 INF: FPGA: Recv ZPIEZORD 32484 17-03-17 23:39:42.328 -07 000000623 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:42.328 -07 000000623 INF: Z Motor: Piezo is near 49.4 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.849 V. Piezo Error = -9.1 V. 17-03-17 23:39:42.328 -07 000000623 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.5 um, Read 10 ADC samples: Avg = 36604 (-174.6 uncal um), Error = 0.9 uncal um, Median = 36604 (-174.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 36601 (-174.6 uncal um), Max = 36608 (-174.6 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um) 17-03-17 23:39:42.328 -07 000000623 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36604, posNoise = 4, negNoise = 3 17-03-17 23:39:42.328 -07 000000623 INF: Z Motor: After move to -0.175477, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:39:42.328 -07 000000623 INF: Z Motor: Settle wait time = 1439 ms, measure time = 109 ms (allowed 150 ms), total time = 1548 ms 17-03-17 23:39:42.328 -07 000000623 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms 17-03-17 23:39:42.378 -07 000000623 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1601 ms 17-03-17 23:39:42.378 -07 000000623 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 23:39:42.378 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:39:42.378 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:39:42.378 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:39:42.378 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:39:42.378 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 23:39:42.378 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:39:42.378 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms. 17-03-17 23:39:42.388 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 23:39:42.388 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms. 17-03-17 23:39:42.388 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 23:39:42.398 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms. 17-03-17 23:39:42.398 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms. 17-03-17 23:39:42.398 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:39:42.438 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 23:39:42.738 -07 000000433 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-17 23:39:42.738 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-17 23:39:42.738 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 23:39:42.858 -07 000000547 INF: FPGA: Recv @CAMSNAP 380 17-03-17 23:39:42.858 -07 000000547 INF: FPGA: Recv CAMSNAP 17-03-17 23:39:42.858 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) start. 17-03-17 23:39:42.858 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 451 ms to get response, and 459 ms overall 17-03-17 23:39:42.878 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 3.994908, 17-03-17 23:39:42.978 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) end. Duration was 120 ms. 17-03-17 23:39:42.978 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:39:42.978 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-17 23:39:42.978 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 235 ms. 17-03-17 23:39:43.058 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:39:43.058 -07 000000475 INF: Autofocus start 17-03-17 23:39:43.058 -07 000000475 INF: MeasureProfile start 17-03-17 23:39:43.058 -07 000000576 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:39:43.068 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 23:39:43.068 -07 000000433 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 23:39:43.068 -07 000000475 INF: MeasureProfile done 17-03-17 23:39:43.068 -07 000000475 INF: X=0 Z correction [um]=-0.0713522 17-03-17 23:39:43.068 -07 000000475 INF: Autofocus finished 17-03-17 23:39:43.268 -07 000000459 INF: FPGA: Recv FOCMRRIMG 17-03-17 23:39:43.268 -07 000000433 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 23:39:43.268 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37744140625, Z-position -0.175475213248153. ---------- 17-03-17 23:39:43.268 -07 000000610 INF: Cycle 77 Tile 10 Exposure Settings A 1037 G 500 T 500 C 1037 17-03-17 23:39:43.278 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36830, sync = True, waitForSettling = True) 17-03-17 23:39:43.278 -07 000000610 INF: Z Motor: Moving to -0.168597 mm, started at -0.175475 mm, distance = 6.88 um 17-03-17 23:39:43.278 -07 000000610 INF: FPGA: Xmit ZDACW 36830\n [Z Motor] 17-03-17 23:39:43.278 -07 000000438 INF: FPGA: Recv ZDACW 17-03-17 23:39:43.288 -07 000000610 INF: FPGA: 'ZDACW 36830' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:43.288 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:39:43.288 -07 000000480 INF: FPGA: Recv ZDACR 36830 17-03-17 23:39:43.298 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:43.298 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:39:43.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:43.448 -07 000000576 INF: FPGA: Recv ZSGSRD 35539 17-03-17 23:39:43.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:39:43.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:43.458 -07 000000502 INF: FPGA: Recv ZSGSRD 35530 17-03-17 23:39:43.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:43.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:43.468 -07 000000547 INF: FPGA: Recv ZSGSRD 35535 17-03-17 23:39:43.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:43.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:43.478 -07 000000438 INF: FPGA: Recv ZSGSRD 35535 17-03-17 23:39:43.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:43.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:43.488 -07 000000480 INF: FPGA: Recv ZSGSRD 35537 17-03-17 23:39:43.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:43.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:43.498 -07 000000541 INF: FPGA: Recv ZSGSRD 35534 17-03-17 23:39:43.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 11 ms overall 17-03-17 23:39:43.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:43.508 -07 000000448 INF: FPGA: Recv ZSGSRD 35537 17-03-17 23:39:43.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:39:43.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:43.518 -07 000000502 INF: FPGA: Recv ZSGSRD 35541 17-03-17 23:39:43.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:43.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:43.528 -07 000000547 INF: FPGA: Recv ZSGSRD 35535 17-03-17 23:39:43.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:43.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:43.538 -07 000000561 INF: FPGA: Recv ZSGSRD 35533 17-03-17 23:39:43.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:43.548 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:39:43.548 -07 000000480 INF: FPGA: Recv ZPIEZORD 31044 17-03-17 23:39:43.558 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:43.558 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.620 V. Piezo Error = -9.9 V. 17-03-17 23:39:43.558 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.6 um, Read 10 ADC samples: Avg = 35536 (-167.7 uncal um), Error = 0.9 uncal um, Median = 35535 (-167.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35530 (-167.7 uncal um), Max = 35541 (-167.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um) 17-03-17 23:39:43.558 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35536, posNoise = 5, negNoise = 6 17-03-17 23:39:43.558 -07 000000610 INF: Z Motor: After move to -0.168597, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:39:43.558 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms) 17-03-17 23:39:43.558 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:39:43.558 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:39:43.558 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:39:43.558 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 23:39:43.558 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:39:43.558 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 23:39:43.558 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 23:39:43.558 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:39:43.558 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:39:43.558 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 23:39:43.558 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-17 23:39:43.558 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 23:39:43.558 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-17 23:39:43.568 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-17 23:39:43.568 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 23:39:43.568 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 23:39:43.578 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms. 17-03-17 23:39:43.578 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms. 17-03-17 23:39:43.578 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms. 17-03-17 23:39:43.578 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms. 17-03-17 23:39:43.578 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 37006 150\n [Camera] 17-03-17 23:39:43.778 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 23:39:44.818 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229 17-03-17 23:39:44.818 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229 17-03-17 23:39:44.818 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:39:44.818 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229 17-03-17 23:39:44.818 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229 17-03-17 23:39:44.818 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:39:44.828 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:39:44.828 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) start. 17-03-17 23:39:44.828 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:39:44.828 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start. 17-03-17 23:39:45.008 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37006 1422 17-03-17 23:39:45.158 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572 17-03-17 23:39:45.228 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) end. Duration was 396 ms. 17-03-17 23:39:45.228 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms. 17-03-17 23:39:45.228 -07 000000618 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:39:45.228 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 396 ms. 17-03-17 23:39:45.228 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms. 17-03-17 23:39:45.228 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:39:45.228 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms. 17-03-17 23:39:45.228 -07 000000547 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:39:45.228 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:39:45.238 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms. 17-03-17 23:39:45.658 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072 17-03-17 23:39:45.658 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072 17-03-17 23:39:45.658 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:39:45.668 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072 17-03-17 23:39:45.668 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072 17-03-17 23:39:45.668 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:39:45.668 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:39:45.668 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) start. 17-03-17 23:39:45.788 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:39:45.788 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) start. 17-03-17 23:39:45.848 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP 2265 17-03-17 23:39:45.858 -07 000000627 INF: FPGA: Recv CAMDBLSNAP 17-03-17 23:39:45.858 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 37006 150' command took 2 ms to send, 2260 ms to get response, and 2272 ms overall 17-03-17 23:39:45.858 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-17 23:39:45.858 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37744140625, Z-Position -0.168614154680752. ------ 17-03-17 23:39:45.858 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:39:45.858 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17540 mm 17-03-17 23:39:45.858 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 23:39:45.858 -07 000000475 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True) 17-03-17 23:39:45.858 -07 000000541 INF: Z Motor: Entering MoveAbsStepped (DAC = 38317, sync = True, waitForSettling = False) 17-03-17 23:39:45.858 -07 000000541 INF: Z Motor: Moving to -0.175404 mm, started at -0.168614 mm, distance = -6.79 um 17-03-17 23:39:45.858 -07 000000448 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:39:45.858 -07 000000475 INF: Y Motor: Moving to 68.2126 mm, started at 67.3774 mm, delta = 0.8352 mm 17-03-17 23:39:45.868 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-17 23:39:45.868 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:39:45.868 -07 000000409 INF: FPGA: Recv YRDPOS 137990 17-03-17 23:39:45.878 -07 000000541 INF: FPGA: Xmit ZDACW 38317\n [Z Motor] 17-03-17 23:39:45.878 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:39:45.878 -07 000000475 INF: Y Motor: Encoder = 137990 = motor step 107804.7 = 67.3779 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:39:45.878 -07 000000627 INF: FPGA: Recv ZDACW 17-03-17 23:39:45.888 -07 000000433 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 23:39:45.888 -07 000000541 INF: FPGA: 'ZDACW 38317' command took 0 ms to send, 0 ms to get response, and 21 ms overall 17-03-17 23:39:45.888 -07 000000475 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 23:39:45.888 -07 000000475 INF: Y Motor: Moving 1335 steps-11 17-03-17 23:39:45.898 -07 000000541 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:39:45.898 -07 000000547 INF: FPGA: Recv ZDACR 38317 17-03-17 23:39:45.908 -07 000000541 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-17 23:39:45.908 -07 000000541 INF: Z Motor: MoveAbsStepped took 41 ms (did NOT wait for settling yet)) 17-03-17 23:39:45.908 -07 000000475 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 23:39:46.058 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2684358704, 0x0, 418435064) end. Duration was 391 ms. 17-03-17 23:39:46.058 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms. 17-03-17 23:39:46.058 -07 000000623 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:39:46.068 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:39:46.068 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms. 17-03-17 23:39:46.088 -07 000000482 INF: FPGA: Recv FOCMRRFOC 17-03-17 23:39:46.088 -07 000000433 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall 17-03-17 23:39:46.178 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) end. Duration was 394 ms. 17-03-17 23:39:46.178 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms. 17-03-17 23:39:46.178 -07 000000486 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:39:46.178 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms. 17-03-17 23:39:46.178 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 519 ms. 17-03-17 23:39:46.278 -07 000000618 INF: FPGA: Recv YMVTILE 17-03-17 23:39:46.278 -07 000000475 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall 17-03-17 23:39:46.318 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:39:46.328 -07 000000409 INF: FPGA: Recv YRDPOS 139697 17-03-17 23:39:46.328 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-17 23:39:46.328 -07 000000475 INF: Y Motor: Encoder = 139697 = motor step 109138.3 = 68.2114 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:39:46.328 -07 000000475 INF: Y Motor: Position error before settling (table move) = -2 encoder counts (-0.001 mm) 17-03-17 23:39:46.328 -07 000000475 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.835 mm, average velocity = 2.104 mm/sec 17-03-17 23:39:47.088 -07 000000409 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:39:47.088 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:39:47.278 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:39:47.278 -07 000000486 INF: FPGA: Recv YRDPOS 139697 17-03-17 23:39:47.288 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:47.288 -07 000000475 INF: Y Motor: Encoder = 139697 = motor step 109138.3 = 68.2114 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:39:47.288 -07 000000475 INF: Y Motor: After move to 68.212608, error = -0.001183, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 23:39:47.288 -07 000000475 INF: Y Motor: Position error after settling (table move) = -2 encoder counts (-0.001 mm), Delta during settling = 0 counts (0.000 mm) 17-03-17 23:39:47.288 -07 000000475 INF: Y Motor: Moved to 68.2114 after 1425 ms (table move) 17-03-17 23:39:47.288 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175404 mm (DAC = 38317) 17-03-17 23:39:47.288 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:47.298 -07 000000438 INF: FPGA: Recv ZSGSRD 36588 17-03-17 23:39:47.298 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall 17-03-17 23:39:47.298 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:47.298 -07 000000482 INF: FPGA: Recv ZSGSRD 36600 17-03-17 23:39:47.308 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:39:47.308 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:47.308 -07 000000459 INF: FPGA: Recv ZSGSRD 36594 17-03-17 23:39:47.318 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:47.318 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:47.318 -07 000000623 INF: FPGA: Recv ZSGSRD 36594 17-03-17 23:39:47.328 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:47.328 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:47.328 -07 000000502 INF: FPGA: Recv ZSGSRD 36589 17-03-17 23:39:47.338 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:47.338 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:47.338 -07 000000486 INF: FPGA: Recv ZSGSRD 36582 17-03-17 23:39:47.348 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:47.348 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:47.348 -07 000000438 INF: FPGA: Recv ZSGSRD 36592 17-03-17 23:39:47.358 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:47.358 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:47.358 -07 000000623 INF: FPGA: Recv ZSGSRD 36599 17-03-17 23:39:47.368 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:47.368 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:47.368 -07 000000541 INF: FPGA: Recv ZSGSRD 36599 17-03-17 23:39:47.378 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:47.378 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:47.378 -07 000000448 INF: FPGA: Recv ZSGSRD 36589 17-03-17 23:39:47.388 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:47.388 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:39:47.388 -07 000000627 INF: FPGA: Recv ZPIEZORD 32414 17-03-17 23:39:47.398 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:47.398 -07 000000576 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.847 V. Piezo Error = -9.2 V. 17-03-17 23:39:47.398 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.4 um, Read 10 ADC samples: Avg = 36593 (-174.5 uncal um), Error = 0.9 uncal um, Median = 36593 (-174.5 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36582 (-174.4 uncal um), Max = 36600 (-174.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 11 (0.1 uncal um) 17-03-17 23:39:47.398 -07 000000576 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36593, posNoise = 7, negNoise = 11 17-03-17 23:39:47.398 -07 000000576 INF: Z Motor: After move to -0.175404, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:39:47.398 -07 000000576 INF: Z Motor: Settle wait time = 1430 ms, measure time = 102 ms (allowed 150 ms), total time = 1532 ms 17-03-17 23:39:47.398 -07 000000576 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms 17-03-17 23:39:47.448 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1584 ms 17-03-17 23:39:47.448 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 23:39:47.448 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:39:47.448 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:39:47.448 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:39:47.448 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:39:47.448 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 23:39:47.448 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:39:47.448 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:39:47.458 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 23:39:47.458 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-17 23:39:47.458 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 23:39:47.468 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms. 17-03-17 23:39:47.468 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms. 17-03-17 23:39:47.468 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:39:47.518 -07 000000541 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 23:39:47.808 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-17 23:39:47.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-17 23:39:47.818 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 23:39:47.818 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1422920864, 0x0, 559484976) start. 17-03-17 23:39:47.848 -07 000000433 INF: FPGA: Recv @CAMSNAP 380 17-03-17 23:39:47.848 -07 000000618 INF: FPGA: Recv CAMSNAP 17-03-17 23:39:47.858 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall 17-03-17 23:39:47.938 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1422920864, 0x0, 559484976) end. Duration was 124 ms. 17-03-17 23:39:47.938 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:39:47.938 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-17 23:39:47.938 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 126 ms. 17-03-17 23:39:47.958 -07 000000409 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:39:47.958 -07 000000433 INF: Autofocus start 17-03-17 23:39:47.958 -07 000000433 INF: MeasureProfile start 17-03-17 23:39:47.958 -07 000000502 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:39:47.968 -07 000000409 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-17 23:39:47.968 -07 000000409 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 23:39:47.968 -07 000000433 INF: MeasureProfile done 17-03-17 23:39:47.968 -07 000000433 INF: X=-64 Z correction [um]=-0.4038377 17-03-17 23:39:47.968 -07 000000433 INF: Autofocus finished 17-03-17 23:39:48.168 -07 000000541 INF: FPGA: Recv FOCMRRIMG 17-03-17 23:39:48.168 -07 000000409 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 23:39:48.168 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.21142578125, Z-position -0.175404546914594. ---------- 17-03-17 23:39:48.168 -07 000000610 INF: Cycle 77 Tile 11 Exposure Settings A 1037 G 500 T 500 C 1037 17-03-17 23:39:48.178 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36741, sync = True, waitForSettling = True) 17-03-17 23:39:48.178 -07 000000610 INF: Z Motor: Moving to -0.168190 mm, started at -0.175405 mm, distance = 7.22 um 17-03-17 23:39:48.178 -07 000000610 INF: FPGA: Xmit ZDACW 36741\n [Z Motor] 17-03-17 23:39:48.178 -07 000000618 INF: FPGA: Recv ZDACW 17-03-17 23:39:48.188 -07 000000610 INF: FPGA: 'ZDACW 36741' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:39:48.188 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:39:48.188 -07 000000502 INF: FPGA: Recv ZDACR 36741 17-03-17 23:39:48.198 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:48.198 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:39:48.238 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 4.011254, 17-03-17 23:39:48.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:48.348 -07 000000547 INF: FPGA: Recv ZSGSRD 35469 17-03-17 23:39:48.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:39:48.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:48.358 -07 000000480 INF: FPGA: Recv ZSGSRD 35472 17-03-17 23:39:48.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:48.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:48.368 -07 000000433 INF: FPGA: Recv ZSGSRD 35471 17-03-17 23:39:48.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:48.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:48.378 -07 000000409 INF: FPGA: Recv ZSGSRD 35465 17-03-17 23:39:48.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:48.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:48.388 -07 000000459 INF: FPGA: Recv ZSGSRD 35473 17-03-17 23:39:48.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:48.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:48.398 -07 000000438 INF: FPGA: Recv ZSGSRD 35471 17-03-17 23:39:48.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:48.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:48.408 -07 000000480 INF: FPGA: Recv ZSGSRD 35472 17-03-17 23:39:48.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:48.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:48.418 -07 000000433 INF: FPGA: Recv ZSGSRD 35466 17-03-17 23:39:48.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:48.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:48.428 -07 000000409 INF: FPGA: Recv ZSGSRD 35471 17-03-17 23:39:48.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:48.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:48.438 -07 000000561 INF: FPGA: Recv ZSGSRD 35473 17-03-17 23:39:48.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:48.448 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:39:48.448 -07 000000512 INF: FPGA: Recv ZPIEZORD 30950 17-03-17 23:39:48.458 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:48.458 -07 000000610 INF: Z Motor: Piezo is near 46.1 V (nominally 0 to 100 V), expect near 56.1 V, since DAC is at 5.606 V. Piezo Error = -9.9 V. 17-03-17 23:39:48.458 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.2 um, Read 10 ADC samples: Avg = 35470 (-167.3 uncal um), Error = 0.9 uncal um, Median = 35471 (-167.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35465 (-167.3 uncal um), Max = 35473 (-167.3 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-17 23:39:48.458 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35470, posNoise = 3, negNoise = 5 17-03-17 23:39:48.458 -07 000000610 INF: Z Motor: After move to -0.168190, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:39:48.458 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms) 17-03-17 23:39:48.458 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:39:48.458 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:39:48.458 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:39:48.458 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:39:48.458 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 23:39:48.458 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:39:48.458 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 23:39:48.458 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 23:39:48.458 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:39:48.458 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 23:39:48.458 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-17 23:39:48.458 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 23:39:48.468 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-17 23:39:48.468 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 23:39:48.468 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-17 23:39:48.468 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 23:39:48.478 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms. 17-03-17 23:39:48.478 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms. 17-03-17 23:39:48.478 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms. 17-03-17 23:39:48.478 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms. 17-03-17 23:39:48.478 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 36918 150\n [Camera] 17-03-17 23:39:48.678 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 23:39:49.718 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229 17-03-17 23:39:49.718 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229 17-03-17 23:39:49.718 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:39:49.718 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:39:49.718 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start. 17-03-17 23:39:49.718 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229 17-03-17 23:39:49.718 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229 17-03-17 23:39:49.728 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:39:49.728 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:39:49.728 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) start. 17-03-17 23:39:49.908 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36918 1422 17-03-17 23:39:50.058 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572 17-03-17 23:39:50.118 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 400 ms. 17-03-17 23:39:50.118 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms. 17-03-17 23:39:50.118 -07 000000459 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:39:50.128 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2719780968, 0x0, 418435064) end. Duration was 399 ms. 17-03-17 23:39:50.128 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms. 17-03-17 23:39:50.128 -07 000000433 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:39:50.128 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:39:50.128 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms. 17-03-17 23:39:50.128 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:39:50.138 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms. 17-03-17 23:39:50.558 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072 17-03-17 23:39:50.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072 17-03-17 23:39:50.568 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:39:50.568 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072 17-03-17 23:39:50.568 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:39:50.568 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) start. 17-03-17 23:39:50.568 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072 17-03-17 23:39:50.568 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:39:50.568 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:39:50.568 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start. 17-03-17 23:39:50.758 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP 2265 17-03-17 23:39:50.758 -07 000000576 INF: FPGA: Recv CAMDBLSNAP 17-03-17 23:39:50.758 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 36918 150' command took 2 ms to send, 2261 ms to get response, and 2272 ms overall 17-03-17 23:39:50.758 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-17 23:39:50.758 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.21142578125, Z-Position -0.168190156679396. ------ 17-03-17 23:39:50.758 -07 000000475 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17500 mm 17-03-17 23:39:50.758 -07 000000475 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 23:39:50.758 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:39:50.768 -07 000000512 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:39:50.768 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall 17-03-17 23:39:50.768 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True) 17-03-17 23:39:50.768 -07 000000623 INF: Y Motor: Moving to 69.0426 mm, started at 68.2114 mm, delta = 0.8312 mm 17-03-17 23:39:50.768 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:39:50.768 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 38229, sync = True, waitForSettling = False) 17-03-17 23:39:50.768 -07 000000486 INF: Z Motor: Moving to -0.175001 mm, started at -0.168190 mm, distance = -6.81 um 17-03-17 23:39:50.768 -07 000000459 INF: FPGA: Recv YRDPOS 139697 17-03-17 23:39:50.778 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:39:50.778 -07 000000486 INF: FPGA: Xmit ZDACW 38229\n [Z Motor] 17-03-17 23:39:50.778 -07 000000623 INF: Y Motor: Encoder = 139697 = motor step 109138.3 = 68.2114 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:39:50.778 -07 000000623 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 23:39:50.778 -07 000000623 INF: Y Motor: Moving 1330 steps-2 17-03-17 23:39:50.778 -07 000000482 INF: FPGA: Recv ZDACW 17-03-17 23:39:50.788 -07 000000486 INF: FPGA: 'ZDACW 38229' command took 0 ms to send, 0 ms to get response, and 17 ms overall 17-03-17 23:39:50.788 -07 000000541 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 23:39:50.798 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 23:39:50.808 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:39:50.808 -07 000000618 INF: FPGA: Recv ZDACR 38229 17-03-17 23:39:50.818 -07 000000486 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-17 23:39:50.818 -07 000000486 INF: Z Motor: MoveAbsStepped took 47 ms (did NOT wait for settling yet)) 17-03-17 23:39:50.958 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 391 ms. 17-03-17 23:39:50.958 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms. 17-03-17 23:39:50.958 -07 000000433 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:39:50.958 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2755203232, 0x0, 391868352) end. Duration was 395 ms. 17-03-17 23:39:50.958 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms. 17-03-17 23:39:50.958 -07 000000627 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:39:50.958 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:39:50.968 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:39:50.968 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms. 17-03-17 23:39:50.968 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms. 17-03-17 23:39:50.988 -07 000000561 INF: FPGA: Recv FOCMRRFOC 17-03-17 23:39:50.988 -07 000000541 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 220 ms overall 17-03-17 23:39:51.168 -07 000000438 INF: FPGA: Recv YMVTILE 17-03-17 23:39:51.168 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall 17-03-17 23:39:51.208 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:39:51.208 -07 000000448 INF: FPGA: Recv YRDPOS 141380 17-03-17 23:39:51.218 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:39:51.218 -07 000000623 INF: Y Motor: Encoder = 141380 = motor step 110453.1 = 69.0332 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:39:51.218 -07 000000623 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm) 17-03-17 23:39:51.218 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.831 mm, average velocity = 2.094 mm/sec 17-03-17 23:39:52.088 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:39:52.088 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:39:52.168 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:39:52.168 -07 000000502 INF: FPGA: Recv YRDPOS 141380 17-03-17 23:39:52.178 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:52.178 -07 000000623 INF: Y Motor: Encoder = 141380 = motor step 110453.1 = 69.0332 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:39:52.198 -07 000000623 INF: Y Motor: After move to 69.042610, error = -0.009407, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 23:39:52.198 -07 000000623 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm) 17-03-17 23:39:52.198 -07 000000623 INF: Y Motor: Moved to 69.0332 after 1434 ms (table move) 17-03-17 23:39:52.208 -07 000000475 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175001 mm (DAC = 38229) 17-03-17 23:39:52.208 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:52.208 -07 000000561 INF: FPGA: Recv ZSGSRD 36536 17-03-17 23:39:52.218 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:52.218 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:52.218 -07 000000448 INF: FPGA: Recv ZSGSRD 36533 17-03-17 23:39:52.228 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:52.228 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:52.228 -07 000000512 INF: FPGA: Recv ZSGSRD 36531 17-03-17 23:39:52.238 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:52.238 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:52.238 -07 000000409 INF: FPGA: Recv ZSGSRD 36531 17-03-17 23:39:52.248 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:52.248 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:52.248 -07 000000433 INF: FPGA: Recv ZSGSRD 36536 17-03-17 23:39:52.258 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:52.258 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:52.258 -07 000000502 INF: FPGA: Recv ZSGSRD 36534 17-03-17 23:39:52.268 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:52.268 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:52.268 -07 000000438 INF: FPGA: Recv ZSGSRD 36528 17-03-17 23:39:52.278 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:52.278 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:52.278 -07 000000627 INF: FPGA: Recv ZSGSRD 36530 17-03-17 23:39:52.288 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:52.288 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:52.288 -07 000000459 INF: FPGA: Recv ZSGSRD 36533 17-03-17 23:39:52.298 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:52.298 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:52.298 -07 000000502 INF: FPGA: Recv ZSGSRD 36530 17-03-17 23:39:52.308 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:52.308 -07 000000475 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:39:52.308 -07 000000561 INF: FPGA: Recv ZPIEZORD 32361 17-03-17 23:39:52.318 -07 000000475 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:52.318 -07 000000475 INF: Z Motor: Piezo is near 49.1 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.833 V. Piezo Error = -9.2 V. 17-03-17 23:39:52.318 -07 000000475 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.0 um, Read 10 ADC samples: Avg = 36532 (-174.1 uncal um), Error = 0.9 uncal um, Median = 36532 (-174.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36528 (-174.1 uncal um), Max = 36536 (-174.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um) 17-03-17 23:39:52.318 -07 000000475 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36532, posNoise = 4, negNoise = 4 17-03-17 23:39:52.318 -07 000000475 INF: Z Motor: After move to -0.175001, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:39:52.318 -07 000000475 INF: Z Motor: Settle wait time = 1437 ms, measure time = 110 ms (allowed 150 ms), total time = 1547 ms 17-03-17 23:39:52.318 -07 000000475 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms 17-03-17 23:39:52.358 -07 000000475 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1591 ms 17-03-17 23:39:52.358 -07 000000475 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 23:39:52.358 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:39:52.358 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:39:52.358 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:39:52.358 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:39:52.358 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 23:39:52.358 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:39:52.358 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:39:52.358 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 23:39:52.368 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-17 23:39:52.368 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 23:39:52.368 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms. 17-03-17 23:39:52.368 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms. 17-03-17 23:39:52.378 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:39:52.418 -07 000000433 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 23:39:52.718 -07 000000448 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-17 23:39:52.718 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-17 23:39:52.718 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 23:39:52.718 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1458877312, 0x0, 559484976) start. 17-03-17 23:39:52.758 -07 000000541 INF: FPGA: Recv @CAMSNAP 380 17-03-17 23:39:52.758 -07 000000502 INF: FPGA: Recv CAMSNAP 17-03-17 23:39:52.758 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 385 ms overall 17-03-17 23:39:52.838 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1458877312, 0x0, 559484976) end. Duration was 119 ms. 17-03-17 23:39:52.838 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:39:52.848 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms. 17-03-17 23:39:52.848 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms. 17-03-17 23:39:52.868 -07 000000486 INF: Autofocus start 17-03-17 23:39:52.868 -07 000000486 INF: MeasureProfile start 17-03-17 23:39:52.868 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:39:52.868 -07 000000482 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:39:52.878 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:52.878 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 23:39:52.878 -07 000000486 INF: MeasureProfile done 17-03-17 23:39:52.878 -07 000000486 INF: X=-16 Z correction [um]=-0.1496812 17-03-17 23:39:52.878 -07 000000486 INF: Autofocus finished 17-03-17 23:39:53.078 -07 000000480 INF: FPGA: Recv FOCMRRIMG 17-03-17 23:39:53.078 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 204 ms overall 17-03-17 23:39:53.088 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.033203125, Z-position -0.175012669973946. ---------- 17-03-17 23:39:53.088 -07 000000610 INF: Cycle 77 Tile 12 Exposure Settings A 1037 G 500 T 500 C 1037 17-03-17 23:39:53.088 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36709, sync = True, waitForSettling = True) 17-03-17 23:39:53.088 -07 000000610 INF: Z Motor: Moving to -0.168043 mm, started at -0.175013 mm, distance = 6.97 um 17-03-17 23:39:53.088 -07 000000610 INF: FPGA: Xmit ZDACW 36709\n [Z Motor] 17-03-17 23:39:53.088 -07 000000475 INF: FPGA: Recv ZDACW 17-03-17 23:39:53.098 -07 000000610 INF: FPGA: 'ZDACW 36709' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 23:39:53.098 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:39:53.098 -07 000000482 INF: FPGA: Recv ZDACR 36709 17-03-17 23:39:53.108 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:53.108 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:39:53.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:53.258 -07 000000618 INF: FPGA: Recv ZSGSRD 35452 17-03-17 23:39:53.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:39:53.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:53.268 -07 000000438 INF: FPGA: Recv ZSGSRD 35448 17-03-17 23:39:53.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:53.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:53.278 -07 000000512 INF: FPGA: Recv ZSGSRD 35445 17-03-17 23:39:53.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:53.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:53.298 -07 000000618 INF: FPGA: Recv ZSGSRD 35449 17-03-17 23:39:53.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-17 23:39:53.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:53.308 -07 000000438 INF: FPGA: Recv ZSGSRD 35454 17-03-17 23:39:53.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:53.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:53.318 -07 000000512 INF: FPGA: Recv ZSGSRD 35449 17-03-17 23:39:53.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:53.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:53.328 -07 000000561 INF: FPGA: Recv ZSGSRD 35448 17-03-17 23:39:53.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:53.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:53.338 -07 000000482 INF: FPGA: Recv ZSGSRD 35451 17-03-17 23:39:53.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:53.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:53.348 -07 000000618 INF: FPGA: Recv ZSGSRD 35444 17-03-17 23:39:53.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:53.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:53.358 -07 000000438 INF: FPGA: Recv ZSGSRD 35449 17-03-17 23:39:53.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:53.368 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:39:53.368 -07 000000409 INF: FPGA: Recv ZPIEZORD 30923 17-03-17 23:39:53.378 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:53.378 -07 000000610 INF: Z Motor: Piezo is near 46.1 V (nominally 0 to 100 V), expect near 56.0 V, since DAC is at 5.601 V. Piezo Error = -10.0 V. 17-03-17 23:39:53.378 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.0 um, Read 10 ADC samples: Avg = 35449 (-167.2 uncal um), Error = 0.9 uncal um, Median = 35449 (-167.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35444 (-167.2 uncal um), Max = 35454 (-167.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-17 23:39:53.378 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35449, posNoise = 5, negNoise = 5 17-03-17 23:39:53.378 -07 000000610 INF: Z Motor: After move to -0.168043, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:39:53.378 -07 000000610 INF: Z Motor: MoveAbsStepped took 288 ms) 17-03-17 23:39:53.378 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:39:53.378 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:39:53.378 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:39:53.378 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 23:39:53.378 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 23:39:53.378 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 23:39:53.378 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:39:53.378 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:39:53.378 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-17 23:39:53.378 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 23:39:53.378 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:39:53.378 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 23:39:53.388 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-17 23:39:53.388 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 23:39:53.388 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-17 23:39:53.388 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 23:39:53.398 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms. 17-03-17 23:39:53.398 -07 000000627 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms. 17-03-17 23:39:53.398 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms. 17-03-17 23:39:53.398 -07 000000438 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms. 17-03-17 23:39:53.408 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 36885 150\n [Camera] 17-03-17 23:39:53.598 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 23:39:53.608 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 4.016692, 17-03-17 23:39:54.638 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229 17-03-17 23:39:54.638 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229 17-03-17 23:39:54.638 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:39:54.638 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:39:54.638 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start. 17-03-17 23:39:54.648 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229 17-03-17 23:39:54.648 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229 17-03-17 23:39:54.648 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:39:54.648 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:39:54.648 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start. 17-03-17 23:39:54.838 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36885 1422 17-03-17 23:39:54.978 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572 17-03-17 23:39:55.018 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 377 ms. 17-03-17 23:39:55.018 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 378 ms. 17-03-17 23:39:55.018 -07 000000627 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:39:55.028 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:39:55.028 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 389 ms. 17-03-17 23:39:55.028 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms. 17-03-17 23:39:55.028 -07 000000438 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:39:55.028 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms. 17-03-17 23:39:55.038 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:39:55.038 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 393 ms. 17-03-17 23:39:55.488 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072 17-03-17 23:39:55.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072 17-03-17 23:39:55.488 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:39:55.488 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:39:55.488 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start. 17-03-17 23:39:55.488 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072 17-03-17 23:39:55.488 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072 17-03-17 23:39:55.488 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:39:55.488 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:39:55.488 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start. 17-03-17 23:39:55.678 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 2265 17-03-17 23:39:55.678 -07 000000576 INF: FPGA: Recv CAMDBLSNAP 17-03-17 23:39:55.678 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 36885 150' command took 2 ms to send, 2262 ms to get response, and 2272 ms overall 17-03-17 23:39:55.678 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-17 23:39:55.678 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.033203125, Z-Position -0.168055248224419. ------ 17-03-17 23:39:55.678 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:39:55.678 -07 000000486 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17485 mm 17-03-17 23:39:55.678 -07 000000486 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 23:39:55.688 -07 000000618 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:39:55.688 -07 000000459 INF: Z Motor: Entering MoveAbsStepped (DAC = 38196, sync = True, waitForSettling = False) 17-03-17 23:39:55.688 -07 000000459 INF: Z Motor: Moving to -0.174850 mm, started at -0.168055 mm, distance = -6.79 um 17-03-17 23:39:55.688 -07 000000459 INF: FPGA: Xmit ZDACW 38196\n [Z Motor] 17-03-17 23:39:55.688 -07 000000627 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True) 17-03-17 23:39:55.688 -07 000000627 INF: Y Motor: Moving to 69.8726 mm, started at 69.0332 mm, delta = 0.8394 mm 17-03-17 23:39:55.688 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall 17-03-17 23:39:55.688 -07 000000409 INF: FPGA: Recv ZDACW 17-03-17 23:39:55.698 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 23:39:55.698 -07 000000459 INF: FPGA: 'ZDACW 38196' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:39:55.708 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:39:55.708 -07 000000433 INF: FPGA: Recv YRDPOS 141380 17-03-17 23:39:55.718 -07 000000459 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:39:55.718 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall 17-03-17 23:39:55.718 -07 000000627 INF: Y Motor: Encoder = 141380 = motor step 110453.1 = 69.0332 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:39:55.718 -07 000000627 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 23:39:55.718 -07 000000627 INF: Y Motor: Moving 1343 steps-19 17-03-17 23:39:55.718 -07 000000618 INF: FPGA: Recv ZDACR 38196 17-03-17 23:39:55.728 -07 000000459 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-17 23:39:55.728 -07 000000459 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet)) 17-03-17 23:39:55.728 -07 000000627 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 23:39:55.888 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 403 ms. 17-03-17 23:39:55.888 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms. 17-03-17 23:39:55.888 -07 000000541 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:39:55.888 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 402 ms. 17-03-17 23:39:55.888 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms. 17-03-17 23:39:55.888 -07 000000480 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:39:55.898 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:39:55.898 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms. 17-03-17 23:39:55.898 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms. 17-03-17 23:39:55.898 -07 000000448 INF: FPGA: Recv FOCMRRFOC 17-03-17 23:39:55.898 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 209 ms overall 17-03-17 23:39:55.908 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms. 17-03-17 23:39:56.098 -07 000000475 INF: FPGA: Recv YMVTILE 17-03-17 23:39:56.098 -07 000000627 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall 17-03-17 23:39:56.148 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:39:56.148 -07 000000561 INF: FPGA: Recv YRDPOS 143092 17-03-17 23:39:56.158 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:56.158 -07 000000627 INF: Y Motor: Encoder = 143092 = motor step 111790.6 = 69.8691 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:39:56.158 -07 000000627 INF: Y Motor: Position error before settling (table move) = -7 encoder counts (-0.003 mm) 17-03-17 23:39:56.158 -07 000000627 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.839 mm, average velocity = 2.163 mm/sec 17-03-17 23:39:57.088 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:39:57.088 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:39:57.108 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:39:57.108 -07 000000482 INF: FPGA: Recv YRDPOS 143092 17-03-17 23:39:57.118 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:39:57.118 -07 000000627 INF: Y Motor: Encoder = 143092 = motor step 111790.6 = 69.8691 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:39:57.118 -07 000000627 INF: Y Motor: After move to 69.872612, error = -0.003471, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 23:39:57.118 -07 000000627 INF: Y Motor: Position error after settling (table move) = -7 encoder counts (-0.003 mm), Delta during settling = 0 counts (0.000 mm) 17-03-17 23:39:57.118 -07 000000627 INF: Y Motor: Moved to 69.8691 after 1432 ms (table move) 17-03-17 23:39:57.118 -07 000000486 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174850 mm (DAC = 38196) 17-03-17 23:39:57.118 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:57.128 -07 000000502 INF: FPGA: Recv ZSGSRD 36518 17-03-17 23:39:57.128 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall 17-03-17 23:39:57.128 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:57.128 -07 000000438 INF: FPGA: Recv ZSGSRD 36517 17-03-17 23:39:57.138 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:39:57.138 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:57.138 -07 000000618 INF: FPGA: Recv ZSGSRD 36513 17-03-17 23:39:57.148 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:57.148 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:57.148 -07 000000541 INF: FPGA: Recv ZSGSRD 36497 17-03-17 23:39:57.158 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:57.158 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:57.158 -07 000000438 INF: FPGA: Recv ZSGSRD 36504 17-03-17 23:39:57.168 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:57.168 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:57.168 -07 000000475 INF: FPGA: Recv ZSGSRD 36507 17-03-17 23:39:57.178 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:57.178 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:57.178 -07 000000409 INF: FPGA: Recv ZSGSRD 36511 17-03-17 23:39:57.188 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:57.188 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:57.188 -07 000000576 INF: FPGA: Recv ZSGSRD 36513 17-03-17 23:39:57.198 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:57.198 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:57.198 -07 000000502 INF: FPGA: Recv ZSGSRD 36511 17-03-17 23:39:57.208 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:57.208 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:57.208 -07 000000482 INF: FPGA: Recv ZSGSRD 36508 17-03-17 23:39:57.218 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:57.218 -07 000000486 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:39:57.218 -07 000000409 INF: FPGA: Recv ZPIEZORD 32364 17-03-17 23:39:57.228 -07 000000486 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:57.228 -07 000000486 INF: Z Motor: Piezo is near 49.1 V (nominally 0 to 100 V), expect near 58.3 V, since DAC is at 5.828 V. Piezo Error = -9.1 V. 17-03-17 23:39:57.228 -07 000000486 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.9 um, Read 10 ADC samples: Avg = 36510 (-174.0 uncal um), Error = 0.9 uncal um, Median = 36511 (-174.0 uncal um), StdDev = 6 (0.0 uncal um), Range = 21 (0.1 uncal um), Min = 36497 (-173.9 uncal um), Max = 36518 (-174.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 13 (0.1 uncal um) 17-03-17 23:39:57.228 -07 000000486 INF: Z Motor: ADC noise = 13, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36510, posNoise = 8, negNoise = 13 17-03-17 23:39:57.228 -07 000000486 INF: Z Motor: After move to -0.174850, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:39:57.228 -07 000000486 INF: Z Motor: Settle wait time = 1436 ms, measure time = 107 ms (allowed 150 ms), total time = 1543 ms 17-03-17 23:39:57.228 -07 000000486 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms 17-03-17 23:39:57.278 -07 000000486 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1590 ms 17-03-17 23:39:57.278 -07 000000486 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 23:39:57.278 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:39:57.278 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:39:57.278 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:39:57.278 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:39:57.278 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 23:39:57.278 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:39:57.278 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms. 17-03-17 23:39:57.278 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 23:39:57.288 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms. 17-03-17 23:39:57.288 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 23:39:57.288 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms. 17-03-17 23:39:57.288 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms. 17-03-17 23:39:57.298 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:39:57.338 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 23:39:57.638 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-17 23:39:57.638 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-17 23:39:57.638 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 23:39:57.638 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 620385320, 0x0, 559484976) start. 17-03-17 23:39:57.678 -07 000000627 INF: FPGA: Recv @CAMSNAP 381 17-03-17 23:39:57.678 -07 000000448 INF: FPGA: Recv CAMSNAP 17-03-17 23:39:57.678 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 386 ms overall 17-03-17 23:39:57.768 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 620385320, 0x0, 559484976) end. Duration was 126 ms. 17-03-17 23:39:57.768 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:39:57.768 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms. 17-03-17 23:39:57.768 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms. 17-03-17 23:39:57.878 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:39:57.878 -07 000000459 INF: Autofocus start 17-03-17 23:39:57.878 -07 000000459 INF: MeasureProfile start 17-03-17 23:39:57.878 -07 000000438 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:39:57.888 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-17 23:39:57.888 -07 000000475 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 23:39:57.888 -07 000000459 INF: MeasureProfile done 17-03-17 23:39:57.888 -07 000000459 INF: X=-80 Z correction [um]=-0.4885566 17-03-17 23:39:57.888 -07 000000459 INF: Autofocus finished 17-03-17 23:39:58.088 -07 000000561 INF: FPGA: Recv FOCMRRIMG 17-03-17 23:39:58.088 -07 000000475 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 23:39:58.088 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.869140625, Z-position -0.174871337306828. ---------- 17-03-17 23:39:58.088 -07 000000610 INF: Cycle 77 Tile 13 Exposure Settings A 1037 G 500 T 500 C 1037 17-03-17 23:39:58.098 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36602, sync = True, waitForSettling = True) 17-03-17 23:39:58.098 -07 000000610 INF: Z Motor: Moving to -0.167553 mm, started at -0.174871 mm, distance = 7.32 um 17-03-17 23:39:58.098 -07 000000610 INF: FPGA: Xmit ZDACW 36602\n [Z Motor] 17-03-17 23:39:58.098 -07 000000502 INF: FPGA: Recv ZDACW 17-03-17 23:39:58.108 -07 000000610 INF: FPGA: 'ZDACW 36602' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:39:58.108 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:39:58.108 -07 000000409 INF: FPGA: Recv ZDACR 36602 17-03-17 23:39:58.118 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:58.118 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:39:58.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:58.268 -07 000000512 INF: FPGA: Recv ZSGSRD 35375 17-03-17 23:39:58.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:39:58.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:58.278 -07 000000576 INF: FPGA: Recv ZSGSRD 35372 17-03-17 23:39:58.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:58.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:58.288 -07 000000482 INF: FPGA: Recv ZSGSRD 35371 17-03-17 23:39:58.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:58.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:58.298 -07 000000627 INF: FPGA: Recv ZSGSRD 35375 17-03-17 23:39:58.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:58.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:58.308 -07 000000409 INF: FPGA: Recv ZSGSRD 35371 17-03-17 23:39:58.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:58.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:58.318 -07 000000541 INF: FPGA: Recv ZSGSRD 35374 17-03-17 23:39:58.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:58.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:58.328 -07 000000433 INF: FPGA: Recv ZSGSRD 35370 17-03-17 23:39:58.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:58.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:58.338 -07 000000618 INF: FPGA: Recv ZSGSRD 35369 17-03-17 23:39:58.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:58.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:58.348 -07 000000561 INF: FPGA: Recv ZSGSRD 35371 17-03-17 23:39:58.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:58.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:39:58.358 -07 000000448 INF: FPGA: Recv ZSGSRD 35370 17-03-17 23:39:58.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:58.368 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:39:58.368 -07 000000512 INF: FPGA: Recv ZPIEZORD 30830 17-03-17 23:39:58.378 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:39:58.378 -07 000000610 INF: Z Motor: Piezo is near 45.9 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.585 V. Piezo Error = -10.0 V. 17-03-17 23:39:58.378 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.6 um, Read 10 ADC samples: Avg = 35372 (-166.7 uncal um), Error = 0.9 uncal um, Median = 35371 (-166.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35369 (-166.7 uncal um), Max = 35375 (-166.7 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um) 17-03-17 23:39:58.378 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35372, posNoise = 3, negNoise = 3 17-03-17 23:39:58.378 -07 000000610 INF: Z Motor: After move to -0.167553, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:39:58.378 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms) 17-03-17 23:39:58.378 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:39:58.378 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:39:58.378 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:39:58.378 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:39:58.378 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 23:39:58.378 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 23:39:58.378 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 23:39:58.378 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:39:58.378 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-17 23:39:58.378 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 23:39:58.378 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:39:58.378 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 23:39:58.388 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-17 23:39:58.388 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 23:39:58.388 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms. 17-03-17 23:39:58.388 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 23:39:58.398 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms. 17-03-17 23:39:58.398 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms. 17-03-17 23:39:58.398 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms. 17-03-17 23:39:58.398 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms. 17-03-17 23:39:58.408 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 36779 150\n [Camera] 17-03-17 23:39:58.608 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 23:39:58.978 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 4.02213, 17-03-17 23:39:59.638 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229 17-03-17 23:39:59.638 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229 17-03-17 23:39:59.648 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229 17-03-17 23:39:59.648 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:39:59.648 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:39:59.648 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start. 17-03-17 23:39:59.648 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229 17-03-17 23:39:59.648 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:39:59.648 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:39:59.648 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start. 17-03-17 23:39:59.838 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36779 1422 17-03-17 23:39:59.988 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572 17-03-17 23:40:00.048 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 399 ms. 17-03-17 23:40:00.048 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms. 17-03-17 23:40:00.048 -07 000000448 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:40:00.048 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 398 ms. 17-03-17 23:40:00.048 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms. 17-03-17 23:40:00.048 -07 000000482 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:40:00.048 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:40:00.048 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms. 17-03-17 23:40:00.048 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:40:00.058 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms. 17-03-17 23:40:00.488 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072 17-03-17 23:40:00.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072 17-03-17 23:40:00.488 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:40:00.488 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:40:00.488 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start. 17-03-17 23:40:00.488 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072 17-03-17 23:40:00.488 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072 17-03-17 23:40:00.488 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:40:00.488 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:40:00.488 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start. 17-03-17 23:40:00.678 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 2265 17-03-17 23:40:00.678 -07 000000482 INF: FPGA: Recv CAMDBLSNAP 17-03-17 23:40:00.678 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 36779 150' command took 2 ms to send, 2263 ms to get response, and 2272 ms overall 17-03-17 23:40:00.678 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-17 23:40:00.678 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.869140625, Z-Position -0.167560583889504. ------ 17-03-17 23:40:00.678 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:40:00.678 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17436 mm 17-03-17 23:40:00.688 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 23:40:00.688 -07 000000547 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:40:00.688 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 1 ms to get response, and 3 ms overall 17-03-17 23:40:00.688 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 23:40:00.688 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True) 17-03-17 23:40:00.688 -07 000000502 INF: Y Motor: Moving to 70.7026 mm, started at 69.8691 mm, delta = 0.8335 mm 17-03-17 23:40:00.688 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 38089, sync = True, waitForSettling = False) 17-03-17 23:40:00.688 -07 000000561 INF: Z Motor: Moving to -0.174360 mm, started at -0.167561 mm, distance = -6.80 um 17-03-17 23:40:00.698 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:40:00.698 -07 000000627 INF: FPGA: Recv YRDPOS 143093 17-03-17 23:40:00.708 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall 17-03-17 23:40:00.708 -07 000000561 INF: FPGA: Xmit ZDACW 38089\n [Z Motor] 17-03-17 23:40:00.708 -07 000000502 INF: Y Motor: Encoder = 143093 = motor step 111791.4 = 69.8696 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:40:00.708 -07 000000448 INF: FPGA: Recv ZDACW 17-03-17 23:40:00.708 -07 000000502 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 23:40:00.708 -07 000000502 INF: Y Motor: Moving 1333 steps-7 17-03-17 23:40:00.718 -07 000000561 INF: FPGA: 'ZDACW 38089' command took 0 ms to send, 0 ms to get response, and 25 ms overall 17-03-17 23:40:00.718 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:40:00.718 -07 000000512 INF: FPGA: Recv ZDACR 38089 17-03-17 23:40:00.728 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 23:40:00.728 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:00.728 -07 000000561 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet)) 17-03-17 23:40:00.878 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 391 ms. 17-03-17 23:40:00.878 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms. 17-03-17 23:40:00.878 -07 000000409 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:40:00.888 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:40:00.888 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 398 ms. 17-03-17 23:40:00.888 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms. 17-03-17 23:40:00.888 -07 000000438 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:40:00.888 -07 000000547 INF: FPGA: Recv FOCMRRFOC 17-03-17 23:40:00.888 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall 17-03-17 23:40:00.888 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms. 17-03-17 23:40:00.898 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 9 ms. 17-03-17 23:40:00.898 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms. 17-03-17 23:40:01.098 -07 000000475 INF: FPGA: Recv YMVTILE 17-03-17 23:40:01.098 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall 17-03-17 23:40:01.138 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:40:01.138 -07 000000541 INF: FPGA: Recv YRDPOS 144781 17-03-17 23:40:01.148 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:40:01.148 -07 000000502 INF: Y Motor: Encoder = 144781 = motor step 113110.2 = 70.6938 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:40:01.148 -07 000000502 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm) 17-03-17 23:40:01.148 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.833 mm, average velocity = 2.115 mm/sec 17-03-17 23:40:02.088 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:40:02.088 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:40:02.098 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:40:02.098 -07 000000480 INF: FPGA: Recv YRDPOS 144781 17-03-17 23:40:02.108 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:40:02.108 -07 000000502 INF: Y Motor: Encoder = 144781 = motor step 113110.2 = 70.6938 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:40:02.128 -07 000000502 INF: Y Motor: After move to 70.702606, error = -0.008759, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 23:40:02.128 -07 000000502 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm) 17-03-17 23:40:02.128 -07 000000502 INF: Y Motor: Moved to 70.6938 after 1442 ms (table move) 17-03-17 23:40:02.138 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174360 mm (DAC = 38089) 17-03-17 23:40:02.138 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:02.138 -07 000000547 INF: FPGA: Recv ZSGSRD 36432 17-03-17 23:40:02.148 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:02.148 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:02.148 -07 000000618 INF: FPGA: Recv ZSGSRD 36434 17-03-17 23:40:02.158 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:02.158 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:02.158 -07 000000433 INF: FPGA: Recv ZSGSRD 36433 17-03-17 23:40:02.168 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:02.168 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:02.168 -07 000000502 INF: FPGA: Recv ZSGSRD 36430 17-03-17 23:40:02.178 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:02.178 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:02.178 -07 000000547 INF: FPGA: Recv ZSGSRD 36431 17-03-17 23:40:02.188 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:02.188 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:02.188 -07 000000512 INF: FPGA: Recv ZSGSRD 36427 17-03-17 23:40:02.198 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:02.198 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:02.198 -07 000000627 INF: FPGA: Recv ZSGSRD 36430 17-03-17 23:40:02.208 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:02.208 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:02.208 -07 000000438 INF: FPGA: Recv ZSGSRD 36433 17-03-17 23:40:02.218 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:02.218 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:02.218 -07 000000561 INF: FPGA: Recv ZSGSRD 36431 17-03-17 23:40:02.228 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:02.228 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:02.228 -07 000000433 INF: FPGA: Recv ZSGSRD 36437 17-03-17 23:40:02.238 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:02.238 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:40:02.238 -07 000000627 INF: FPGA: Recv ZPIEZORD 32199 17-03-17 23:40:02.248 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:02.248 -07 000000576 INF: Z Motor: Piezo is near 48.8 V (nominally 0 to 100 V), expect near 58.1 V, since DAC is at 5.812 V. Piezo Error = -9.3 V. 17-03-17 23:40:02.248 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.4 um, Read 10 ADC samples: Avg = 36432 (-173.5 uncal um), Error = 0.9 uncal um, Median = 36432 (-173.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36427 (-173.5 uncal um), Max = 36437 (-173.5 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-17 23:40:02.248 -07 000000576 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36432, posNoise = 5, negNoise = 5 17-03-17 23:40:02.248 -07 000000576 INF: Z Motor: After move to -0.174360, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:40:02.248 -07 000000576 INF: Z Motor: Settle wait time = 1445 ms, measure time = 111 ms (allowed 150 ms), total time = 1556 ms 17-03-17 23:40:02.248 -07 000000576 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms 17-03-17 23:40:02.288 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1601 ms 17-03-17 23:40:02.288 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 23:40:02.288 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:40:02.288 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:40:02.288 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:40:02.288 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:40:02.288 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 23:40:02.288 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:40:02.288 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:40:02.288 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 23:40:02.298 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-17 23:40:02.298 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 23:40:02.308 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms. 17-03-17 23:40:02.308 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms. 17-03-17 23:40:02.308 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:40:02.358 -07 000000433 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 23:40:02.648 -07 000000486 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-17 23:40:02.648 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-17 23:40:02.658 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 23:40:02.658 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2807500560, 0x0, 559484976) start. 17-03-17 23:40:02.688 -07 000000433 INF: FPGA: Recv @CAMSNAP 380 17-03-17 23:40:02.688 -07 000000482 INF: FPGA: Recv CAMSNAP 17-03-17 23:40:02.698 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall 17-03-17 23:40:02.778 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2807500560, 0x0, 559484976) end. Duration was 126 ms. 17-03-17 23:40:02.778 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:40:02.778 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms. 17-03-17 23:40:02.778 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms. 17-03-17 23:40:02.798 -07 000000448 INF: Autofocus start 17-03-17 23:40:02.798 -07 000000448 INF: MeasureProfile start 17-03-17 23:40:02.798 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:40:02.798 -07 000000541 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:40:02.808 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-17 23:40:02.808 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 23:40:02.808 -07 000000448 INF: MeasureProfile done 17-03-17 23:40:02.808 -07 000000448 INF: X=-64 Z correction [um]=-0.4038377 17-03-17 23:40:02.808 -07 000000448 INF: Autofocus finished 17-03-17 23:40:03.008 -07 000000482 INF: FPGA: Recv FOCMRRIMG 17-03-17 23:40:03.008 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 23:40:03.008 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.69384765625, Z-position -0.17437024875977. ---------- 17-03-17 23:40:03.008 -07 000000610 INF: Cycle 77 Tile 14 Exposure Settings A 1037 G 500 T 500 C 1037 17-03-17 23:40:03.018 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36514, sync = True, waitForSettling = True) 17-03-17 23:40:03.018 -07 000000610 INF: Z Motor: Moving to -0.167150 mm, started at -0.174370 mm, distance = 7.22 um 17-03-17 23:40:03.018 -07 000000610 INF: FPGA: Xmit ZDACW 36514\n [Z Motor] 17-03-17 23:40:03.018 -07 000000512 INF: FPGA: Recv ZDACW 17-03-17 23:40:03.028 -07 000000610 INF: FPGA: 'ZDACW 36514' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:40:03.028 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:40:03.028 -07 000000409 INF: FPGA: Recv ZDACR 36514 17-03-17 23:40:03.038 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:03.038 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:40:03.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:03.188 -07 000000482 INF: FPGA: Recv ZSGSRD 35309 17-03-17 23:40:03.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:40:03.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:03.198 -07 000000561 INF: FPGA: Recv ZSGSRD 35317 17-03-17 23:40:03.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:03.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:03.208 -07 000000459 INF: FPGA: Recv ZSGSRD 35309 17-03-17 23:40:03.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:03.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:03.218 -07 000000576 INF: FPGA: Recv ZSGSRD 35302 17-03-17 23:40:03.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:03.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:03.238 -07 000000618 INF: FPGA: Recv ZSGSRD 35306 17-03-17 23:40:03.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 3 ms to send, 1 ms to get response, and 9 ms overall 17-03-17 23:40:03.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:03.238 -07 000000541 INF: FPGA: Recv ZSGSRD 35313 17-03-17 23:40:03.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:40:03.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:03.248 -07 000000482 INF: FPGA: Recv ZSGSRD 35311 17-03-17 23:40:03.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:03.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:03.258 -07 000000486 INF: FPGA: Recv ZSGSRD 35306 17-03-17 23:40:03.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:03.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:03.268 -07 000000433 INF: FPGA: Recv ZSGSRD 35309 17-03-17 23:40:03.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:03.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:03.278 -07 000000475 INF: FPGA: Recv ZSGSRD 35309 17-03-17 23:40:03.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:03.288 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:40:03.288 -07 000000576 INF: FPGA: Recv ZPIEZORD 30712 17-03-17 23:40:03.298 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:03.298 -07 000000610 INF: Z Motor: Piezo is near 45.6 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.572 V. Piezo Error = -10.1 V. 17-03-17 23:40:03.298 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.2 um, Read 10 ADC samples: Avg = 35309 (-166.3 uncal um), Error = 0.9 uncal um, Median = 35309 (-166.3 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35302 (-166.2 uncal um), Max = 35317 (-166.3 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um) 17-03-17 23:40:03.298 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35309, posNoise = 8, negNoise = 7 17-03-17 23:40:03.298 -07 000000610 INF: Z Motor: After move to -0.167150, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:40:03.298 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms) 17-03-17 23:40:03.298 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:40:03.298 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:40:03.298 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:40:03.298 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:40:03.298 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 23:40:03.298 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 23:40:03.298 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 23:40:03.298 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:40:03.298 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-17 23:40:03.298 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 23:40:03.298 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:40:03.308 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 23:40:03.308 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms. 17-03-17 23:40:03.308 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 23:40:03.308 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms. 17-03-17 23:40:03.308 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 23:40:03.318 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms. 17-03-17 23:40:03.318 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms. 17-03-17 23:40:03.318 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms. 17-03-17 23:40:03.318 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms. 17-03-17 23:40:03.328 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 36690 150\n [Camera] 17-03-17 23:40:03.528 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 23:40:04.358 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 4.009895, 17-03-17 23:40:04.568 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229 17-03-17 23:40:04.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229 17-03-17 23:40:04.568 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:40:04.568 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:40:04.568 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) start. 17-03-17 23:40:04.568 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229 17-03-17 23:40:04.568 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229 17-03-17 23:40:04.568 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:40:04.568 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:40:04.568 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) start. 17-03-17 23:40:04.758 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36690 1422 17-03-17 23:40:04.908 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572 17-03-17 23:40:04.968 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2415923248, 0x0, 391868352) end. Duration was 399 ms. 17-03-17 23:40:04.968 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms. 17-03-17 23:40:04.968 -07 000000459 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:40:04.968 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2451345512, 0x0, 418435064) end. Duration was 400 ms. 17-03-17 23:40:04.968 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms. 17-03-17 23:40:04.968 -07 000000448 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:40:04.968 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:40:04.968 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms. 17-03-17 23:40:04.978 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:40:04.978 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms. 17-03-17 23:40:05.408 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072 17-03-17 23:40:05.408 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072 17-03-17 23:40:05.408 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:40:05.408 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:40:05.408 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) start. 17-03-17 23:40:05.408 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072 17-03-17 23:40:05.408 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072 17-03-17 23:40:05.408 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:40:05.408 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:40:05.408 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) start. 17-03-17 23:40:05.598 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 2265 17-03-17 23:40:05.598 -07 000000433 INF: FPGA: Recv CAMDBLSNAP 17-03-17 23:40:05.598 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 36690 150' command took 2 ms to send, 2266 ms to get response, and 2275 ms overall 17-03-17 23:40:05.598 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-17 23:40:05.598 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.69384765625, Z-Position -0.167155858524573. ------ 17-03-17 23:40:05.608 -07 000000627 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17396 mm 17-03-17 23:40:05.608 -07 000000627 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 23:40:05.608 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:40:05.608 -07 000000482 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:40:05.608 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True) 17-03-17 23:40:05.608 -07 000000480 INF: Y Motor: Moving to 71.5326 mm, started at 70.6938 mm, delta = 0.8388 mm 17-03-17 23:40:05.608 -07 000000448 INF: Z Motor: Entering MoveAbsStepped (DAC = 38001, sync = True, waitForSettling = False) 17-03-17 23:40:05.608 -07 000000448 INF: Z Motor: Moving to -0.173957 mm, started at -0.167156 mm, distance = -6.80 um 17-03-17 23:40:05.618 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:40:05.618 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:40:05.618 -07 000000502 INF: FPGA: Recv YRDPOS 144782 17-03-17 23:40:05.628 -07 000000448 INF: FPGA: Xmit ZDACW 38001\n [Z Motor] 17-03-17 23:40:05.628 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall 17-03-17 23:40:05.628 -07 000000480 INF: Y Motor: Encoder = 144782 = motor step 113110.9 = 70.6943 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:40:05.628 -07 000000438 INF: FPGA: Recv ZDACW 17-03-17 23:40:05.628 -07 000000480 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 23:40:05.628 -07 000000480 INF: Y Motor: Moving 1341 steps-18 17-03-17 23:40:05.638 -07 000000547 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 23:40:05.638 -07 000000448 INF: FPGA: 'ZDACW 38001' command took 0 ms to send, 0 ms to get response, and 22 ms overall 17-03-17 23:40:05.648 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 23:40:05.658 -07 000000448 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:40:05.658 -07 000000512 INF: FPGA: Recv ZDACR 38001 17-03-17 23:40:05.668 -07 000000448 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-17 23:40:05.668 -07 000000448 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet)) 17-03-17 23:40:05.808 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2486767776, 0x0, 391868352) end. Duration was 401 ms. 17-03-17 23:40:05.808 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms. 17-03-17 23:40:05.808 -07 000000618 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:40:05.808 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2550140976, 0x0, 418435064) end. Duration was 399 ms. 17-03-17 23:40:05.808 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms. 17-03-17 23:40:05.808 -07 000000576 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:40:05.818 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:40:05.818 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms. 17-03-17 23:40:05.818 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms. 17-03-17 23:40:05.818 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms. 17-03-17 23:40:05.838 -07 000000409 INF: FPGA: Recv FOCMRRFOC 17-03-17 23:40:05.838 -07 000000547 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall 17-03-17 23:40:06.018 -07 000000502 INF: FPGA: Recv YMVTILE 17-03-17 23:40:06.018 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall 17-03-17 23:40:06.058 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:40:06.068 -07 000000475 INF: FPGA: Recv YRDPOS 146483 17-03-17 23:40:06.068 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall 17-03-17 23:40:06.068 -07 000000480 INF: Y Motor: Encoder = 146483 = motor step 114439.8 = 71.5249 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:40:06.068 -07 000000480 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm) 17-03-17 23:40:06.068 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.839 mm, average velocity = 2.129 mm/sec 17-03-17 23:40:07.018 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:40:07.018 -07 000000618 INF: FPGA: Recv YRDPOS 146484 17-03-17 23:40:07.028 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:40:07.028 -07 000000480 INF: Y Motor: Encoder = 146484 = motor step 114440.6 = 71.5254 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:40:07.048 -07 000000480 INF: Y Motor: After move to 71.532608, error = -0.007217, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 23:40:07.048 -07 000000480 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 1 counts (0.000 mm) 17-03-17 23:40:07.048 -07 000000480 INF: Y Motor: Moved to 71.5254 after 1435 ms (table move) 17-03-17 23:40:07.048 -07 000000627 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173957 mm (DAC = 38001) 17-03-17 23:40:07.048 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:07.058 -07 000000547 INF: FPGA: Recv ZSGSRD 36367 17-03-17 23:40:07.058 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall 17-03-17 23:40:07.058 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:07.058 -07 000000459 INF: FPGA: Recv ZSGSRD 36377 17-03-17 23:40:07.068 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:40:07.068 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:07.068 -07 000000512 INF: FPGA: Recv ZSGSRD 36376 17-03-17 23:40:07.078 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:07.078 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:07.078 -07 000000475 INF: FPGA: Recv ZSGSRD 36362 17-03-17 23:40:07.088 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:07.088 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:07.088 -07 000000541 INF: FPGA: Recv ZSGSRD 36367 17-03-17 23:40:07.088 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:40:07.088 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:40:07.098 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:07.098 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:07.098 -07 000000512 INF: FPGA: Recv ZSGSRD 36363 17-03-17 23:40:07.108 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:07.108 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:07.108 -07 000000448 INF: FPGA: Recv ZSGSRD 36364 17-03-17 23:40:07.118 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:07.118 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:07.118 -07 000000433 INF: FPGA: Recv ZSGSRD 36370 17-03-17 23:40:07.128 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:07.128 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:07.128 -07 000000438 INF: FPGA: Recv ZSGSRD 36369 17-03-17 23:40:07.138 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:07.138 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:07.138 -07 000000618 INF: FPGA: Recv ZSGSRD 36374 17-03-17 23:40:07.148 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:07.148 -07 000000627 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:40:07.148 -07 000000480 INF: FPGA: Recv ZPIEZORD 32193 17-03-17 23:40:07.158 -07 000000627 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:07.158 -07 000000627 INF: Z Motor: Piezo is near 48.8 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.799 V. Piezo Error = -9.2 V. 17-03-17 23:40:07.158 -07 000000627 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.0 um, Read 10 ADC samples: Avg = 36369 (-173.1 uncal um), Error = 0.9 uncal um, Median = 36368 (-173.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36362 (-173.0 uncal um), Max = 36377 (-173.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um) 17-03-17 23:40:07.158 -07 000000627 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36369, posNoise = 8, negNoise = 7 17-03-17 23:40:07.158 -07 000000627 INF: Z Motor: After move to -0.173957, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:40:07.158 -07 000000627 INF: Z Motor: Settle wait time = 1440 ms, measure time = 103 ms (allowed 150 ms), total time = 1543 ms 17-03-17 23:40:07.158 -07 000000627 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms 17-03-17 23:40:07.208 -07 000000627 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1597 ms 17-03-17 23:40:07.208 -07 000000627 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 23:40:07.208 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:40:07.208 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:40:07.208 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:40:07.208 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 23:40:07.208 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:40:07.208 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:40:07.208 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-17 23:40:07.208 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 23:40:07.218 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-17 23:40:07.218 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 23:40:07.218 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms. 17-03-17 23:40:07.218 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms. 17-03-17 23:40:07.228 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:40:07.268 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 23:40:07.568 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-17 23:40:07.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-17 23:40:07.568 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 23:40:07.568 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2253754584, 0x0, 559484976) start. 17-03-17 23:40:07.608 -07 000000438 INF: FPGA: Recv @CAMSNAP 380 17-03-17 23:40:07.608 -07 000000475 INF: FPGA: Recv CAMSNAP 17-03-17 23:40:07.608 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall 17-03-17 23:40:07.698 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2253754584, 0x0, 559484976) end. Duration was 125 ms. 17-03-17 23:40:07.698 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:40:07.698 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms. 17-03-17 23:40:07.698 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms. 17-03-17 23:40:07.708 -07 000000486 INF: Autofocus start 17-03-17 23:40:07.708 -07 000000486 INF: MeasureProfile start 17-03-17 23:40:07.708 -07 000000409 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:40:07.708 -07 000000576 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:40:07.718 -07 000000409 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-17 23:40:07.718 -07 000000409 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 23:40:07.718 -07 000000486 INF: MeasureProfile done 17-03-17 23:40:07.718 -07 000000486 INF: X=16 Z correction [um]=0.01042744 17-03-17 23:40:07.718 -07 000000486 INF: Autofocus finished 17-03-17 23:40:07.918 -07 000000438 INF: FPGA: Recv FOCMRRIMG 17-03-17 23:40:07.918 -07 000000409 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 23:40:07.918 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.525390625, Z-position -0.173965523394839. ---------- 17-03-17 23:40:07.918 -07 000000610 INF: Cycle 77 Tile 15 Exposure Settings A 1037 G 500 T 500 C 1037 17-03-17 23:40:07.928 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36516, sync = True, waitForSettling = True) 17-03-17 23:40:07.928 -07 000000610 INF: Z Motor: Moving to -0.167160 mm, started at -0.173966 mm, distance = 6.81 um 17-03-17 23:40:07.928 -07 000000610 INF: FPGA: Xmit ZDACW 36516\n [Z Motor] 17-03-17 23:40:07.928 -07 000000561 INF: FPGA: Recv ZDACW 17-03-17 23:40:07.938 -07 000000610 INF: FPGA: 'ZDACW 36516' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:40:07.938 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:40:07.938 -07 000000459 INF: FPGA: Recv ZDACR 36516 17-03-17 23:40:07.948 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:07.948 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:40:08.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:08.098 -07 000000482 INF: FPGA: Recv ZSGSRD 35311 17-03-17 23:40:08.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:40:08.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:08.108 -07 000000486 INF: FPGA: Recv ZSGSRD 35307 17-03-17 23:40:08.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:08.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:08.118 -07 000000618 INF: FPGA: Recv ZSGSRD 35310 17-03-17 23:40:08.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:08.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:08.128 -07 000000541 INF: FPGA: Recv ZSGSRD 35312 17-03-17 23:40:08.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:08.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:08.138 -07 000000433 INF: FPGA: Recv ZSGSRD 35313 17-03-17 23:40:08.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:08.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:08.148 -07 000000482 INF: FPGA: Recv ZSGSRD 35313 17-03-17 23:40:08.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:08.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:08.158 -07 000000486 INF: FPGA: Recv ZSGSRD 35308 17-03-17 23:40:08.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:08.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:08.168 -07 000000618 INF: FPGA: Recv ZSGSRD 35313 17-03-17 23:40:08.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:08.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:08.178 -07 000000547 INF: FPGA: Recv ZSGSRD 35313 17-03-17 23:40:08.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:08.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:08.188 -07 000000459 INF: FPGA: Recv ZSGSRD 35308 17-03-17 23:40:08.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:08.198 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:40:08.198 -07 000000502 INF: FPGA: Recv ZPIEZORD 30760 17-03-17 23:40:08.208 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:08.208 -07 000000610 INF: Z Motor: Piezo is near 45.7 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.572 V. Piezo Error = -10.0 V. 17-03-17 23:40:08.208 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.2 um, Read 10 ADC samples: Avg = 35311 (-166.3 uncal um), Error = 0.9 uncal um, Median = 35312 (-166.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35307 (-166.3 uncal um), Max = 35313 (-166.3 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um) 17-03-17 23:40:08.208 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35311, posNoise = 2, negNoise = 4 17-03-17 23:40:08.208 -07 000000610 INF: Z Motor: After move to -0.167160, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:40:08.208 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms) 17-03-17 23:40:08.208 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:40:08.208 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:40:08.208 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:40:08.208 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 23:40:08.208 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 23:40:08.208 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 23:40:08.208 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:40:08.208 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:40:08.208 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms. 17-03-17 23:40:08.208 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 23:40:08.208 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms. 17-03-17 23:40:08.208 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 23:40:08.218 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms. 17-03-17 23:40:08.218 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 23:40:08.218 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-17 23:40:08.218 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 23:40:08.228 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms. 17-03-17 23:40:08.228 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms. 17-03-17 23:40:08.228 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms. 17-03-17 23:40:08.228 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms. 17-03-17 23:40:08.238 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 36693 150\n [Camera] 17-03-17 23:40:08.438 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 195 17-03-17 23:40:09.468 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229 17-03-17 23:40:09.468 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229 17-03-17 23:40:09.468 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:40:09.468 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:40:09.468 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) start. 17-03-17 23:40:09.478 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229 17-03-17 23:40:09.478 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229 17-03-17 23:40:09.478 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:40:09.478 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:40:09.478 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) start. 17-03-17 23:40:09.668 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36693 1422 17-03-17 23:40:09.718 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 3.981281, 17-03-17 23:40:09.808 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572 17-03-17 23:40:09.868 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2585563240, 0x0, 391868352) end. Duration was 399 ms. 17-03-17 23:40:09.868 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms. 17-03-17 23:40:09.868 -07 000000618 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:40:09.878 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:40:09.878 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms. 17-03-17 23:40:09.878 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2620985504, 0x0, 418435064) end. Duration was 399 ms. 17-03-17 23:40:09.878 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms. 17-03-17 23:40:09.878 -07 000000512 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:40:09.878 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:40:09.888 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms. 17-03-17 23:40:10.318 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072 17-03-17 23:40:10.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072 17-03-17 23:40:10.318 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:40:10.458 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072 17-03-17 23:40:10.458 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072 17-03-17 23:40:10.458 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:40:10.458 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:40:10.458 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) start. 17-03-17 23:40:10.468 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:40:10.468 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start. 17-03-17 23:40:10.508 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 2265 17-03-17 23:40:10.508 -07 000000618 INF: FPGA: Recv CAMDBLSNAP 17-03-17 23:40:10.508 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 36693 150' command took 2 ms to send, 2262 ms to get response, and 2272 ms overall 17-03-17 23:40:10.508 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-17 23:40:10.508 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.525390625, Z-Position -0.167168706948856. ------ 17-03-17 23:40:10.508 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:40:10.508 -07 000000409 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17397 mm 17-03-17 23:40:10.508 -07 000000409 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 23:40:10.508 -07 000000547 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True) 17-03-17 23:40:10.508 -07 000000547 INF: Y Motor: Moving to 72.3626 mm, started at 71.5254 mm, delta = 0.8372 mm 17-03-17 23:40:10.518 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:40:10.518 -07 000000618 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:40:10.518 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-17 23:40:10.518 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 38003, sync = True, waitForSettling = False) 17-03-17 23:40:10.518 -07 000000512 INF: Z Motor: Moving to -0.173967 mm, started at -0.167169 mm, distance = -6.80 um 17-03-17 23:40:10.518 -07 000000561 INF: FPGA: Recv YRDPOS 146484 17-03-17 23:40:10.528 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:40:10.528 -07 000000547 INF: Y Motor: Encoder = 146484 = motor step 114440.6 = 71.5254 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:40:10.528 -07 000000547 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 23:40:10.528 -07 000000547 INF: Y Motor: Moving 1340 steps-16 17-03-17 23:40:10.528 -07 000000512 INF: FPGA: Xmit ZDACW 38003\n [Z Motor] 17-03-17 23:40:10.528 -07 000000482 INF: FPGA: Recv ZDACW 17-03-17 23:40:10.538 -07 000000623 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 23:40:10.538 -07 000000512 INF: FPGA: 'ZDACW 38003' command took 1 ms to send, 0 ms to get response, and 18 ms overall 17-03-17 23:40:10.548 -07 000000547 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 23:40:10.558 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:40:10.558 -07 000000502 INF: FPGA: Recv ZDACR 38003 17-03-17 23:40:10.568 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-17 23:40:10.568 -07 000000512 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet)) 17-03-17 23:40:10.738 -07 000000438 INF: FPGA: Recv FOCMRRFOC 17-03-17 23:40:10.738 -07 000000623 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall 17-03-17 23:40:10.848 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 378 ms. 17-03-17 23:40:10.848 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms. 17-03-17 23:40:10.848 -07 000000433 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:40:10.848 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:40:10.858 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2818576432, 0x0, 391868352) end. Duration was 391 ms. 17-03-17 23:40:10.858 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms. 17-03-17 23:40:10.858 -07 000000480 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:40:10.858 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:40:10.858 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 543 ms. 17-03-17 23:40:10.858 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 397 ms. 17-03-17 23:40:10.918 -07 000000627 INF: FPGA: Recv YMVTILE 17-03-17 23:40:10.918 -07 000000547 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall 17-03-17 23:40:10.958 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:40:10.968 -07 000000627 INF: FPGA: Recv YRDPOS 148184 17-03-17 23:40:10.978 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:40:10.978 -07 000000547 INF: Y Motor: Encoder = 148184 = motor step 115768.8 = 72.3555 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:40:10.978 -07 000000547 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm) 17-03-17 23:40:10.978 -07 000000547 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.837 mm, average velocity = 2.109 mm/sec 17-03-17 23:40:11.928 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:40:11.928 -07 000000448 INF: FPGA: Recv YRDPOS 148184 17-03-17 23:40:11.938 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:11.938 -07 000000547 INF: Y Motor: Encoder = 148184 = motor step 115768.8 = 72.3555 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:40:11.968 -07 000000547 INF: Y Motor: After move to 72.362610, error = -0.007141, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 23:40:11.968 -07 000000547 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm) 17-03-17 23:40:11.968 -07 000000547 INF: Y Motor: Moved to 72.3555 after 1451 ms (table move) 17-03-17 23:40:11.968 -07 000000409 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173967 mm (DAC = 38003) 17-03-17 23:40:11.968 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:11.968 -07 000000486 INF: FPGA: Recv ZSGSRD 36375 17-03-17 23:40:11.978 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-17 23:40:11.978 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:11.978 -07 000000576 INF: FPGA: Recv ZSGSRD 36368 17-03-17 23:40:11.988 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:11.988 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:11.988 -07 000000475 INF: FPGA: Recv ZSGSRD 36364 17-03-17 23:40:11.998 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:11.998 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:11.998 -07 000000459 INF: FPGA: Recv ZSGSRD 36365 17-03-17 23:40:12.008 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:12.008 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:12.008 -07 000000623 INF: FPGA: Recv ZSGSRD 36368 17-03-17 23:40:12.018 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:12.018 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:12.018 -07 000000512 INF: FPGA: Recv ZSGSRD 36371 17-03-17 23:40:12.028 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:12.028 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:12.028 -07 000000438 INF: FPGA: Recv ZSGSRD 36369 17-03-17 23:40:12.038 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:12.038 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:12.038 -07 000000459 INF: FPGA: Recv ZSGSRD 36375 17-03-17 23:40:12.048 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:12.048 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:12.048 -07 000000618 INF: FPGA: Recv ZSGSRD 36370 17-03-17 23:40:12.058 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:40:12.058 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:12.058 -07 000000561 INF: FPGA: Recv ZSGSRD 36372 17-03-17 23:40:12.068 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:12.068 -07 000000409 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:40:12.068 -07 000000433 INF: FPGA: Recv ZPIEZORD 32194 17-03-17 23:40:12.078 -07 000000409 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:12.078 -07 000000409 INF: Z Motor: Piezo is near 48.8 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.799 V. Piezo Error = -9.2 V. 17-03-17 23:40:12.078 -07 000000409 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.0 um, Read 10 ADC samples: Avg = 36370 (-173.1 uncal um), Error = 0.9 uncal um, Median = 36370 (-173.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36364 (-173.0 uncal um), Max = 36375 (-173.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um) 17-03-17 23:40:12.078 -07 000000409 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36370, posNoise = 5, negNoise = 6 17-03-17 23:40:12.078 -07 000000409 INF: Z Motor: After move to -0.173967, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:40:12.078 -07 000000409 INF: Z Motor: Settle wait time = 1455 ms, measure time = 104 ms (allowed 150 ms), total time = 1559 ms 17-03-17 23:40:12.078 -07 000000409 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms 17-03-17 23:40:12.088 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:40:12.088 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:40:12.128 -07 000000409 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1612 ms 17-03-17 23:40:12.128 -07 000000409 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 23:40:12.128 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:40:12.128 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:40:12.128 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:40:12.128 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:40:12.128 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 23:40:12.128 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:40:12.128 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:40:12.128 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 23:40:12.138 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-17 23:40:12.138 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 23:40:12.138 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms. 17-03-17 23:40:12.138 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms. 17-03-17 23:40:12.148 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:40:12.188 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 23:40:12.488 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-17 23:40:12.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-17 23:40:12.488 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 23:40:12.488 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2182910056, 0x0, 559484976) start. 17-03-17 23:40:12.528 -07 000000482 INF: FPGA: Recv @CAMSNAP 380 17-03-17 23:40:12.528 -07 000000459 INF: FPGA: Recv CAMSNAP 17-03-17 23:40:12.528 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall 17-03-17 23:40:12.618 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2182910056, 0x0, 559484976) end. Duration was 124 ms. 17-03-17 23:40:12.618 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:40:12.618 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-17 23:40:12.618 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 127 ms. 17-03-17 23:40:12.628 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:40:12.628 -07 000000480 INF: Autofocus start 17-03-17 23:40:12.628 -07 000000480 INF: MeasureProfile start 17-03-17 23:40:12.628 -07 000000512 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:40:12.638 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 23:40:12.638 -07 000000623 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 23:40:12.638 -07 000000480 INF: MeasureProfile done 17-03-17 23:40:12.638 -07 000000480 INF: X=-80 Z correction [um]=-0.4885566 17-03-17 23:40:12.638 -07 000000480 INF: Autofocus finished 17-03-17 23:40:12.838 -07 000000512 INF: FPGA: Recv FOCMRRIMG 17-03-17 23:40:12.838 -07 000000623 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 23:40:12.838 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.35546875, Z-position -0.173971947606981. ---------- 17-03-17 23:40:12.838 -07 000000610 INF: Cycle 77 Tile 16 Exposure Settings A 1037 G 500 T 500 C 1037 17-03-17 23:40:12.848 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36409, sync = True, waitForSettling = True) 17-03-17 23:40:12.848 -07 000000610 INF: Z Motor: Moving to -0.166670 mm, started at -0.173972 mm, distance = 7.30 um 17-03-17 23:40:12.848 -07 000000610 INF: FPGA: Xmit ZDACW 36409\n [Z Motor] 17-03-17 23:40:12.848 -07 000000561 INF: FPGA: Recv ZDACW 17-03-17 23:40:12.858 -07 000000610 INF: FPGA: 'ZDACW 36409' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:12.858 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:40:12.858 -07 000000433 INF: FPGA: Recv ZDACR 36409 17-03-17 23:40:12.868 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:12.868 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:40:13.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:13.018 -07 000000475 INF: FPGA: Recv ZSGSRD 35235 17-03-17 23:40:13.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:40:13.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:13.028 -07 000000502 INF: FPGA: Recv ZSGSRD 35236 17-03-17 23:40:13.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:13.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:13.038 -07 000000547 INF: FPGA: Recv ZSGSRD 35233 17-03-17 23:40:13.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:13.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:13.048 -07 000000482 INF: FPGA: Recv ZSGSRD 35229 17-03-17 23:40:13.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:13.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:13.058 -07 000000438 INF: FPGA: Recv ZSGSRD 35243 17-03-17 23:40:13.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:13.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:13.068 -07 000000541 INF: FPGA: Recv ZSGSRD 35236 17-03-17 23:40:13.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:13.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:13.078 -07 000000502 INF: FPGA: Recv ZSGSRD 35233 17-03-17 23:40:13.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:13.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:13.088 -07 000000623 INF: FPGA: Recv ZSGSRD 35243 17-03-17 23:40:13.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:13.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:13.098 -07 000000618 INF: FPGA: Recv ZSGSRD 35232 17-03-17 23:40:13.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:13.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:13.108 -07 000000475 INF: FPGA: Recv ZSGSRD 35236 17-03-17 23:40:13.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:13.118 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:40:13.118 -07 000000541 INF: FPGA: Recv ZPIEZORD 30667 17-03-17 23:40:13.128 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:13.128 -07 000000610 INF: Z Motor: Piezo is near 45.5 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.556 V. Piezo Error = -10.0 V. 17-03-17 23:40:13.128 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.7 um, Read 10 ADC samples: Avg = 35236 (-165.8 uncal um), Error = 0.8 uncal um, Median = 35236 (-165.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35229 (-165.8 uncal um), Max = 35243 (-165.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um) 17-03-17 23:40:13.128 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35236, posNoise = 7, negNoise = 7 17-03-17 23:40:13.128 -07 000000610 INF: Z Motor: After move to -0.166670, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:40:13.128 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms) 17-03-17 23:40:13.128 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:40:13.128 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:40:13.128 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:40:13.128 -07 000000409 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:40:13.128 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 23:40:13.128 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:40:13.128 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 23:40:13.128 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 23:40:13.128 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-17 23:40:13.128 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 23:40:13.128 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-17 23:40:13.128 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 23:40:13.138 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-17 23:40:13.138 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 23:40:13.138 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms. 17-03-17 23:40:13.138 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 23:40:13.148 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms. 17-03-17 23:40:13.148 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms. 17-03-17 23:40:13.148 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms. 17-03-17 23:40:13.148 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 24 ms. 17-03-17 23:40:13.158 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 36586 150\n [Camera] 17-03-17 23:40:13.358 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 23:40:14.398 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229 17-03-17 23:40:14.398 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229 17-03-17 23:40:14.398 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:40:14.398 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229 17-03-17 23:40:14.398 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229 17-03-17 23:40:14.398 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:40:14.398 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:40:14.398 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start. 17-03-17 23:40:14.398 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:40:14.398 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2201991440, 0x0, 391868352) start. 17-03-17 23:40:14.588 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36586 1425 17-03-17 23:40:14.738 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1575 17-03-17 23:40:14.798 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 397 ms. 17-03-17 23:40:14.798 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms. 17-03-17 23:40:14.798 -07 000000438 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:40:14.798 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:40:14.798 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2201991440, 0x0, 391868352) end. Duration was 396 ms. 17-03-17 23:40:14.798 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms. 17-03-17 23:40:14.798 -07 000000482 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:40:14.798 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:40:14.798 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms. 17-03-17 23:40:14.808 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms. 17-03-17 23:40:15.198 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 3.99219, 17-03-17 23:40:15.238 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2075 17-03-17 23:40:15.238 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2075 17-03-17 23:40:15.238 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:40:15.238 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2075 17-03-17 23:40:15.238 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2075 17-03-17 23:40:15.248 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:40:15.248 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:40:15.248 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start. 17-03-17 23:40:15.248 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:40:15.248 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start. 17-03-17 23:40:15.428 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP 2265 17-03-17 23:40:15.428 -07 000000409 INF: FPGA: Recv CAMDBLSNAP 17-03-17 23:40:15.428 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 36586 150' command took 2 ms to send, 2264 ms to get response, and 2272 ms overall 17-03-17 23:40:15.428 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-17 23:40:15.428 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.35546875, Z-Position -0.166686891038224. ------ 17-03-17 23:40:15.438 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:40:15.438 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17348 mm 17-03-17 23:40:15.438 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 23:40:15.438 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True) 17-03-17 23:40:15.438 -07 000000480 INF: Y Motor: Moving to 73.1926 mm, started at 72.3555 mm, delta = 0.8371 mm 17-03-17 23:40:15.438 -07 000000482 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:40:15.438 -07 000000459 INF: Z Motor: Entering MoveAbsStepped (DAC = 37897, sync = True, waitForSettling = False) 17-03-17 23:40:15.438 -07 000000459 INF: Z Motor: Moving to -0.173481 mm, started at -0.166687 mm, distance = -6.79 um 17-03-17 23:40:15.448 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:40:15.448 -07 000000459 INF: FPGA: Xmit ZDACW 37897\n [Z Motor] 17-03-17 23:40:15.448 -07 000000502 INF: FPGA: Recv ZDACW 17-03-17 23:40:15.458 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:40:15.458 -07 000000459 INF: FPGA: 'ZDACW 37897' command took 0 ms to send, 0 ms to get response, and 11 ms overall 17-03-17 23:40:15.458 -07 000000409 INF: FPGA: Recv YRDPOS 148184 17-03-17 23:40:15.468 -07 000000547 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 23:40:15.468 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 22 ms overall 17-03-17 23:40:15.468 -07 000000480 INF: Y Motor: Encoder = 148184 = motor step 115768.8 = 72.3555 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:40:15.468 -07 000000480 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 23:40:15.468 -07 000000480 INF: Y Motor: Moving 1339 steps-15 17-03-17 23:40:15.478 -07 000000459 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:40:15.478 -07 000000482 INF: FPGA: Recv ZDACR 37897 17-03-17 23:40:15.488 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 23:40:15.488 -07 000000459 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-17 23:40:15.488 -07 000000459 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet)) 17-03-17 23:40:15.628 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 384 ms. 17-03-17 23:40:15.628 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 385 ms. 17-03-17 23:40:15.628 -07 000000618 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:40:15.628 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:40:15.638 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 391 ms. 17-03-17 23:40:15.638 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms. 17-03-17 23:40:15.638 -07 000000576 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:40:15.638 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 395 ms. 17-03-17 23:40:15.638 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:40:15.638 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms. 17-03-17 23:40:15.668 -07 000000486 INF: FPGA: Recv FOCMRRFOC 17-03-17 23:40:15.668 -07 000000547 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall 17-03-17 23:40:15.858 -07 000000627 INF: FPGA: Recv YMVTILE 17-03-17 23:40:15.858 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall 17-03-17 23:40:15.908 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:40:15.908 -07 000000623 INF: FPGA: Recv YRDPOS 149877 17-03-17 23:40:15.918 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:40:15.918 -07 000000480 INF: Y Motor: Encoder = 149877 = motor step 117091.4 = 73.1821 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:40:15.918 -07 000000480 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm) 17-03-17 23:40:15.918 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.837 mm, average velocity = 2.103 mm/sec 17-03-17 23:40:16.868 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:40:16.868 -07 000000618 INF: FPGA: Recv YRDPOS 149877 17-03-17 23:40:16.878 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:40:16.878 -07 000000480 INF: Y Motor: Encoder = 149877 = motor step 117091.4 = 73.1821 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:40:16.898 -07 000000480 INF: Y Motor: After move to 73.192604, error = -0.010475, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 23:40:16.898 -07 000000480 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm) 17-03-17 23:40:16.898 -07 000000480 INF: Y Motor: Moved to 73.1821 after 1461 ms (table move) 17-03-17 23:40:16.908 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173481 mm (DAC = 37897) 17-03-17 23:40:16.908 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:16.908 -07 000000482 INF: FPGA: Recv ZSGSRD 36296 17-03-17 23:40:16.918 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:16.918 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:16.918 -07 000000618 INF: FPGA: Recv ZSGSRD 36290 17-03-17 23:40:16.928 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:16.928 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:16.928 -07 000000547 INF: FPGA: Recv ZSGSRD 36297 17-03-17 23:40:16.938 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:16.938 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:16.938 -07 000000448 INF: FPGA: Recv ZSGSRD 36283 17-03-17 23:40:16.948 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:16.948 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:16.948 -07 000000512 INF: FPGA: Recv ZSGSRD 36294 17-03-17 23:40:16.958 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:16.958 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:16.958 -07 000000623 INF: FPGA: Recv ZSGSRD 36299 17-03-17 23:40:16.968 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:16.968 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:16.968 -07 000000547 INF: FPGA: Recv ZSGSRD 36298 17-03-17 23:40:16.978 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:16.978 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:16.978 -07 000000459 INF: FPGA: Recv ZSGSRD 36299 17-03-17 23:40:16.988 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:16.988 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:16.988 -07 000000409 INF: FPGA: Recv ZSGSRD 36297 17-03-17 23:40:16.998 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:16.998 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:16.998 -07 000000502 INF: FPGA: Recv ZSGSRD 36290 17-03-17 23:40:17.008 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:17.008 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:40:17.008 -07 000000547 INF: FPGA: Recv ZPIEZORD 32108 17-03-17 23:40:17.018 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:17.018 -07 000000438 INF: Z Motor: Piezo is near 48.6 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.783 V. Piezo Error = -9.2 V. 17-03-17 23:40:17.018 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.5 um, Read 10 ADC samples: Avg = 36294 (-172.6 uncal um), Error = 0.9 uncal um, Median = 36296 (-172.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36283 (-172.5 uncal um), Max = 36299 (-172.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 11 (0.1 uncal um) 17-03-17 23:40:17.018 -07 000000438 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36294, posNoise = 5, negNoise = 11 17-03-17 23:40:17.018 -07 000000438 INF: Z Motor: After move to -0.173481, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:40:17.018 -07 000000438 INF: Z Motor: Settle wait time = 1462 ms, measure time = 110 ms (allowed 150 ms), total time = 1572 ms 17-03-17 23:40:17.018 -07 000000438 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms 17-03-17 23:40:17.058 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1618 ms 17-03-17 23:40:17.058 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 23:40:17.058 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:40:17.058 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:40:17.058 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 23:40:17.058 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:40:17.058 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:40:17.058 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:40:17.058 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-17 23:40:17.058 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 23:40:17.068 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-17 23:40:17.068 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 23:40:17.068 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms. 17-03-17 23:40:17.068 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms. 17-03-17 23:40:17.078 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:40:17.088 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:40:17.088 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:40:17.118 -07 000000486 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 23:40:17.418 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-17 23:40:17.418 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-17 23:40:17.418 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 23:40:17.418 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2182910056, 0x0, 559484976) start. 17-03-17 23:40:17.458 -07 000000486 INF: FPGA: Recv @CAMSNAP 380 17-03-17 23:40:17.458 -07 000000459 INF: FPGA: Recv CAMSNAP 17-03-17 23:40:17.458 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall 17-03-17 23:40:17.538 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 2182910056, 0x0, 559484976) end. Duration was 116 ms. 17-03-17 23:40:17.538 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:40:17.538 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms. 17-03-17 23:40:17.538 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms. 17-03-17 23:40:17.558 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:40:17.558 -07 000000576 INF: Autofocus start 17-03-17 23:40:17.558 -07 000000576 INF: MeasureProfile start 17-03-17 23:40:17.558 -07 000000459 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:40:17.568 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 23:40:17.568 -07 000000547 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 23:40:17.568 -07 000000576 INF: MeasureProfile done 17-03-17 23:40:17.568 -07 000000576 INF: X=-16 Z correction [um]=-0.1496812 17-03-17 23:40:17.568 -07 000000576 INF: Autofocus finished 17-03-17 23:40:17.768 -07 000000627 INF: FPGA: Recv FOCMRRIMG 17-03-17 23:40:17.768 -07 000000547 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 23:40:17.768 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.18212890625, Z-position -0.173483707484207. ---------- 17-03-17 23:40:17.778 -07 000000610 INF: Cycle 77 Tile 17 Exposure Settings A 1037 G 500 T 500 C 1037 17-03-17 23:40:17.778 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36377, sync = True, waitForSettling = True) 17-03-17 23:40:17.778 -07 000000610 INF: Z Motor: Moving to -0.166523 mm, started at -0.173484 mm, distance = 6.96 um 17-03-17 23:40:17.778 -07 000000610 INF: FPGA: Xmit ZDACW 36377\n [Z Motor] 17-03-17 23:40:17.778 -07 000000433 INF: FPGA: Recv ZDACW 17-03-17 23:40:17.788 -07 000000610 INF: FPGA: 'ZDACW 36377' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:40:17.788 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:40:17.788 -07 000000459 INF: FPGA: Recv ZDACR 36377 17-03-17 23:40:17.798 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:17.798 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:40:17.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:17.948 -07 000000541 INF: FPGA: Recv ZSGSRD 35215 17-03-17 23:40:17.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:40:17.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:17.958 -07 000000480 INF: FPGA: Recv ZSGSRD 35210 17-03-17 23:40:17.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:17.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:17.968 -07 000000623 INF: FPGA: Recv ZSGSRD 35211 17-03-17 23:40:17.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:17.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:17.978 -07 000000438 INF: FPGA: Recv ZSGSRD 35213 17-03-17 23:40:17.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:17.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:17.988 -07 000000459 INF: FPGA: Recv ZSGSRD 35213 17-03-17 23:40:17.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:17.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:17.998 -07 000000541 INF: FPGA: Recv ZSGSRD 35214 17-03-17 23:40:18.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:18.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:18.008 -07 000000547 INF: FPGA: Recv ZSGSRD 35209 17-03-17 23:40:18.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:18.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:18.018 -07 000000480 INF: FPGA: Recv ZSGSRD 35215 17-03-17 23:40:18.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:18.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:18.028 -07 000000618 INF: FPGA: Recv ZSGSRD 35210 17-03-17 23:40:18.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:18.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:18.038 -07 000000459 INF: FPGA: Recv ZSGSRD 35216 17-03-17 23:40:18.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:18.048 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:40:18.048 -07 000000561 INF: FPGA: Recv ZPIEZORD 30664 17-03-17 23:40:18.058 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:18.058 -07 000000610 INF: Z Motor: Piezo is near 45.5 V (nominally 0 to 100 V), expect near 55.5 V, since DAC is at 5.551 V. Piezo Error = -10.0 V. 17-03-17 23:40:18.058 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.5 um, Read 10 ADC samples: Avg = 35213 (-165.7 uncal um), Error = 0.9 uncal um, Median = 35213 (-165.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35209 (-165.6 uncal um), Max = 35216 (-165.7 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um) 17-03-17 23:40:18.058 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35213, posNoise = 3, negNoise = 4 17-03-17 23:40:18.058 -07 000000610 INF: Z Motor: After move to -0.166523, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:40:18.058 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms) 17-03-17 23:40:18.058 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:40:18.058 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:40:18.058 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:40:18.058 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:40:18.058 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 23:40:18.058 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:40:18.058 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 23:40:18.058 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 23:40:18.058 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:40:18.058 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 23:40:18.058 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-17 23:40:18.058 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 23:40:18.068 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms. 17-03-17 23:40:18.068 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 23:40:18.068 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-17 23:40:18.068 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 23:40:18.078 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms. 17-03-17 23:40:18.078 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms. 17-03-17 23:40:18.078 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms. 17-03-17 23:40:18.078 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms. 17-03-17 23:40:18.078 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 36553 150\n [Camera] 17-03-17 23:40:18.278 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 23:40:19.318 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229 17-03-17 23:40:19.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229 17-03-17 23:40:19.318 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:40:19.318 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:40:19.318 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) start. 17-03-17 23:40:19.328 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229 17-03-17 23:40:19.328 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229 17-03-17 23:40:19.328 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:40:19.328 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:40:19.328 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start. 17-03-17 23:40:19.518 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36553 1422 17-03-17 23:40:19.658 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572 17-03-17 23:40:19.718 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) end. Duration was 399 ms. 17-03-17 23:40:19.718 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms. 17-03-17 23:40:19.718 -07 000000459 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:40:19.728 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 400 ms. 17-03-17 23:40:19.728 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:40:19.728 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms. 17-03-17 23:40:19.728 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms. 17-03-17 23:40:19.728 -07 000000627 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:40:19.728 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:40:19.738 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms. 17-03-17 23:40:20.168 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072 17-03-17 23:40:20.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072 17-03-17 23:40:20.168 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:40:20.278 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072 17-03-17 23:40:20.278 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072 17-03-17 23:40:20.278 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:40:20.278 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:40:20.278 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) start. 17-03-17 23:40:20.288 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:40:20.288 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start. 17-03-17 23:40:20.358 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP 2265 17-03-17 23:40:20.358 -07 000000409 INF: FPGA: Recv CAMDBLSNAP 17-03-17 23:40:20.358 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 36553 150' command took 2 ms to send, 2261 ms to get response, and 2272 ms overall 17-03-17 23:40:20.358 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-17 23:40:20.358 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.18212890625, Z-Position -0.166539134158964. ------ 17-03-17 23:40:20.358 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:40:20.358 -07 000000627 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17333 mm 17-03-17 23:40:20.358 -07 000000627 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 23:40:20.358 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True) 17-03-17 23:40:20.358 -07 000000576 INF: Y Motor: Moving to 74.0226 mm, started at 73.1821 mm, delta = 0.8405 mm 17-03-17 23:40:20.368 -07 000000480 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:40:20.368 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-17 23:40:20.368 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:40:20.368 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 37864, sync = True, waitForSettling = False) 17-03-17 23:40:20.368 -07 000000561 INF: Z Motor: Moving to -0.173330 mm, started at -0.166539 mm, distance = -6.79 um 17-03-17 23:40:20.368 -07 000000409 INF: FPGA: Recv YRDPOS 149878 17-03-17 23:40:20.378 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:20.378 -07 000000576 INF: Y Motor: Encoder = 149878 = motor step 117092.2 = 73.1826 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:40:20.378 -07 000000459 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 23:40:20.378 -07 000000576 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 23:40:20.378 -07 000000576 INF: Y Motor: Moving 1344 steps-21 17-03-17 23:40:20.388 -07 000000561 INF: FPGA: Xmit ZDACW 37864\n [Z Motor] 17-03-17 23:40:20.388 -07 000000541 INF: FPGA: Recv ZDACW 17-03-17 23:40:20.398 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 23:40:20.398 -07 000000561 INF: FPGA: 'ZDACW 37864' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-17 23:40:20.408 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:40:20.408 -07 000000438 INF: FPGA: Recv ZDACR 37864 17-03-17 23:40:20.418 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-17 23:40:20.418 -07 000000561 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet)) 17-03-17 23:40:20.578 -07 000000541 INF: FPGA: Recv FOCMRRFOC 17-03-17 23:40:20.578 -07 000000459 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall 17-03-17 23:40:20.598 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 4.020806, 17-03-17 23:40:20.658 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) end. Duration was 381 ms. 17-03-17 23:40:20.658 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms. 17-03-17 23:40:20.658 -07 000000433 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:40:20.668 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:40:20.668 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms. 17-03-17 23:40:20.668 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 384 ms. 17-03-17 23:40:20.668 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms. 17-03-17 23:40:20.668 -07 000000448 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:40:20.678 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:40:20.678 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 511 ms. 17-03-17 23:40:20.768 -07 000000486 INF: FPGA: Recv YMVTILE 17-03-17 23:40:20.768 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall 17-03-17 23:40:20.808 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:40:20.808 -07 000000459 INF: FPGA: Recv YRDPOS 151581 17-03-17 23:40:20.818 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:40:20.818 -07 000000576 INF: Y Motor: Encoder = 151581 = motor step 118422.7 = 74.0142 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:40:20.818 -07 000000576 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm) 17-03-17 23:40:20.818 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.840 mm, average velocity = 2.139 mm/sec 17-03-17 23:40:21.768 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:40:21.768 -07 000000475 INF: FPGA: Recv YRDPOS 151581 17-03-17 23:40:21.778 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:40:21.778 -07 000000576 INF: Y Motor: Encoder = 151581 = motor step 118422.7 = 74.0142 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:40:21.788 -07 000000576 INF: Y Motor: After move to 74.022606, error = -0.008446, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 23:40:21.788 -07 000000576 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm) 17-03-17 23:40:21.788 -07 000000576 INF: Y Motor: Moved to 74.0142 after 1429 ms (table move) 17-03-17 23:40:21.798 -07 000000627 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173330 mm (DAC = 37864) 17-03-17 23:40:21.798 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:21.798 -07 000000482 INF: FPGA: Recv ZSGSRD 36279 17-03-17 23:40:21.808 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 23:40:21.808 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:21.808 -07 000000561 INF: FPGA: Recv ZSGSRD 36276 17-03-17 23:40:21.818 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:21.818 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:21.818 -07 000000438 INF: FPGA: Recv ZSGSRD 36273 17-03-17 23:40:21.828 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:21.828 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:21.828 -07 000000475 INF: FPGA: Recv ZSGSRD 36276 17-03-17 23:40:21.838 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:21.838 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:21.838 -07 000000482 INF: FPGA: Recv ZSGSRD 36264 17-03-17 23:40:21.848 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:21.848 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:21.848 -07 000000433 INF: FPGA: Recv ZSGSRD 36265 17-03-17 23:40:21.858 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:21.858 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:21.858 -07 000000438 INF: FPGA: Recv ZSGSRD 36274 17-03-17 23:40:21.868 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:21.868 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:21.868 -07 000000502 INF: FPGA: Recv ZSGSRD 36265 17-03-17 23:40:21.878 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:21.878 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:21.878 -07 000000409 INF: FPGA: Recv ZSGSRD 36272 17-03-17 23:40:21.888 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:21.888 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:21.888 -07 000000475 INF: FPGA: Recv ZSGSRD 36268 17-03-17 23:40:21.898 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:21.898 -07 000000627 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:40:21.898 -07 000000459 INF: FPGA: Recv ZPIEZORD 32063 17-03-17 23:40:21.908 -07 000000627 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:21.908 -07 000000627 INF: Z Motor: Piezo is near 48.5 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.778 V. Piezo Error = -9.3 V. 17-03-17 23:40:21.908 -07 000000627 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.3 um, Read 10 ADC samples: Avg = 36271 (-172.5 uncal um), Error = 0.9 uncal um, Median = 36272 (-172.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36264 (-172.4 uncal um), Max = 36279 (-172.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um) 17-03-17 23:40:21.908 -07 000000627 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36271, posNoise = 8, negNoise = 7 17-03-17 23:40:21.908 -07 000000627 INF: Z Motor: After move to -0.173330, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:40:21.908 -07 000000627 INF: Z Motor: Settle wait time = 1432 ms, measure time = 107 ms (allowed 150 ms), total time = 1539 ms 17-03-17 23:40:21.908 -07 000000627 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms 17-03-17 23:40:21.958 -07 000000627 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1592 ms 17-03-17 23:40:21.958 -07 000000627 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 23:40:21.958 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:40:21.958 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:40:21.958 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:40:21.958 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:40:21.958 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 23:40:21.968 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:40:21.968 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:40:21.968 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 23:40:21.968 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-17 23:40:21.968 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 23:40:21.978 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms. 17-03-17 23:40:21.978 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms. 17-03-17 23:40:21.978 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:40:22.018 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 23:40:22.088 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:40:22.088 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:40:22.318 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-17 23:40:22.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-17 23:40:22.318 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 23:40:22.318 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 679626736, 0x0, 559484976) start. 17-03-17 23:40:22.358 -07 000000547 INF: FPGA: Recv @CAMSNAP 380 17-03-17 23:40:22.358 -07 000000459 INF: FPGA: Recv CAMSNAP 17-03-17 23:40:22.358 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall 17-03-17 23:40:22.448 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 679626736, 0x0, 559484976) end. Duration was 127 ms. 17-03-17 23:40:22.448 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:40:22.448 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms. 17-03-17 23:40:22.448 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms. 17-03-17 23:40:22.558 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:40:22.558 -07 000000576 INF: Autofocus start 17-03-17 23:40:22.558 -07 000000576 INF: MeasureProfile start 17-03-17 23:40:22.558 -07 000000459 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:40:22.568 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-17 23:40:22.568 -07 000000541 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 23:40:22.568 -07 000000576 INF: MeasureProfile done 17-03-17 23:40:22.568 -07 000000576 INF: X=-80 Z correction [um]=-0.4885566 17-03-17 23:40:22.568 -07 000000576 INF: Autofocus finished 17-03-17 23:40:22.768 -07 000000547 INF: FPGA: Recv FOCMRRIMG 17-03-17 23:40:22.768 -07 000000541 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 23:40:22.768 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.01416015625, Z-position -0.173335950604947. ---------- 17-03-17 23:40:22.768 -07 000000610 INF: Cycle 77 Tile 18 Exposure Settings A 1037 G 500 T 500 C 1037 17-03-17 23:40:22.778 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36270, sync = True, waitForSettling = True) 17-03-17 23:40:22.778 -07 000000610 INF: Z Motor: Moving to -0.166033 mm, started at -0.173336 mm, distance = 7.30 um 17-03-17 23:40:22.778 -07 000000610 INF: FPGA: Xmit ZDACW 36270\n [Z Motor] 17-03-17 23:40:22.778 -07 000000438 INF: FPGA: Recv ZDACW 17-03-17 23:40:22.788 -07 000000610 INF: FPGA: 'ZDACW 36270' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:40:22.788 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:40:22.788 -07 000000409 INF: FPGA: Recv ZDACR 36270 17-03-17 23:40:22.798 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:22.798 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:40:22.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:22.948 -07 000000541 INF: FPGA: Recv ZSGSRD 35140 17-03-17 23:40:22.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:40:22.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:22.958 -07 000000433 INF: FPGA: Recv ZSGSRD 35137 17-03-17 23:40:22.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:22.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:22.968 -07 000000486 INF: FPGA: Recv ZSGSRD 35130 17-03-17 23:40:22.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:22.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:22.978 -07 000000627 INF: FPGA: Recv ZSGSRD 35140 17-03-17 23:40:22.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:22.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:22.988 -07 000000512 INF: FPGA: Recv ZSGSRD 35139 17-03-17 23:40:22.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:22.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:22.998 -07 000000502 INF: FPGA: Recv ZSGSRD 35143 17-03-17 23:40:23.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:23.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:23.008 -07 000000433 INF: FPGA: Recv ZSGSRD 35139 17-03-17 23:40:23.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:23.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:23.018 -07 000000618 INF: FPGA: Recv ZSGSRD 35135 17-03-17 23:40:23.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:23.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:23.028 -07 000000438 INF: FPGA: Recv ZSGSRD 35143 17-03-17 23:40:23.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:23.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:23.038 -07 000000482 INF: FPGA: Recv ZSGSRD 35132 17-03-17 23:40:23.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:23.048 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:40:23.048 -07 000000475 INF: FPGA: Recv ZPIEZORD 30502 17-03-17 23:40:23.058 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:23.058 -07 000000610 INF: Z Motor: Piezo is near 45.2 V (nominally 0 to 100 V), expect near 55.3 V, since DAC is at 5.534 V. Piezo Error = -10.2 V. 17-03-17 23:40:23.058 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.0 um, Read 10 ADC samples: Avg = 35138 (-165.2 uncal um), Error = 0.8 uncal um, Median = 35139 (-165.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 35130 (-165.1 uncal um), Max = 35143 (-165.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um) 17-03-17 23:40:23.058 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35138, posNoise = 5, negNoise = 8 17-03-17 23:40:23.058 -07 000000610 INF: Z Motor: After move to -0.166033, error = -0.000024, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:40:23.058 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms) 17-03-17 23:40:23.058 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:40:23.058 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:40:23.058 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:40:23.058 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:40:23.058 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 23:40:23.058 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 23:40:23.058 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 23:40:23.058 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:40:23.058 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-17 23:40:23.058 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 23:40:23.058 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:40:23.058 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 23:40:23.068 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-17 23:40:23.068 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 23:40:23.068 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-17 23:40:23.068 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 23:40:23.078 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms. 17-03-17 23:40:23.078 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms. 17-03-17 23:40:23.078 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms. 17-03-17 23:40:23.078 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms. 17-03-17 23:40:23.088 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 36447 150\n [Camera] 17-03-17 23:40:23.288 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 23:40:24.318 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229 17-03-17 23:40:24.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229 17-03-17 23:40:24.318 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:40:24.318 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:40:24.318 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1450278672, 0x0, 391868352) start. 17-03-17 23:40:24.328 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229 17-03-17 23:40:24.328 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229 17-03-17 23:40:24.328 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:40:24.328 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:40:24.328 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1485700936, 0x0, 418435064) start. 17-03-17 23:40:24.518 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36447 1422 17-03-17 23:40:24.668 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572 17-03-17 23:40:24.708 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1485700936, 0x0, 418435064) end. Duration was 387 ms. 17-03-17 23:40:24.708 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms. 17-03-17 23:40:24.708 -07 000000482 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:40:24.718 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:40:24.828 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1450278672, 0x0, 391868352) end. Duration was 503 ms. 17-03-17 23:40:24.828 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 504 ms. 17-03-17 23:40:24.828 -07 000000486 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:40:24.828 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:40:24.828 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 508 ms. 17-03-17 23:40:24.838 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 509 ms. 17-03-17 23:40:25.168 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072 17-03-17 23:40:25.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072 17-03-17 23:40:25.168 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:40:25.168 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072 17-03-17 23:40:25.168 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072 17-03-17 23:40:25.168 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:40:25.168 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:40:25.168 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start. 17-03-17 23:40:25.178 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:40:25.178 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) start. 17-03-17 23:40:25.358 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP 2265 17-03-17 23:40:25.358 -07 000000623 INF: FPGA: Recv CAMDBLSNAP 17-03-17 23:40:25.358 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 36447 150' command took 2 ms to send, 2262 ms to get response, and 2272 ms overall 17-03-17 23:40:25.358 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-17 23:40:25.358 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.01416015625, Z-Position -0.166057318248331. ------ 17-03-17 23:40:25.358 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:40:25.358 -07 000000541 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17284 mm 17-03-17 23:40:25.358 -07 000000541 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 23:40:25.368 -07 000000480 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:40:25.368 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 4 ms overall 17-03-17 23:40:25.368 -07 000000475 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 23:40:25.368 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True) 17-03-17 23:40:25.368 -07 000000438 INF: Y Motor: Moving to 74.8526 mm, started at 74.0142 mm, delta = 0.8384 mm 17-03-17 23:40:25.368 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 37757, sync = True, waitForSettling = False) 17-03-17 23:40:25.368 -07 000000627 INF: Z Motor: Moving to -0.172840 mm, started at -0.166057 mm, distance = -6.78 um 17-03-17 23:40:25.378 -07 000000627 INF: FPGA: Xmit ZDACW 37757\n [Z Motor] 17-03-17 23:40:25.378 -07 000000547 INF: FPGA: Recv ZDACW 17-03-17 23:40:25.388 -07 000000627 INF: FPGA: 'ZDACW 37757' command took 0 ms to send, 0 ms to get response, and 16 ms overall 17-03-17 23:40:25.388 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:40:25.388 -07 000000480 INF: FPGA: Recv YRDPOS 151581 17-03-17 23:40:25.398 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:40:25.398 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall 17-03-17 23:40:25.398 -07 000000438 INF: Y Motor: Encoder = 151581 = motor step 118422.7 = 74.0142 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:40:25.398 -07 000000438 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 23:40:25.398 -07 000000438 INF: Y Motor: Moving 1342 steps-17 17-03-17 23:40:25.398 -07 000000448 INF: FPGA: Recv ZDACR 37757 17-03-17 23:40:25.408 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-17 23:40:25.408 -07 000000627 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet)) 17-03-17 23:40:25.408 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 23:40:25.568 -07 000000547 INF: FPGA: Recv FOCMRRFOC 17-03-17 23:40:25.568 -07 000000475 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall 17-03-17 23:40:25.568 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 400 ms. 17-03-17 23:40:25.568 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms. 17-03-17 23:40:25.568 -07 000000459 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:40:25.568 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) end. Duration was 395 ms. 17-03-17 23:40:25.568 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms. 17-03-17 23:40:25.568 -07 000000409 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:40:25.578 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:40:25.578 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:40:25.578 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms. 17-03-17 23:40:25.578 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms. 17-03-17 23:40:25.778 -07 000000433 INF: FPGA: Recv YMVTILE 17-03-17 23:40:25.778 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall 17-03-17 23:40:25.808 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:40:25.808 -07 000000512 INF: FPGA: Recv YRDPOS 153268 17-03-17 23:40:25.818 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-17 23:40:25.818 -07 000000438 INF: Y Motor: Encoder = 153268 = motor step 119740.6 = 74.8379 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:40:25.818 -07 000000438 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm) 17-03-17 23:40:25.818 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.838 mm, average velocity = 2.161 mm/sec 17-03-17 23:40:25.958 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 4.023489, 17-03-17 23:40:26.768 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:40:26.768 -07 000000627 INF: FPGA: Recv YRDPOS 153268 17-03-17 23:40:26.778 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:26.778 -07 000000438 INF: Y Motor: Encoder = 153268 = motor step 119740.6 = 74.8379 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:40:26.788 -07 000000438 INF: Y Motor: After move to 74.852608, error = -0.014717, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 23:40:26.788 -07 000000438 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm) 17-03-17 23:40:26.788 -07 000000438 INF: Y Motor: Moved to 74.8379 after 1424 ms (table move) 17-03-17 23:40:26.798 -07 000000541 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172840 mm (DAC = 37757) 17-03-17 23:40:26.798 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:26.798 -07 000000627 INF: FPGA: Recv ZSGSRD 36190 17-03-17 23:40:26.808 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:40:26.808 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:26.808 -07 000000561 INF: FPGA: Recv ZSGSRD 36199 17-03-17 23:40:26.818 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:26.818 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:26.818 -07 000000618 INF: FPGA: Recv ZSGSRD 36197 17-03-17 23:40:26.828 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:26.828 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:26.828 -07 000000433 INF: FPGA: Recv ZSGSRD 36198 17-03-17 23:40:26.838 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:26.838 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:26.838 -07 000000502 INF: FPGA: Recv ZSGSRD 36192 17-03-17 23:40:26.848 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:26.848 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:26.848 -07 000000547 INF: FPGA: Recv ZSGSRD 36191 17-03-17 23:40:26.858 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:26.858 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:26.858 -07 000000618 INF: FPGA: Recv ZSGSRD 36189 17-03-17 23:40:26.868 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:26.868 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:26.868 -07 000000433 INF: FPGA: Recv ZSGSRD 36194 17-03-17 23:40:26.878 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:26.878 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:26.878 -07 000000502 INF: FPGA: Recv ZSGSRD 36200 17-03-17 23:40:26.888 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:26.888 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:26.888 -07 000000459 INF: FPGA: Recv ZSGSRD 36200 17-03-17 23:40:26.898 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:26.898 -07 000000541 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:40:26.898 -07 000000448 INF: FPGA: Recv ZPIEZORD 31932 17-03-17 23:40:26.908 -07 000000541 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:26.908 -07 000000541 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.761 V. Piezo Error = -9.4 V. 17-03-17 23:40:26.908 -07 000000541 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.8 um, Read 10 ADC samples: Avg = 36195 (-172.0 uncal um), Error = 0.9 uncal um, Median = 36196 (-172.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 36189 (-171.9 uncal um), Max = 36200 (-172.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um) 17-03-17 23:40:26.908 -07 000000541 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36195, posNoise = 5, negNoise = 6 17-03-17 23:40:26.908 -07 000000541 INF: Z Motor: After move to -0.172840, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:40:26.908 -07 000000541 INF: Z Motor: Settle wait time = 1428 ms, measure time = 108 ms (allowed 150 ms), total time = 1536 ms 17-03-17 23:40:26.908 -07 000000541 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms 17-03-17 23:40:26.958 -07 000000541 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1592 ms 17-03-17 23:40:26.958 -07 000000541 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 23:40:26.958 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:40:26.958 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:40:26.958 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:40:26.958 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:40:26.958 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 23:40:26.958 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:40:26.958 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-17 23:40:26.958 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 23:40:26.958 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-17 23:40:26.958 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 23:40:26.968 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms. 17-03-17 23:40:26.968 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms. 17-03-17 23:40:26.978 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:40:27.018 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 23:40:27.088 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:40:27.088 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:40:27.318 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-17 23:40:27.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-17 23:40:27.318 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 23:40:27.318 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) start. 17-03-17 23:40:27.358 -07 000000576 INF: FPGA: Recv @CAMSNAP 380 17-03-17 23:40:27.358 -07 000000512 INF: FPGA: Recv CAMSNAP 17-03-17 23:40:27.358 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall 17-03-17 23:40:27.438 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 675221432, 0x0, 559484976) end. Duration was 116 ms. 17-03-17 23:40:27.438 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:40:27.438 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-17 23:40:27.438 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms. 17-03-17 23:40:27.458 -07 000000448 INF: Autofocus start 17-03-17 23:40:27.458 -07 000000448 INF: MeasureProfile start 17-03-17 23:40:27.458 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:40:27.468 -07 000000576 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:40:27.468 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall 17-03-17 23:40:27.468 -07 000000459 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 23:40:27.478 -07 000000448 INF: MeasureProfile done 17-03-17 23:40:27.478 -07 000000448 INF: X=-144 Z correction [um]=-0.8274319 17-03-17 23:40:27.478 -07 000000448 INF: Autofocus finished 17-03-17 23:40:27.668 -07 000000409 INF: FPGA: Recv FOCMRRIMG 17-03-17 23:40:27.668 -07 000000459 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall 17-03-17 23:40:27.668 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.837890625, Z-position -0.172847710482173. ---------- 17-03-17 23:40:27.668 -07 000000610 INF: Cycle 77 Tile 19 Exposure Settings A 1037 G 500 T 500 C 1037 17-03-17 23:40:27.678 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36089, sync = True, waitForSettling = True) 17-03-17 23:40:27.678 -07 000000610 INF: Z Motor: Moving to -0.165205 mm, started at -0.172848 mm, distance = 7.64 um 17-03-17 23:40:27.678 -07 000000610 INF: FPGA: Xmit ZDACW 36089\n [Z Motor] 17-03-17 23:40:27.678 -07 000000438 INF: FPGA: Recv ZDACW 17-03-17 23:40:27.688 -07 000000610 INF: FPGA: 'ZDACW 36089' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:40:27.688 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:40:27.688 -07 000000482 INF: FPGA: Recv ZDACR 36089 17-03-17 23:40:27.698 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:27.698 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:40:27.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:27.848 -07 000000475 INF: FPGA: Recv ZSGSRD 35007 17-03-17 23:40:27.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:27.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:27.858 -07 000000486 INF: FPGA: Recv ZSGSRD 35009 17-03-17 23:40:27.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:27.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:27.868 -07 000000448 INF: FPGA: Recv ZSGSRD 35012 17-03-17 23:40:27.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:40:27.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:27.878 -07 000000438 INF: FPGA: Recv ZSGSRD 35005 17-03-17 23:40:27.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:27.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:27.888 -07 000000561 INF: FPGA: Recv ZSGSRD 35006 17-03-17 23:40:27.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:27.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:27.898 -07 000000618 INF: FPGA: Recv ZSGSRD 35008 17-03-17 23:40:27.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:27.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:27.908 -07 000000627 INF: FPGA: Recv ZSGSRD 35009 17-03-17 23:40:27.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:27.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:27.918 -07 000000475 INF: FPGA: Recv ZSGSRD 35006 17-03-17 23:40:27.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:27.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:27.928 -07 000000459 INF: FPGA: Recv ZSGSRD 35012 17-03-17 23:40:27.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:27.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:27.938 -07 000000561 INF: FPGA: Recv ZSGSRD 35005 17-03-17 23:40:27.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:27.948 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:40:27.948 -07 000000512 INF: FPGA: Recv ZPIEZORD 30367 17-03-17 23:40:27.958 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:27.958 -07 000000610 INF: Z Motor: Piezo is near 44.9 V (nominally 0 to 100 V), expect near 55.1 V, since DAC is at 5.507 V. Piezo Error = -10.2 V. 17-03-17 23:40:27.958 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.2 um, Read 10 ADC samples: Avg = 35008 (-164.4 uncal um), Error = 0.8 uncal um, Median = 35008 (-164.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35005 (-164.3 uncal um), Max = 35012 (-164.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um) 17-03-17 23:40:27.958 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35008, posNoise = 4, negNoise = 3 17-03-17 23:40:27.958 -07 000000610 INF: Z Motor: After move to -0.165205, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:40:27.958 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms) 17-03-17 23:40:27.958 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:40:27.958 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:40:27.958 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:40:27.958 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:40:27.958 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 23:40:27.958 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:40:27.958 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 23:40:27.958 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 23:40:27.958 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:40:27.958 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 23:40:27.958 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-17 23:40:27.958 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 23:40:27.958 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms. 17-03-17 23:40:27.958 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 23:40:27.968 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-17 23:40:27.968 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 23:40:27.978 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms. 17-03-17 23:40:27.978 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms. 17-03-17 23:40:27.978 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms. 17-03-17 23:40:27.978 -07 000000486 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms. 17-03-17 23:40:27.978 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 36266 150\n [Camera] 17-03-17 23:40:28.188 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 23:40:29.218 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229 17-03-17 23:40:29.218 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229 17-03-17 23:40:29.228 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:40:29.228 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:40:29.228 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1485700936, 0x0, 391868352) start. 17-03-17 23:40:29.228 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229 17-03-17 23:40:29.228 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229 17-03-17 23:40:29.228 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:40:29.228 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:40:29.228 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start. 17-03-17 23:40:29.418 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36266 1422 17-03-17 23:40:29.568 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572 17-03-17 23:40:29.628 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1485700936, 0x0, 391868352) end. Duration was 399 ms. 17-03-17 23:40:29.628 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms. 17-03-17 23:40:29.628 -07 000000561 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:40:29.628 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 398 ms. 17-03-17 23:40:29.628 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms. 17-03-17 23:40:29.628 -07 000000438 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:40:29.628 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:40:29.628 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms. 17-03-17 23:40:29.628 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:40:29.638 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms. 17-03-17 23:40:30.068 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072 17-03-17 23:40:30.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072 17-03-17 23:40:30.068 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:40:30.068 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:40:30.068 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start. 17-03-17 23:40:30.068 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072 17-03-17 23:40:30.068 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072 17-03-17 23:40:30.068 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:40:30.068 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:40:30.068 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) start. 17-03-17 23:40:30.258 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 2264 17-03-17 23:40:30.258 -07 000000627 INF: FPGA: Recv CAMDBLSNAP 17-03-17 23:40:30.258 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 36266 150' command took 2 ms to send, 2264 ms to get response, and 2274 ms overall 17-03-17 23:40:30.458 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) end. Duration was 390 ms. 17-03-17 23:40:30.458 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 390 ms. 17-03-17 23:40:30.458 -07 000000512 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:40:30.458 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 394 ms. 17-03-17 23:40:30.468 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms. 17-03-17 23:40:30.468 -07 000000409 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:40:30.468 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:40:30.468 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms. 17-03-17 23:40:30.468 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms. 17-03-17 23:40:30.468 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start. 17-03-17 23:40:30.468 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms. 17-03-17 23:40:30.508 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms. 17-03-17 23:40:30.508 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start. 17-03-17 23:40:30.558 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 43 ms. 17-03-17 23:40:30.558 -07 000000610 INF: Move compensator for Bottom-surface imaging. 17-03-17 23:40:30.558 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator] 17-03-17 23:40:30.558 -07 000000618 INF: FPGA: Recv EMCUR 17-03-17 23:40:30.568 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-17 23:40:30.568 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator] 17-03-17 23:40:31.068 -07 000000561 INF: FPGA: Recv EMIN 17-03-17 23:40:31.068 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 493 ms to get response, and 502 ms overall 17-03-17 23:40:31.068 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator] 17-03-17 23:40:31.068 -07 000000409 INF: FPGA: Recv EMCUR 17-03-17 23:40:31.078 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 23:40:31.078 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-17 23:40:31.078 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True) 17-03-17 23:40:31.078 -07 000000610 INF: Y Motor: Moving to 59.9126 mm, started at 74.8379 mm, delta = -14.9253 mm 17-03-17 23:40:31.078 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:40:31.078 -07 000000448 INF: FPGA: Recv YRDPOS 153269 17-03-17 23:40:31.088 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-17 23:40:31.088 -07 000000610 INF: Y Motor: Encoder = 153269 = motor step 119741.4 = 74.8384 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:40:31.088 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False 17-03-17 23:40:31.088 -07 000000610 INF: Y Motor: Moving to 122701 encoder counts 17-03-17 23:40:31.088 -07 000000610 INF: FPGA: Xmit YMVTO 122701\n [Y Motor] 17-03-17 23:40:31.328 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 4.020806, 17-03-17 23:40:32.088 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:40:32.098 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:40:32.718 -07 000000627 INF: FPGA: Recv YMVTO 122703 23914 17-03-17 23:40:32.718 -07 000000610 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1624 ms to get response, and 1631 ms overall 17-03-17 23:40:32.718 -07 000000610 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm) 17-03-17 23:40:32.718 -07 000000610 INF: Y Motor: To move from 74.838 to 59.913 (-14.925 mm) should take 23881 steps, but required 23914 steps (14.946 mm). Slippage = 0.021 mm (0.00%). 17-03-17 23:40:32.718 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1631 ms, distance = 14.925 mm, average velocity = 9.151 mm/sec 17-03-17 23:40:35.718 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:40:35.718 -07 000000627 INF: FPGA: Recv YRDPOS 122696 17-03-17 23:40:35.728 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:40:35.728 -07 000000610 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:40:35.758 -07 000000610 INF: Y Motor: After move to 59.912609, error = -0.002453, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 23:40:35.758 -07 000000610 INF: Y Motor: Position error after settling = -5 encoder counts (-0.002 mm), Delta during settling = -7 counts (-0.003 mm) 17-03-17 23:40:35.758 -07 000000610 INF: Y Motor: Moved to 59.9102 after 4681 ms 17-03-17 23:40:35.758 -07 000000610 INF: =================== Cycle #77, Imaging, Performing CoarseFocus. =================== 17-03-17 23:40:35.758 -07 000000610 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:40:35.768 -07 000000433 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:40:35.768 -07 000000610 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall 17-03-17 23:40:35.768 -07 000000610 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 23:40:35.968 -07 000000618 INF: FPGA: Recv FOCMRRIMG 17-03-17 23:40:35.968 -07 000000610 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall 17-03-17 23:40:35.968 -07 000000610 INF: Scanning Z-Position: -0.178747 17-03-17 23:40:35.968 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 39047, sync = True, waitForSettling = True) 17-03-17 23:40:35.968 -07 000000610 INF: Z Motor: Moving to -0.178746 mm, started at -0.165222 mm, distance = -13.52 um 17-03-17 23:40:35.968 -07 000000610 INF: FPGA: Xmit ZDACW 39047\n [Z Motor] 17-03-17 23:40:35.978 -07 000000433 INF: FPGA: Recv ZDACW 17-03-17 23:40:35.978 -07 000000610 INF: FPGA: 'ZDACW 39047' command took 0 ms to send, 0 ms to get response, and 2 ms overall 17-03-17 23:40:35.978 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:40:35.978 -07 000000618 INF: FPGA: Recv ZDACR 39047 17-03-17 23:40:35.988 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:35.988 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:40:36.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:36.138 -07 000000547 INF: FPGA: Recv ZSGSRD 37115 17-03-17 23:40:36.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:40:36.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:36.148 -07 000000438 INF: FPGA: Recv ZSGSRD 37111 17-03-17 23:40:36.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:36.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:36.158 -07 000000448 INF: FPGA: Recv ZSGSRD 37115 17-03-17 23:40:36.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:36.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:36.168 -07 000000433 INF: FPGA: Recv ZSGSRD 37119 17-03-17 23:40:36.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:36.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:36.178 -07 000000482 INF: FPGA: Recv ZSGSRD 37115 17-03-17 23:40:36.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:36.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:36.188 -07 000000547 INF: FPGA: Recv ZSGSRD 37113 17-03-17 23:40:36.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:36.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:36.198 -07 000000438 INF: FPGA: Recv ZSGSRD 37118 17-03-17 23:40:36.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:36.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:36.208 -07 000000618 INF: FPGA: Recv ZSGSRD 37114 17-03-17 23:40:36.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:36.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:36.218 -07 000000480 INF: FPGA: Recv ZSGSRD 37113 17-03-17 23:40:36.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:36.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:36.228 -07 000000448 INF: FPGA: Recv ZSGSRD 37111 17-03-17 23:40:36.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:40:36.238 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:40:36.238 -07 000000433 INF: FPGA: Recv ZPIEZORD 33135 17-03-17 23:40:36.248 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:36.248 -07 000000610 INF: Z Motor: Piezo is near 50.8 V (nominally 0 to 100 V), expect near 59.6 V, since DAC is at 5.958 V. Piezo Error = -8.8 V. 17-03-17 23:40:36.248 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -178.7 um, Read 10 ADC samples: Avg = 37114 (-177.9 uncal um), Error = 0.9 uncal um, Median = 37114 (-177.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 37111 (-177.8 uncal um), Max = 37119 (-177.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um) 17-03-17 23:40:36.248 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37114, posNoise = 5, negNoise = 3 17-03-17 23:40:36.248 -07 000000610 INF: Z Motor: After move to -0.178746, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:40:36.248 -07 000000610 INF: Z Motor: MoveAbsStepped took 273 ms) 17-03-17 23:40:36.248 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:40:36.248 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:40:36.248 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:40:36.248 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:40:36.248 -07 000000448 INF: Disarm and arm camera sensor 0: FullImageTriggered start. 17-03-17 23:40:36.248 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:40:36.248 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-17 23:40:36.248 -07 000000448 INF: Camera: sBCa_SetPowerMode(785074288, 1) start. 17-03-17 23:40:36.268 -07 000000448 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 20 ms. 17-03-17 23:40:36.268 -07 000000448 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start. 17-03-17 23:40:36.278 -07 000000448 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms. 17-03-17 23:40:36.278 -07 000000448 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start. 17-03-17 23:40:36.278 -07 000000448 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 5 ms. 17-03-17 23:40:36.278 -07 000000448 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 30 ms. 17-03-17 23:40:36.288 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:40:36.478 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 192 17-03-17 23:40:36.698 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 4.012614, 17-03-17 23:40:36.778 -07 000000482 INF: FPGA: Recv @CAMSNAP img rdy 492 17-03-17 23:40:36.778 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492 17-03-17 23:40:36.778 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start. 17-03-17 23:40:36.908 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 2147487792, 0x0, 314322768) start. 17-03-17 23:40:36.978 -07 000000502 INF: FPGA: Recv @CAMSNAP 685 17-03-17 23:40:36.978 -07 000000541 INF: FPGA: Recv CAMSNAP 17-03-17 23:40:36.978 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 681 ms to get response, and 689 ms overall 17-03-17 23:40:37.088 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:40:37.488 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 2147487792, 0x0, 314322768) end. Duration was 582 ms. 17-03-17 23:40:37.488 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:40:37.498 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:40:37.498 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 713 ms. 17-03-17 23:40:37.558 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:40:37.578 -07 000000610 INF: Using center-column region for through-focus analysis: Row=512; Col=2048 17-03-17 23:40:37.578 -07 000000610 INF: ComputeBrenner start 17-03-17 23:40:37.588 -07 000000610 INF: Image SNR check: start 17-03-17 23:40:37.598 -07 000000610 INF: Image SNR check: image is Faint [peak (Max-Min)=21.47] 17-03-17 23:40:37.598 -07 000000610 INF: Scanning Z-Position: -0.176747 17-03-17 23:40:37.598 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 38610, sync = True, waitForSettling = True) 17-03-17 23:40:37.598 -07 000000610 INF: Z Motor: Moving to -0.176745 mm, started at -0.178752 mm, distance = 2.01 um 17-03-17 23:40:37.598 -07 000000610 INF: FPGA: Xmit ZDACW 38610\n [Z Motor] 17-03-17 23:40:37.598 -07 000000561 INF: FPGA: Recv ZDACW 17-03-17 23:40:37.608 -07 000000610 INF: FPGA: 'ZDACW 38610' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-17 23:40:37.608 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:40:37.608 -07 000000409 INF: FPGA: Recv ZDACR 38610 17-03-17 23:40:37.618 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:37.618 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:40:37.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:37.768 -07 000000623 INF: FPGA: Recv ZSGSRD 36803 17-03-17 23:40:37.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:40:37.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:37.778 -07 000000480 INF: FPGA: Recv ZSGSRD 36808 17-03-17 23:40:37.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:37.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:37.788 -07 000000433 INF: FPGA: Recv ZSGSRD 36805 17-03-17 23:40:37.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:37.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:37.798 -07 000000486 INF: FPGA: Recv ZSGSRD 36800 17-03-17 23:40:37.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:37.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:37.808 -07 000000618 INF: FPGA: Recv ZSGSRD 36804 17-03-17 23:40:37.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:40:37.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:37.818 -07 000000459 INF: FPGA: Recv ZSGSRD 36803 17-03-17 23:40:37.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:37.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:37.828 -07 000000627 INF: FPGA: Recv ZSGSRD 36803 17-03-17 23:40:37.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:37.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:37.838 -07 000000576 INF: FPGA: Recv ZSGSRD 36803 17-03-17 23:40:37.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:37.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:37.848 -07 000000486 INF: FPGA: Recv ZSGSRD 36805 17-03-17 23:40:37.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:37.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:37.858 -07 000000459 INF: FPGA: Recv ZSGSRD 36808 17-03-17 23:40:37.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:40:37.868 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:40:37.868 -07 000000547 INF: FPGA: Recv ZPIEZORD 32665 17-03-17 23:40:37.878 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:37.878 -07 000000610 INF: Z Motor: Piezo is near 49.8 V (nominally 0 to 100 V), expect near 58.9 V, since DAC is at 5.892 V. Piezo Error = -9.1 V. 17-03-17 23:40:37.878 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.7 um, Read 10 ADC samples: Avg = 36804 (-175.9 uncal um), Error = 0.9 uncal um, Median = 36804 (-175.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 36800 (-175.8 uncal um), Max = 36808 (-175.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um) 17-03-17 23:40:37.878 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36804, posNoise = 4, negNoise = 4 17-03-17 23:40:37.878 -07 000000610 INF: Z Motor: After move to -0.176745, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:40:37.878 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms) 17-03-17 23:40:37.878 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:40:37.878 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:40:37.878 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:40:37.878 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:40:37.878 -07 000000459 INF: Disarm and arm camera sensor 0: FullImageTriggered start. 17-03-17 23:40:37.878 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:40:37.878 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:40:37.878 -07 000000459 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start. 17-03-17 23:40:37.888 -07 000000459 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms. 17-03-17 23:40:37.888 -07 000000459 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start. 17-03-17 23:40:37.898 -07 000000459 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms. 17-03-17 23:40:37.898 -07 000000459 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms. 17-03-17 23:40:37.898 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:40:38.098 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 192 17-03-17 23:40:38.398 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 492 17-03-17 23:40:38.398 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492 17-03-17 23:40:38.398 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start. 17-03-17 23:40:38.398 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) start. 17-03-17 23:40:38.588 -07 000000627 INF: FPGA: Recv @CAMSNAP 685 17-03-17 23:40:38.588 -07 000000486 INF: FPGA: Recv CAMSNAP 17-03-17 23:40:38.588 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 685 ms to get response, and 689 ms overall 17-03-17 23:40:38.978 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) end. Duration was 582 ms. 17-03-17 23:40:38.978 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:40:38.988 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:40:38.988 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 587 ms. 17-03-17 23:40:39.088 -07 000000610 INF: ComputeBrenner start 17-03-17 23:40:39.098 -07 000000610 INF: Image SNR check: start 17-03-17 23:40:39.108 -07 000000610 INF: Image SNR check: image is Faint [peak (Max-Min)=22.02] 17-03-17 23:40:39.108 -07 000000610 INF: Scanning Z-Position: -0.174747 17-03-17 23:40:39.108 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 38173, sync = True, waitForSettling = True) 17-03-17 23:40:39.108 -07 000000610 INF: Z Motor: Moving to -0.174745 mm, started at -0.176760 mm, distance = 2.02 um 17-03-17 23:40:39.108 -07 000000610 INF: FPGA: Xmit ZDACW 38173\n [Z Motor] 17-03-17 23:40:39.108 -07 000000547 INF: FPGA: Recv ZDACW 17-03-17 23:40:39.118 -07 000000610 INF: FPGA: 'ZDACW 38173' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 23:40:39.118 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:40:39.118 -07 000000482 INF: FPGA: Recv ZDACR 38173 17-03-17 23:40:39.128 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:39.128 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:40:39.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:39.278 -07 000000459 INF: FPGA: Recv ZSGSRD 36497 17-03-17 23:40:39.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:40:39.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:39.288 -07 000000561 INF: FPGA: Recv ZSGSRD 36493 17-03-17 23:40:39.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:39.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:39.298 -07 000000502 INF: FPGA: Recv ZSGSRD 36493 17-03-17 23:40:39.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:39.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:39.308 -07 000000433 INF: FPGA: Recv ZSGSRD 36492 17-03-17 23:40:39.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:39.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:39.318 -07 000000547 INF: FPGA: Recv ZSGSRD 36488 17-03-17 23:40:39.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:39.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:39.328 -07 000000627 INF: FPGA: Recv ZSGSRD 36496 17-03-17 23:40:39.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:39.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:39.338 -07 000000448 INF: FPGA: Recv ZSGSRD 36481 17-03-17 23:40:39.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:39.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:39.348 -07 000000541 INF: FPGA: Recv ZSGSRD 36504 17-03-17 23:40:39.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:39.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:39.358 -07 000000576 INF: FPGA: Recv ZSGSRD 36493 17-03-17 23:40:39.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:39.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:39.368 -07 000000502 INF: FPGA: Recv ZSGSRD 36484 17-03-17 23:40:39.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:39.378 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:40:39.378 -07 000000541 INF: FPGA: Recv ZPIEZORD 32261 17-03-17 23:40:39.388 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:39.388 -07 000000610 INF: Z Motor: Piezo is near 48.9 V (nominally 0 to 100 V), expect near 58.2 V, since DAC is at 5.825 V. Piezo Error = -9.3 V. 17-03-17 23:40:39.388 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.7 um, Read 10 ADC samples: Avg = 36492 (-173.9 uncal um), Error = 0.9 uncal um, Median = 36493 (-173.9 uncal um), StdDev = 7 (0.0 uncal um), Range = 23 (0.1 uncal um), Min = 36481 (-173.8 uncal um), Max = 36504 (-173.9 uncal um), Pos Noise = 12 (0.1 uncal um), Neg Noise = 11 (0.1 uncal um) 17-03-17 23:40:39.388 -07 000000610 INF: Z Motor: ADC noise = 12, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36492, posNoise = 12, negNoise = 11 17-03-17 23:40:39.388 -07 000000610 INF: Z Motor: After move to -0.174745, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:40:39.388 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms) 17-03-17 23:40:39.388 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:40:39.388 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:40:39.388 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:40:39.388 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:40:39.388 -07 000000502 INF: Disarm and arm camera sensor 0: FullImageTriggered start. 17-03-17 23:40:39.388 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:40:39.388 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:40:39.388 -07 000000502 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start. 17-03-17 23:40:39.398 -07 000000502 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms. 17-03-17 23:40:39.398 -07 000000502 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start. 17-03-17 23:40:39.408 -07 000000502 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms. 17-03-17 23:40:39.408 -07 000000502 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms. 17-03-17 23:40:39.408 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:40:39.608 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 192 17-03-17 23:40:39.908 -07 000000433 INF: FPGA: Recv @CAMSNAP img rdy 492 17-03-17 23:40:39.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492 17-03-17 23:40:39.908 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start. 17-03-17 23:40:39.908 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1406045800, 0x0, 314322768) start. 17-03-17 23:40:40.098 -07 000000502 INF: FPGA: Recv @CAMSNAP 685 17-03-17 23:40:40.098 -07 000000547 INF: FPGA: Recv CAMSNAP 17-03-17 23:40:40.098 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 684 ms to get response, and 689 ms overall 17-03-17 23:40:40.498 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1406045800, 0x0, 314322768) end. Duration was 596 ms. 17-03-17 23:40:40.498 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:40:40.508 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:40:40.508 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 600 ms. 17-03-17 23:40:40.598 -07 000000610 INF: ComputeBrenner start 17-03-17 23:40:40.608 -07 000000610 INF: Image SNR check: start 17-03-17 23:40:40.618 -07 000000610 INF: Image SNR check: image is Faint [peak (Max-Min)=21.72] 17-03-17 23:40:40.618 -07 000000610 INF: Scanning Z-Position: -0.172747 17-03-17 23:40:40.618 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37737, sync = True, waitForSettling = True) 17-03-17 23:40:40.618 -07 000000610 INF: Z Motor: Moving to -0.172749 mm, started at -0.174756 mm, distance = 2.01 um 17-03-17 23:40:40.618 -07 000000610 INF: FPGA: Xmit ZDACW 37737\n [Z Motor] 17-03-17 23:40:40.618 -07 000000623 INF: FPGA: Recv ZDACW 17-03-17 23:40:40.628 -07 000000610 INF: FPGA: 'ZDACW 37737' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:40:40.628 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:40:40.628 -07 000000541 INF: FPGA: Recv ZDACR 37737 17-03-17 23:40:40.638 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:40.638 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:40:40.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:40.788 -07 000000618 INF: FPGA: Recv ZSGSRD 36183 17-03-17 23:40:40.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:40:40.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:40.798 -07 000000512 INF: FPGA: Recv ZSGSRD 36183 17-03-17 23:40:40.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:40.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:40.808 -07 000000482 INF: FPGA: Recv ZSGSRD 36180 17-03-17 23:40:40.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:40.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:40.818 -07 000000475 INF: FPGA: Recv ZSGSRD 36181 17-03-17 23:40:40.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:40.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:40.828 -07 000000409 INF: FPGA: Recv ZSGSRD 36179 17-03-17 23:40:40.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:40.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:40.838 -07 000000480 INF: FPGA: Recv ZSGSRD 36182 17-03-17 23:40:40.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:40.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:40.848 -07 000000576 INF: FPGA: Recv ZSGSRD 36182 17-03-17 23:40:40.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:40.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:40.858 -07 000000482 INF: FPGA: Recv ZSGSRD 36185 17-03-17 23:40:40.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:40.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:40.868 -07 000000459 INF: FPGA: Recv ZSGSRD 36182 17-03-17 23:40:40.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:40.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:40.878 -07 000000541 INF: FPGA: Recv ZSGSRD 36176 17-03-17 23:40:40.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:40.888 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:40:40.888 -07 000000480 INF: FPGA: Recv ZPIEZORD 31855 17-03-17 23:40:40.898 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:40.898 -07 000000610 INF: Z Motor: Piezo is near 48.1 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.758 V. Piezo Error = -9.5 V. 17-03-17 23:40:40.898 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.7 um, Read 10 ADC samples: Avg = 36181 (-171.9 uncal um), Error = 0.9 uncal um, Median = 36182 (-171.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36176 (-171.8 uncal um), Max = 36185 (-171.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-17 23:40:40.898 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36181, posNoise = 4, negNoise = 5 17-03-17 23:40:40.898 -07 000000610 INF: Z Motor: After move to -0.172749, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:40:40.898 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms) 17-03-17 23:40:40.898 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:40:40.898 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:40:40.898 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:40:40.898 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:40:40.898 -07 000000541 INF: Disarm and arm camera sensor 0: FullImageTriggered start. 17-03-17 23:40:40.898 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:40:40.898 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:40:40.898 -07 000000541 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start. 17-03-17 23:40:40.908 -07 000000541 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms. 17-03-17 23:40:40.908 -07 000000541 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start. 17-03-17 23:40:40.918 -07 000000541 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 9 ms. 17-03-17 23:40:40.918 -07 000000541 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 14 ms. 17-03-17 23:40:40.918 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:40:41.118 -07 000000547 INF: FPGA: Recv @CAMSNAP turning led on 192 17-03-17 23:40:41.418 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 492 17-03-17 23:40:41.418 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492 17-03-17 23:40:41.418 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start. 17-03-17 23:40:41.418 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1457648288, 0x0, 314322768) start. 17-03-17 23:40:41.608 -07 000000541 INF: FPGA: Recv @CAMSNAP 685 17-03-17 23:40:41.608 -07 000000561 INF: FPGA: Recv CAMSNAP 17-03-17 23:40:41.608 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 682 ms to get response, and 689 ms overall 17-03-17 23:40:41.998 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1457648288, 0x0, 314322768) end. Duration was 586 ms. 17-03-17 23:40:41.998 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:40:42.008 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:40:42.008 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms. 17-03-17 23:40:42.078 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 3.996267, 17-03-17 23:40:42.088 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:40:42.088 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:40:42.218 -07 000000610 INF: ComputeBrenner start 17-03-17 23:40:42.238 -07 000000610 INF: Image SNR check: start 17-03-17 23:40:42.238 -07 000000610 INF: Image SNR check: image is Faint [peak (Max-Min)=21.98] 17-03-17 23:40:42.238 -07 000000610 INF: Scanning Z-Position: -0.170747 17-03-17 23:40:42.248 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37300, sync = True, waitForSettling = True) 17-03-17 23:40:42.248 -07 000000610 INF: Z Motor: Moving to -0.170748 mm, started at -0.172758 mm, distance = 2.01 um 17-03-17 23:40:42.248 -07 000000610 INF: FPGA: Xmit ZDACW 37300\n [Z Motor] 17-03-17 23:40:42.248 -07 000000512 INF: FPGA: Recv ZDACW 17-03-17 23:40:42.258 -07 000000610 INF: FPGA: 'ZDACW 37300' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:42.258 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:40:42.258 -07 000000576 INF: FPGA: Recv ZDACR 37300 17-03-17 23:40:42.268 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:42.268 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:40:42.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:42.418 -07 000000475 INF: FPGA: Recv ZSGSRD 35870 17-03-17 23:40:42.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:42.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:42.428 -07 000000512 INF: FPGA: Recv ZSGSRD 35871 17-03-17 23:40:42.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:42.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:42.448 -07 000000475 INF: FPGA: Recv ZSGSRD 35871 17-03-17 23:40:42.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-17 23:40:42.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:42.458 -07 000000438 INF: FPGA: Recv ZSGSRD 35869 17-03-17 23:40:42.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:42.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:42.468 -07 000000482 INF: FPGA: Recv ZSGSRD 35867 17-03-17 23:40:42.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:42.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:42.478 -07 000000502 INF: FPGA: Recv ZSGSRD 35870 17-03-17 23:40:42.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:42.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:42.488 -07 000000547 INF: FPGA: Recv ZSGSRD 35870 17-03-17 23:40:42.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:42.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:42.498 -07 000000459 INF: FPGA: Recv ZSGSRD 35870 17-03-17 23:40:42.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:42.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:42.508 -07 000000541 INF: FPGA: Recv ZSGSRD 35871 17-03-17 23:40:42.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:42.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:42.518 -07 000000482 INF: FPGA: Recv ZSGSRD 35871 17-03-17 23:40:42.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:42.528 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:40:42.528 -07 000000475 INF: FPGA: Recv ZPIEZORD 31488 17-03-17 23:40:42.538 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:42.538 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.692 V. Piezo Error = -9.6 V. 17-03-17 23:40:42.538 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.7 um, Read 10 ADC samples: Avg = 35870 (-169.9 uncal um), Error = 0.9 uncal um, Median = 35870 (-169.9 uncal um), StdDev = 1 (0.0 uncal um), Range = 4 (0.0 uncal um), Min = 35867 (-169.9 uncal um), Max = 35871 (-169.9 uncal um), Pos Noise = 1 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um) 17-03-17 23:40:42.538 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35870, posNoise = 1, negNoise = 3 17-03-17 23:40:42.538 -07 000000610 INF: Z Motor: After move to -0.170748, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:40:42.538 -07 000000610 INF: Z Motor: MoveAbsStepped took 290 ms) 17-03-17 23:40:42.538 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:40:42.538 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:40:42.538 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:40:42.538 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:40:42.538 -07 000000627 INF: Disarm and arm camera sensor 0: FullImageTriggered start. 17-03-17 23:40:42.538 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:40:42.548 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:40:42.548 -07 000000627 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start. 17-03-17 23:40:42.548 -07 000000627 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms. 17-03-17 23:40:42.548 -07 000000627 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start. 17-03-17 23:40:42.558 -07 000000627 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms. 17-03-17 23:40:42.558 -07 000000627 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms. 17-03-17 23:40:42.558 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:40:42.758 -07 000000547 INF: FPGA: Recv @CAMSNAP turning led on 192 17-03-17 23:40:43.058 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 492 17-03-17 23:40:43.058 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492 17-03-17 23:40:43.058 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start. 17-03-17 23:40:43.058 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) start. 17-03-17 23:40:43.248 -07 000000482 INF: FPGA: Recv @CAMSNAP 685 17-03-17 23:40:43.248 -07 000000486 INF: FPGA: Recv CAMSNAP 17-03-17 23:40:43.248 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 686 ms to get response, and 689 ms overall 17-03-17 23:40:43.648 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) end. Duration was 586 ms. 17-03-17 23:40:43.648 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:40:43.648 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:40:43.648 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 590 ms. 17-03-17 23:40:43.848 -07 000000610 INF: ComputeBrenner start 17-03-17 23:40:43.858 -07 000000610 INF: Image SNR check: start 17-03-17 23:40:43.868 -07 000000610 INF: Image SNR check: image is Faint [peak (Max-Min)=22.06] 17-03-17 23:40:43.868 -07 000000610 INF: Scanning Z-Position: -0.168747 17-03-17 23:40:43.868 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36863, sync = True, waitForSettling = True) 17-03-17 23:40:43.868 -07 000000610 INF: Z Motor: Moving to -0.168748 mm, started at -0.170760 mm, distance = 2.01 um 17-03-17 23:40:43.868 -07 000000610 INF: FPGA: Xmit ZDACW 36863\n [Z Motor] 17-03-17 23:40:43.868 -07 000000438 INF: FPGA: Recv ZDACW 17-03-17 23:40:43.878 -07 000000610 INF: FPGA: 'ZDACW 36863' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:40:43.878 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:40:43.878 -07 000000547 INF: FPGA: Recv ZDACR 36863 17-03-17 23:40:43.888 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:43.888 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:40:44.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:44.038 -07 000000482 INF: FPGA: Recv ZSGSRD 35561 17-03-17 23:40:44.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:40:44.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:44.048 -07 000000618 INF: FPGA: Recv ZSGSRD 35558 17-03-17 23:40:44.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:44.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:44.058 -07 000000512 INF: FPGA: Recv ZSGSRD 35561 17-03-17 23:40:44.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:44.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:44.068 -07 000000433 INF: FPGA: Recv ZSGSRD 35557 17-03-17 23:40:44.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:44.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:44.078 -07 000000547 INF: FPGA: Recv ZSGSRD 35559 17-03-17 23:40:44.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:44.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:44.088 -07 000000627 INF: FPGA: Recv ZSGSRD 35557 17-03-17 23:40:44.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:44.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:44.098 -07 000000618 INF: FPGA: Recv ZSGSRD 35555 17-03-17 23:40:44.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:44.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:44.108 -07 000000459 INF: FPGA: Recv ZSGSRD 35560 17-03-17 23:40:44.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:44.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:44.118 -07 000000409 INF: FPGA: Recv ZSGSRD 35556 17-03-17 23:40:44.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:44.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:44.128 -07 000000547 INF: FPGA: Recv ZSGSRD 35561 17-03-17 23:40:44.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:44.138 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:40:44.138 -07 000000482 INF: FPGA: Recv ZPIEZORD 31071 17-03-17 23:40:44.148 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:44.148 -07 000000610 INF: Z Motor: Piezo is near 46.4 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.625 V. Piezo Error = -9.9 V. 17-03-17 23:40:44.148 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.7 um, Read 10 ADC samples: Avg = 35558 (-167.9 uncal um), Error = 0.9 uncal um, Median = 35558 (-167.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35555 (-167.9 uncal um), Max = 35561 (-167.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um) 17-03-17 23:40:44.148 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35558, posNoise = 3, negNoise = 3 17-03-17 23:40:44.148 -07 000000610 INF: Z Motor: After move to -0.168748, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:40:44.148 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms) 17-03-17 23:40:44.148 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:40:44.148 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:40:44.148 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:40:44.148 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:40:44.148 -07 000000627 INF: Disarm and arm camera sensor 0: FullImageTriggered start. 17-03-17 23:40:44.148 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:40:44.148 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:40:44.148 -07 000000627 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start. 17-03-17 23:40:44.158 -07 000000627 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms. 17-03-17 23:40:44.158 -07 000000627 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start. 17-03-17 23:40:44.168 -07 000000627 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms. 17-03-17 23:40:44.168 -07 000000627 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms. 17-03-17 23:40:44.168 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:40:44.368 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 192 17-03-17 23:40:44.668 -07 000000623 INF: FPGA: Recv @CAMSNAP img rdy 492 17-03-17 23:40:44.668 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492 17-03-17 23:40:44.668 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start. 17-03-17 23:40:44.668 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1406045800, 0x0, 314322768) start. 17-03-17 23:40:44.858 -07 000000475 INF: FPGA: Recv @CAMSNAP 685 17-03-17 23:40:44.858 -07 000000433 INF: FPGA: Recv CAMSNAP 17-03-17 23:40:44.858 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 684 ms to get response, and 689 ms overall 17-03-17 23:40:45.258 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1406045800, 0x0, 314322768) end. Duration was 587 ms. 17-03-17 23:40:45.258 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:40:45.258 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:40:45.258 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 592 ms. 17-03-17 23:40:45.458 -07 000000610 INF: ComputeBrenner start 17-03-17 23:40:45.468 -07 000000610 INF: Image SNR check: start 17-03-17 23:40:45.478 -07 000000610 INF: Image SNR check: image is Faint [peak (Max-Min)=21.67] 17-03-17 23:40:45.478 -07 000000610 INF: Scanning Z-Position: -0.166747 17-03-17 23:40:45.478 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36426, sync = True, waitForSettling = True) 17-03-17 23:40:45.478 -07 000000610 INF: Z Motor: Moving to -0.166748 mm, started at -0.168755 mm, distance = 2.01 um 17-03-17 23:40:45.478 -07 000000610 INF: FPGA: Xmit ZDACW 36426\n [Z Motor] 17-03-17 23:40:45.478 -07 000000541 INF: FPGA: Recv ZDACW 17-03-17 23:40:45.488 -07 000000610 INF: FPGA: 'ZDACW 36426' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:40:45.488 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:40:45.488 -07 000000480 INF: FPGA: Recv ZDACR 36426 17-03-17 23:40:45.498 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:45.498 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:40:45.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:45.648 -07 000000459 INF: FPGA: Recv ZSGSRD 35249 17-03-17 23:40:45.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:40:45.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:45.658 -07 000000618 INF: FPGA: Recv ZSGSRD 35255 17-03-17 23:40:45.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:45.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:45.668 -07 000000486 INF: FPGA: Recv ZSGSRD 35246 17-03-17 23:40:45.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:45.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:45.678 -07 000000561 INF: FPGA: Recv ZSGSRD 35247 17-03-17 23:40:45.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:45.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:45.688 -07 000000627 INF: FPGA: Recv ZSGSRD 35249 17-03-17 23:40:45.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:45.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:45.698 -07 000000482 INF: FPGA: Recv ZSGSRD 35249 17-03-17 23:40:45.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:45.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:45.708 -07 000000618 INF: FPGA: Recv ZSGSRD 35250 17-03-17 23:40:45.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:45.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:45.718 -07 000000438 INF: FPGA: Recv ZSGSRD 35245 17-03-17 23:40:45.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:45.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:45.728 -07 000000541 INF: FPGA: Recv ZSGSRD 35247 17-03-17 23:40:45.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:45.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:45.738 -07 000000448 INF: FPGA: Recv ZSGSRD 35250 17-03-17 23:40:45.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:45.748 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:40:45.748 -07 000000502 INF: FPGA: Recv ZPIEZORD 30664 17-03-17 23:40:45.758 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:40:45.758 -07 000000610 INF: Z Motor: Piezo is near 45.5 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.558 V. Piezo Error = -10.1 V. 17-03-17 23:40:45.758 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.7 um, Read 10 ADC samples: Avg = 35249 (-165.9 uncal um), Error = 0.8 uncal um, Median = 35249 (-165.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 35245 (-165.9 uncal um), Max = 35255 (-165.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um) 17-03-17 23:40:45.758 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35249, posNoise = 6, negNoise = 4 17-03-17 23:40:45.758 -07 000000610 INF: Z Motor: After move to -0.166748, error = -0.000023, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:40:45.758 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms) 17-03-17 23:40:45.758 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:40:45.758 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:40:45.758 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:40:45.758 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:40:45.758 -07 000000547 INF: Disarm and arm camera sensor 0: FullImageTriggered start. 17-03-17 23:40:45.758 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:40:45.758 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:40:45.758 -07 000000547 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start. 17-03-17 23:40:45.758 -07 000000547 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms. 17-03-17 23:40:45.758 -07 000000547 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start. 17-03-17 23:40:45.778 -07 000000547 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms. 17-03-17 23:40:45.778 -07 000000547 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms. 17-03-17 23:40:45.778 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:40:45.978 -07 000000459 INF: FPGA: Recv @CAMSNAP turning led on 192 17-03-17 23:40:46.278 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 492 17-03-17 23:40:46.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492 17-03-17 23:40:46.278 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start. 17-03-17 23:40:46.278 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1457648288, 0x0, 314322768) start. 17-03-17 23:40:46.468 -07 000000486 INF: FPGA: Recv @CAMSNAP 685 17-03-17 23:40:46.468 -07 000000561 INF: FPGA: Recv CAMSNAP 17-03-17 23:40:46.468 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 683 ms to get response, and 689 ms overall 17-03-17 23:40:46.858 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1457648288, 0x0, 314322768) end. Duration was 587 ms. 17-03-17 23:40:46.868 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:40:46.868 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:40:46.868 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 592 ms. 17-03-17 23:40:47.078 -07 000000610 INF: ComputeBrenner start 17-03-17 23:40:47.088 -07 000000610 INF: Image SNR check: start 17-03-17 23:40:47.088 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:40:47.088 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:40:47.098 -07 000000610 INF: Image SNR check: image is Faint [peak (Max-Min)=22.32] 17-03-17 23:40:47.098 -07 000000610 INF: Scanning Z-Position: -0.164747 17-03-17 23:40:47.098 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 35989, sync = True, waitForSettling = True) 17-03-17 23:40:47.098 -07 000000610 INF: Z Motor: Moving to -0.164747 mm, started at -0.166770 mm, distance = 2.02 um 17-03-17 23:40:47.098 -07 000000610 INF: FPGA: Xmit ZDACW 35989\n [Z Motor] 17-03-17 23:40:47.098 -07 000000480 INF: FPGA: Recv ZDACW 17-03-17 23:40:47.108 -07 000000610 INF: FPGA: 'ZDACW 35989' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-17 23:40:47.108 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:40:47.108 -07 000000512 INF: FPGA: Recv ZDACR 35989 17-03-17 23:40:47.118 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:47.118 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:40:47.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:47.268 -07 000000541 INF: FPGA: Recv ZSGSRD 34940 17-03-17 23:40:47.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:47.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:47.278 -07 000000480 INF: FPGA: Recv ZSGSRD 34936 17-03-17 23:40:47.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:47.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:47.288 -07 000000576 INF: FPGA: Recv ZSGSRD 34937 17-03-17 23:40:47.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:47.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:47.298 -07 000000623 INF: FPGA: Recv ZSGSRD 34932 17-03-17 23:40:47.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:47.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:47.308 -07 000000433 INF: FPGA: Recv ZSGSRD 34933 17-03-17 23:40:47.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:47.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:47.318 -07 000000502 INF: FPGA: Recv ZSGSRD 34939 17-03-17 23:40:47.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:47.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:47.328 -07 000000459 INF: FPGA: Recv ZSGSRD 34934 17-03-17 23:40:47.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:47.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:47.338 -07 000000618 INF: FPGA: Recv ZSGSRD 34937 17-03-17 23:40:47.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:47.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:47.348 -07 000000547 INF: FPGA: Recv ZSGSRD 34934 17-03-17 23:40:47.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:47.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:47.358 -07 000000480 INF: FPGA: Recv ZSGSRD 34938 17-03-17 23:40:47.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:47.368 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:40:47.368 -07 000000627 INF: FPGA: Recv ZPIEZORD 30297 17-03-17 23:40:47.378 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:47.378 -07 000000610 INF: Z Motor: Piezo is near 44.7 V (nominally 0 to 100 V), expect near 54.9 V, since DAC is at 5.492 V. Piezo Error = -10.2 V. 17-03-17 23:40:47.378 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -164.7 um, Read 10 ADC samples: Avg = 34936 (-163.9 uncal um), Error = 0.8 uncal um, Median = 34936 (-163.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 34932 (-163.9 uncal um), Max = 34940 (-163.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um) 17-03-17 23:40:47.378 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34936, posNoise = 4, negNoise = 4 17-03-17 23:40:47.378 -07 000000610 INF: Z Motor: After move to -0.164747, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:40:47.378 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms) 17-03-17 23:40:47.378 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:40:47.378 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:40:47.378 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:40:47.378 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:40:47.378 -07 000000623 INF: Disarm and arm camera sensor 0: FullImageTriggered start. 17-03-17 23:40:47.378 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:40:47.378 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:40:47.378 -07 000000623 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start. 17-03-17 23:40:47.388 -07 000000623 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms. 17-03-17 23:40:47.388 -07 000000623 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start. 17-03-17 23:40:47.398 -07 000000623 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms. 17-03-17 23:40:47.398 -07 000000623 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms. 17-03-17 23:40:47.398 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:40:47.538 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 4.004458, 17-03-17 23:40:47.598 -07 000000541 INF: FPGA: Recv @CAMSNAP turning led on 193 17-03-17 23:40:47.898 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 493 17-03-17 23:40:47.898 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 493 17-03-17 23:40:47.898 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start. 17-03-17 23:40:47.898 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) start. 17-03-17 23:40:48.088 -07 000000576 INF: FPGA: Recv @CAMSNAP 685 17-03-17 23:40:48.088 -07 000000561 INF: FPGA: Recv CAMSNAP 17-03-17 23:40:48.088 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 685 ms to get response, and 689 ms overall 17-03-17 23:40:48.488 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) end. Duration was 586 ms. 17-03-17 23:40:48.488 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:40:48.488 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:40:48.488 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms. 17-03-17 23:40:48.688 -07 000000610 INF: ComputeBrenner start 17-03-17 23:40:48.698 -07 000000610 INF: Image SNR check: start 17-03-17 23:40:48.708 -07 000000610 INF: Image SNR check: image is Faint [peak (Max-Min)=22.28] 17-03-17 23:40:48.708 -07 000000610 INF: Scanning Z-Position: -0.162747 17-03-17 23:40:48.708 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 35552, sync = True, waitForSettling = True) 17-03-17 23:40:48.708 -07 000000610 INF: Z Motor: Moving to -0.162747 mm, started at -0.164760 mm, distance = 2.01 um 17-03-17 23:40:48.708 -07 000000610 INF: FPGA: Xmit ZDACW 35552\n [Z Motor] 17-03-17 23:40:48.708 -07 000000512 INF: FPGA: Recv ZDACW 17-03-17 23:40:48.718 -07 000000610 INF: FPGA: 'ZDACW 35552' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:40:48.718 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:40:48.718 -07 000000618 INF: FPGA: Recv ZDACR 35552 17-03-17 23:40:48.728 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:48.728 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:40:48.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:48.878 -07 000000482 INF: FPGA: Recv ZSGSRD 34631 17-03-17 23:40:48.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:40:48.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:48.888 -07 000000576 INF: FPGA: Recv ZSGSRD 34624 17-03-17 23:40:48.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:48.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:48.898 -07 000000438 INF: FPGA: Recv ZSGSRD 34631 17-03-17 23:40:48.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:48.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:48.908 -07 000000512 INF: FPGA: Recv ZSGSRD 34626 17-03-17 23:40:48.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:48.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:48.918 -07 000000547 INF: FPGA: Recv ZSGSRD 34620 17-03-17 23:40:48.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:48.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:48.928 -07 000000486 INF: FPGA: Recv ZSGSRD 34625 17-03-17 23:40:48.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:48.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:48.938 -07 000000576 INF: FPGA: Recv ZSGSRD 34627 17-03-17 23:40:48.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:48.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:48.948 -07 000000502 INF: FPGA: Recv ZSGSRD 34625 17-03-17 23:40:48.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:48.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:48.958 -07 000000541 INF: FPGA: Recv ZSGSRD 34622 17-03-17 23:40:48.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:48.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:48.968 -07 000000482 INF: FPGA: Recv ZSGSRD 34625 17-03-17 23:40:48.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:48.978 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:40:48.978 -07 000000448 INF: FPGA: Recv ZPIEZORD 29912 17-03-17 23:40:48.988 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:48.988 -07 000000610 INF: Z Motor: Piezo is near 43.9 V (nominally 0 to 100 V), expect near 54.2 V, since DAC is at 5.425 V. Piezo Error = -10.3 V. 17-03-17 23:40:48.988 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -162.7 um, Read 10 ADC samples: Avg = 34626 (-161.9 uncal um), Error = 0.8 uncal um, Median = 34625 (-161.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 34620 (-161.9 uncal um), Max = 34631 (-161.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um) 17-03-17 23:40:48.988 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34626, posNoise = 5, negNoise = 6 17-03-17 23:40:48.988 -07 000000610 INF: Z Motor: After move to -0.162747, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:40:48.988 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms) 17-03-17 23:40:48.988 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:40:48.988 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:40:48.988 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:40:48.988 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:40:48.988 -07 000000482 INF: Disarm and arm camera sensor 0: FullImageTriggered start. 17-03-17 23:40:48.988 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:40:48.988 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:40:48.988 -07 000000482 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start. 17-03-17 23:40:48.988 -07 000000482 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms. 17-03-17 23:40:48.988 -07 000000482 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start. 17-03-17 23:40:49.008 -07 000000482 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms. 17-03-17 23:40:49.008 -07 000000482 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 14 ms. 17-03-17 23:40:49.008 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:40:49.208 -07 000000482 INF: FPGA: Recv @CAMSNAP turning led on 192 17-03-17 23:40:49.508 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 492 17-03-17 23:40:49.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492 17-03-17 23:40:49.508 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start. 17-03-17 23:40:49.508 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1406045800, 0x0, 314322768) start. 17-03-17 23:40:49.698 -07 000000502 INF: FPGA: Recv @CAMSNAP 685 17-03-17 23:40:49.698 -07 000000576 INF: FPGA: Recv CAMSNAP 17-03-17 23:40:49.698 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 684 ms to get response, and 689 ms overall 17-03-17 23:40:50.098 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1406045800, 0x0, 314322768) end. Duration was 587 ms. 17-03-17 23:40:50.098 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:40:50.098 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:40:50.098 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 592 ms. 17-03-17 23:40:50.198 -07 000000610 INF: ComputeBrenner start 17-03-17 23:40:50.208 -07 000000610 INF: Image SNR check: start 17-03-17 23:40:50.218 -07 000000610 INF: Image SNR check: image is Faint [peak (Max-Min)=22.09] 17-03-17 23:40:50.218 -07 000000610 INF: Scanning Z-Position: -0.160747 17-03-17 23:40:50.218 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 35115, sync = True, waitForSettling = True) 17-03-17 23:40:50.218 -07 000000610 INF: Z Motor: Moving to -0.160746 mm, started at -0.162768 mm, distance = 2.02 um 17-03-17 23:40:50.218 -07 000000610 INF: FPGA: Xmit ZDACW 35115\n [Z Motor] 17-03-17 23:40:50.218 -07 000000618 INF: FPGA: Recv ZDACW 17-03-17 23:40:50.228 -07 000000610 INF: FPGA: 'ZDACW 35115' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:40:50.228 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:40:50.228 -07 000000576 INF: FPGA: Recv ZDACR 35115 17-03-17 23:40:50.238 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:50.238 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:40:50.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:50.388 -07 000000512 INF: FPGA: Recv ZSGSRD 34317 17-03-17 23:40:50.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:40:50.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:50.398 -07 000000480 INF: FPGA: Recv ZSGSRD 34315 17-03-17 23:40:50.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:50.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:50.408 -07 000000502 INF: FPGA: Recv ZSGSRD 34312 17-03-17 23:40:50.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:50.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:50.418 -07 000000627 INF: FPGA: Recv ZSGSRD 34315 17-03-17 23:40:50.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:40:50.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:50.428 -07 000000475 INF: FPGA: Recv ZSGSRD 34312 17-03-17 23:40:50.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:50.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:50.438 -07 000000561 INF: FPGA: Recv ZSGSRD 34315 17-03-17 23:40:50.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:50.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:50.448 -07 000000623 INF: FPGA: Recv ZSGSRD 34310 17-03-17 23:40:50.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:50.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:50.458 -07 000000576 INF: FPGA: Recv ZSGSRD 34311 17-03-17 23:40:50.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:50.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:50.468 -07 000000482 INF: FPGA: Recv ZSGSRD 34311 17-03-17 23:40:50.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:50.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:50.478 -07 000000475 INF: FPGA: Recv ZSGSRD 34311 17-03-17 23:40:50.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:50.488 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:40:50.488 -07 000000480 INF: FPGA: Recv ZPIEZORD 29591 17-03-17 23:40:50.498 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:50.498 -07 000000610 INF: Z Motor: Piezo is near 43.2 V (nominally 0 to 100 V), expect near 53.6 V, since DAC is at 5.358 V. Piezo Error = -10.4 V. 17-03-17 23:40:50.498 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -160.7 um, Read 10 ADC samples: Avg = 34313 (-159.9 uncal um), Error = 0.8 uncal um, Median = 34312 (-159.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 34310 (-159.9 uncal um), Max = 34317 (-159.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um) 17-03-17 23:40:50.498 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34313, posNoise = 4, negNoise = 3 17-03-17 23:40:50.498 -07 000000610 INF: Z Motor: After move to -0.160746, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:40:50.498 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms) 17-03-17 23:40:50.498 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:40:50.498 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:40:50.498 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:40:50.498 -07 000000475 INF: Disarm and arm camera sensor 0: FullImageTriggered start. 17-03-17 23:40:50.498 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:40:50.498 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:40:50.498 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:40:50.498 -07 000000475 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start. 17-03-17 23:40:50.498 -07 000000475 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms. 17-03-17 23:40:50.498 -07 000000475 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start. 17-03-17 23:40:50.508 -07 000000475 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 8 ms. 17-03-17 23:40:50.508 -07 000000475 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 12 ms. 17-03-17 23:40:50.518 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:40:50.708 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 192 17-03-17 23:40:51.008 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 492 17-03-17 23:40:51.008 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492 17-03-17 23:40:51.008 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start. 17-03-17 23:40:51.008 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1457648288, 0x0, 314322768) start. 17-03-17 23:40:51.208 -07 000000627 INF: FPGA: Recv @CAMSNAP 685 17-03-17 23:40:51.208 -07 000000547 INF: FPGA: Recv CAMSNAP 17-03-17 23:40:51.208 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 681 ms to get response, and 689 ms overall 17-03-17 23:40:51.598 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1457648288, 0x0, 314322768) end. Duration was 585 ms. 17-03-17 23:40:51.598 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:40:51.598 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:40:51.598 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 590 ms. 17-03-17 23:40:51.808 -07 000000610 INF: ComputeBrenner start 17-03-17 23:40:51.818 -07 000000610 INF: Image SNR check: start 17-03-17 23:40:51.828 -07 000000610 INF: Image SNR check: image is Faint [peak (Max-Min)=22.03] 17-03-17 23:40:51.828 -07 000000610 INF: Scanning Z-Position: -0.158747 17-03-17 23:40:51.828 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 34678, sync = True, waitForSettling = True) 17-03-17 23:40:51.828 -07 000000610 INF: Z Motor: Moving to -0.158746 mm, started at -0.160757 mm, distance = 2.01 um 17-03-17 23:40:51.828 -07 000000610 INF: FPGA: Xmit ZDACW 34678\n [Z Motor] 17-03-17 23:40:51.828 -07 000000547 INF: FPGA: Recv ZDACW 17-03-17 23:40:51.838 -07 000000610 INF: FPGA: 'ZDACW 34678' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 23:40:51.838 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:40:51.838 -07 000000512 INF: FPGA: Recv ZDACR 34678 17-03-17 23:40:51.848 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:51.848 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:40:51.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:51.998 -07 000000576 INF: FPGA: Recv ZSGSRD 34005 17-03-17 23:40:52.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:40:52.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:52.008 -07 000000627 INF: FPGA: Recv ZSGSRD 34004 17-03-17 23:40:52.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:52.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:52.018 -07 000000475 INF: FPGA: Recv ZSGSRD 33999 17-03-17 23:40:52.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:52.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:52.028 -07 000000482 INF: FPGA: Recv ZSGSRD 33999 17-03-17 23:40:52.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:52.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:52.038 -07 000000438 INF: FPGA: Recv ZSGSRD 34007 17-03-17 23:40:52.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:52.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:52.048 -07 000000409 INF: FPGA: Recv ZSGSRD 34006 17-03-17 23:40:52.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:52.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:52.058 -07 000000541 INF: FPGA: Recv ZSGSRD 34003 17-03-17 23:40:52.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:52.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:52.068 -07 000000623 INF: FPGA: Recv ZSGSRD 33996 17-03-17 23:40:52.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:52.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:52.078 -07 000000482 INF: FPGA: Recv ZSGSRD 34002 17-03-17 23:40:52.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:52.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:52.088 -07 000000627 INF: FPGA: Recv ZSGSRD 34006 17-03-17 23:40:52.088 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:40:52.088 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:40:52.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:52.098 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:40:52.098 -07 000000482 INF: FPGA: Recv ZPIEZORD 29228 17-03-17 23:40:52.108 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:52.108 -07 000000610 INF: Z Motor: Piezo is near 42.4 V (nominally 0 to 100 V), expect near 52.9 V, since DAC is at 5.292 V. Piezo Error = -10.5 V. 17-03-17 23:40:52.108 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -158.7 um, Read 10 ADC samples: Avg = 34003 (-157.9 uncal um), Error = 0.8 uncal um, Median = 34004 (-157.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 33996 (-157.9 uncal um), Max = 34007 (-157.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um) 17-03-17 23:40:52.108 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34003, posNoise = 4, negNoise = 7 17-03-17 23:40:52.108 -07 000000610 INF: Z Motor: After move to -0.158746, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:40:52.108 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms) 17-03-17 23:40:52.108 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:40:52.108 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:40:52.108 -07 000000409 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:40:52.108 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:40:52.108 -07 000000433 INF: Disarm and arm camera sensor 0: FullImageTriggered start. 17-03-17 23:40:52.108 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:40:52.108 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:40:52.108 -07 000000433 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start. 17-03-17 23:40:52.118 -07 000000433 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms. 17-03-17 23:40:52.118 -07 000000433 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start. 17-03-17 23:40:52.128 -07 000000433 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 9 ms. 17-03-17 23:40:52.128 -07 000000433 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 13 ms. 17-03-17 23:40:52.128 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:40:52.328 -07 000000433 INF: FPGA: Recv @CAMSNAP turning led on 192 17-03-17 23:40:52.628 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 492 17-03-17 23:40:52.628 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492 17-03-17 23:40:52.628 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start. 17-03-17 23:40:52.628 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1102499440, 0x0, 314322768) start. 17-03-17 23:40:52.818 -07 000000541 INF: FPGA: Recv @CAMSNAP 685 17-03-17 23:40:52.818 -07 000000512 INF: FPGA: Recv CAMSNAP 17-03-17 23:40:52.818 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 683 ms to get response, and 689 ms overall 17-03-17 23:40:52.898 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 3.973092, 17-03-17 23:40:53.208 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1102499440, 0x0, 314322768) end. Duration was 584 ms. 17-03-17 23:40:53.208 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:40:53.218 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:40:53.218 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 589 ms. 17-03-17 23:40:53.418 -07 000000610 INF: ComputeBrenner start 17-03-17 23:40:53.428 -07 000000610 INF: Image SNR check: start 17-03-17 23:40:53.438 -07 000000610 INF: Image SNR check: image is Faint [peak (Max-Min)=22.31] 17-03-17 23:40:53.438 -07 000000610 INF: Scanning Z-Position: -0.156747 17-03-17 23:40:53.438 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 34241, sync = True, waitForSettling = True) 17-03-17 23:40:53.438 -07 000000610 INF: Z Motor: Moving to -0.156745 mm, started at -0.158766 mm, distance = 2.02 um 17-03-17 23:40:53.438 -07 000000610 INF: FPGA: Xmit ZDACW 34241\n [Z Motor] 17-03-17 23:40:53.438 -07 000000448 INF: FPGA: Recv ZDACW 17-03-17 23:40:53.448 -07 000000610 INF: FPGA: 'ZDACW 34241' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:40:53.448 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:40:53.448 -07 000000480 INF: FPGA: Recv ZDACR 34241 17-03-17 23:40:53.458 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:53.458 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:40:53.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:53.608 -07 000000618 INF: FPGA: Recv ZSGSRD 33691 17-03-17 23:40:53.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:40:53.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:53.618 -07 000000475 INF: FPGA: Recv ZSGSRD 33693 17-03-17 23:40:53.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:53.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:53.628 -07 000000486 INF: FPGA: Recv ZSGSRD 33687 17-03-17 23:40:53.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:53.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:53.638 -07 000000438 INF: FPGA: Recv ZSGSRD 33685 17-03-17 23:40:53.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:53.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:53.648 -07 000000512 INF: FPGA: Recv ZSGSRD 33692 17-03-17 23:40:53.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:53.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:53.658 -07 000000618 INF: FPGA: Recv ZSGSRD 33691 17-03-17 23:40:53.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:53.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:53.668 -07 000000475 INF: FPGA: Recv ZSGSRD 33688 17-03-17 23:40:53.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:53.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:53.678 -07 000000459 INF: FPGA: Recv ZSGSRD 33695 17-03-17 23:40:53.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:53.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:53.688 -07 000000482 INF: FPGA: Recv ZSGSRD 33686 17-03-17 23:40:53.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:53.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:53.698 -07 000000409 INF: FPGA: Recv ZSGSRD 33695 17-03-17 23:40:53.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:53.708 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:40:53.708 -07 000000618 INF: FPGA: Recv ZPIEZORD 28870 17-03-17 23:40:53.718 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:53.718 -07 000000610 INF: Z Motor: Piezo is near 41.7 V (nominally 0 to 100 V), expect near 52.2 V, since DAC is at 5.225 V. Piezo Error = -10.6 V. 17-03-17 23:40:53.718 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -156.7 um, Read 10 ADC samples: Avg = 33690 (-155.9 uncal um), Error = 0.8 uncal um, Median = 33691 (-155.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 33685 (-155.9 uncal um), Max = 33695 (-155.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-17 23:40:53.718 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 33690, posNoise = 5, negNoise = 5 17-03-17 23:40:53.718 -07 000000610 INF: Z Motor: After move to -0.156745, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:40:53.718 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms) 17-03-17 23:40:53.718 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:40:53.718 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:40:53.718 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:40:53.718 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:40:53.718 -07 000000480 INF: Disarm and arm camera sensor 0: FullImageTriggered start. 17-03-17 23:40:53.718 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:40:53.718 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:40:53.718 -07 000000480 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start. 17-03-17 23:40:53.728 -07 000000480 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms. 17-03-17 23:40:53.728 -07 000000480 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start. 17-03-17 23:40:53.738 -07 000000480 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms. 17-03-17 23:40:53.738 -07 000000480 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms. 17-03-17 23:40:53.738 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:40:53.938 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 192 17-03-17 23:40:54.238 -07 000000409 INF: FPGA: Recv @CAMSNAP img rdy 492 17-03-17 23:40:54.238 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492 17-03-17 23:40:54.238 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start. 17-03-17 23:40:54.238 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1154101928, 0x0, 314322768) start. 17-03-17 23:40:54.428 -07 000000486 INF: FPGA: Recv @CAMSNAP 685 17-03-17 23:40:54.438 -07 000000547 INF: FPGA: Recv CAMSNAP 17-03-17 23:40:54.438 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 690 ms to get response, and 693 ms overall 17-03-17 23:40:54.828 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1154101928, 0x0, 314322768) end. Duration was 584 ms. 17-03-17 23:40:54.828 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:40:54.828 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:40:54.828 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 589 ms. 17-03-17 23:40:55.048 -07 000000610 INF: ComputeBrenner start 17-03-17 23:40:55.068 -07 000000610 INF: Image SNR check: start 17-03-17 23:40:55.068 -07 000000610 INF: Image SNR check: image is Faint [peak (Max-Min)=22.05] 17-03-17 23:40:55.068 -07 000000610 INF: Scanning Z-Position: -0.154747 17-03-17 23:40:55.078 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 33804, sync = True, waitForSettling = True) 17-03-17 23:40:55.078 -07 000000610 INF: Z Motor: Moving to -0.154745 mm, started at -0.156755 mm, distance = 2.01 um 17-03-17 23:40:55.078 -07 000000610 INF: FPGA: Xmit ZDACW 33804\n [Z Motor] 17-03-17 23:40:55.078 -07 000000627 INF: FPGA: Recv ZDACW 17-03-17 23:40:55.088 -07 000000610 INF: FPGA: 'ZDACW 33804' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:55.088 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:40:55.088 -07 000000502 INF: FPGA: Recv ZDACR 33804 17-03-17 23:40:55.098 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:55.098 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:40:55.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:55.248 -07 000000576 INF: FPGA: Recv ZSGSRD 33382 17-03-17 23:40:55.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:40:55.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:55.258 -07 000000486 INF: FPGA: Recv ZSGSRD 33380 17-03-17 23:40:55.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:55.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:55.268 -07 000000541 INF: FPGA: Recv ZSGSRD 33377 17-03-17 23:40:55.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:55.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:55.278 -07 000000627 INF: FPGA: Recv ZSGSRD 33378 17-03-17 23:40:55.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:55.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:55.288 -07 000000623 INF: FPGA: Recv ZSGSRD 33379 17-03-17 23:40:55.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:55.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:55.298 -07 000000576 INF: FPGA: Recv ZSGSRD 33379 17-03-17 23:40:55.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:55.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:55.308 -07 000000547 INF: FPGA: Recv ZSGSRD 33379 17-03-17 23:40:55.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:55.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:55.318 -07 000000433 INF: FPGA: Recv ZSGSRD 33375 17-03-17 23:40:55.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:55.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:55.328 -07 000000627 INF: FPGA: Recv ZSGSRD 33382 17-03-17 23:40:55.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:55.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:55.338 -07 000000623 INF: FPGA: Recv ZSGSRD 33376 17-03-17 23:40:55.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:55.348 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:40:55.348 -07 000000576 INF: FPGA: Recv ZPIEZORD 28546 17-03-17 23:40:55.358 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:55.358 -07 000000610 INF: Z Motor: Piezo is near 41.0 V (nominally 0 to 100 V), expect near 51.6 V, since DAC is at 5.158 V. Piezo Error = -10.6 V. 17-03-17 23:40:55.358 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -154.7 um, Read 10 ADC samples: Avg = 33379 (-153.9 uncal um), Error = 0.8 uncal um, Median = 33379 (-153.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 33375 (-153.9 uncal um), Max = 33382 (-153.9 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um) 17-03-17 23:40:55.358 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 33379, posNoise = 3, negNoise = 4 17-03-17 23:40:55.358 -07 000000610 INF: Z Motor: After move to -0.154745, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:40:55.358 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms) 17-03-17 23:40:55.358 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:40:55.358 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:40:55.358 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:40:55.358 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:40:55.358 -07 000000482 INF: Disarm and arm camera sensor 0: FullImageTriggered start. 17-03-17 23:40:55.358 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:40:55.358 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:40:55.358 -07 000000482 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start. 17-03-17 23:40:55.368 -07 000000482 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms. 17-03-17 23:40:55.368 -07 000000482 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start. 17-03-17 23:40:55.368 -07 000000482 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 8 ms. 17-03-17 23:40:55.378 -07 000000482 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 12 ms. 17-03-17 23:40:55.378 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:40:55.578 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 192 17-03-17 23:40:55.868 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 492 17-03-17 23:40:55.868 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492 17-03-17 23:40:55.878 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start. 17-03-17 23:40:55.878 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) start. 17-03-17 23:40:56.068 -07 000000486 INF: FPGA: Recv @CAMSNAP 685 17-03-17 23:40:56.068 -07 000000623 INF: FPGA: Recv CAMSNAP 17-03-17 23:40:56.068 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 682 ms to get response, and 689 ms overall 17-03-17 23:40:56.458 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) end. Duration was 587 ms. 17-03-17 23:40:56.458 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:40:56.468 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:40:56.468 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms. 17-03-17 23:40:56.668 -07 000000610 INF: ComputeBrenner start 17-03-17 23:40:56.678 -07 000000610 INF: Image SNR check: start 17-03-17 23:40:56.688 -07 000000610 INF: Image SNR check: image is Faint [peak (Max-Min)=22.58] 17-03-17 23:40:56.688 -07 000000610 INF: Scanning Z-Position: -0.152747 17-03-17 23:40:56.688 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 33368, sync = True, waitForSettling = True) 17-03-17 23:40:56.688 -07 000000610 INF: Z Motor: Moving to -0.152749 mm, started at -0.154757 mm, distance = 2.01 um 17-03-17 23:40:56.688 -07 000000610 INF: FPGA: Xmit ZDACW 33368\n [Z Motor] 17-03-17 23:40:56.688 -07 000000486 INF: FPGA: Recv ZDACW 17-03-17 23:40:56.698 -07 000000610 INF: FPGA: 'ZDACW 33368' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:40:56.698 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:40:56.698 -07 000000438 INF: FPGA: Recv ZDACR 33368 17-03-17 23:40:56.708 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:56.708 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:40:56.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:56.858 -07 000000627 INF: FPGA: Recv ZSGSRD 33066 17-03-17 23:40:56.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:40:56.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:56.868 -07 000000482 INF: FPGA: Recv ZSGSRD 33070 17-03-17 23:40:56.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:56.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:56.878 -07 000000576 INF: FPGA: Recv ZSGSRD 33064 17-03-17 23:40:56.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:56.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:56.888 -07 000000480 INF: FPGA: Recv ZSGSRD 33073 17-03-17 23:40:56.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:56.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:56.898 -07 000000547 INF: FPGA: Recv ZSGSRD 33066 17-03-17 23:40:56.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:56.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:56.908 -07 000000627 INF: FPGA: Recv ZSGSRD 33069 17-03-17 23:40:56.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:56.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:56.918 -07 000000482 INF: FPGA: Recv ZSGSRD 33065 17-03-17 23:40:56.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:56.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:56.928 -07 000000502 INF: FPGA: Recv ZSGSRD 33063 17-03-17 23:40:56.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:56.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:56.938 -07 000000561 INF: FPGA: Recv ZSGSRD 33069 17-03-17 23:40:56.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:56.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:56.948 -07 000000433 INF: FPGA: Recv ZSGSRD 33068 17-03-17 23:40:56.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:56.958 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:40:56.958 -07 000000541 INF: FPGA: Recv ZPIEZORD 28220 17-03-17 23:40:56.968 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:56.968 -07 000000610 INF: Z Motor: Piezo is near 40.3 V (nominally 0 to 100 V), expect near 50.9 V, since DAC is at 5.092 V. Piezo Error = -10.6 V. 17-03-17 23:40:56.968 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -152.7 um, Read 10 ADC samples: Avg = 33067 (-151.9 uncal um), Error = 0.8 uncal um, Median = 33067 (-151.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 33063 (-151.9 uncal um), Max = 33073 (-152.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um) 17-03-17 23:40:56.968 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 33067, posNoise = 6, negNoise = 4 17-03-17 23:40:56.968 -07 000000610 INF: Z Motor: After move to -0.152749, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:40:56.968 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms) 17-03-17 23:40:56.968 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:40:56.968 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:40:56.968 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:40:56.968 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:40:56.968 -07 000000409 INF: Disarm and arm camera sensor 0: FullImageTriggered start. 17-03-17 23:40:56.968 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:40:56.968 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:40:56.968 -07 000000409 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start. 17-03-17 23:40:56.978 -07 000000409 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms. 17-03-17 23:40:56.978 -07 000000409 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start. 17-03-17 23:40:56.988 -07 000000409 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms. 17-03-17 23:40:56.988 -07 000000409 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms. 17-03-17 23:40:56.988 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:40:57.088 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:40:57.088 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:40:57.188 -07 000000547 INF: FPGA: Recv @CAMSNAP turning led on 192 17-03-17 23:40:57.488 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 492 17-03-17 23:40:57.488 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492 17-03-17 23:40:57.488 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start. 17-03-17 23:40:57.488 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1406045800, 0x0, 314322768) start. 17-03-17 23:40:57.678 -07 000000409 INF: FPGA: Recv @CAMSNAP 685 17-03-17 23:40:57.678 -07 000000480 INF: FPGA: Recv CAMSNAP 17-03-17 23:40:57.678 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 686 ms to get response, and 689 ms overall 17-03-17 23:40:58.078 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1406045800, 0x0, 314322768) end. Duration was 586 ms. 17-03-17 23:40:58.078 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:40:58.078 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:40:58.078 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 590 ms. 17-03-17 23:40:58.178 -07 000000610 INF: ComputeBrenner start 17-03-17 23:40:58.188 -07 000000610 INF: Image SNR check: start 17-03-17 23:40:58.198 -07 000000610 INF: Image SNR check: image is Faint [peak (Max-Min)=22.59] 17-03-17 23:40:58.198 -07 000000610 INF: Scanning Z-Position: -0.150747 17-03-17 23:40:58.198 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 32931, sync = True, waitForSettling = True) 17-03-17 23:40:58.198 -07 000000610 INF: Z Motor: Moving to -0.150748 mm, started at -0.152753 mm, distance = 2.00 um 17-03-17 23:40:58.198 -07 000000610 INF: FPGA: Xmit ZDACW 32931\n [Z Motor] 17-03-17 23:40:58.198 -07 000000627 INF: FPGA: Recv ZDACW 17-03-17 23:40:58.208 -07 000000610 INF: FPGA: 'ZDACW 32931' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:40:58.208 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:40:58.208 -07 000000547 INF: FPGA: Recv ZDACR 32931 17-03-17 23:40:58.218 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:58.218 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:40:58.268 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 3.99219, 17-03-17 23:40:58.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:58.368 -07 000000486 INF: FPGA: Recv ZSGSRD 32753 17-03-17 23:40:58.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:40:58.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:58.378 -07 000000576 INF: FPGA: Recv ZSGSRD 32759 17-03-17 23:40:58.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:58.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:58.388 -07 000000561 INF: FPGA: Recv ZSGSRD 32754 17-03-17 23:40:58.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:58.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:58.398 -07 000000618 INF: FPGA: Recv ZSGSRD 32756 17-03-17 23:40:58.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:58.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:58.408 -07 000000547 INF: FPGA: Recv ZSGSRD 32755 17-03-17 23:40:58.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:58.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:58.418 -07 000000409 INF: FPGA: Recv ZSGSRD 32756 17-03-17 23:40:58.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:58.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:58.428 -07 000000541 INF: FPGA: Recv ZSGSRD 32754 17-03-17 23:40:58.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:58.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:58.438 -07 000000576 INF: FPGA: Recv ZSGSRD 32755 17-03-17 23:40:58.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:58.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:58.448 -07 000000618 INF: FPGA: Recv ZSGSRD 32751 17-03-17 23:40:58.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:58.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:40:58.458 -07 000000459 INF: FPGA: Recv ZSGSRD 32754 17-03-17 23:40:58.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:58.468 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:40:58.468 -07 000000409 INF: FPGA: Recv ZPIEZORD 27886 17-03-17 23:40:58.478 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:58.478 -07 000000610 INF: Z Motor: Piezo is near 39.6 V (nominally 0 to 100 V), expect near 50.2 V, since DAC is at 5.025 V. Piezo Error = -10.7 V. 17-03-17 23:40:58.478 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -150.7 um, Read 10 ADC samples: Avg = 32755 (-149.9 uncal um), Error = 0.8 uncal um, Median = 32754 (-149.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 32751 (-149.9 uncal um), Max = 32759 (-149.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um) 17-03-17 23:40:58.478 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 32755, posNoise = 4, negNoise = 4 17-03-17 23:40:58.478 -07 000000610 INF: Z Motor: After move to -0.150748, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:40:58.478 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms) 17-03-17 23:40:58.478 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:40:58.478 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:40:58.478 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:40:58.478 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:40:58.478 -07 000000459 INF: Disarm and arm camera sensor 0: FullImageTriggered start. 17-03-17 23:40:58.478 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:40:58.478 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:40:58.478 -07 000000459 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start. 17-03-17 23:40:58.488 -07 000000459 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms. 17-03-17 23:40:58.488 -07 000000459 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start. 17-03-17 23:40:58.488 -07 000000459 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 8 ms. 17-03-17 23:40:58.488 -07 000000459 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 13 ms. 17-03-17 23:40:58.498 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:40:58.688 -07 000000547 INF: FPGA: Recv @CAMSNAP turning led on 192 17-03-17 23:40:58.988 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 492 17-03-17 23:40:58.988 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492 17-03-17 23:40:58.998 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start. 17-03-17 23:40:58.998 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1457648288, 0x0, 314322768) start. 17-03-17 23:40:59.188 -07 000000486 INF: FPGA: Recv @CAMSNAP 685 17-03-17 23:40:59.188 -07 000000623 INF: FPGA: Recv CAMSNAP 17-03-17 23:40:59.188 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 681 ms to get response, and 689 ms overall 17-03-17 23:40:59.578 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1457648288, 0x0, 314322768) end. Duration was 585 ms. 17-03-17 23:40:59.578 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:40:59.588 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:40:59.588 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 590 ms. 17-03-17 23:40:59.898 -07 000000610 INF: ComputeBrenner start 17-03-17 23:40:59.908 -07 000000610 INF: Image SNR check: start 17-03-17 23:40:59.918 -07 000000610 INF: Image SNR check: image is Faint [peak (Max-Min)=22.33] 17-03-17 23:40:59.918 -07 000000610 INF: Scanning Z-Position: -0.148747 17-03-17 23:40:59.918 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 32494, sync = True, waitForSettling = True) 17-03-17 23:40:59.918 -07 000000610 INF: Z Motor: Moving to -0.148748 mm, started at -0.150748 mm, distance = 2.00 um 17-03-17 23:40:59.918 -07 000000610 INF: FPGA: Xmit ZDACW 32494\n [Z Motor] 17-03-17 23:40:59.918 -07 000000486 INF: FPGA: Recv ZDACW 17-03-17 23:40:59.928 -07 000000610 INF: FPGA: 'ZDACW 32494' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-17 23:40:59.928 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:40:59.928 -07 000000482 INF: FPGA: Recv ZDACR 32494 17-03-17 23:40:59.938 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:40:59.938 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:41:00.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:00.088 -07 000000576 INF: FPGA: Recv ZSGSRD 32444 17-03-17 23:41:00.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:41:00.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:00.098 -07 000000547 INF: FPGA: Recv ZSGSRD 32439 17-03-17 23:41:00.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:00.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:00.108 -07 000000438 INF: FPGA: Recv ZSGSRD 32439 17-03-17 23:41:00.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:00.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:00.118 -07 000000627 INF: FPGA: Recv ZSGSRD 32444 17-03-17 23:41:00.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:00.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:00.128 -07 000000618 INF: FPGA: Recv ZSGSRD 32447 17-03-17 23:41:00.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:00.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:00.138 -07 000000623 INF: FPGA: Recv ZSGSRD 32442 17-03-17 23:41:00.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:00.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:00.148 -07 000000502 INF: FPGA: Recv ZSGSRD 32445 17-03-17 23:41:00.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:00.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:00.158 -07 000000482 INF: FPGA: Recv ZSGSRD 32449 17-03-17 23:41:00.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:00.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:00.168 -07 000000627 INF: FPGA: Recv ZSGSRD 32446 17-03-17 23:41:00.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:00.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:00.178 -07 000000547 INF: FPGA: Recv ZSGSRD 32446 17-03-17 23:41:00.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:00.188 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:41:00.188 -07 000000576 INF: FPGA: Recv ZPIEZORD 27568 17-03-17 23:41:00.198 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:00.198 -07 000000610 INF: Z Motor: Piezo is near 38.9 V (nominally 0 to 100 V), expect near 49.6 V, since DAC is at 4.958 V. Piezo Error = -10.7 V. 17-03-17 23:41:00.198 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -148.7 um, Read 10 ADC samples: Avg = 32444 (-147.9 uncal um), Error = 0.8 uncal um, Median = 32444 (-147.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 32439 (-147.9 uncal um), Max = 32449 (-148.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-17 23:41:00.198 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 32444, posNoise = 5, negNoise = 5 17-03-17 23:41:00.198 -07 000000610 INF: Z Motor: After move to -0.148748, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:41:00.198 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms) 17-03-17 23:41:00.198 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:41:00.198 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:41:00.198 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:41:00.198 -07 000000618 INF: Disarm and arm camera sensor 0: FullImageTriggered start. 17-03-17 23:41:00.198 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:41:00.198 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:41:00.198 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-17 23:41:00.198 -07 000000618 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start. 17-03-17 23:41:00.208 -07 000000618 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms. 17-03-17 23:41:00.208 -07 000000618 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start. 17-03-17 23:41:00.218 -07 000000618 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 14 ms. 17-03-17 23:41:00.218 -07 000000618 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 19 ms. 17-03-17 23:41:00.218 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:41:00.418 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 192 17-03-17 23:41:00.718 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 492 17-03-17 23:41:00.718 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492 17-03-17 23:41:00.718 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start. 17-03-17 23:41:00.718 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) start. 17-03-17 23:41:00.908 -07 000000480 INF: FPGA: Recv @CAMSNAP 685 17-03-17 23:41:00.908 -07 000000448 INF: FPGA: Recv CAMSNAP 17-03-17 23:41:00.908 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 678 ms to get response, and 689 ms overall 17-03-17 23:41:01.308 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) end. Duration was 588 ms. 17-03-17 23:41:01.308 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:41:01.318 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms. 17-03-17 23:41:01.318 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 594 ms. 17-03-17 23:41:01.508 -07 000000610 INF: ComputeBrenner start 17-03-17 23:41:01.518 -07 000000610 INF: Image SNR check: start 17-03-17 23:41:01.528 -07 000000610 INF: Image SNR check: image is Faint [peak (Max-Min)=22.93] 17-03-17 23:41:01.528 -07 000000610 INF: Scanning Z-Position: -0.146747 17-03-17 23:41:01.528 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 32057, sync = True, waitForSettling = True) 17-03-17 23:41:01.528 -07 000000610 INF: Z Motor: Moving to -0.146748 mm, started at -0.148750 mm, distance = 2.00 um 17-03-17 23:41:01.528 -07 000000610 INF: FPGA: Xmit ZDACW 32057\n [Z Motor] 17-03-17 23:41:01.528 -07 000000502 INF: FPGA: Recv ZDACW 17-03-17 23:41:01.538 -07 000000610 INF: FPGA: 'ZDACW 32057' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:41:01.538 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:41:01.538 -07 000000409 INF: FPGA: Recv ZDACR 32057 17-03-17 23:41:01.548 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:01.548 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:41:01.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:01.698 -07 000000618 INF: FPGA: Recv ZSGSRD 32137 17-03-17 23:41:01.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:41:01.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:01.708 -07 000000480 INF: FPGA: Recv ZSGSRD 32136 17-03-17 23:41:01.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:01.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:01.718 -07 000000623 INF: FPGA: Recv ZSGSRD 32132 17-03-17 23:41:01.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:01.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:01.728 -07 000000547 INF: FPGA: Recv ZSGSRD 32127 17-03-17 23:41:01.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:01.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:01.738 -07 000000512 INF: FPGA: Recv ZSGSRD 32131 17-03-17 23:41:01.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:01.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:01.748 -07 000000459 INF: FPGA: Recv ZSGSRD 32129 17-03-17 23:41:01.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:01.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:01.758 -07 000000576 INF: FPGA: Recv ZSGSRD 32124 17-03-17 23:41:01.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:01.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:01.768 -07 000000618 INF: FPGA: Recv ZSGSRD 32137 17-03-17 23:41:01.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:01.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:01.778 -07 000000448 INF: FPGA: Recv ZSGSRD 32136 17-03-17 23:41:01.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:01.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:01.788 -07 000000547 INF: FPGA: Recv ZSGSRD 32137 17-03-17 23:41:01.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:01.798 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:41:01.798 -07 000000459 INF: FPGA: Recv ZPIEZORD 27224 17-03-17 23:41:01.808 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:01.808 -07 000000610 INF: Z Motor: Piezo is near 38.2 V (nominally 0 to 100 V), expect near 48.9 V, since DAC is at 4.892 V. Piezo Error = -10.8 V. 17-03-17 23:41:01.808 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -146.7 um, Read 10 ADC samples: Avg = 32133 (-145.9 uncal um), Error = 0.8 uncal um, Median = 32134 (-145.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 32124 (-145.9 uncal um), Max = 32137 (-146.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um) 17-03-17 23:41:01.808 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 32133, posNoise = 4, negNoise = 9 17-03-17 23:41:01.808 -07 000000610 INF: Z Motor: After move to -0.146748, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:41:01.808 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms) 17-03-17 23:41:01.808 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:41:01.808 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:41:01.808 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:41:01.808 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:41:01.808 -07 000000486 INF: Disarm and arm camera sensor 0: FullImageTriggered start. 17-03-17 23:41:01.808 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:41:01.808 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:41:01.808 -07 000000486 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start. 17-03-17 23:41:01.818 -07 000000486 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms. 17-03-17 23:41:01.818 -07 000000486 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start. 17-03-17 23:41:01.828 -07 000000486 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms. 17-03-17 23:41:01.828 -07 000000486 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 14 ms. 17-03-17 23:41:01.828 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:41:02.028 -07 000000486 INF: FPGA: Recv @CAMSNAP turning led on 192 17-03-17 23:41:02.088 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:41:02.098 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:41:02.328 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 492 17-03-17 23:41:02.328 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492 17-03-17 23:41:02.328 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start. 17-03-17 23:41:02.328 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1406045800, 0x0, 314322768) start. 17-03-17 23:41:02.518 -07 000000409 INF: FPGA: Recv @CAMSNAP 685 17-03-17 23:41:02.518 -07 000000541 INF: FPGA: Recv CAMSNAP 17-03-17 23:41:02.518 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 683 ms to get response, and 689 ms overall 17-03-17 23:41:02.908 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1406045800, 0x0, 314322768) end. Duration was 586 ms. 17-03-17 23:41:02.908 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:41:02.918 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms. 17-03-17 23:41:02.918 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 592 ms. 17-03-17 23:41:03.018 -07 000000610 INF: ComputeBrenner start 17-03-17 23:41:03.028 -07 000000610 INF: Image SNR check: start 17-03-17 23:41:03.038 -07 000000610 INF: Image SNR check: image is Faint [peak (Max-Min)=22.66] 17-03-17 23:41:03.038 -07 000000610 INF: Scanning Z-Position: -0.144747 17-03-17 23:41:03.038 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 31620, sync = True, waitForSettling = True) 17-03-17 23:41:03.038 -07 000000610 INF: Z Motor: Moving to -0.144747 mm, started at -0.146753 mm, distance = 2.01 um 17-03-17 23:41:03.038 -07 000000610 INF: FPGA: Xmit ZDACW 31620\n [Z Motor] 17-03-17 23:41:03.038 -07 000000512 INF: FPGA: Recv ZDACW 17-03-17 23:41:03.048 -07 000000610 INF: FPGA: 'ZDACW 31620' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:41:03.048 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:41:03.048 -07 000000618 INF: FPGA: Recv ZDACR 31620 17-03-17 23:41:03.058 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:03.058 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:41:03.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:03.208 -07 000000448 INF: FPGA: Recv ZSGSRD 31823 17-03-17 23:41:03.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:41:03.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:03.218 -07 000000480 INF: FPGA: Recv ZSGSRD 31820 17-03-17 23:41:03.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:03.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:03.228 -07 000000576 INF: FPGA: Recv ZSGSRD 31828 17-03-17 23:41:03.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:03.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:03.238 -07 000000459 INF: FPGA: Recv ZSGSRD 31823 17-03-17 23:41:03.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:03.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:03.248 -07 000000482 INF: FPGA: Recv ZSGSRD 31823 17-03-17 23:41:03.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:03.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:03.258 -07 000000547 INF: FPGA: Recv ZSGSRD 31825 17-03-17 23:41:03.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:03.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:03.268 -07 000000502 INF: FPGA: Recv ZSGSRD 31818 17-03-17 23:41:03.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:03.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:03.278 -07 000000576 INF: FPGA: Recv ZSGSRD 31820 17-03-17 23:41:03.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:03.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:03.288 -07 000000512 INF: FPGA: Recv ZSGSRD 31825 17-03-17 23:41:03.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:03.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:03.298 -07 000000502 INF: FPGA: Recv ZSGSRD 31823 17-03-17 23:41:03.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 23:41:03.308 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:41:03.308 -07 000000561 INF: FPGA: Recv ZPIEZORD 26944 17-03-17 23:41:03.318 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:03.318 -07 000000610 INF: Z Motor: Piezo is near 37.6 V (nominally 0 to 100 V), expect near 48.2 V, since DAC is at 4.825 V. Piezo Error = -10.7 V. 17-03-17 23:41:03.318 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -144.7 um, Read 10 ADC samples: Avg = 31823 (-143.9 uncal um), Error = 0.8 uncal um, Median = 31823 (-143.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 31818 (-143.9 uncal um), Max = 31828 (-144.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-17 23:41:03.318 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31823, posNoise = 5, negNoise = 5 17-03-17 23:41:03.318 -07 000000610 INF: Z Motor: After move to -0.144747, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:41:03.318 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms) 17-03-17 23:41:03.318 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:41:03.318 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:41:03.318 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:41:03.318 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:41:03.318 -07 000000409 INF: Disarm and arm camera sensor 0: FullImageTriggered start. 17-03-17 23:41:03.318 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:41:03.318 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:41:03.318 -07 000000409 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start. 17-03-17 23:41:03.328 -07 000000409 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms. 17-03-17 23:41:03.328 -07 000000409 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start. 17-03-17 23:41:03.338 -07 000000409 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms. 17-03-17 23:41:03.338 -07 000000409 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 14 ms. 17-03-17 23:41:03.338 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:41:03.538 -07 000000448 INF: FPGA: Recv @CAMSNAP turning led on 192 17-03-17 23:41:03.638 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 3.993549, 17-03-17 23:41:03.838 -07 000000482 INF: FPGA: Recv @CAMSNAP img rdy 492 17-03-17 23:41:03.838 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492 17-03-17 23:41:03.838 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start. 17-03-17 23:41:03.838 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1457648288, 0x0, 314322768) start. 17-03-17 23:41:04.028 -07 000000475 INF: FPGA: Recv @CAMSNAP 685 17-03-17 23:41:04.028 -07 000000433 INF: FPGA: Recv CAMSNAP 17-03-17 23:41:04.028 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 684 ms to get response, and 689 ms overall 17-03-17 23:41:04.418 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1457648288, 0x0, 314322768) end. Duration was 586 ms. 17-03-17 23:41:04.428 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:41:04.428 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:41:04.428 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms. 17-03-17 23:41:04.628 -07 000000610 INF: ComputeBrenner start 17-03-17 23:41:04.638 -07 000000610 INF: Image SNR check: start 17-03-17 23:41:04.648 -07 000000610 INF: Image SNR check: image is Faint [peak (Max-Min)=23.65] 17-03-17 23:41:04.648 -07 000000610 INF: Scanning Z-Position: -0.142747 17-03-17 23:41:04.648 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 31183, sync = True, waitForSettling = True) 17-03-17 23:41:04.648 -07 000000610 INF: Z Motor: Moving to -0.142747 mm, started at -0.144761 mm, distance = 2.01 um 17-03-17 23:41:04.648 -07 000000610 INF: FPGA: Xmit ZDACW 31183\n [Z Motor] 17-03-17 23:41:04.648 -07 000000448 INF: FPGA: Recv ZDACW 17-03-17 23:41:04.658 -07 000000610 INF: FPGA: 'ZDACW 31183' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:41:04.658 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:41:04.658 -07 000000482 INF: FPGA: Recv ZDACR 31183 17-03-17 23:41:04.668 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:41:04.668 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:41:04.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:04.818 -07 000000459 INF: FPGA: Recv ZSGSRD 31510 17-03-17 23:41:04.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:04.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:04.828 -07 000000438 INF: FPGA: Recv ZSGSRD 31509 17-03-17 23:41:04.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:04.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:04.838 -07 000000486 INF: FPGA: Recv ZSGSRD 31509 17-03-17 23:41:04.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:04.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:04.848 -07 000000547 INF: FPGA: Recv ZSGSRD 31509 17-03-17 23:41:04.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:04.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:04.858 -07 000000482 INF: FPGA: Recv ZSGSRD 31510 17-03-17 23:41:04.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:04.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:04.868 -07 000000561 INF: FPGA: Recv ZSGSRD 31509 17-03-17 23:41:04.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:04.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:04.878 -07 000000541 INF: FPGA: Recv ZSGSRD 31510 17-03-17 23:41:04.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:04.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:04.888 -07 000000618 INF: FPGA: Recv ZSGSRD 31512 17-03-17 23:41:04.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:04.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:04.898 -07 000000480 INF: FPGA: Recv ZSGSRD 31506 17-03-17 23:41:04.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:04.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:04.908 -07 000000482 INF: FPGA: Recv ZSGSRD 31514 17-03-17 23:41:04.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:04.918 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:41:04.918 -07 000000512 INF: FPGA: Recv ZPIEZORD 26621 17-03-17 23:41:04.928 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:04.928 -07 000000610 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 47.6 V, since DAC is at 4.758 V. Piezo Error = -10.7 V. 17-03-17 23:41:04.928 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -142.7 um, Read 10 ADC samples: Avg = 31510 (-141.9 uncal um), Error = 0.8 uncal um, Median = 31510 (-141.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 31506 (-141.9 uncal um), Max = 31514 (-142.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um) 17-03-17 23:41:04.928 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31510, posNoise = 4, negNoise = 4 17-03-17 23:41:04.928 -07 000000610 INF: Z Motor: After move to -0.142747, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:41:04.928 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms) 17-03-17 23:41:04.928 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:41:04.928 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:41:04.928 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:41:04.928 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:41:04.928 -07 000000482 INF: Disarm and arm camera sensor 0: FullImageTriggered start. 17-03-17 23:41:04.928 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:41:04.928 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms. 17-03-17 23:41:04.928 -07 000000482 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start. 17-03-17 23:41:04.938 -07 000000482 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms. 17-03-17 23:41:04.938 -07 000000482 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start. 17-03-17 23:41:04.948 -07 000000482 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms. 17-03-17 23:41:04.948 -07 000000482 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms. 17-03-17 23:41:04.948 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:41:05.148 -07 000000541 INF: FPGA: Recv @CAMSNAP turning led on 192 17-03-17 23:41:05.448 -07 000000409 INF: FPGA: Recv @CAMSNAP img rdy 492 17-03-17 23:41:05.448 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492 17-03-17 23:41:05.448 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start. 17-03-17 23:41:05.448 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1102499440, 0x0, 314322768) start. 17-03-17 23:41:05.638 -07 000000618 INF: FPGA: Recv @CAMSNAP 685 17-03-17 23:41:05.638 -07 000000433 INF: FPGA: Recv CAMSNAP 17-03-17 23:41:05.638 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 683 ms to get response, and 689 ms overall 17-03-17 23:41:06.028 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1102499440, 0x0, 314322768) end. Duration was 586 ms. 17-03-17 23:41:06.028 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:41:06.038 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:41:06.038 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms. 17-03-17 23:41:06.138 -07 000000610 INF: ComputeBrenner start 17-03-17 23:41:06.148 -07 000000610 INF: Image SNR check: start 17-03-17 23:41:06.158 -07 000000610 INF: Image SNR check: image is Faint [peak (Max-Min)=24.27] 17-03-17 23:41:06.158 -07 000000610 INF: Scanning Z-Position: -0.140747 17-03-17 23:41:06.158 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 30746, sync = True, waitForSettling = True) 17-03-17 23:41:06.158 -07 000000610 INF: Z Motor: Moving to -0.140746 mm, started at -0.142750 mm, distance = 2.00 um 17-03-17 23:41:06.158 -07 000000610 INF: FPGA: Xmit ZDACW 30746\n [Z Motor] 17-03-17 23:41:06.158 -07 000000618 INF: FPGA: Recv ZDACW 17-03-17 23:41:06.168 -07 000000610 INF: FPGA: 'ZDACW 30746' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-17 23:41:06.168 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:41:06.168 -07 000000561 INF: FPGA: Recv ZDACR 30746 17-03-17 23:41:06.178 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:06.178 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:41:06.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:06.328 -07 000000433 INF: FPGA: Recv ZSGSRD 31195 17-03-17 23:41:06.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:41:06.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:06.338 -07 000000438 INF: FPGA: Recv ZSGSRD 31202 17-03-17 23:41:06.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:06.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:06.348 -07 000000547 INF: FPGA: Recv ZSGSRD 31200 17-03-17 23:41:06.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:06.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:06.358 -07 000000618 INF: FPGA: Recv ZSGSRD 31195 17-03-17 23:41:06.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:06.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:06.368 -07 000000482 INF: FPGA: Recv ZSGSRD 31197 17-03-17 23:41:06.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:06.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:06.378 -07 000000433 INF: FPGA: Recv ZSGSRD 31204 17-03-17 23:41:06.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:06.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:06.388 -07 000000623 INF: FPGA: Recv ZSGSRD 31201 17-03-17 23:41:06.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:06.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:06.398 -07 000000502 INF: FPGA: Recv ZSGSRD 31200 17-03-17 23:41:06.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:06.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:06.408 -07 000000459 INF: FPGA: Recv ZSGSRD 31195 17-03-17 23:41:06.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:06.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:06.418 -07 000000409 INF: FPGA: Recv ZSGSRD 31202 17-03-17 23:41:06.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:06.428 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:41:06.428 -07 000000433 INF: FPGA: Recv ZPIEZORD 26322 17-03-17 23:41:06.438 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:06.438 -07 000000610 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 46.9 V, since DAC is at 4.692 V. Piezo Error = -10.7 V. 17-03-17 23:41:06.438 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -140.7 um, Read 10 ADC samples: Avg = 31199 (-139.9 uncal um), Error = 0.8 uncal um, Median = 31200 (-140.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 31195 (-139.9 uncal um), Max = 31204 (-140.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um) 17-03-17 23:41:06.438 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31199, posNoise = 5, negNoise = 4 17-03-17 23:41:06.438 -07 000000610 INF: Z Motor: After move to -0.140746, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:41:06.438 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms) 17-03-17 23:41:06.438 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:41:06.438 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:41:06.438 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:41:06.438 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:41:06.438 -07 000000409 INF: Disarm and arm camera sensor 0: FullImageTriggered start. 17-03-17 23:41:06.438 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:41:06.438 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:41:06.438 -07 000000409 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start. 17-03-17 23:41:06.448 -07 000000409 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms. 17-03-17 23:41:06.448 -07 000000409 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start. 17-03-17 23:41:06.458 -07 000000409 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms. 17-03-17 23:41:06.458 -07 000000409 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms. 17-03-17 23:41:06.458 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:41:06.658 -07 000000409 INF: FPGA: Recv @CAMSNAP turning led on 192 17-03-17 23:41:06.958 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 492 17-03-17 23:41:06.958 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492 17-03-17 23:41:06.958 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start. 17-03-17 23:41:06.958 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1154101928, 0x0, 314322768) start. 17-03-17 23:41:07.088 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:41:07.148 -07 000000438 INF: FPGA: Recv @CAMSNAP 688 17-03-17 23:41:07.148 -07 000000547 INF: FPGA: Recv CAMSNAP 17-03-17 23:41:07.148 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 688 ms to get response, and 692 ms overall 17-03-17 23:41:07.538 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1154101928, 0x0, 314322768) end. Duration was 584 ms. 17-03-17 23:41:07.538 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:41:07.548 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:41:07.548 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 589 ms. 17-03-17 23:41:07.618 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:41:07.758 -07 000000610 INF: ComputeBrenner start 17-03-17 23:41:07.778 -07 000000610 INF: Image SNR check: start 17-03-17 23:41:07.778 -07 000000610 INF: Image SNR check: image is Faint [peak (Max-Min)=26.33] 17-03-17 23:41:07.778 -07 000000610 INF: Scanning Z-Position: -0.138747 17-03-17 23:41:07.788 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 30309, sync = True, waitForSettling = True) 17-03-17 23:41:07.788 -07 000000610 INF: Z Motor: Moving to -0.138746 mm, started at -0.140752 mm, distance = 2.01 um 17-03-17 23:41:07.788 -07 000000610 INF: FPGA: Xmit ZDACW 30309\n [Z Motor] 17-03-17 23:41:07.788 -07 000000547 INF: FPGA: Recv ZDACW 17-03-17 23:41:07.798 -07 000000610 INF: FPGA: 'ZDACW 30309' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:07.798 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:41:07.798 -07 000000448 INF: FPGA: Recv ZDACR 30309 17-03-17 23:41:07.808 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:07.808 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:41:07.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:07.958 -07 000000618 INF: FPGA: Recv ZSGSRD 30884 17-03-17 23:41:07.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:41:07.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:07.968 -07 000000438 INF: FPGA: Recv ZSGSRD 30888 17-03-17 23:41:07.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:07.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:07.978 -07 000000480 INF: FPGA: Recv ZSGSRD 30891 17-03-17 23:41:07.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:07.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:07.988 -07 000000547 INF: FPGA: Recv ZSGSRD 30884 17-03-17 23:41:07.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:07.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:07.998 -07 000000459 INF: FPGA: Recv ZSGSRD 30892 17-03-17 23:41:08.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:08.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:08.008 -07 000000502 INF: FPGA: Recv ZSGSRD 30887 17-03-17 23:41:08.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:08.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:08.018 -07 000000438 INF: FPGA: Recv ZSGSRD 30880 17-03-17 23:41:08.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:08.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:08.028 -07 000000623 INF: FPGA: Recv ZSGSRD 30893 17-03-17 23:41:08.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:08.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:08.038 -07 000000627 INF: FPGA: Recv ZSGSRD 30890 17-03-17 23:41:08.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:08.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:08.048 -07 000000459 INF: FPGA: Recv ZSGSRD 30887 17-03-17 23:41:08.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:08.058 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:41:08.058 -07 000000502 INF: FPGA: Recv ZPIEZORD 25999 17-03-17 23:41:08.068 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:08.068 -07 000000610 INF: Z Motor: Piezo is near 35.5 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.625 V. Piezo Error = -10.7 V. 17-03-17 23:41:08.068 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.7 um, Read 10 ADC samples: Avg = 30888 (-138.0 uncal um), Error = 0.8 uncal um, Median = 30888 (-138.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30880 (-137.9 uncal um), Max = 30893 (-138.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um) 17-03-17 23:41:08.068 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30888, posNoise = 5, negNoise = 8 17-03-17 23:41:08.068 -07 000000610 INF: Z Motor: After move to -0.138746, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:41:08.068 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms) 17-03-17 23:41:08.068 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:41:08.068 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:41:08.068 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:41:08.068 -07 000000576 INF: Disarm and arm camera sensor 0: FullImageTriggered start. 17-03-17 23:41:08.068 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:41:08.068 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:41:08.068 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:41:08.068 -07 000000576 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start. 17-03-17 23:41:08.078 -07 000000576 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms. 17-03-17 23:41:08.078 -07 000000576 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start. 17-03-17 23:41:08.088 -07 000000576 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms. 17-03-17 23:41:08.088 -07 000000576 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms. 17-03-17 23:41:08.088 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:41:08.288 -07 000000475 INF: FPGA: Recv @CAMSNAP turning led on 192 17-03-17 23:41:08.588 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 492 17-03-17 23:41:08.588 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492 17-03-17 23:41:08.588 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start. 17-03-17 23:41:08.588 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) start. 17-03-17 23:41:08.778 -07 000000459 INF: FPGA: Recv @CAMSNAP 685 17-03-17 23:41:08.778 -07 000000409 INF: FPGA: Recv CAMSNAP 17-03-17 23:41:08.778 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 685 ms to get response, and 689 ms overall 17-03-17 23:41:09.008 -07 000000409 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 3.974486, 17-03-17 23:41:09.168 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) end. Duration was 583 ms. 17-03-17 23:41:09.168 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:41:09.178 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:41:09.178 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 588 ms. 17-03-17 23:41:09.378 -07 000000610 INF: ComputeBrenner start 17-03-17 23:41:09.388 -07 000000610 INF: Image SNR check: start 17-03-17 23:41:09.398 -07 000000610 INF: Image SNR check: image is Faint [peak (Max-Min)=29.25] 17-03-17 23:41:09.398 -07 000000610 INF: Scanning Z-Position: -0.136747 17-03-17 23:41:09.398 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29872, sync = True, waitForSettling = True) 17-03-17 23:41:09.398 -07 000000610 INF: Z Motor: Moving to -0.136745 mm, started at -0.138754 mm, distance = 2.01 um 17-03-17 23:41:09.398 -07 000000610 INF: FPGA: Xmit ZDACW 29872\n [Z Motor] 17-03-17 23:41:09.398 -07 000000502 INF: FPGA: Recv ZDACW 17-03-17 23:41:09.408 -07 000000610 INF: FPGA: 'ZDACW 29872' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:41:09.408 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:41:09.408 -07 000000576 INF: FPGA: Recv ZDACR 29872 17-03-17 23:41:09.418 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:09.418 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:41:09.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:09.568 -07 000000541 INF: FPGA: Recv ZSGSRD 30579 17-03-17 23:41:09.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:41:09.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:09.578 -07 000000433 INF: FPGA: Recv ZSGSRD 30579 17-03-17 23:41:09.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:09.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:09.588 -07 000000547 INF: FPGA: Recv ZSGSRD 30569 17-03-17 23:41:09.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:09.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:09.598 -07 000000502 INF: FPGA: Recv ZSGSRD 30573 17-03-17 23:41:09.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:09.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:09.608 -07 000000576 INF: FPGA: Recv ZSGSRD 30576 17-03-17 23:41:09.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:09.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:09.618 -07 000000409 INF: FPGA: Recv ZSGSRD 30580 17-03-17 23:41:09.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:09.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:09.628 -07 000000486 INF: FPGA: Recv ZSGSRD 30572 17-03-17 23:41:09.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:09.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:09.638 -07 000000618 INF: FPGA: Recv ZSGSRD 30573 17-03-17 23:41:09.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:09.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:09.648 -07 000000623 INF: FPGA: Recv ZSGSRD 30578 17-03-17 23:41:09.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:09.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:09.658 -07 000000459 INF: FPGA: Recv ZSGSRD 30580 17-03-17 23:41:09.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:41:09.668 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:41:09.668 -07 000000448 INF: FPGA: Recv ZPIEZORD 25706 17-03-17 23:41:09.678 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:09.678 -07 000000610 INF: Z Motor: Piezo is near 34.9 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.558 V. Piezo Error = -10.7 V. 17-03-17 23:41:09.678 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.7 um, Read 10 ADC samples: Avg = 30576 (-136.0 uncal um), Error = 0.8 uncal um, Median = 30577 (-136.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30569 (-135.9 uncal um), Max = 30580 (-136.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um) 17-03-17 23:41:09.678 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30576, posNoise = 4, negNoise = 7 17-03-17 23:41:09.678 -07 000000610 INF: Z Motor: After move to -0.136745, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:41:09.678 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms) 17-03-17 23:41:09.678 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:41:09.678 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:41:09.678 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:41:09.678 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:41:09.678 -07 000000459 INF: Disarm and arm camera sensor 0: FullImageTriggered start. 17-03-17 23:41:09.678 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:41:09.678 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:41:09.678 -07 000000459 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start. 17-03-17 23:41:09.688 -07 000000459 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms. 17-03-17 23:41:09.688 -07 000000459 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start. 17-03-17 23:41:09.698 -07 000000459 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms. 17-03-17 23:41:09.698 -07 000000459 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms. 17-03-17 23:41:09.698 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:41:09.898 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 192 17-03-17 23:41:10.198 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 492 17-03-17 23:41:10.198 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492 17-03-17 23:41:10.198 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start. 17-03-17 23:41:10.198 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1406045800, 0x0, 314322768) start. 17-03-17 23:41:10.388 -07 000000480 INF: FPGA: Recv @CAMSNAP 685 17-03-17 23:41:10.388 -07 000000409 INF: FPGA: Recv CAMSNAP 17-03-17 23:41:10.388 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 685 ms to get response, and 689 ms overall 17-03-17 23:41:10.788 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1406045800, 0x0, 314322768) end. Duration was 587 ms. 17-03-17 23:41:10.788 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:41:10.788 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:41:10.788 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 592 ms. 17-03-17 23:41:10.888 -07 000000610 INF: ComputeBrenner start 17-03-17 23:41:10.898 -07 000000610 INF: Image SNR check: start 17-03-17 23:41:10.908 -07 000000610 INF: Image SNR check: image is Faint [peak (Max-Min)=36.36] 17-03-17 23:41:10.908 -07 000000610 INF: Scanning Z-Position: -0.134747 17-03-17 23:41:10.908 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 29435, sync = True, waitForSettling = True) 17-03-17 23:41:10.908 -07 000000610 INF: Z Motor: Moving to -0.134745 mm, started at -0.136750 mm, distance = 2.01 um 17-03-17 23:41:10.908 -07 000000610 INF: FPGA: Xmit ZDACW 29435\n [Z Motor] 17-03-17 23:41:10.908 -07 000000448 INF: FPGA: Recv ZDACW 17-03-17 23:41:10.918 -07 000000610 INF: FPGA: 'ZDACW 29435' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:41:10.918 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:41:10.918 -07 000000547 INF: FPGA: Recv ZDACR 29435 17-03-17 23:41:10.928 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:10.928 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:41:11.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:11.078 -07 000000459 INF: FPGA: Recv ZSGSRD 30261 17-03-17 23:41:11.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:41:11.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:11.088 -07 000000480 INF: FPGA: Recv ZSGSRD 30270 17-03-17 23:41:11.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:11.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:11.098 -07 000000502 INF: FPGA: Recv ZSGSRD 30268 17-03-17 23:41:11.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:11.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:11.108 -07 000000433 INF: FPGA: Recv ZSGSRD 30262 17-03-17 23:41:11.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:11.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:11.118 -07 000000561 INF: FPGA: Recv ZSGSRD 30267 17-03-17 23:41:11.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:41:11.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:11.128 -07 000000475 INF: FPGA: Recv ZSGSRD 30257 17-03-17 23:41:11.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:11.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:11.138 -07 000000502 INF: FPGA: Recv ZSGSRD 30263 17-03-17 23:41:11.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:11.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:11.148 -07 000000512 INF: FPGA: Recv ZSGSRD 30265 17-03-17 23:41:11.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:11.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:11.158 -07 000000576 INF: FPGA: Recv ZSGSRD 30267 17-03-17 23:41:11.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:11.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:11.168 -07 000000547 INF: FPGA: Recv ZSGSRD 30266 17-03-17 23:41:11.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:11.178 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:41:11.178 -07 000000541 INF: FPGA: Recv ZPIEZORD 25397 17-03-17 23:41:11.188 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:11.188 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 44.9 V, since DAC is at 4.491 V. Piezo Error = -10.7 V. 17-03-17 23:41:11.188 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.7 um, Read 10 ADC samples: Avg = 30265 (-134.0 uncal um), Error = 0.8 uncal um, Median = 30266 (-134.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30257 (-133.9 uncal um), Max = 30270 (-134.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um) 17-03-17 23:41:11.188 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30265, posNoise = 5, negNoise = 8 17-03-17 23:41:11.188 -07 000000610 INF: Z Motor: After move to -0.134745, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:41:11.188 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms) 17-03-17 23:41:11.188 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:41:11.188 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:41:11.188 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:41:11.188 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:41:11.188 -07 000000547 INF: Disarm and arm camera sensor 0: FullImageTriggered start. 17-03-17 23:41:11.188 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:41:11.188 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:41:11.188 -07 000000547 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start. 17-03-17 23:41:11.198 -07 000000547 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms. 17-03-17 23:41:11.198 -07 000000547 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start. 17-03-17 23:41:11.208 -07 000000547 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms. 17-03-17 23:41:11.208 -07 000000547 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms. 17-03-17 23:41:11.208 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:41:11.408 -07 000000547 INF: FPGA: Recv @CAMSNAP turning led on 192 17-03-17 23:41:11.708 -07 000000433 INF: FPGA: Recv @CAMSNAP img rdy 492 17-03-17 23:41:11.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492 17-03-17 23:41:11.708 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start. 17-03-17 23:41:11.708 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1457648288, 0x0, 314322768) start. 17-03-17 23:41:11.898 -07 000000459 INF: FPGA: Recv @CAMSNAP 685 17-03-17 23:41:11.898 -07 000000561 INF: FPGA: Recv CAMSNAP 17-03-17 23:41:11.898 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 684 ms to get response, and 689 ms overall 17-03-17 23:41:12.088 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:41:12.288 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1457648288, 0x0, 314322768) end. Duration was 586 ms. 17-03-17 23:41:12.288 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:41:12.298 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:41:12.298 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms. 17-03-17 23:41:12.378 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:41:12.508 -07 000000610 INF: ComputeBrenner start 17-03-17 23:41:12.518 -07 000000610 INF: Image SNR check: start 17-03-17 23:41:12.528 -07 000000610 INF: Image SNR check: pass [peak (Max-Min)=55.09] 17-03-17 23:41:12.528 -07 000000610 INF: Scanning Z-Position: -0.132747 17-03-17 23:41:12.528 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28999, sync = True, waitForSettling = True) 17-03-17 23:41:12.528 -07 000000610 INF: Z Motor: Moving to -0.132749 mm, started at -0.134752 mm, distance = 2.00 um 17-03-17 23:41:12.528 -07 000000610 INF: FPGA: Xmit ZDACW 28999\n [Z Motor] 17-03-17 23:41:12.528 -07 000000482 INF: FPGA: Recv ZDACW 17-03-17 23:41:12.538 -07 000000610 INF: FPGA: 'ZDACW 28999' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-17 23:41:12.538 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:41:12.538 -07 000000480 INF: FPGA: Recv ZDACR 28999 17-03-17 23:41:12.548 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:41:12.548 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:41:12.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:12.698 -07 000000459 INF: FPGA: Recv ZSGSRD 29954 17-03-17 23:41:12.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:41:12.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:12.708 -07 000000409 INF: FPGA: Recv ZSGSRD 29955 17-03-17 23:41:12.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:12.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:12.718 -07 000000448 INF: FPGA: Recv ZSGSRD 29949 17-03-17 23:41:12.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:12.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:12.728 -07 000000482 INF: FPGA: Recv ZSGSRD 29957 17-03-17 23:41:12.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:12.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:12.738 -07 000000561 INF: FPGA: Recv ZSGSRD 29956 17-03-17 23:41:12.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:12.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:12.748 -07 000000627 INF: FPGA: Recv ZSGSRD 29952 17-03-17 23:41:12.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:12.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:12.758 -07 000000486 INF: FPGA: Recv ZSGSRD 29954 17-03-17 23:41:12.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:12.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:12.768 -07 000000623 INF: FPGA: Recv ZSGSRD 29951 17-03-17 23:41:12.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:12.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:12.778 -07 000000482 INF: FPGA: Recv ZSGSRD 29956 17-03-17 23:41:12.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:12.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:12.788 -07 000000459 INF: FPGA: Recv ZSGSRD 29960 17-03-17 23:41:12.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:12.798 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:41:12.798 -07 000000433 INF: FPGA: Recv ZPIEZORD 25095 17-03-17 23:41:12.808 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:12.808 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.425 V. Piezo Error = -10.6 V. 17-03-17 23:41:12.808 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.7 um, Read 10 ADC samples: Avg = 29954 (-132.0 uncal um), Error = 0.8 uncal um, Median = 29954 (-132.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29949 (-131.9 uncal um), Max = 29960 (-132.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-17 23:41:12.808 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29954, posNoise = 6, negNoise = 5 17-03-17 23:41:12.808 -07 000000610 INF: Z Motor: After move to -0.132749, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:41:12.808 -07 000000610 INF: Z Motor: MoveAbsStepped took 274 ms) 17-03-17 23:41:12.808 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:41:12.808 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:41:12.808 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:41:12.808 -07 000000618 INF: Disarm and arm camera sensor 0: FullImageTriggered start. 17-03-17 23:41:12.808 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:41:12.808 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:41:12.808 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:41:12.808 -07 000000618 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start. 17-03-17 23:41:12.818 -07 000000618 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms. 17-03-17 23:41:12.818 -07 000000618 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start. 17-03-17 23:41:12.828 -07 000000618 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms. 17-03-17 23:41:12.828 -07 000000618 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 14 ms. 17-03-17 23:41:12.828 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:41:13.028 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 192 17-03-17 23:41:13.328 -07 000000409 INF: FPGA: Recv @CAMSNAP img rdy 492 17-03-17 23:41:13.328 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492 17-03-17 23:41:13.328 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start. 17-03-17 23:41:13.328 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) start. 17-03-17 23:41:13.518 -07 000000512 INF: FPGA: Recv @CAMSNAP 685 17-03-17 23:41:13.518 -07 000000438 INF: FPGA: Recv CAMSNAP 17-03-17 23:41:13.518 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 685 ms to get response, and 691 ms overall 17-03-17 23:41:13.908 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) end. Duration was 586 ms. 17-03-17 23:41:13.908 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:41:13.918 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:41:13.918 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms. 17-03-17 23:41:14.018 -07 000000610 INF: ComputeBrenner start 17-03-17 23:41:14.028 -07 000000610 INF: Image SNR check: start 17-03-17 23:41:14.038 -07 000000610 INF: Image SNR check: pass [peak (Max-Min)=48.92] 17-03-17 23:41:14.038 -07 000000610 INF: Scanning Z-Position: -0.130747 17-03-17 23:41:14.038 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28562, sync = True, waitForSettling = True) 17-03-17 23:41:14.038 -07 000000610 INF: Z Motor: Moving to -0.130748 mm, started at -0.132754 mm, distance = 2.01 um 17-03-17 23:41:14.038 -07 000000610 INF: FPGA: Xmit ZDACW 28562\n [Z Motor] 17-03-17 23:41:14.038 -07 000000627 INF: FPGA: Recv ZDACW 17-03-17 23:41:14.048 -07 000000610 INF: FPGA: 'ZDACW 28562' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 23:41:14.048 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:41:14.048 -07 000000459 INF: FPGA: Recv ZDACR 28562 17-03-17 23:41:14.058 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:14.058 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:41:14.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:14.208 -07 000000618 INF: FPGA: Recv ZSGSRD 29642 17-03-17 23:41:14.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:41:14.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:14.218 -07 000000627 INF: FPGA: Recv ZSGSRD 29645 17-03-17 23:41:14.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:14.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:14.228 -07 000000475 INF: FPGA: Recv ZSGSRD 29643 17-03-17 23:41:14.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:14.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:14.238 -07 000000482 INF: FPGA: Recv ZSGSRD 29639 17-03-17 23:41:14.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:14.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:14.248 -07 000000502 INF: FPGA: Recv ZSGSRD 29644 17-03-17 23:41:14.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:14.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:14.258 -07 000000448 INF: FPGA: Recv ZSGSRD 29643 17-03-17 23:41:14.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:14.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:14.268 -07 000000576 INF: FPGA: Recv ZSGSRD 29642 17-03-17 23:41:14.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:14.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:14.278 -07 000000486 INF: FPGA: Recv ZSGSRD 29642 17-03-17 23:41:14.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:14.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:14.288 -07 000000433 INF: FPGA: Recv ZSGSRD 29644 17-03-17 23:41:14.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:14.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:14.298 -07 000000502 INF: FPGA: Recv ZSGSRD 29643 17-03-17 23:41:14.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:14.308 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:41:14.308 -07 000000541 INF: FPGA: Recv ZPIEZORD 24829 17-03-17 23:41:14.318 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:14.318 -07 000000610 INF: Z Motor: Piezo is near 33.0 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.358 V. Piezo Error = -10.5 V. 17-03-17 23:41:14.318 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.7 um, Read 10 ADC samples: Avg = 29643 (-130.0 uncal um), Error = 0.8 uncal um, Median = 29643 (-130.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29639 (-130.0 uncal um), Max = 29645 (-130.0 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um) 17-03-17 23:41:14.318 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29643, posNoise = 2, negNoise = 4 17-03-17 23:41:14.318 -07 000000610 INF: Z Motor: After move to -0.130748, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:41:14.318 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms) 17-03-17 23:41:14.318 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:41:14.318 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:41:14.318 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:41:14.318 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:41:14.318 -07 000000547 INF: Disarm and arm camera sensor 0: FullImageTriggered start. 17-03-17 23:41:14.318 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:41:14.318 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:41:14.318 -07 000000547 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start. 17-03-17 23:41:14.328 -07 000000547 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms. 17-03-17 23:41:14.328 -07 000000547 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start. 17-03-17 23:41:14.338 -07 000000547 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms. 17-03-17 23:41:14.338 -07 000000547 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms. 17-03-17 23:41:14.338 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:41:14.378 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 3.96762, 17-03-17 23:41:14.538 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 192 17-03-17 23:41:14.838 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 492 17-03-17 23:41:14.838 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492 17-03-17 23:41:14.838 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start. 17-03-17 23:41:14.838 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1406045800, 0x0, 314322768) start. 17-03-17 23:41:15.028 -07 000000480 INF: FPGA: Recv @CAMSNAP 685 17-03-17 23:41:15.028 -07 000000433 INF: FPGA: Recv CAMSNAP 17-03-17 23:41:15.028 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 685 ms to get response, and 689 ms overall 17-03-17 23:41:15.428 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1406045800, 0x0, 314322768) end. Duration was 586 ms. 17-03-17 23:41:15.428 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:41:15.428 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:41:15.428 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms. 17-03-17 23:41:15.628 -07 000000610 INF: ComputeBrenner start 17-03-17 23:41:15.638 -07 000000610 INF: Image SNR check: start 17-03-17 23:41:15.648 -07 000000610 INF: Image SNR check: image is Faint [peak (Max-Min)=34.44] 17-03-17 23:41:15.648 -07 000000610 INF: Scanning Z-Position: -0.128747 17-03-17 23:41:15.648 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28125, sync = True, waitForSettling = True) 17-03-17 23:41:15.648 -07 000000610 INF: Z Motor: Moving to -0.128748 mm, started at -0.130756 mm, distance = 2.01 um 17-03-17 23:41:15.648 -07 000000610 INF: FPGA: Xmit ZDACW 28125\n [Z Motor] 17-03-17 23:41:15.648 -07 000000475 INF: FPGA: Recv ZDACW 17-03-17 23:41:15.658 -07 000000610 INF: FPGA: 'ZDACW 28125' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:41:15.658 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:41:15.658 -07 000000433 INF: FPGA: Recv ZDACR 28125 17-03-17 23:41:15.668 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:15.668 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:41:15.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:15.818 -07 000000618 INF: FPGA: Recv ZSGSRD 29326 17-03-17 23:41:15.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:15.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:15.828 -07 000000448 INF: FPGA: Recv ZSGSRD 29331 17-03-17 23:41:15.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:15.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:15.838 -07 000000480 INF: FPGA: Recv ZSGSRD 29332 17-03-17 23:41:15.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:15.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:15.848 -07 000000459 INF: FPGA: Recv ZSGSRD 29333 17-03-17 23:41:15.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:15.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:15.858 -07 000000547 INF: FPGA: Recv ZSGSRD 29330 17-03-17 23:41:15.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:15.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:15.868 -07 000000438 INF: FPGA: Recv ZSGSRD 29333 17-03-17 23:41:15.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:15.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:15.878 -07 000000409 INF: FPGA: Recv ZSGSRD 29337 17-03-17 23:41:15.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:15.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:15.888 -07 000000459 INF: FPGA: Recv ZSGSRD 29329 17-03-17 23:41:15.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:15.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:15.898 -07 000000480 INF: FPGA: Recv ZSGSRD 29327 17-03-17 23:41:15.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:15.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:15.908 -07 000000541 INF: FPGA: Recv ZSGSRD 29336 17-03-17 23:41:15.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:15.918 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:41:15.918 -07 000000438 INF: FPGA: Recv ZPIEZORD 24525 17-03-17 23:41:15.928 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:15.928 -07 000000610 INF: Z Motor: Piezo is near 32.4 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.292 V. Piezo Error = -10.5 V. 17-03-17 23:41:15.928 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.7 um, Read 10 ADC samples: Avg = 29331 (-128.0 uncal um), Error = 0.8 uncal um, Median = 29332 (-128.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29326 (-127.9 uncal um), Max = 29337 (-128.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-17 23:41:15.928 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29331, posNoise = 6, negNoise = 5 17-03-17 23:41:15.928 -07 000000610 INF: Z Motor: After move to -0.128748, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:41:15.928 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms) 17-03-17 23:41:15.928 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:41:15.928 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:41:15.928 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:41:15.928 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:41:15.928 -07 000000541 INF: Disarm and arm camera sensor 0: FullImageTriggered start. 17-03-17 23:41:15.928 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:41:15.928 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:41:15.928 -07 000000541 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start. 17-03-17 23:41:15.928 -07 000000541 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms. 17-03-17 23:41:15.938 -07 000000541 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start. 17-03-17 23:41:15.948 -07 000000541 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms. 17-03-17 23:41:15.948 -07 000000541 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 17 ms. 17-03-17 23:41:15.948 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:41:16.148 -07 000000541 INF: FPGA: Recv @CAMSNAP turning led on 192 17-03-17 23:41:16.448 -07 000000547 INF: FPGA: Recv @CAMSNAP img rdy 492 17-03-17 23:41:16.448 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492 17-03-17 23:41:16.448 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start. 17-03-17 23:41:16.448 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1457648288, 0x0, 314322768) start. 17-03-17 23:41:16.638 -07 000000561 INF: FPGA: Recv @CAMSNAP 685 17-03-17 23:41:16.638 -07 000000480 INF: FPGA: Recv CAMSNAP 17-03-17 23:41:16.638 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 685 ms to get response, and 690 ms overall 17-03-17 23:41:17.038 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1457648288, 0x0, 314322768) end. Duration was 586 ms. 17-03-17 23:41:17.038 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:41:17.038 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:41:17.038 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms. 17-03-17 23:41:17.088 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:41:17.128 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:41:17.138 -07 000000610 INF: ComputeBrenner start 17-03-17 23:41:17.148 -07 000000610 INF: Image SNR check: start 17-03-17 23:41:17.158 -07 000000610 INF: Image SNR check: image is Faint [peak (Max-Min)=27.02] 17-03-17 23:41:17.158 -07 000000610 INF: Scanning Z-Position: -0.126747 17-03-17 23:41:17.158 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27688, sync = True, waitForSettling = True) 17-03-17 23:41:17.158 -07 000000610 INF: Z Motor: Moving to -0.126748 mm, started at -0.128752 mm, distance = 2.00 um 17-03-17 23:41:17.158 -07 000000610 INF: FPGA: Xmit ZDACW 27688\n [Z Motor] 17-03-17 23:41:17.158 -07 000000618 INF: FPGA: Recv ZDACW 17-03-17 23:41:17.168 -07 000000610 INF: FPGA: 'ZDACW 27688' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:41:17.168 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:41:17.168 -07 000000541 INF: FPGA: Recv ZDACR 27688 17-03-17 23:41:17.178 -07 000000610 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:17.178 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:41:17.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:17.328 -07 000000448 INF: FPGA: Recv ZSGSRD 29016 17-03-17 23:41:17.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:41:17.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:17.338 -07 000000459 INF: FPGA: Recv ZSGSRD 29021 17-03-17 23:41:17.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:17.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:17.348 -07 000000482 INF: FPGA: Recv ZSGSRD 29018 17-03-17 23:41:17.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:17.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:17.358 -07 000000512 INF: FPGA: Recv ZSGSRD 29017 17-03-17 23:41:17.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:17.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:17.368 -07 000000541 INF: FPGA: Recv ZSGSRD 29017 17-03-17 23:41:17.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:17.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:17.378 -07 000000576 INF: FPGA: Recv ZSGSRD 29018 17-03-17 23:41:17.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:17.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:17.388 -07 000000459 INF: FPGA: Recv ZSGSRD 29020 17-03-17 23:41:17.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:17.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:17.398 -07 000000482 INF: FPGA: Recv ZSGSRD 29018 17-03-17 23:41:17.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:17.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:17.408 -07 000000623 INF: FPGA: Recv ZSGSRD 29019 17-03-17 23:41:17.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:17.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:17.418 -07 000000541 INF: FPGA: Recv ZSGSRD 29021 17-03-17 23:41:17.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:17.428 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:41:17.428 -07 000000438 INF: FPGA: Recv ZPIEZORD 24259 17-03-17 23:41:17.438 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:17.438 -07 000000610 INF: Z Motor: Piezo is near 31.8 V (nominally 0 to 100 V), expect near 42.2 V, since DAC is at 4.225 V. Piezo Error = -10.4 V. 17-03-17 23:41:17.438 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.7 um, Read 10 ADC samples: Avg = 29018 (-126.0 uncal um), Error = 0.8 uncal um, Median = 29018 (-126.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 29016 (-126.0 uncal um), Max = 29021 (-126.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 2 (0.0 uncal um) 17-03-17 23:41:17.438 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29018, posNoise = 3, negNoise = 2 17-03-17 23:41:17.438 -07 000000610 INF: Z Motor: After move to -0.126748, error = 0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:41:17.438 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms) 17-03-17 23:41:17.438 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:41:17.438 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:41:17.438 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:41:17.438 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:41:17.438 -07 000000541 INF: Disarm and arm camera sensor 0: FullImageTriggered start. 17-03-17 23:41:17.438 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:41:17.438 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms. 17-03-17 23:41:17.438 -07 000000541 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start. 17-03-17 23:41:17.448 -07 000000541 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms. 17-03-17 23:41:17.448 -07 000000541 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start. 17-03-17 23:41:17.458 -07 000000541 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 9 ms. 17-03-17 23:41:17.458 -07 000000541 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms. 17-03-17 23:41:17.458 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:41:17.658 -07 000000482 INF: FPGA: Recv @CAMSNAP turning led on 192 17-03-17 23:41:17.958 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 492 17-03-17 23:41:17.958 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492 17-03-17 23:41:17.958 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start. 17-03-17 23:41:17.958 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1102499440, 0x0, 314322768) start. 17-03-17 23:41:18.148 -07 000000627 INF: FPGA: Recv @CAMSNAP 685 17-03-17 23:41:18.148 -07 000000459 INF: FPGA: Recv CAMSNAP 17-03-17 23:41:18.148 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 683 ms to get response, and 689 ms overall 17-03-17 23:41:18.538 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1102499440, 0x0, 314322768) end. Duration was 587 ms. 17-03-17 23:41:18.538 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:41:18.548 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:41:18.548 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 592 ms. 17-03-17 23:41:18.648 -07 000000610 INF: ComputeBrenner start 17-03-17 23:41:18.658 -07 000000610 INF: Image SNR check: start 17-03-17 23:41:18.668 -07 000000610 INF: Image SNR check: image is Faint [peak (Max-Min)=24.76] 17-03-17 23:41:18.668 -07 000000610 INF: Scanning Z-Position: -0.124747 17-03-17 23:41:18.668 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27251, sync = True, waitForSettling = True) 17-03-17 23:41:18.668 -07 000000610 INF: Z Motor: Moving to -0.124747 mm, started at -0.126741 mm, distance = 1.99 um 17-03-17 23:41:18.668 -07 000000610 INF: FPGA: Xmit ZDACW 27251\n [Z Motor] 17-03-17 23:41:18.668 -07 000000623 INF: FPGA: Recv ZDACW 17-03-17 23:41:18.678 -07 000000610 INF: FPGA: 'ZDACW 27251' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 23:41:18.678 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:41:18.678 -07 000000480 INF: FPGA: Recv ZDACR 27251 17-03-17 23:41:18.688 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:18.688 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:41:18.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:18.838 -07 000000459 INF: FPGA: Recv ZSGSRD 28703 17-03-17 23:41:18.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:41:18.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:18.848 -07 000000541 INF: FPGA: Recv ZSGSRD 28701 17-03-17 23:41:18.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:18.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:18.858 -07 000000475 INF: FPGA: Recv ZSGSRD 28703 17-03-17 23:41:18.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:18.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:18.868 -07 000000623 INF: FPGA: Recv ZSGSRD 28713 17-03-17 23:41:18.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:18.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:18.878 -07 000000480 INF: FPGA: Recv ZSGSRD 28704 17-03-17 23:41:18.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:18.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:18.888 -07 000000576 INF: FPGA: Recv ZSGSRD 28708 17-03-17 23:41:18.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:18.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:18.898 -07 000000541 INF: FPGA: Recv ZSGSRD 28710 17-03-17 23:41:18.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:18.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:18.908 -07 000000475 INF: FPGA: Recv ZSGSRD 28708 17-03-17 23:41:18.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:18.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:18.918 -07 000000433 INF: FPGA: Recv ZSGSRD 28707 17-03-17 23:41:18.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:18.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:18.928 -07 000000459 INF: FPGA: Recv ZSGSRD 28706 17-03-17 23:41:18.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:18.938 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:41:18.938 -07 000000482 INF: FPGA: Recv ZPIEZORD 23988 17-03-17 23:41:18.948 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:18.948 -07 000000610 INF: Z Motor: Piezo is near 31.2 V (nominally 0 to 100 V), expect near 41.6 V, since DAC is at 4.158 V. Piezo Error = -10.3 V. 17-03-17 23:41:18.948 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -124.7 um, Read 10 ADC samples: Avg = 28706 (-124.0 uncal um), Error = 0.8 uncal um, Median = 28706 (-124.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 28701 (-123.9 uncal um), Max = 28713 (-124.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-17 23:41:18.948 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 28706, posNoise = 7, negNoise = 5 17-03-17 23:41:18.948 -07 000000610 INF: Z Motor: After move to -0.124747, error = 0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:41:18.948 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms) 17-03-17 23:41:18.948 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:41:18.948 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:41:18.948 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:41:18.948 -07 000000409 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:41:18.948 -07 000000459 INF: Disarm and arm camera sensor 0: FullImageTriggered start. 17-03-17 23:41:18.948 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:41:18.948 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:41:18.948 -07 000000459 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start. 17-03-17 23:41:18.958 -07 000000459 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms. 17-03-17 23:41:18.958 -07 000000459 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start. 17-03-17 23:41:18.968 -07 000000459 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 9 ms. 17-03-17 23:41:18.968 -07 000000459 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 13 ms. 17-03-17 23:41:18.968 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:41:19.168 -07 000000486 INF: FPGA: Recv @CAMSNAP turning led on 192 17-03-17 23:41:19.468 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 492 17-03-17 23:41:19.468 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492 17-03-17 23:41:19.468 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start. 17-03-17 23:41:19.468 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1154101928, 0x0, 314322768) start. 17-03-17 23:41:19.658 -07 000000541 INF: FPGA: Recv @CAMSNAP 685 17-03-17 23:41:19.658 -07 000000618 INF: FPGA: Recv CAMSNAP 17-03-17 23:41:19.658 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 683 ms to get response, and 689 ms overall 17-03-17 23:41:19.748 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 3.983999, 17-03-17 23:41:20.048 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1154101928, 0x0, 314322768) end. Duration was 585 ms. 17-03-17 23:41:20.168 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:41:20.168 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:41:20.168 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 703 ms. 17-03-17 23:41:20.368 -07 000000610 INF: ComputeBrenner start 17-03-17 23:41:20.378 -07 000000610 INF: Image SNR check: start 17-03-17 23:41:20.388 -07 000000610 INF: Image SNR check: image is Faint [peak (Max-Min)=22.89] 17-03-17 23:41:20.388 -07 000000610 INF: Scanning Z-Position: -0.122747 17-03-17 23:41:20.388 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 26814, sync = True, waitForSettling = True) 17-03-17 23:41:20.388 -07 000000610 INF: Z Motor: Moving to -0.122747 mm, started at -0.124737 mm, distance = 1.99 um 17-03-17 23:41:20.388 -07 000000610 INF: FPGA: Xmit ZDACW 26814\n [Z Motor] 17-03-17 23:41:20.388 -07 000000512 INF: FPGA: Recv ZDACW 17-03-17 23:41:20.398 -07 000000610 INF: FPGA: 'ZDACW 26814' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:41:20.398 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:41:20.398 -07 000000576 INF: FPGA: Recv ZDACR 26814 17-03-17 23:41:20.408 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:20.408 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:41:20.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:20.558 -07 000000618 INF: FPGA: Recv ZSGSRD 28397 17-03-17 23:41:20.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:41:20.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:20.568 -07 000000480 INF: FPGA: Recv ZSGSRD 28402 17-03-17 23:41:20.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:20.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:20.578 -07 000000486 INF: FPGA: Recv ZSGSRD 28395 17-03-17 23:41:20.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:20.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:20.588 -07 000000547 INF: FPGA: Recv ZSGSRD 28394 17-03-17 23:41:20.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:20.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:20.598 -07 000000576 INF: FPGA: Recv ZSGSRD 28404 17-03-17 23:41:20.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:20.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:20.608 -07 000000482 INF: FPGA: Recv ZSGSRD 28394 17-03-17 23:41:20.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:20.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:20.618 -07 000000480 INF: FPGA: Recv ZSGSRD 28395 17-03-17 23:41:20.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:20.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:20.628 -07 000000502 INF: FPGA: Recv ZSGSRD 28402 17-03-17 23:41:20.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:20.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:20.638 -07 000000547 INF: FPGA: Recv ZSGSRD 28396 17-03-17 23:41:20.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:20.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:20.648 -07 000000576 INF: FPGA: Recv ZSGSRD 28396 17-03-17 23:41:20.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:20.658 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:41:20.658 -07 000000618 INF: FPGA: Recv ZPIEZORD 23700 17-03-17 23:41:20.668 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:20.668 -07 000000610 INF: Z Motor: Piezo is near 30.6 V (nominally 0 to 100 V), expect near 40.9 V, since DAC is at 4.092 V. Piezo Error = -10.3 V. 17-03-17 23:41:20.668 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -122.7 um, Read 10 ADC samples: Avg = 28398 (-122.0 uncal um), Error = 0.7 uncal um, Median = 28396 (-122.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 28394 (-122.0 uncal um), Max = 28404 (-122.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um) 17-03-17 23:41:20.668 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 28398, posNoise = 6, negNoise = 4 17-03-17 23:41:20.668 -07 000000610 INF: Z Motor: After move to -0.122747, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:41:20.668 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms) 17-03-17 23:41:20.668 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:41:20.668 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:41:20.668 -07 000000409 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:41:20.668 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:41:20.668 -07 000000547 INF: Disarm and arm camera sensor 0: FullImageTriggered start. 17-03-17 23:41:20.668 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:41:20.668 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:41:20.668 -07 000000547 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start. 17-03-17 23:41:20.678 -07 000000547 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms. 17-03-17 23:41:20.678 -07 000000547 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start. 17-03-17 23:41:20.688 -07 000000547 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms. 17-03-17 23:41:20.688 -07 000000547 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms. 17-03-17 23:41:20.688 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:41:20.888 -07 000000547 INF: FPGA: Recv @CAMSNAP turning led on 192 17-03-17 23:41:21.188 -07 000000486 INF: FPGA: Recv @CAMSNAP img rdy 492 17-03-17 23:41:21.188 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492 17-03-17 23:41:21.188 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start. 17-03-17 23:41:21.198 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1102499440, 0x0, 314322768) start. 17-03-17 23:41:21.378 -07 000000502 INF: FPGA: Recv @CAMSNAP 685 17-03-17 23:41:21.378 -07 000000438 INF: FPGA: Recv CAMSNAP 17-03-17 23:41:21.378 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 684 ms to get response, and 689 ms overall 17-03-17 23:41:21.778 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1102499440, 0x0, 314322768) end. Duration was 582 ms. 17-03-17 23:41:21.778 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:41:21.778 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:41:21.778 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 596 ms. 17-03-17 23:41:21.878 -07 000000610 INF: ComputeBrenner start 17-03-17 23:41:21.888 -07 000000610 INF: Image SNR check: start 17-03-17 23:41:21.898 -07 000000610 INF: Image SNR check: image is Faint [peak (Max-Min)=22.50] 17-03-17 23:41:21.898 -07 000000610 INF: Scanning Z-Position: -0.120747 17-03-17 23:41:21.898 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 26377, sync = True, waitForSettling = True) 17-03-17 23:41:21.898 -07 000000610 INF: Z Motor: Moving to -0.120746 mm, started at -0.122758 mm, distance = 2.01 um 17-03-17 23:41:21.898 -07 000000610 INF: FPGA: Xmit ZDACW 26377\n [Z Motor] 17-03-17 23:41:21.898 -07 000000486 INF: FPGA: Recv ZDACW 17-03-17 23:41:21.908 -07 000000610 INF: FPGA: 'ZDACW 26377' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:41:21.908 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:41:21.908 -07 000000438 INF: FPGA: Recv ZDACR 26377 17-03-17 23:41:21.918 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:21.918 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:41:22.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:22.068 -07 000000480 INF: FPGA: Recv ZSGSRD 28090 17-03-17 23:41:22.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:41:22.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:22.078 -07 000000547 INF: FPGA: Recv ZSGSRD 28079 17-03-17 23:41:22.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:22.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:22.088 -07 000000627 INF: FPGA: Recv ZSGSRD 28087 17-03-17 23:41:22.088 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:41:22.088 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:41:22.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:22.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:22.098 -07 000000433 INF: FPGA: Recv ZSGSRD 28087 17-03-17 23:41:22.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:22.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:22.108 -07 000000627 INF: FPGA: Recv ZSGSRD 28088 17-03-17 23:41:22.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:22.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:22.118 -07 000000623 INF: FPGA: Recv ZSGSRD 28084 17-03-17 23:41:22.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:22.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:22.128 -07 000000409 INF: FPGA: Recv ZSGSRD 28081 17-03-17 23:41:22.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:22.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:22.138 -07 000000482 INF: FPGA: Recv ZSGSRD 28085 17-03-17 23:41:22.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:22.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:22.148 -07 000000433 INF: FPGA: Recv ZSGSRD 28082 17-03-17 23:41:22.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:22.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:22.158 -07 000000448 INF: FPGA: Recv ZSGSRD 28089 17-03-17 23:41:22.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:22.168 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:41:22.168 -07 000000459 INF: FPGA: Recv ZPIEZORD 23447 17-03-17 23:41:22.178 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:22.178 -07 000000610 INF: Z Motor: Piezo is near 30.1 V (nominally 0 to 100 V), expect near 40.2 V, since DAC is at 4.025 V. Piezo Error = -10.2 V. 17-03-17 23:41:22.178 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -120.7 um, Read 10 ADC samples: Avg = 28085 (-120.0 uncal um), Error = 0.8 uncal um, Median = 28086 (-120.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 28079 (-120.0 uncal um), Max = 28090 (-120.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um) 17-03-17 23:41:22.178 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 28085, posNoise = 5, negNoise = 6 17-03-17 23:41:22.178 -07 000000610 INF: Z Motor: After move to -0.120746, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:41:22.178 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms) 17-03-17 23:41:22.178 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:41:22.178 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:41:22.178 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:41:22.178 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:41:22.178 -07 000000448 INF: Disarm and arm camera sensor 0: FullImageTriggered start. 17-03-17 23:41:22.178 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:41:22.178 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:41:22.178 -07 000000448 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start. 17-03-17 23:41:22.188 -07 000000448 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms. 17-03-17 23:41:22.188 -07 000000448 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start. 17-03-17 23:41:22.198 -07 000000448 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms. 17-03-17 23:41:22.198 -07 000000448 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms. 17-03-17 23:41:22.198 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:41:22.398 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 192 17-03-17 23:41:22.698 -07 000000433 INF: FPGA: Recv @CAMSNAP img rdy 492 17-03-17 23:41:22.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492 17-03-17 23:41:22.698 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start. 17-03-17 23:41:22.698 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) start. 17-03-17 23:41:22.888 -07 000000480 INF: FPGA: Recv @CAMSNAP 685 17-03-17 23:41:22.888 -07 000000482 INF: FPGA: Recv CAMSNAP 17-03-17 23:41:22.888 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 688 ms to get response, and 693 ms overall 17-03-17 23:41:23.288 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) end. Duration was 586 ms. 17-03-17 23:41:23.288 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:41:23.288 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:41:23.288 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms. 17-03-17 23:41:23.488 -07 000000610 INF: ComputeBrenner start 17-03-17 23:41:23.498 -07 000000610 INF: Image SNR check: start 17-03-17 23:41:23.508 -07 000000610 INF: Image SNR check: image is Faint [peak (Max-Min)=21.09] 17-03-17 23:41:23.508 -07 000000610 INF: Scanning Z-Position: -0.118747 17-03-17 23:41:23.508 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 25940, sync = True, waitForSettling = True) 17-03-17 23:41:23.508 -07 000000610 INF: Z Motor: Moving to -0.118746 mm, started at -0.120747 mm, distance = 2.00 um 17-03-17 23:41:23.508 -07 000000610 INF: FPGA: Xmit ZDACW 25940\n [Z Motor] 17-03-17 23:41:23.508 -07 000000627 INF: FPGA: Recv ZDACW 17-03-17 23:41:23.518 -07 000000610 INF: FPGA: 'ZDACW 25940' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:41:23.518 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:41:23.518 -07 000000433 INF: FPGA: Recv ZDACR 25940 17-03-17 23:41:23.528 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:23.528 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:41:23.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:23.678 -07 000000547 INF: FPGA: Recv ZSGSRD 27772 17-03-17 23:41:23.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:41:23.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:23.688 -07 000000512 INF: FPGA: Recv ZSGSRD 27775 17-03-17 23:41:23.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:23.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:23.698 -07 000000576 INF: FPGA: Recv ZSGSRD 27773 17-03-17 23:41:23.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:23.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:23.708 -07 000000480 INF: FPGA: Recv ZSGSRD 27776 17-03-17 23:41:23.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:23.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:23.718 -07 000000627 INF: FPGA: Recv ZSGSRD 27774 17-03-17 23:41:23.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:23.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:23.728 -07 000000541 INF: FPGA: Recv ZSGSRD 27779 17-03-17 23:41:23.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:23.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:23.738 -07 000000576 INF: FPGA: Recv ZSGSRD 27773 17-03-17 23:41:23.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:23.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:23.748 -07 000000486 INF: FPGA: Recv ZSGSRD 27771 17-03-17 23:41:23.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:23.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:23.758 -07 000000438 INF: FPGA: Recv ZSGSRD 27775 17-03-17 23:41:23.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:23.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:23.768 -07 000000627 INF: FPGA: Recv ZSGSRD 27770 17-03-17 23:41:23.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:23.778 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:41:23.778 -07 000000541 INF: FPGA: Recv ZPIEZORD 23183 17-03-17 23:41:23.788 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:23.788 -07 000000610 INF: Z Motor: Piezo is near 29.5 V (nominally 0 to 100 V), expect near 39.6 V, since DAC is at 3.958 V. Piezo Error = -10.1 V. 17-03-17 23:41:23.788 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -118.7 um, Read 10 ADC samples: Avg = 27774 (-118.0 uncal um), Error = 0.7 uncal um, Median = 27774 (-118.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 27770 (-118.0 uncal um), Max = 27779 (-118.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um) 17-03-17 23:41:23.788 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 27774, posNoise = 5, negNoise = 4 17-03-17 23:41:23.788 -07 000000610 INF: Z Motor: After move to -0.118746, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:41:23.788 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms) 17-03-17 23:41:23.788 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:41:23.788 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:41:23.788 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:41:23.788 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:41:23.788 -07 000000627 INF: Disarm and arm camera sensor 0: FullImageTriggered start. 17-03-17 23:41:23.788 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:41:23.788 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:41:23.788 -07 000000627 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start. 17-03-17 23:41:23.798 -07 000000627 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms. 17-03-17 23:41:23.798 -07 000000627 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start. 17-03-17 23:41:23.808 -07 000000627 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms. 17-03-17 23:41:23.808 -07 000000627 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms. 17-03-17 23:41:23.808 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:41:24.008 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 193 17-03-17 23:41:24.308 -07 000000486 INF: FPGA: Recv @CAMSNAP img rdy 493 17-03-17 23:41:24.308 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 493 17-03-17 23:41:24.308 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start. 17-03-17 23:41:24.308 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1406045800, 0x0, 314322768) start. 17-03-17 23:41:24.498 -07 000000433 INF: FPGA: Recv @CAMSNAP 685 17-03-17 23:41:24.498 -07 000000541 INF: FPGA: Recv CAMSNAP 17-03-17 23:41:24.498 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 685 ms to get response, and 689 ms overall 17-03-17 23:41:24.888 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1406045800, 0x0, 314322768) end. Duration was 583 ms. 17-03-17 23:41:24.888 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:41:24.898 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:41:24.898 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 588 ms. 17-03-17 23:41:24.998 -07 000000610 INF: ComputeBrenner start 17-03-17 23:41:25.008 -07 000000610 INF: Image SNR check: start 17-03-17 23:41:25.018 -07 000000610 INF: Image SNR check: image is Faint [peak (Max-Min)=20.38] 17-03-17 23:41:25.018 -07 000000610 INF: Scanning Z-Position: -0.116747 17-03-17 23:41:25.018 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 25503, sync = True, waitForSettling = True) 17-03-17 23:41:25.018 -07 000000610 INF: Z Motor: Moving to -0.116745 mm, started at -0.118749 mm, distance = 2.00 um 17-03-17 23:41:25.018 -07 000000610 INF: FPGA: Xmit ZDACW 25503\n [Z Motor] 17-03-17 23:41:25.018 -07 000000512 INF: FPGA: Recv ZDACW 17-03-17 23:41:25.028 -07 000000610 INF: FPGA: 'ZDACW 25503' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:41:25.028 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:41:25.028 -07 000000480 INF: FPGA: Recv ZDACR 25503 17-03-17 23:41:25.038 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:25.038 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:41:25.118 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 3.985358, 17-03-17 23:41:25.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:25.188 -07 000000433 INF: FPGA: Recv ZSGSRD 27461 17-03-17 23:41:25.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:41:25.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:25.198 -07 000000438 INF: FPGA: Recv ZSGSRD 27464 17-03-17 23:41:25.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:25.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:25.208 -07 000000541 INF: FPGA: Recv ZSGSRD 27464 17-03-17 23:41:25.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:25.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:25.228 -07 000000618 INF: FPGA: Recv ZSGSRD 27469 17-03-17 23:41:25.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-17 23:41:25.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:25.238 -07 000000547 INF: FPGA: Recv ZSGSRD 27462 17-03-17 23:41:25.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:25.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:25.248 -07 000000576 INF: FPGA: Recv ZSGSRD 27462 17-03-17 23:41:25.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:25.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:25.258 -07 000000627 INF: FPGA: Recv ZSGSRD 27469 17-03-17 23:41:25.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:25.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:25.268 -07 000000438 INF: FPGA: Recv ZSGSRD 27462 17-03-17 23:41:25.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:25.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:25.278 -07 000000502 INF: FPGA: Recv ZSGSRD 27465 17-03-17 23:41:25.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:25.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:25.288 -07 000000547 INF: FPGA: Recv ZSGSRD 27463 17-03-17 23:41:25.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:25.298 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:41:25.298 -07 000000482 INF: FPGA: Recv ZPIEZORD 22909 17-03-17 23:41:25.308 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:25.308 -07 000000610 INF: Z Motor: Piezo is near 28.9 V (nominally 0 to 100 V), expect near 38.9 V, since DAC is at 3.892 V. Piezo Error = -10.0 V. 17-03-17 23:41:25.308 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -116.7 um, Read 10 ADC samples: Avg = 27464 (-116.0 uncal um), Error = 0.7 uncal um, Median = 27464 (-116.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 27461 (-116.0 uncal um), Max = 27469 (-116.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um) 17-03-17 23:41:25.308 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 27464, posNoise = 5, negNoise = 3 17-03-17 23:41:25.308 -07 000000610 INF: Z Motor: After move to -0.116745, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:41:25.308 -07 000000610 INF: Z Motor: MoveAbsStepped took 288 ms) 17-03-17 23:41:25.308 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:41:25.308 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:41:25.308 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:41:25.308 -07 000000547 INF: Disarm and arm camera sensor 0: FullImageTriggered start. 17-03-17 23:41:25.308 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:41:25.308 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:41:25.308 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:41:25.308 -07 000000547 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start. 17-03-17 23:41:25.318 -07 000000547 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms. 17-03-17 23:41:25.318 -07 000000547 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start. 17-03-17 23:41:25.328 -07 000000547 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 9 ms. 17-03-17 23:41:25.328 -07 000000547 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 14 ms. 17-03-17 23:41:25.328 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:41:25.528 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 192 17-03-17 23:41:25.828 -07 000000482 INF: FPGA: Recv @CAMSNAP img rdy 492 17-03-17 23:41:25.828 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492 17-03-17 23:41:25.828 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start. 17-03-17 23:41:25.828 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1457648288, 0x0, 314322768) start. 17-03-17 23:41:26.018 -07 000000547 INF: FPGA: Recv @CAMSNAP 685 17-03-17 23:41:26.018 -07 000000433 INF: FPGA: Recv CAMSNAP 17-03-17 23:41:26.018 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 683 ms to get response, and 689 ms overall 17-03-17 23:41:26.408 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1457648288, 0x0, 314322768) end. Duration was 585 ms. 17-03-17 23:41:26.408 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:41:26.418 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:41:26.418 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 589 ms. 17-03-17 23:41:26.518 -07 000000610 INF: ComputeBrenner start 17-03-17 23:41:26.528 -07 000000610 INF: Image SNR check: start 17-03-17 23:41:26.538 -07 000000610 INF: Image SNR check: image is Dark [peak (Max-Min)=19.75] 17-03-17 23:41:26.538 -07 000000610 INF: Scanning Z-Position: -0.114747 17-03-17 23:41:26.538 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 25066, sync = True, waitForSettling = True) 17-03-17 23:41:26.538 -07 000000610 INF: Z Motor: Moving to -0.114745 mm, started at -0.116758 mm, distance = 2.01 um 17-03-17 23:41:26.538 -07 000000610 INF: FPGA: Xmit ZDACW 25066\n [Z Motor] 17-03-17 23:41:26.538 -07 000000433 INF: FPGA: Recv ZDACW 17-03-17 23:41:26.548 -07 000000610 INF: FPGA: 'ZDACW 25066' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:41:26.548 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:41:26.548 -07 000000459 INF: FPGA: Recv ZDACR 25066 17-03-17 23:41:26.558 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:26.558 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:41:26.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:26.708 -07 000000502 INF: FPGA: Recv ZSGSRD 27160 17-03-17 23:41:26.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:41:26.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:26.718 -07 000000486 INF: FPGA: Recv ZSGSRD 27145 17-03-17 23:41:26.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:26.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:26.728 -07 000000623 INF: FPGA: Recv ZSGSRD 27149 17-03-17 23:41:26.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:26.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:26.738 -07 000000433 INF: FPGA: Recv ZSGSRD 27156 17-03-17 23:41:26.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:26.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:26.748 -07 000000438 INF: FPGA: Recv ZSGSRD 27152 17-03-17 23:41:26.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:26.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:26.758 -07 000000502 INF: FPGA: Recv ZSGSRD 27158 17-03-17 23:41:26.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:26.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:26.768 -07 000000486 INF: FPGA: Recv ZSGSRD 27148 17-03-17 23:41:26.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:26.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:26.778 -07 000000618 INF: FPGA: Recv ZSGSRD 27154 17-03-17 23:41:26.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:26.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:26.788 -07 000000409 INF: FPGA: Recv ZSGSRD 27153 17-03-17 23:41:26.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:26.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:26.798 -07 000000541 INF: FPGA: Recv ZSGSRD 27144 17-03-17 23:41:26.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:26.808 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:41:26.808 -07 000000502 INF: FPGA: Recv ZPIEZORD 22616 17-03-17 23:41:26.818 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:26.818 -07 000000610 INF: Z Motor: Piezo is near 28.3 V (nominally 0 to 100 V), expect near 38.2 V, since DAC is at 3.825 V. Piezo Error = -9.9 V. 17-03-17 23:41:26.818 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -114.7 um, Read 10 ADC samples: Avg = 27152 (-114.0 uncal um), Error = 0.7 uncal um, Median = 27152 (-114.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 27144 (-114.0 uncal um), Max = 27160 (-114.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um) 17-03-17 23:41:26.818 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 27152, posNoise = 8, negNoise = 8 17-03-17 23:41:26.818 -07 000000610 INF: Z Motor: After move to -0.114745, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:41:26.818 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms) 17-03-17 23:41:26.818 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:41:26.818 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:41:26.818 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:41:26.818 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:41:26.818 -07 000000448 INF: Disarm and arm camera sensor 0: FullImageTriggered start. 17-03-17 23:41:26.818 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:41:26.818 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:41:26.818 -07 000000448 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start. 17-03-17 23:41:26.828 -07 000000448 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms. 17-03-17 23:41:26.828 -07 000000448 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start. 17-03-17 23:41:26.838 -07 000000448 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms. 17-03-17 23:41:26.838 -07 000000448 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms. 17-03-17 23:41:26.838 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:41:27.038 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 192 17-03-17 23:41:27.088 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:41:27.088 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:41:27.338 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 492 17-03-17 23:41:27.338 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492 17-03-17 23:41:27.338 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start. 17-03-17 23:41:27.338 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 2147487792, 0x0, 314322768) start. 17-03-17 23:41:27.528 -07 000000541 INF: FPGA: Recv @CAMSNAP 685 17-03-17 23:41:27.528 -07 000000547 INF: FPGA: Recv CAMSNAP 17-03-17 23:41:27.528 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 684 ms to get response, and 689 ms overall 17-03-17 23:41:27.928 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 2147487792, 0x0, 314322768) end. Duration was 587 ms. 17-03-17 23:41:27.928 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:41:27.928 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:41:27.928 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 592 ms. 17-03-17 23:41:28.148 -07 000000610 INF: ComputeBrenner start 17-03-17 23:41:28.158 -07 000000610 INF: Image SNR check: start 17-03-17 23:41:28.168 -07 000000610 INF: Image SNR check: image is Dark [peak (Max-Min)=19.48] 17-03-17 23:41:28.168 -07 000000610 INF: Scanning Z-Position: -0.112747 17-03-17 23:41:28.168 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 24630, sync = True, waitForSettling = True) 17-03-17 23:41:28.168 -07 000000610 INF: Z Motor: Moving to -0.112749 mm, started at -0.114754 mm, distance = 2.00 um 17-03-17 23:41:28.168 -07 000000610 INF: FPGA: Xmit ZDACW 24630\n [Z Motor] 17-03-17 23:41:28.168 -07 000000438 INF: FPGA: Recv ZDACW 17-03-17 23:41:28.178 -07 000000610 INF: FPGA: 'ZDACW 24630' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-17 23:41:28.178 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:41:28.178 -07 000000486 INF: FPGA: Recv ZDACR 24630 17-03-17 23:41:28.188 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:28.188 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:41:28.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:28.338 -07 000000547 INF: FPGA: Recv ZSGSRD 26838 17-03-17 23:41:28.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:41:28.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:28.348 -07 000000502 INF: FPGA: Recv ZSGSRD 26841 17-03-17 23:41:28.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:28.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:28.358 -07 000000480 INF: FPGA: Recv ZSGSRD 26844 17-03-17 23:41:28.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:28.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:28.368 -07 000000438 INF: FPGA: Recv ZSGSRD 26843 17-03-17 23:41:28.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:28.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:28.378 -07 000000486 INF: FPGA: Recv ZSGSRD 26843 17-03-17 23:41:28.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:28.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:28.388 -07 000000547 INF: FPGA: Recv ZSGSRD 26842 17-03-17 23:41:28.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:28.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:28.398 -07 000000561 INF: FPGA: Recv ZSGSRD 26840 17-03-17 23:41:28.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:28.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:28.408 -07 000000480 INF: FPGA: Recv ZSGSRD 26838 17-03-17 23:41:28.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:28.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:28.418 -07 000000433 INF: FPGA: Recv ZSGSRD 26843 17-03-17 23:41:28.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:28.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:28.428 -07 000000576 INF: FPGA: Recv ZSGSRD 26842 17-03-17 23:41:28.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:28.438 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:41:28.438 -07 000000475 INF: FPGA: Recv ZPIEZORD 22424 17-03-17 23:41:28.448 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:28.448 -07 000000610 INF: Z Motor: Piezo is near 27.9 V (nominally 0 to 100 V), expect near 37.6 V, since DAC is at 3.758 V. Piezo Error = -9.7 V. 17-03-17 23:41:28.448 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -112.7 um, Read 10 ADC samples: Avg = 26841 (-112.0 uncal um), Error = 0.7 uncal um, Median = 26842 (-112.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 26838 (-112.0 uncal um), Max = 26844 (-112.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um) 17-03-17 23:41:28.448 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 26841, posNoise = 3, negNoise = 3 17-03-17 23:41:28.448 -07 000000610 INF: Z Motor: After move to -0.112749, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:41:28.448 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms) 17-03-17 23:41:28.448 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:41:28.448 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:41:28.448 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:41:28.448 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:41:28.448 -07 000000576 INF: Disarm and arm camera sensor 0: FullImageTriggered start. 17-03-17 23:41:28.448 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:41:28.448 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:41:28.448 -07 000000576 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start. 17-03-17 23:41:28.458 -07 000000576 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms. 17-03-17 23:41:28.458 -07 000000576 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start. 17-03-17 23:41:28.468 -07 000000576 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms. 17-03-17 23:41:28.468 -07 000000576 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms. 17-03-17 23:41:28.468 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:41:28.668 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 192 17-03-17 23:41:28.968 -07 000000482 INF: FPGA: Recv @CAMSNAP img rdy 492 17-03-17 23:41:28.968 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492 17-03-17 23:41:28.968 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start. 17-03-17 23:41:28.968 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) start. 17-03-17 23:41:29.158 -07 000000459 INF: FPGA: Recv @CAMSNAP 685 17-03-17 23:41:29.158 -07 000000438 INF: FPGA: Recv CAMSNAP 17-03-17 23:41:29.158 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 685 ms to get response, and 689 ms overall 17-03-17 23:41:29.548 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) end. Duration was 584 ms. 17-03-17 23:41:29.548 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:41:29.558 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:41:29.558 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 589 ms. 17-03-17 23:41:29.758 -07 000000610 INF: ComputeBrenner start 17-03-17 23:41:29.768 -07 000000610 INF: Image SNR check: start 17-03-17 23:41:29.778 -07 000000610 INF: Image SNR check: image is Dark [peak (Max-Min)=19.12] 17-03-17 23:41:29.778 -07 000000610 INF: Scanning Z-Position: -0.110747 17-03-17 23:41:29.778 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 24193, sync = True, waitForSettling = True) 17-03-17 23:41:29.778 -07 000000610 INF: Z Motor: Moving to -0.110748 mm, started at -0.112756 mm, distance = 2.01 um 17-03-17 23:41:29.778 -07 000000610 INF: FPGA: Xmit ZDACW 24193\n [Z Motor] 17-03-17 23:41:29.778 -07 000000409 INF: FPGA: Recv ZDACW 17-03-17 23:41:29.788 -07 000000610 INF: FPGA: 'ZDACW 24193' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:41:29.788 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:41:29.788 -07 000000576 INF: FPGA: Recv ZDACR 24193 17-03-17 23:41:29.798 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:29.798 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:41:29.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:29.948 -07 000000502 INF: FPGA: Recv ZSGSRD 26522 17-03-17 23:41:29.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:41:29.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:29.958 -07 000000433 INF: FPGA: Recv ZSGSRD 26531 17-03-17 23:41:29.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:29.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:29.968 -07 000000618 INF: FPGA: Recv ZSGSRD 26530 17-03-17 23:41:29.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:29.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:29.978 -07 000000409 INF: FPGA: Recv ZSGSRD 26529 17-03-17 23:41:29.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:29.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:29.988 -07 000000486 INF: FPGA: Recv ZSGSRD 26530 17-03-17 23:41:29.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:29.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:29.998 -07 000000448 INF: FPGA: Recv ZSGSRD 26531 17-03-17 23:41:30.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:30.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:30.008 -07 000000433 INF: FPGA: Recv ZSGSRD 26529 17-03-17 23:41:30.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:30.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:30.018 -07 000000480 INF: FPGA: Recv ZSGSRD 26528 17-03-17 23:41:30.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:30.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:30.028 -07 000000409 INF: FPGA: Recv ZSGSRD 26528 17-03-17 23:41:30.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:30.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:30.038 -07 000000459 INF: FPGA: Recv ZSGSRD 26531 17-03-17 23:41:30.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:30.048 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:41:30.048 -07 000000482 INF: FPGA: Recv ZPIEZORD 22130 17-03-17 23:41:30.058 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:30.058 -07 000000610 INF: Z Motor: Piezo is near 27.3 V (nominally 0 to 100 V), expect near 36.9 V, since DAC is at 3.692 V. Piezo Error = -9.6 V. 17-03-17 23:41:30.058 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -110.7 um, Read 10 ADC samples: Avg = 26529 (-110.0 uncal um), Error = 0.7 uncal um, Median = 26530 (-110.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 26522 (-110.0 uncal um), Max = 26531 (-110.0 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um) 17-03-17 23:41:30.058 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 26529, posNoise = 2, negNoise = 7 17-03-17 23:41:30.058 -07 000000610 INF: Z Motor: After move to -0.110748, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:41:30.058 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms) 17-03-17 23:41:30.058 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:41:30.058 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:41:30.058 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:41:30.058 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:41:30.058 -07 000000618 INF: Disarm and arm camera sensor 0: FullImageTriggered start. 17-03-17 23:41:30.058 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:41:30.058 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:41:30.058 -07 000000618 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start. 17-03-17 23:41:30.068 -07 000000618 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms. 17-03-17 23:41:30.068 -07 000000618 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start. 17-03-17 23:41:30.078 -07 000000618 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 11 ms. 17-03-17 23:41:30.078 -07 000000618 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms. 17-03-17 23:41:30.078 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:41:30.278 -07 000000475 INF: FPGA: Recv @CAMSNAP turning led on 192 17-03-17 23:41:30.478 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 3.999021, 17-03-17 23:41:30.588 -07 000000547 INF: FPGA: Recv @CAMSNAP img rdy 495 17-03-17 23:41:30.588 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 495 17-03-17 23:41:30.588 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start. 17-03-17 23:41:30.588 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1406045800, 0x0, 314322768) start. 17-03-17 23:41:30.768 -07 000000409 INF: FPGA: Recv @CAMSNAP 685 17-03-17 23:41:30.768 -07 000000480 INF: FPGA: Recv CAMSNAP 17-03-17 23:41:30.768 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 2 ms to send, 686 ms to get response, and 689 ms overall 17-03-17 23:41:31.168 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1406045800, 0x0, 314322768) end. Duration was 586 ms. 17-03-17 23:41:31.168 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:41:31.178 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:41:31.178 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms. 17-03-17 23:41:31.468 -07 000000610 INF: ComputeBrenner start 17-03-17 23:41:31.478 -07 000000610 INF: Image SNR check: start 17-03-17 23:41:31.488 -07 000000610 INF: Image SNR check: image is Dark [peak (Max-Min)=18.88] 17-03-17 23:41:31.488 -07 000000610 INF: Scanning Z-Position: -0.108747 17-03-17 23:41:31.488 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 23756, sync = True, waitForSettling = True) 17-03-17 23:41:31.488 -07 000000610 INF: Z Motor: Moving to -0.108748 mm, started at -0.110751 mm, distance = 2.00 um 17-03-17 23:41:31.488 -07 000000610 INF: FPGA: Xmit ZDACW 23756\n [Z Motor] 17-03-17 23:41:31.488 -07 000000480 INF: FPGA: Recv ZDACW 17-03-17 23:41:31.498 -07 000000610 INF: FPGA: 'ZDACW 23756' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:41:31.498 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:41:31.498 -07 000000502 INF: FPGA: Recv ZDACR 23756 17-03-17 23:41:31.508 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:31.508 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:41:31.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:31.658 -07 000000486 INF: FPGA: Recv ZSGSRD 26221 17-03-17 23:41:31.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:41:31.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:31.668 -07 000000547 INF: FPGA: Recv ZSGSRD 26217 17-03-17 23:41:31.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:31.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:31.678 -07 000000433 INF: FPGA: Recv ZSGSRD 26223 17-03-17 23:41:31.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:31.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:31.688 -07 000000512 INF: FPGA: Recv ZSGSRD 26218 17-03-17 23:41:31.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:31.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:31.698 -07 000000448 INF: FPGA: Recv ZSGSRD 26216 17-03-17 23:41:31.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:31.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:31.708 -07 000000486 INF: FPGA: Recv ZSGSRD 26223 17-03-17 23:41:31.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:31.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:31.718 -07 000000547 INF: FPGA: Recv ZSGSRD 26223 17-03-17 23:41:31.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:31.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:31.728 -07 000000541 INF: FPGA: Recv ZSGSRD 26222 17-03-17 23:41:31.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:31.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:31.738 -07 000000475 INF: FPGA: Recv ZSGSRD 26220 17-03-17 23:41:31.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:31.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:31.748 -07 000000438 INF: FPGA: Recv ZSGSRD 26215 17-03-17 23:41:31.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:31.758 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:41:31.758 -07 000000482 INF: FPGA: Recv ZPIEZORD 21859 17-03-17 23:41:31.768 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:31.768 -07 000000610 INF: Z Motor: Piezo is near 26.7 V (nominally 0 to 100 V), expect near 36.2 V, since DAC is at 3.625 V. Piezo Error = -9.6 V. 17-03-17 23:41:31.768 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -108.7 um, Read 10 ADC samples: Avg = 26220 (-108.0 uncal um), Error = 0.7 uncal um, Median = 26220 (-108.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 26215 (-108.0 uncal um), Max = 26223 (-108.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-17 23:41:31.768 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 26220, posNoise = 3, negNoise = 5 17-03-17 23:41:31.768 -07 000000610 INF: Z Motor: After move to -0.108748, error = -0.000018, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:41:31.768 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms) 17-03-17 23:41:31.768 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:41:31.768 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:41:31.768 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:41:31.768 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:41:31.768 -07 000000438 INF: Disarm and arm camera sensor 0: FullImageTriggered start. 17-03-17 23:41:31.768 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:41:31.768 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms. 17-03-17 23:41:31.768 -07 000000438 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start. 17-03-17 23:41:31.778 -07 000000438 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 3 ms. 17-03-17 23:41:31.778 -07 000000438 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start. 17-03-17 23:41:31.788 -07 000000438 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 9 ms. 17-03-17 23:41:31.788 -07 000000438 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms. 17-03-17 23:41:31.788 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:41:31.988 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 192 17-03-17 23:41:32.088 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:41:32.088 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:41:32.288 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 492 17-03-17 23:41:32.288 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492 17-03-17 23:41:32.288 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start. 17-03-17 23:41:32.288 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1457648288, 0x0, 314322768) start. 17-03-17 23:41:32.478 -07 000000623 INF: FPGA: Recv @CAMSNAP 685 17-03-17 23:41:32.478 -07 000000409 INF: FPGA: Recv CAMSNAP 17-03-17 23:41:32.478 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 684 ms to get response, and 689 ms overall 17-03-17 23:41:32.868 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1457648288, 0x0, 314322768) end. Duration was 586 ms. 17-03-17 23:41:32.868 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:41:32.878 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:41:32.878 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms. 17-03-17 23:41:33.088 -07 000000610 INF: ComputeBrenner start 17-03-17 23:41:33.098 -07 000000610 INF: Image SNR check: start 17-03-17 23:41:33.108 -07 000000610 INF: Image SNR check: image is Dark [peak (Max-Min)=18.45] 17-03-17 23:41:33.108 -07 000000610 INF: Scanning Z-Position: -0.106747 17-03-17 23:41:33.108 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 23319, sync = True, waitForSettling = True) 17-03-17 23:41:33.108 -07 000000610 INF: Z Motor: Moving to -0.106748 mm, started at -0.108766 mm, distance = 2.02 um 17-03-17 23:41:33.108 -07 000000610 INF: FPGA: Xmit ZDACW 23319\n [Z Motor] 17-03-17 23:41:33.108 -07 000000409 INF: FPGA: Recv ZDACW 17-03-17 23:41:33.118 -07 000000610 INF: FPGA: 'ZDACW 23319' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-17 23:41:33.118 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:41:33.118 -07 000000561 INF: FPGA: Recv ZDACR 23319 17-03-17 23:41:33.128 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:33.128 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:41:33.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:33.278 -07 000000627 INF: FPGA: Recv ZSGSRD 25911 17-03-17 23:41:33.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:33.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:33.288 -07 000000547 INF: FPGA: Recv ZSGSRD 25912 17-03-17 23:41:33.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:33.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:33.298 -07 000000482 INF: FPGA: Recv ZSGSRD 25908 17-03-17 23:41:33.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:33.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:33.308 -07 000000433 INF: FPGA: Recv ZSGSRD 25911 17-03-17 23:41:33.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:33.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:33.318 -07 000000475 INF: FPGA: Recv ZSGSRD 25911 17-03-17 23:41:33.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:33.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:33.328 -07 000000627 INF: FPGA: Recv ZSGSRD 25910 17-03-17 23:41:33.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:33.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:33.338 -07 000000547 INF: FPGA: Recv ZSGSRD 25912 17-03-17 23:41:33.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:33.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:33.348 -07 000000512 INF: FPGA: Recv ZSGSRD 25908 17-03-17 23:41:33.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:33.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:33.358 -07 000000433 INF: FPGA: Recv ZSGSRD 25903 17-03-17 23:41:33.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:33.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:33.368 -07 000000618 INF: FPGA: Recv ZSGSRD 25909 17-03-17 23:41:33.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:33.378 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:41:33.378 -07 000000438 INF: FPGA: Recv ZPIEZORD 21626 17-03-17 23:41:33.388 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:33.388 -07 000000610 INF: Z Motor: Piezo is near 26.2 V (nominally 0 to 100 V), expect near 35.6 V, since DAC is at 3.558 V. Piezo Error = -9.4 V. 17-03-17 23:41:33.388 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -106.7 um, Read 10 ADC samples: Avg = 25910 (-106.1 uncal um), Error = 0.7 uncal um, Median = 25910 (-106.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 25903 (-106.0 uncal um), Max = 25912 (-106.1 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um) 17-03-17 23:41:33.388 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 25910, posNoise = 2, negNoise = 7 17-03-17 23:41:33.388 -07 000000610 INF: Z Motor: After move to -0.106748, error = -0.000027, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:41:33.388 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms) 17-03-17 23:41:33.388 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:41:33.388 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:41:33.388 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:41:33.388 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:41:33.388 -07 000000486 INF: Disarm and arm camera sensor 0: FullImageTriggered start. 17-03-17 23:41:33.388 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:41:33.398 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:41:33.398 -07 000000486 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start. 17-03-17 23:41:33.398 -07 000000486 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms. 17-03-17 23:41:33.398 -07 000000486 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start. 17-03-17 23:41:33.408 -07 000000486 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms. 17-03-17 23:41:33.408 -07 000000486 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 14 ms. 17-03-17 23:41:33.408 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:41:33.608 -07 000000486 INF: FPGA: Recv @CAMSNAP turning led on 195 17-03-17 23:41:33.908 -07 000000475 INF: FPGA: Recv @CAMSNAP img rdy 495 17-03-17 23:41:33.908 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 495 17-03-17 23:41:33.908 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start. 17-03-17 23:41:33.908 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) start. 17-03-17 23:41:34.098 -07 000000486 INF: FPGA: Recv @CAMSNAP 685 17-03-17 23:41:34.098 -07 000000541 INF: FPGA: Recv CAMSNAP 17-03-17 23:41:34.098 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 688 ms to get response, and 692 ms overall 17-03-17 23:41:34.498 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 639799168, 0x0, 314322768) end. Duration was 587 ms. 17-03-17 23:41:34.498 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:41:34.498 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:41:34.498 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 591 ms. 17-03-17 23:41:34.698 -07 000000610 INF: ComputeBrenner start 17-03-17 23:41:34.708 -07 000000610 INF: Image SNR check: start 17-03-17 23:41:34.718 -07 000000610 INF: Image SNR check: image is Dark [peak (Max-Min)=18.26] 17-03-17 23:41:34.718 -07 000000610 INF: Scanning Z-Position: -0.104747 17-03-17 23:41:34.718 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 22882, sync = True, waitForSettling = True) 17-03-17 23:41:34.718 -07 000000610 INF: Z Motor: Moving to -0.104747 mm, started at -0.106775 mm, distance = 2.03 um 17-03-17 23:41:34.718 -07 000000610 INF: FPGA: Xmit ZDACW 22882\n [Z Motor] 17-03-17 23:41:34.718 -07 000000409 INF: FPGA: Recv ZDACW 17-03-17 23:41:34.728 -07 000000610 INF: FPGA: 'ZDACW 22882' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:41:34.728 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:41:34.728 -07 000000459 INF: FPGA: Recv ZDACR 22882 17-03-17 23:41:34.738 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:34.738 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:41:34.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:34.888 -07 000000541 INF: FPGA: Recv ZSGSRD 25597 17-03-17 23:41:34.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:41:34.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:34.898 -07 000000627 INF: FPGA: Recv ZSGSRD 25599 17-03-17 23:41:34.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:34.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:34.908 -07 000000475 INF: FPGA: Recv ZSGSRD 25598 17-03-17 23:41:34.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:34.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:34.918 -07 000000512 INF: FPGA: Recv ZSGSRD 25600 17-03-17 23:41:34.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:34.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:34.928 -07 000000502 INF: FPGA: Recv ZSGSRD 25594 17-03-17 23:41:34.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:34.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:34.938 -07 000000576 INF: FPGA: Recv ZSGSRD 25603 17-03-17 23:41:34.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:34.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:34.948 -07 000000486 INF: FPGA: Recv ZSGSRD 25600 17-03-17 23:41:34.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:34.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:34.958 -07 000000623 INF: FPGA: Recv ZSGSRD 25598 17-03-17 23:41:34.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:34.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:34.968 -07 000000512 INF: FPGA: Recv ZSGSRD 25596 17-03-17 23:41:34.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:34.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:34.978 -07 000000433 INF: FPGA: Recv ZSGSRD 25596 17-03-17 23:41:34.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:34.988 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:41:34.988 -07 000000576 INF: FPGA: Recv ZPIEZORD 21354 17-03-17 23:41:34.998 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:34.998 -07 000000610 INF: Z Motor: Piezo is near 25.6 V (nominally 0 to 100 V), expect near 34.9 V, since DAC is at 3.492 V. Piezo Error = -9.3 V. 17-03-17 23:41:34.998 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -104.7 um, Read 10 ADC samples: Avg = 25598 (-104.1 uncal um), Error = 0.7 uncal um, Median = 25598 (-104.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 25594 (-104.0 uncal um), Max = 25603 (-104.1 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um) 17-03-17 23:41:34.998 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 25598, posNoise = 5, negNoise = 4 17-03-17 23:41:34.998 -07 000000610 INF: Z Motor: After move to -0.104747, error = -0.000023, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:41:34.998 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms) 17-03-17 23:41:34.998 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:41:34.998 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:41:34.998 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:41:34.998 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:41:34.998 -07 000000409 INF: Disarm and arm camera sensor 0: FullImageTriggered start. 17-03-17 23:41:34.998 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:41:34.998 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:41:34.998 -07 000000409 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start. 17-03-17 23:41:35.008 -07 000000409 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms. 17-03-17 23:41:35.008 -07 000000409 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start. 17-03-17 23:41:35.018 -07 000000409 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms. 17-03-17 23:41:35.018 -07 000000409 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 15 ms. 17-03-17 23:41:35.018 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:41:35.218 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 192 17-03-17 23:41:35.518 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 492 17-03-17 23:41:35.518 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492 17-03-17 23:41:35.518 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start. 17-03-17 23:41:35.518 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1406045800, 0x0, 314322768) start. 17-03-17 23:41:35.708 -07 000000541 INF: FPGA: Recv @CAMSNAP 686 17-03-17 23:41:35.708 -07 000000459 INF: FPGA: Recv CAMSNAP 17-03-17 23:41:35.708 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 686 ms to get response, and 691 ms overall 17-03-17 23:41:35.838 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 4.0344, 17-03-17 23:41:36.098 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1406045800, 0x0, 314322768) end. Duration was 582 ms. 17-03-17 23:41:36.098 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:41:36.098 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:41:36.098 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 586 ms. 17-03-17 23:41:36.208 -07 000000610 INF: ComputeBrenner start 17-03-17 23:41:36.218 -07 000000610 INF: Image SNR check: start 17-03-17 23:41:36.228 -07 000000610 INF: Image SNR check: image is Dark [peak (Max-Min)=18.17] 17-03-17 23:41:36.228 -07 000000610 INF: Scanning Z-Position: -0.102747 17-03-17 23:41:36.228 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 22445, sync = True, waitForSettling = True) 17-03-17 23:41:36.228 -07 000000610 INF: Z Motor: Moving to -0.102747 mm, started at -0.104770 mm, distance = 2.02 um 17-03-17 23:41:36.228 -07 000000610 INF: FPGA: Xmit ZDACW 22445\n [Z Motor] 17-03-17 23:41:36.228 -07 000000512 INF: FPGA: Recv ZDACW 17-03-17 23:41:36.238 -07 000000610 INF: FPGA: 'ZDACW 22445' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:41:36.238 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:41:36.238 -07 000000480 INF: FPGA: Recv ZDACR 22445 17-03-17 23:41:36.248 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:36.248 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:41:36.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:36.398 -07 000000512 INF: FPGA: Recv ZSGSRD 25287 17-03-17 23:41:36.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:41:36.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:36.408 -07 000000433 INF: FPGA: Recv ZSGSRD 25287 17-03-17 23:41:36.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:36.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:36.418 -07 000000482 INF: FPGA: Recv ZSGSRD 25289 17-03-17 23:41:36.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:36.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:36.428 -07 000000623 INF: FPGA: Recv ZSGSRD 25283 17-03-17 23:41:36.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:41:36.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:36.438 -07 000000541 INF: FPGA: Recv ZSGSRD 25286 17-03-17 23:41:36.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:36.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:36.448 -07 000000576 INF: FPGA: Recv ZSGSRD 25289 17-03-17 23:41:36.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:36.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:36.458 -07 000000512 INF: FPGA: Recv ZSGSRD 25291 17-03-17 23:41:36.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:36.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:36.468 -07 000000438 INF: FPGA: Recv ZSGSRD 25289 17-03-17 23:41:36.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:36.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:36.478 -07 000000618 INF: FPGA: Recv ZSGSRD 25285 17-03-17 23:41:36.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:36.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:36.488 -07 000000448 INF: FPGA: Recv ZSGSRD 25288 17-03-17 23:41:36.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:36.498 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:41:36.498 -07 000000623 INF: FPGA: Recv ZPIEZORD 21076 17-03-17 23:41:36.508 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:36.508 -07 000000610 INF: Z Motor: Piezo is near 25.0 V (nominally 0 to 100 V), expect near 34.2 V, since DAC is at 3.425 V. Piezo Error = -9.2 V. 17-03-17 23:41:36.508 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -102.7 um, Read 10 ADC samples: Avg = 25287 (-102.1 uncal um), Error = 0.7 uncal um, Median = 25288 (-102.1 uncal um), StdDev = 2 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 25283 (-102.0 uncal um), Max = 25291 (-102.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um) 17-03-17 23:41:36.508 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 25287, posNoise = 4, negNoise = 4 17-03-17 23:41:36.508 -07 000000610 INF: Z Motor: After move to -0.102747, error = -0.000026, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:41:36.508 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms) 17-03-17 23:41:36.508 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:41:36.508 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:41:36.508 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:41:36.508 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:41:36.508 -07 000000448 INF: Disarm and arm camera sensor 0: FullImageTriggered start. 17-03-17 23:41:36.508 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:41:36.508 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:41:36.508 -07 000000448 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start. 17-03-17 23:41:36.518 -07 000000448 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 4 ms. 17-03-17 23:41:36.518 -07 000000448 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start. 17-03-17 23:41:36.528 -07 000000448 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 10 ms. 17-03-17 23:41:36.528 -07 000000448 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 16 ms. 17-03-17 23:41:36.528 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:41:36.728 -07 000000448 INF: FPGA: Recv @CAMSNAP turning led on 192 17-03-17 23:41:37.028 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 492 17-03-17 23:41:37.028 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492 17-03-17 23:41:37.028 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start. 17-03-17 23:41:37.028 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1457648288, 0x0, 314322768) start. 17-03-17 23:41:37.088 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:41:37.218 -07 000000623 INF: FPGA: Recv @CAMSNAP 685 17-03-17 23:41:37.218 -07 000000547 INF: FPGA: Recv CAMSNAP 17-03-17 23:41:37.218 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 684 ms to get response, and 689 ms overall 17-03-17 23:41:37.608 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1457648288, 0x0, 314322768) end. Duration was 584 ms. 17-03-17 23:41:37.608 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:41:37.618 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:41:37.618 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 589 ms. 17-03-17 23:41:37.728 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:41:37.818 -07 000000610 INF: ComputeBrenner start 17-03-17 23:41:37.828 -07 000000610 INF: Image SNR check: start 17-03-17 23:41:37.838 -07 000000610 INF: Image SNR check: image is Dark [peak (Max-Min)=17.66] 17-03-17 23:41:37.838 -07 000000610 INF: Scanning Z-Position: -0.100747 17-03-17 23:41:37.838 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 22008, sync = True, waitForSettling = True) 17-03-17 23:41:37.838 -07 000000610 INF: Z Motor: Moving to -0.100746 mm, started at -0.102772 mm, distance = 2.03 um 17-03-17 23:41:37.838 -07 000000610 INF: FPGA: Xmit ZDACW 22008\n [Z Motor] 17-03-17 23:41:37.838 -07 000000482 INF: FPGA: Recv ZDACW 17-03-17 23:41:37.848 -07 000000610 INF: FPGA: 'ZDACW 22008' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 23:41:37.848 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:41:37.848 -07 000000486 INF: FPGA: Recv ZDACR 22008 17-03-17 23:41:37.858 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:37.858 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:41:38.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:38.008 -07 000000459 INF: FPGA: Recv ZSGSRD 24970 17-03-17 23:41:38.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:41:38.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:38.018 -07 000000480 INF: FPGA: Recv ZSGSRD 24973 17-03-17 23:41:38.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:38.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:38.028 -07 000000409 INF: FPGA: Recv ZSGSRD 24980 17-03-17 23:41:38.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:38.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:38.038 -07 000000482 INF: FPGA: Recv ZSGSRD 24975 17-03-17 23:41:38.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:38.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:38.048 -07 000000486 INF: FPGA: Recv ZSGSRD 24976 17-03-17 23:41:38.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:38.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:38.058 -07 000000459 INF: FPGA: Recv ZSGSRD 24970 17-03-17 23:41:38.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:38.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:38.068 -07 000000480 INF: FPGA: Recv ZSGSRD 24972 17-03-17 23:41:38.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:38.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:38.078 -07 000000576 INF: FPGA: Recv ZSGSRD 24977 17-03-17 23:41:38.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:38.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:38.088 -07 000000561 INF: FPGA: Recv ZSGSRD 24972 17-03-17 23:41:38.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:38.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:38.098 -07 000000627 INF: FPGA: Recv ZSGSRD 24976 17-03-17 23:41:38.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:38.108 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:41:38.108 -07 000000541 INF: FPGA: Recv ZPIEZORD 20836 17-03-17 23:41:38.118 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:38.118 -07 000000610 INF: Z Motor: Piezo is near 24.5 V (nominally 0 to 100 V), expect near 33.6 V, since DAC is at 3.358 V. Piezo Error = -9.1 V. 17-03-17 23:41:38.118 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -100.7 um, Read 10 ADC samples: Avg = 24974 (-100.1 uncal um), Error = 0.7 uncal um, Median = 24974 (-100.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 24970 (-100.0 uncal um), Max = 24980 (-100.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um) 17-03-17 23:41:38.118 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 24974, posNoise = 6, negNoise = 4 17-03-17 23:41:38.118 -07 000000610 INF: Z Motor: After move to -0.100746, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:41:38.118 -07 000000610 INF: Z Motor: MoveAbsStepped took 277 ms) 17-03-17 23:41:38.118 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:41:38.118 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:41:38.118 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:41:38.118 -07 000000627 INF: Disarm and arm camera sensor 0: FullImageTriggered start. 17-03-17 23:41:38.118 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:41:38.118 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:41:38.118 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms. 17-03-17 23:41:38.118 -07 000000627 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start. 17-03-17 23:41:38.128 -07 000000627 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms. 17-03-17 23:41:38.128 -07 000000627 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start. 17-03-17 23:41:38.128 -07 000000627 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 6 ms. 17-03-17 23:41:38.128 -07 000000627 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 12 ms. 17-03-17 23:41:38.138 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:41:38.328 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 192 17-03-17 23:41:38.628 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 492 17-03-17 23:41:38.628 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492 17-03-17 23:41:38.628 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start. 17-03-17 23:41:38.628 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1102499440, 0x0, 314322768) start. 17-03-17 23:41:38.818 -07 000000627 INF: FPGA: Recv @CAMSNAP 685 17-03-17 23:41:38.828 -07 000000482 INF: FPGA: Recv CAMSNAP 17-03-17 23:41:38.828 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 680 ms to get response, and 689 ms overall 17-03-17 23:41:39.218 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1102499440, 0x0, 314322768) end. Duration was 584 ms. 17-03-17 23:41:39.218 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:41:39.218 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:41:39.218 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 588 ms. 17-03-17 23:41:39.428 -07 000000610 INF: ComputeBrenner start 17-03-17 23:41:39.438 -07 000000610 INF: Image SNR check: start 17-03-17 23:41:39.448 -07 000000610 INF: Image SNR check: image is Dark [peak (Max-Min)=17.54] 17-03-17 23:41:39.448 -07 000000610 INF: Scanning Z-Position: -0.098747 17-03-17 23:41:39.448 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 21571, sync = True, waitForSettling = True) 17-03-17 23:41:39.448 -07 000000610 INF: Z Motor: Moving to -0.098746 mm, started at -0.100762 mm, distance = 2.02 um 17-03-17 23:41:39.448 -07 000000610 INF: FPGA: Xmit ZDACW 21571\n [Z Motor] 17-03-17 23:41:39.448 -07 000000482 INF: FPGA: Recv ZDACW 17-03-17 23:41:39.458 -07 000000610 INF: FPGA: 'ZDACW 21571' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-17 23:41:39.458 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:41:39.458 -07 000000438 INF: FPGA: Recv ZDACR 21571 17-03-17 23:41:39.468 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:39.468 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:41:39.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:39.618 -07 000000459 INF: FPGA: Recv ZSGSRD 24666 17-03-17 23:41:39.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:41:39.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:39.628 -07 000000502 INF: FPGA: Recv ZSGSRD 24663 17-03-17 23:41:39.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:39.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:39.638 -07 000000512 INF: FPGA: Recv ZSGSRD 24658 17-03-17 23:41:39.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:39.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:39.648 -07 000000480 INF: FPGA: Recv ZSGSRD 24665 17-03-17 23:41:39.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:39.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:39.658 -07 000000433 INF: FPGA: Recv ZSGSRD 24665 17-03-17 23:41:39.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:39.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:39.668 -07 000000618 INF: FPGA: Recv ZSGSRD 24671 17-03-17 23:41:39.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:39.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:39.678 -07 000000627 INF: FPGA: Recv ZSGSRD 24663 17-03-17 23:41:39.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:39.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:39.688 -07 000000512 INF: FPGA: Recv ZSGSRD 24660 17-03-17 23:41:39.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:39.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:39.698 -07 000000459 INF: FPGA: Recv ZSGSRD 24664 17-03-17 23:41:39.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:39.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:39.708 -07 000000448 INF: FPGA: Recv ZSGSRD 24662 17-03-17 23:41:39.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:39.718 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:41:39.718 -07 000000502 INF: FPGA: Recv ZPIEZORD 20634 17-03-17 23:41:39.728 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:39.728 -07 000000610 INF: Z Motor: Piezo is near 24.1 V (nominally 0 to 100 V), expect near 32.9 V, since DAC is at 3.292 V. Piezo Error = -8.8 V. 17-03-17 23:41:39.728 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -98.7 um, Read 10 ADC samples: Avg = 24664 (-98.1 uncal um), Error = 0.7 uncal um, Median = 24664 (-98.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 24658 (-98.0 uncal um), Max = 24671 (-98.1 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um) 17-03-17 23:41:39.728 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 24664, posNoise = 7, negNoise = 6 17-03-17 23:41:39.728 -07 000000610 INF: Z Motor: After move to -0.098746, error = -0.000024, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:41:39.728 -07 000000610 INF: Z Motor: MoveAbsStepped took 275 ms) 17-03-17 23:41:39.728 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:41:39.728 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:41:39.728 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:41:39.728 -07 000000448 INF: Disarm and arm camera sensor 0: FullImageTriggered start. 17-03-17 23:41:39.728 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:41:39.728 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:41:39.728 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:41:39.728 -07 000000448 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) start. 17-03-17 23:41:39.738 -07 000000448 INF: Camera: sBCa_DisarmCaptureFullImageTriggered(785074288) end. Duration was 2 ms. 17-03-17 23:41:39.738 -07 000000448 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) start. 17-03-17 23:41:39.748 -07 000000448 INF: Camera: sBCa_ArmCaptureFullImageTriggered(785074288, 255) end. Duration was 9 ms. 17-03-17 23:41:39.748 -07 000000448 INF: Disarm and arm camera sensor 0: FullImageTriggered end. Duration was 13 ms. 17-03-17 23:41:39.748 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:41:39.948 -07 000000448 INF: FPGA: Recv @CAMSNAP turning led on 192 17-03-17 23:41:40.248 -07 000000482 INF: FPGA: Recv @CAMSNAP img rdy 492 17-03-17 23:41:40.248 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 492 17-03-17 23:41:40.248 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. start. 17-03-17 23:41:40.248 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1154101928, 0x0, 314322768) start. 17-03-17 23:41:40.438 -07 000000547 INF: FPGA: Recv @CAMSNAP 685 17-03-17 23:41:40.438 -07 000000627 INF: FPGA: Recv CAMSNAP 17-03-17 23:41:40.438 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 683 ms to get response, and 689 ms overall 17-03-17 23:41:40.828 -07 000000005 INF: Camera: sBCa_ReadFullImage(785074288, 1154101928, 0x0, 314322768) end. Duration was 587 ms. 17-03-17 23:41:40.828 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:41:40.838 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:41:40.838 -07 000000005 INF: Camera 1: ReadFullImage (data transfer) from sensor 0. end. Duration was 592 ms. 17-03-17 23:41:41.098 -07 000000610 INF: ComputeBrenner start 17-03-17 23:41:41.108 -07 000000610 INF: Image SNR check: start 17-03-17 23:41:41.118 -07 000000610 INF: Image SNR check: image is Dark [peak (Max-Min)=17.28] 17-03-17 23:41:41.118 -07 000000610 INF: Through-focus: Z pos. [um] vs. Focus metric 17-03-17 23:41:41.118 -07 000000610 INF: -178.747 2.139251 17-03-17 23:41:41.118 -07 000000610 INF: -176.747 2.14255 17-03-17 23:41:41.118 -07 000000610 INF: -174.747 2.143013 17-03-17 23:41:41.118 -07 000000610 INF: -172.747 2.149194 17-03-17 23:41:41.118 -07 000000610 INF: -170.747 2.143503 17-03-17 23:41:41.118 -07 000000610 INF: -168.747 2.138476 17-03-17 23:41:41.118 -07 000000610 INF: -166.747 2.150173 17-03-17 23:41:41.118 -07 000000610 INF: -164.747 2.146897 17-03-17 23:41:41.118 -07 000000610 INF: -162.747 2.144624 17-03-17 23:41:41.118 -07 000000610 INF: -160.747 2.141208 17-03-17 23:41:41.118 -07 000000610 INF: -158.747 2.150481 17-03-17 23:41:41.118 -07 000000610 INF: -156.747 2.142673 17-03-17 23:41:41.118 -07 000000610 INF: -154.747 2.14363 17-03-17 23:41:41.118 -07 000000610 INF: -152.747 2.136459 17-03-17 23:41:41.118 -07 000000610 INF: -150.747 2.147536 17-03-17 23:41:41.118 -07 000000610 INF: -148.747 2.142912 17-03-17 23:41:41.118 -07 000000610 INF: -146.747 2.14812 17-03-17 23:41:41.118 -07 000000610 INF: -144.747 2.155561 17-03-17 23:41:41.118 -07 000000610 INF: -142.747 2.156206 17-03-17 23:41:41.118 -07 000000610 INF: -140.747 2.167392 17-03-17 23:41:41.118 -07 000000610 INF: -138.747 2.215285 17-03-17 23:41:41.118 -07 000000610 INF: -136.747 2.419373 17-03-17 23:41:41.118 -07 000000610 INF: -134.747 4.528192 17-03-17 23:41:41.118 -07 000000610 INF: -132.747 5.181301 17-03-17 23:41:41.118 -07 000000610 INF: -130.747 2.348686 17-03-17 23:41:41.118 -07 000000610 INF: -128.747 2.167811 17-03-17 23:41:41.118 -07 000000610 INF: -126.747 2.150738 17-03-17 23:41:41.118 -07 000000610 INF: -124.747 2.140514 17-03-17 23:41:41.118 -07 000000610 INF: -122.747 2.144364 17-03-17 23:41:41.118 -07 000000610 INF: -120.747 2.147158 17-03-17 23:41:41.118 -07 000000610 INF: -118.747 2.146427 17-03-17 23:41:41.118 -07 000000610 INF: -116.747 2.144252 17-03-17 23:41:41.118 -07 000000610 INF: -114.747 2.151573 17-03-17 23:41:41.118 -07 000000610 INF: -112.747 2.150759 17-03-17 23:41:41.118 -07 000000610 INF: -110.747 2.150392 17-03-17 23:41:41.118 -07 000000610 INF: -108.747 2.146616 17-03-17 23:41:41.118 -07 000000610 INF: -106.747 2.144824 17-03-17 23:41:41.118 -07 000000610 INF: -104.747 2.142565 17-03-17 23:41:41.118 -07 000000610 INF: -102.747 2.147822 17-03-17 23:41:41.118 -07 000000610 INF: -100.747 2.147267 17-03-17 23:41:41.118 -07 000000610 INF: -98.747 2.153266 17-03-17 23:41:41.118 -07 000000610 INF: Best-focus Z [um]: -133.6723 17-03-17 23:41:41.118 -07 000000610 INF: =================== Cycle #77, Imaging =================== 17-03-17 23:41:41.118 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 59.91015625, Z-Position -0.0987701202755273. ------ 17-03-17 23:41:41.118 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:41:41.118 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.13967 mm 17-03-17 23:41:41.118 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 23:41:41.128 -07 000000448 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:41:41.128 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall 17-03-17 23:41:41.128 -07 000000433 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 23:41:41.128 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True) 17-03-17 23:41:41.128 -07 000000541 INF: Y Motor: Moving to 59.9126 mm, started at 59.9102 mm, delta = 0.0025 mm 17-03-17 23:41:41.128 -07 000000459 INF: Z Motor: Entering MoveAbsStepped (DAC = 30511, sync = True, waitForSettling = False) 17-03-17 23:41:41.128 -07 000000459 INF: Z Motor: Moving to -0.139670 mm, started at -0.098770 mm, distance = -40.90 um 17-03-17 23:41:41.138 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:41:41.138 -07 000000618 INF: FPGA: Recv YRDPOS 122696 17-03-17 23:41:41.148 -07 000000459 INF: FPGA: Xmit ZDACW 30511\n [Z Motor] 17-03-17 23:41:41.148 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall 17-03-17 23:41:41.148 -07 000000541 INF: Y Motor: Encoder = 122696 = motor step 95856.3 = 59.9102 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:41:41.148 -07 000000541 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.0000 mm (0.0 steps). UsingTableMove = False 17-03-17 23:41:41.148 -07 000000541 INF: Y Motor: Moving to 122701 encoder counts 17-03-17 23:41:41.148 -07 000000561 INF: FPGA: Recv ZDACW 17-03-17 23:41:41.158 -07 000000459 INF: FPGA: 'ZDACW 30511' command took 0 ms to send, 0 ms to get response, and 25 ms overall 17-03-17 23:41:41.158 -07 000000541 INF: FPGA: Xmit YMVTO 122701\n [Y Motor] 17-03-17 23:41:41.168 -07 000000459 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:41:41.168 -07 000000475 INF: FPGA: Recv ZDACR 30511 17-03-17 23:41:41.178 -07 000000459 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-17 23:41:41.178 -07 000000459 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet)) 17-03-17 23:41:41.198 -07 000000627 INF: FPGA: Recv YMVTO 122700 10 17-03-17 23:41:41.198 -07 000000541 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 30 ms to get response, and 49 ms overall 17-03-17 23:41:41.198 -07 000000541 INF: Y Motor: Position error before settling = -1 encoder counts (0.000 mm) 17-03-17 23:41:41.198 -07 000000541 INF: Y Motor: To move from 59.910 to 59.913 (0.002 mm) should take 4 steps, but required 10 steps (0.006 mm). Slippage = 0.004 mm (1.53%). 17-03-17 23:41:41.198 -07 000000541 INF: Y Motor: FPGA move command 'YMVTO 122701' took 49 ms, distance = 0.002 mm, average velocity = 0.050 mm/sec 17-03-17 23:41:41.308 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 4.019446, 17-03-17 23:41:41.328 -07 000000627 INF: FPGA: Recv FOCMRRFOC 17-03-17 23:41:41.328 -07 000000433 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 203 ms overall 17-03-17 23:41:42.088 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:41:42.088 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:41:44.048 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:41:44.048 -07 000000433 INF: FPGA: Recv YRDPOS 122709 17-03-17 23:41:44.058 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:41:44.058 -07 000000541 INF: Y Motor: Encoder = 122709 = motor step 95866.4 = 59.9165 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:41:44.068 -07 000000541 INF: Y Motor: After move to 59.912609, error = 0.003895, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 23:41:44.068 -07 000000541 INF: Y Motor: Position error after settling = 8 encoder counts (0.004 mm), Delta during settling = 9 counts (0.004 mm) 17-03-17 23:41:44.068 -07 000000541 INF: Y Motor: Moved to 59.9165 after 2942 ms 17-03-17 23:41:44.078 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139670 mm (DAC = 30511) 17-03-17 23:41:44.078 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:44.078 -07 000000448 INF: FPGA: Recv ZSGSRD 31036 17-03-17 23:41:44.088 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:41:44.088 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:44.088 -07 000000576 INF: FPGA: Recv ZSGSRD 31034 17-03-17 23:41:44.098 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:44.098 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:44.098 -07 000000475 INF: FPGA: Recv ZSGSRD 31028 17-03-17 23:41:44.108 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:44.108 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:44.108 -07 000000623 INF: FPGA: Recv ZSGSRD 31032 17-03-17 23:41:44.118 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:44.118 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:44.118 -07 000000547 INF: FPGA: Recv ZSGSRD 31035 17-03-17 23:41:44.128 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:44.128 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:44.128 -07 000000459 INF: FPGA: Recv ZSGSRD 31033 17-03-17 23:41:44.138 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:44.138 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:44.138 -07 000000409 INF: FPGA: Recv ZSGSRD 31031 17-03-17 23:41:44.148 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:44.148 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:44.148 -07 000000448 INF: FPGA: Recv ZSGSRD 31031 17-03-17 23:41:44.158 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:44.158 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:44.158 -07 000000541 INF: FPGA: Recv ZSGSRD 31028 17-03-17 23:41:44.168 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:44.168 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:44.168 -07 000000459 INF: FPGA: Recv ZSGSRD 31036 17-03-17 23:41:44.178 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:44.178 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:41:44.178 -07 000000433 INF: FPGA: Recv ZPIEZORD 27753 17-03-17 23:41:44.188 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:44.188 -07 000000480 INF: Z Motor: Piezo is near 39.3 V (nominally 0 to 100 V), expect near 46.6 V, since DAC is at 4.656 V. Piezo Error = -7.3 V. 17-03-17 23:41:44.188 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.7 um, Read 10 ADC samples: Avg = 31032 (-138.9 uncal um), Error = 0.8 uncal um, Median = 31032 (-138.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 31028 (-138.9 uncal um), Max = 31036 (-138.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um) 17-03-17 23:41:44.188 -07 000000480 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31032, posNoise = 4, negNoise = 4 17-03-17 23:41:44.188 -07 000000480 INF: Z Motor: After move to -0.139670, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:41:44.188 -07 000000480 INF: Z Motor: Settle wait time = 2945 ms, measure time = 111 ms (allowed 150 ms), total time = 3056 ms 17-03-17 23:41:44.188 -07 000000480 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms 17-03-17 23:41:44.228 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 3101 ms 17-03-17 23:41:44.228 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 23:41:44.228 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:41:44.228 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:41:44.228 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:41:44.228 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:41:44.228 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 23:41:44.228 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:41:44.238 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:41:44.238 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 23:41:44.238 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-17 23:41:44.238 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 23:41:44.248 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms. 17-03-17 23:41:44.248 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms. 17-03-17 23:41:44.248 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:41:44.298 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 23:41:44.598 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-17 23:41:44.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-17 23:41:44.598 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 23:41:44.598 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 618915624, 0x0, 559484976) start. 17-03-17 23:41:44.628 -07 000000480 INF: FPGA: Recv @CAMSNAP 380 17-03-17 23:41:44.638 -07 000000512 INF: FPGA: Recv CAMSNAP 17-03-17 23:41:44.638 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 385 ms overall 17-03-17 23:41:44.718 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 618915624, 0x0, 559484976) end. Duration was 127 ms. 17-03-17 23:41:44.728 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:41:44.728 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-17 23:41:44.728 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms. 17-03-17 23:41:44.738 -07 000000486 INF: Image SNR check: start 17-03-17 23:41:44.738 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:41:44.738 -07 000000576 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:41:44.748 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 23:41:44.748 -07 000000623 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 23:41:44.748 -07 000000486 INF: Image SNR check: pass [peak (Max-Min)=45.83] 17-03-17 23:41:44.748 -07 000000486 INF: Autofocus start 17-03-17 23:41:44.748 -07 000000486 INF: MeasureProfile start 17-03-17 23:41:44.768 -07 000000486 INF: MeasureProfile done 17-03-17 23:41:44.768 -07 000000486 INF: X=-128 Z correction [um]=-0.6264838 17-03-17 23:41:44.768 -07 000000486 INF: Autofocus finished 17-03-17 23:41:44.948 -07 000000480 INF: FPGA: Recv FOCMRRIMG 17-03-17 23:41:44.948 -07 000000623 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 23:41:44.948 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.91650390625, Z-position -0.139679503194261. ---------- 17-03-17 23:41:44.948 -07 000000610 INF: Cycle 77 Tile 1 Exposure Settings A 1037 G 500 T 500 C 1037 17-03-17 23:41:44.948 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28887, sync = True, waitForSettling = True) 17-03-17 23:41:44.948 -07 000000610 INF: Z Motor: Moving to -0.132236 mm, started at -0.139680 mm, distance = 7.44 um 17-03-17 23:41:44.958 -07 000000610 INF: FPGA: Xmit ZDACW 28887\n [Z Motor] 17-03-17 23:41:44.958 -07 000000409 INF: FPGA: Recv ZDACW 17-03-17 23:41:44.968 -07 000000610 INF: FPGA: 'ZDACW 28887' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:41:44.968 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:41:44.968 -07 000000623 INF: FPGA: Recv ZDACR 28887 17-03-17 23:41:44.978 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:44.978 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:41:45.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:45.128 -07 000000433 INF: FPGA: Recv ZSGSRD 29876 17-03-17 23:41:45.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:41:45.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:45.138 -07 000000627 INF: FPGA: Recv ZSGSRD 29874 17-03-17 23:41:45.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:45.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:45.148 -07 000000459 INF: FPGA: Recv ZSGSRD 29876 17-03-17 23:41:45.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:45.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:45.158 -07 000000482 INF: FPGA: Recv ZSGSRD 29868 17-03-17 23:41:45.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:45.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:45.168 -07 000000576 INF: FPGA: Recv ZSGSRD 29873 17-03-17 23:41:45.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:45.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:45.178 -07 000000627 INF: FPGA: Recv ZSGSRD 29875 17-03-17 23:41:45.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:45.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:45.188 -07 000000448 INF: FPGA: Recv ZSGSRD 29874 17-03-17 23:41:45.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:45.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:45.198 -07 000000480 INF: FPGA: Recv ZSGSRD 29875 17-03-17 23:41:45.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:45.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:45.208 -07 000000433 INF: FPGA: Recv ZSGSRD 29878 17-03-17 23:41:45.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:45.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:45.218 -07 000000576 INF: FPGA: Recv ZSGSRD 29875 17-03-17 23:41:45.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:45.238 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:41:45.238 -07 000000627 INF: FPGA: Recv ZPIEZORD 26263 17-03-17 23:41:45.248 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 23:41:45.248 -07 000000610 INF: Z Motor: Piezo is near 36.1 V (nominally 0 to 100 V), expect near 44.1 V, since DAC is at 4.408 V. Piezo Error = -8.0 V. 17-03-17 23:41:45.248 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.2 um, Read 10 ADC samples: Avg = 29874 (-131.5 uncal um), Error = 0.8 uncal um, Median = 29875 (-131.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29868 (-131.4 uncal um), Max = 29878 (-131.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um) 17-03-17 23:41:45.248 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29874, posNoise = 4, negNoise = 6 17-03-17 23:41:45.248 -07 000000610 INF: Z Motor: After move to -0.132236, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:41:45.248 -07 000000610 INF: Z Motor: MoveAbsStepped took 291 ms) 17-03-17 23:41:45.248 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:41:45.248 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:41:45.248 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:41:45.248 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 23:41:45.248 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 23:41:45.248 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:41:45.248 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms. 17-03-17 23:41:45.248 -07 000000541 INF: Camera: sBCa_SetPowerMode(785074704, 1) start. 17-03-17 23:41:45.248 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 23:41:45.248 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:41:45.248 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:41:45.248 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 23:41:45.248 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms. 17-03-17 23:41:45.248 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 23:41:45.268 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms. 17-03-17 23:41:45.268 -07 000000576 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms. 17-03-17 23:41:45.268 -07 000000541 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms. 17-03-17 23:41:45.268 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 23:41:45.278 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms. 17-03-17 23:41:45.278 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 23:41:45.278 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms. 17-03-17 23:41:45.278 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 35 ms. 17-03-17 23:41:45.288 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 29064 150\n [Camera] 17-03-17 23:41:45.488 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 23:41:46.518 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229 17-03-17 23:41:46.518 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229 17-03-17 23:41:46.528 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:41:46.528 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:41:46.528 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 644204472, 0x0, 391868352) start. 17-03-17 23:41:46.528 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229 17-03-17 23:41:46.528 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229 17-03-17 23:41:46.528 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:41:46.528 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:41:46.528 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) start. 17-03-17 23:41:46.688 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 4.003063, 17-03-17 23:41:46.718 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29064 1423 17-03-17 23:41:46.868 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572 17-03-17 23:41:46.918 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 644204472, 0x0, 391868352) end. Duration was 397 ms. 17-03-17 23:41:46.918 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms. 17-03-17 23:41:46.918 -07 000000433 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:41:46.918 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) end. Duration was 396 ms. 17-03-17 23:41:46.918 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms. 17-03-17 23:41:46.918 -07 000000448 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:41:46.928 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:41:46.928 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms. 17-03-17 23:41:46.928 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:41:46.938 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms. 17-03-17 23:41:47.088 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:41:47.088 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:41:47.368 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072 17-03-17 23:41:47.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072 17-03-17 23:41:47.368 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:41:47.368 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:41:47.368 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) start. 17-03-17 23:41:47.368 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072 17-03-17 23:41:47.368 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072 17-03-17 23:41:47.368 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:41:47.488 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:41:47.488 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) start. 17-03-17 23:41:47.558 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 2265 17-03-17 23:41:47.558 -07 000000486 INF: FPGA: Recv CAMDBLSNAP 17-03-17 23:41:47.558 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 29064 150' command took 2 ms to send, 2263 ms to get response, and 2272 ms overall 17-03-17 23:41:47.558 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-17 23:41:47.558 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.91650390625, Z-Position -0.132240265534102. ------ 17-03-17 23:41:47.568 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:41:47.568 -07 000000475 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13905 mm 17-03-17 23:41:47.568 -07 000000475 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 23:41:47.568 -07 000000433 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:41:47.568 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True) 17-03-17 23:41:47.568 -07 000000438 INF: Y Motor: Moving to 60.7426 mm, started at 59.9165 mm, delta = 0.8261 mm 17-03-17 23:41:47.568 -07 000000541 INF: Z Motor: Entering MoveAbsStepped (DAC = 30375, sync = True, waitForSettling = False) 17-03-17 23:41:47.568 -07 000000541 INF: Z Motor: Moving to -0.139048 mm, started at -0.132240 mm, distance = -6.81 um 17-03-17 23:41:47.578 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:47.578 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:41:47.578 -07 000000480 INF: FPGA: Recv YRDPOS 122709 17-03-17 23:41:47.588 -07 000000541 INF: FPGA: Xmit ZDACW 30375\n [Z Motor] 17-03-17 23:41:47.588 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall 17-03-17 23:41:47.588 -07 000000438 INF: Y Motor: Encoder = 122709 = motor step 95866.4 = 59.9165 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:41:47.588 -07 000000438 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 23:41:47.588 -07 000000438 INF: Y Motor: Moving 1322 steps-1 17-03-17 23:41:47.588 -07 000000482 INF: FPGA: Recv ZDACW 17-03-17 23:41:47.598 -07 000000541 INF: FPGA: 'ZDACW 30375' command took 0 ms to send, 0 ms to get response, and 25 ms overall 17-03-17 23:41:47.598 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 23:41:47.608 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 23:41:47.618 -07 000000541 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:41:47.618 -07 000000502 INF: FPGA: Recv ZDACR 30375 17-03-17 23:41:47.628 -07 000000541 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 29 ms overall 17-03-17 23:41:47.628 -07 000000541 INF: Z Motor: MoveAbsStepped took 56 ms (did NOT wait for settling yet)) 17-03-17 23:41:47.758 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) end. Duration was 395 ms. 17-03-17 23:41:47.758 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms. 17-03-17 23:41:47.758 -07 000000561 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:41:47.768 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms. 17-03-17 23:41:47.768 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms. 17-03-17 23:41:47.798 -07 000000618 INF: FPGA: Recv FOCMRRFOC 17-03-17 23:41:47.798 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall 17-03-17 23:41:47.878 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) end. Duration was 393 ms. 17-03-17 23:41:47.878 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms. 17-03-17 23:41:47.878 -07 000000409 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:41:47.888 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms. 17-03-17 23:41:47.888 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 522 ms. 17-03-17 23:41:47.978 -07 000000541 INF: FPGA: Recv YMVTILE 17-03-17 23:41:47.978 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall 17-03-17 23:41:48.018 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:41:48.018 -07 000000409 INF: FPGA: Recv YRDPOS 124393 17-03-17 23:41:48.028 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:41:48.028 -07 000000438 INF: Y Motor: Encoder = 124393 = motor step 97182.0 = 60.7388 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:41:48.028 -07 000000438 INF: Y Motor: Position error before settling (table move) = -8 encoder counts (-0.004 mm) 17-03-17 23:41:48.028 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.826 mm, average velocity = 2.081 mm/sec 17-03-17 23:41:48.978 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:41:48.978 -07 000000627 INF: FPGA: Recv YRDPOS 124393 17-03-17 23:41:48.988 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:41:48.988 -07 000000438 INF: Y Motor: Encoder = 124393 = motor step 97182.0 = 60.7388 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:41:48.988 -07 000000438 INF: Y Motor: After move to 60.742607, error = -0.003838, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 23:41:48.988 -07 000000438 INF: Y Motor: Position error after settling (table move) = -8 encoder counts (-0.004 mm), Delta during settling = 0 counts (0.000 mm) 17-03-17 23:41:48.988 -07 000000438 INF: Y Motor: Moved to 60.7388 after 1425 ms (table move) 17-03-17 23:41:48.998 -07 000000475 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139048 mm (DAC = 30375) 17-03-17 23:41:48.998 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:48.998 -07 000000438 INF: FPGA: Recv ZSGSRD 30934 17-03-17 23:41:49.008 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:41:49.008 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:49.008 -07 000000627 INF: FPGA: Recv ZSGSRD 30935 17-03-17 23:41:49.018 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:49.018 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:49.018 -07 000000480 INF: FPGA: Recv ZSGSRD 30940 17-03-17 23:41:49.028 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:49.028 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:49.028 -07 000000486 INF: FPGA: Recv ZSGSRD 30934 17-03-17 23:41:49.038 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:49.038 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:49.038 -07 000000618 INF: FPGA: Recv ZSGSRD 30934 17-03-17 23:41:49.048 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:49.048 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:49.048 -07 000000541 INF: FPGA: Recv ZSGSRD 30937 17-03-17 23:41:49.058 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:49.058 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:49.058 -07 000000561 INF: FPGA: Recv ZSGSRD 30930 17-03-17 23:41:49.068 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:49.068 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:49.068 -07 000000448 INF: FPGA: Recv ZSGSRD 30933 17-03-17 23:41:49.078 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:49.078 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:49.078 -07 000000576 INF: FPGA: Recv ZSGSRD 30931 17-03-17 23:41:49.088 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:49.088 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:49.088 -07 000000627 INF: FPGA: Recv ZSGSRD 30940 17-03-17 23:41:49.098 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:49.098 -07 000000475 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:41:49.098 -07 000000541 INF: FPGA: Recv ZPIEZORD 27625 17-03-17 23:41:49.108 -07 000000475 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:49.108 -07 000000475 INF: Z Motor: Piezo is near 39.0 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.635 V. Piezo Error = -7.3 V. 17-03-17 23:41:49.108 -07 000000475 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.0 um, Read 10 ADC samples: Avg = 30935 (-138.3 uncal um), Error = 0.8 uncal um, Median = 30934 (-138.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 30930 (-138.2 uncal um), Max = 30940 (-138.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-17 23:41:49.108 -07 000000475 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30935, posNoise = 5, negNoise = 5 17-03-17 23:41:49.108 -07 000000475 INF: Z Motor: After move to -0.139048, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:41:49.108 -07 000000475 INF: Z Motor: Settle wait time = 1428 ms, measure time = 108 ms (allowed 150 ms), total time = 1536 ms 17-03-17 23:41:49.108 -07 000000475 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms 17-03-17 23:41:49.158 -07 000000475 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1589 ms 17-03-17 23:41:49.158 -07 000000475 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 23:41:49.158 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:41:49.158 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:41:49.168 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:41:49.168 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:41:49.168 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 23:41:49.168 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:41:49.168 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-17 23:41:49.168 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 23:41:49.168 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-17 23:41:49.168 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 23:41:49.178 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms. 17-03-17 23:41:49.178 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms. 17-03-17 23:41:49.188 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:41:49.228 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 23:41:49.528 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-17 23:41:49.528 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-17 23:41:49.528 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 23:41:49.528 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 611574712, 0x0, 559484976) start. 17-03-17 23:41:49.568 -07 000000480 INF: FPGA: Recv @CAMSNAP 380 17-03-17 23:41:49.568 -07 000000486 INF: FPGA: Recv CAMSNAP 17-03-17 23:41:49.568 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall 17-03-17 23:41:49.658 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 611574712, 0x0, 559484976) end. Duration was 127 ms. 17-03-17 23:41:49.658 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:41:49.658 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms. 17-03-17 23:41:49.658 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms. 17-03-17 23:41:49.668 -07 000000618 INF: Autofocus start 17-03-17 23:41:49.668 -07 000000618 INF: MeasureProfile start 17-03-17 23:41:49.668 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:41:49.668 -07 000000482 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:41:49.678 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-17 23:41:49.678 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 23:41:49.678 -07 000000618 INF: MeasureProfile done 17-03-17 23:41:49.678 -07 000000618 INF: X=-99 Z correction [um]=-0.4853171 17-03-17 23:41:49.678 -07 000000618 INF: Autofocus finished 17-03-17 23:41:49.878 -07 000000486 INF: FPGA: Recv FOCMRRIMG 17-03-17 23:41:49.878 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 23:41:49.878 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73876953125, Z-position -0.13905635461651. ---------- 17-03-17 23:41:49.878 -07 000000610 INF: Cycle 77 Tile 2 Exposure Settings A 1037 G 500 T 500 C 1037 17-03-17 23:41:49.888 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28781, sync = True, waitForSettling = True) 17-03-17 23:41:49.888 -07 000000610 INF: Z Motor: Moving to -0.131751 mm, started at -0.139056 mm, distance = 7.31 um 17-03-17 23:41:49.888 -07 000000610 INF: FPGA: Xmit ZDACW 28781\n [Z Motor] 17-03-17 23:41:49.888 -07 000000409 INF: FPGA: Recv ZDACW 17-03-17 23:41:49.898 -07 000000610 INF: FPGA: 'ZDACW 28781' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:41:49.898 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:41:49.898 -07 000000627 INF: FPGA: Recv ZDACR 28781 17-03-17 23:41:49.908 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:49.908 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:41:50.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:50.058 -07 000000486 INF: FPGA: Recv ZSGSRD 29797 17-03-17 23:41:50.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:41:50.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:50.068 -07 000000618 INF: FPGA: Recv ZSGSRD 29798 17-03-17 23:41:50.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:50.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:50.078 -07 000000459 INF: FPGA: Recv ZSGSRD 29802 17-03-17 23:41:50.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:50.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:50.088 -07 000000433 INF: FPGA: Recv ZSGSRD 29794 17-03-17 23:41:50.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:50.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:50.098 -07 000000475 INF: FPGA: Recv ZSGSRD 29804 17-03-17 23:41:50.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:50.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:50.108 -07 000000459 INF: FPGA: Recv ZSGSRD 29805 17-03-17 23:41:50.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:50.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:50.118 -07 000000502 INF: FPGA: Recv ZSGSRD 29798 17-03-17 23:41:50.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:50.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:50.128 -07 000000438 INF: FPGA: Recv ZSGSRD 29803 17-03-17 23:41:50.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:50.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:50.138 -07 000000409 INF: FPGA: Recv ZSGSRD 29791 17-03-17 23:41:50.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:50.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:50.148 -07 000000482 INF: FPGA: Recv ZSGSRD 29807 17-03-17 23:41:50.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:50.158 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:41:50.158 -07 000000459 INF: FPGA: Recv ZPIEZORD 26171 17-03-17 23:41:50.168 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:50.168 -07 000000610 INF: Z Motor: Piezo is near 35.9 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.392 V. Piezo Error = -8.0 V. 17-03-17 23:41:50.168 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.8 um, Read 10 ADC samples: Avg = 29800 (-131.0 uncal um), Error = 0.8 uncal um, Median = 29800 (-131.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29791 (-130.9 uncal um), Max = 29807 (-131.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um) 17-03-17 23:41:50.168 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29800, posNoise = 7, negNoise = 9 17-03-17 23:41:50.168 -07 000000610 INF: Z Motor: After move to -0.131751, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:41:50.168 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms) 17-03-17 23:41:50.168 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:41:50.168 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:41:50.168 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:41:50.168 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:41:50.168 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 23:41:50.168 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 23:41:50.168 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 23:41:50.168 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:41:50.168 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-17 23:41:50.168 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 23:41:50.168 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:41:50.168 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 23:41:50.178 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-17 23:41:50.178 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-17 23:41:50.178 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 23:41:50.178 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 23:41:50.188 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms. 17-03-17 23:41:50.188 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms. 17-03-17 23:41:50.188 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms. 17-03-17 23:41:50.188 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms. 17-03-17 23:41:50.198 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 28958 150\n [Camera] 17-03-17 23:41:50.398 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 23:41:51.428 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229 17-03-17 23:41:51.428 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229 17-03-17 23:41:51.428 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:41:51.428 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:41:51.428 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start. 17-03-17 23:41:51.438 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229 17-03-17 23:41:51.438 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229 17-03-17 23:41:51.438 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:41:51.438 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:41:51.438 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start. 17-03-17 23:41:51.628 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28958 1422 17-03-17 23:41:51.778 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572 17-03-17 23:41:51.828 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 398 ms. 17-03-17 23:41:51.828 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms. 17-03-17 23:41:51.828 -07 000000576 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:41:51.838 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:41:51.838 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms. 17-03-17 23:41:51.838 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 400 ms. 17-03-17 23:41:51.838 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms. 17-03-17 23:41:51.838 -07 000000480 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:41:51.838 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:41:51.848 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms. 17-03-17 23:41:52.048 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 3.993549, 17-03-17 23:41:52.088 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:41:52.088 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:41:52.278 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072 17-03-17 23:41:52.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072 17-03-17 23:41:52.278 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:41:52.278 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:41:52.278 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start. 17-03-17 23:41:52.278 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072 17-03-17 23:41:52.278 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072 17-03-17 23:41:52.278 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:41:52.278 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:41:52.278 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start. 17-03-17 23:41:52.468 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP 2265 17-03-17 23:41:52.468 -07 000000438 INF: FPGA: Recv CAMDBLSNAP 17-03-17 23:41:52.468 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 28958 150' command took 2 ms to send, 2262 ms to get response, and 2272 ms overall 17-03-17 23:41:52.468 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-17 23:41:52.468 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73876953125, Z-Position -0.131764873835612. ------ 17-03-17 23:41:52.468 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:41:52.468 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13856 mm 17-03-17 23:41:52.468 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 23:41:52.478 -07 000000459 INF: Z Motor: Entering MoveAbsStepped (DAC = 30269, sync = True, waitForSettling = False) 17-03-17 23:41:52.478 -07 000000459 INF: Z Motor: Moving to -0.138563 mm, started at -0.131765 mm, distance = -6.80 um 17-03-17 23:41:52.478 -07 000000433 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:41:52.478 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall 17-03-17 23:41:52.478 -07 000000459 INF: FPGA: Xmit ZDACW 30269\n [Z Motor] 17-03-17 23:41:52.478 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True) 17-03-17 23:41:52.478 -07 000000623 INF: Y Motor: Moving to 61.5726 mm, started at 60.7388 mm, delta = 0.8338 mm 17-03-17 23:41:52.478 -07 000000475 INF: FPGA: Recv ZDACW 17-03-17 23:41:52.488 -07 000000459 INF: FPGA: 'ZDACW 30269' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:41:52.488 -07 000000486 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 23:41:52.498 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:41:52.498 -07 000000576 INF: FPGA: Recv YRDPOS 124394 17-03-17 23:41:52.508 -07 000000459 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:41:52.508 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall 17-03-17 23:41:52.508 -07 000000623 INF: Y Motor: Encoder = 124394 = motor step 97182.8 = 60.7393 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:41:52.508 -07 000000409 INF: FPGA: Recv ZDACR 30269 17-03-17 23:41:52.508 -07 000000623 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 23:41:52.508 -07 000000623 INF: Y Motor: Moving 1333 steps-8 17-03-17 23:41:52.518 -07 000000459 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-17 23:41:52.518 -07 000000459 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet)) 17-03-17 23:41:52.518 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 23:41:52.678 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 403 ms. 17-03-17 23:41:52.678 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms. 17-03-17 23:41:52.678 -07 000000480 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:41:52.678 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 401 ms. 17-03-17 23:41:52.678 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms. 17-03-17 23:41:52.678 -07 000000448 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:41:52.678 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:41:52.688 -07 000000627 INF: FPGA: Recv FOCMRRFOC 17-03-17 23:41:52.688 -07 000000486 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 209 ms overall 17-03-17 23:41:52.688 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms. 17-03-17 23:41:52.688 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms. 17-03-17 23:41:52.688 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms. 17-03-17 23:41:52.888 -07 000000409 INF: FPGA: Recv YMVTILE 17-03-17 23:41:52.888 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 381 ms overall 17-03-17 23:41:52.928 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:41:52.928 -07 000000438 INF: FPGA: Recv YRDPOS 126095 17-03-17 23:41:52.938 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:41:52.938 -07 000000623 INF: Y Motor: Encoder = 126095 = motor step 98511.7 = 61.5698 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:41:52.938 -07 000000623 INF: Y Motor: Position error before settling (table move) = -6 encoder counts (-0.003 mm) 17-03-17 23:41:52.938 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 382 ms, distance = 0.834 mm, average velocity = 2.183 mm/sec 17-03-17 23:41:53.888 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:41:53.888 -07 000000475 INF: FPGA: Recv YRDPOS 126095 17-03-17 23:41:53.898 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:41:53.898 -07 000000623 INF: Y Motor: Encoder = 126095 = motor step 98511.7 = 61.5698 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:41:53.898 -07 000000623 INF: Y Motor: After move to 61.572609, error = -0.002785, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 23:41:53.898 -07 000000623 INF: Y Motor: Position error after settling (table move) = -6 encoder counts (-0.003 mm), Delta during settling = 0 counts (0.000 mm) 17-03-17 23:41:53.898 -07 000000623 INF: Y Motor: Moved to 61.5698 after 1423 ms (table move) 17-03-17 23:41:53.898 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138563 mm (DAC = 30269) 17-03-17 23:41:53.898 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:53.908 -07 000000618 INF: FPGA: Recv ZSGSRD 30868 17-03-17 23:41:53.908 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall 17-03-17 23:41:53.908 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:53.908 -07 000000459 INF: FPGA: Recv ZSGSRD 30853 17-03-17 23:41:53.918 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:41:53.918 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:53.918 -07 000000547 INF: FPGA: Recv ZSGSRD 30863 17-03-17 23:41:53.928 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:53.928 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:53.928 -07 000000433 INF: FPGA: Recv ZSGSRD 30863 17-03-17 23:41:53.938 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:53.938 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:53.938 -07 000000627 INF: FPGA: Recv ZSGSRD 30860 17-03-17 23:41:53.948 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:53.948 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:53.948 -07 000000576 INF: FPGA: Recv ZSGSRD 30861 17-03-17 23:41:53.958 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:53.958 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:53.958 -07 000000438 INF: FPGA: Recv ZSGSRD 30852 17-03-17 23:41:53.968 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:53.968 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:53.968 -07 000000618 INF: FPGA: Recv ZSGSRD 30854 17-03-17 23:41:53.978 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:53.978 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:53.978 -07 000000627 INF: FPGA: Recv ZSGSRD 30868 17-03-17 23:41:53.988 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:53.988 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:53.988 -07 000000547 INF: FPGA: Recv ZSGSRD 30863 17-03-17 23:41:53.998 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:53.998 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:41:53.998 -07 000000438 INF: FPGA: Recv ZPIEZORD 27552 17-03-17 23:41:54.008 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:54.008 -07 000000502 INF: Z Motor: Piezo is near 38.9 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.619 V. Piezo Error = -7.3 V. 17-03-17 23:41:54.008 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.6 um, Read 10 ADC samples: Avg = 30860 (-137.8 uncal um), Error = 0.8 uncal um, Median = 30862 (-137.8 uncal um), StdDev = 6 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30852 (-137.7 uncal um), Max = 30868 (-137.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um) 17-03-17 23:41:54.008 -07 000000502 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30860, posNoise = 8, negNoise = 8 17-03-17 23:41:54.008 -07 000000502 INF: Z Motor: After move to -0.138563, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:41:54.008 -07 000000502 INF: Z Motor: Settle wait time = 1427 ms, measure time = 102 ms (allowed 150 ms), total time = 1529 ms 17-03-17 23:41:54.008 -07 000000502 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms 17-03-17 23:41:54.058 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1580 ms 17-03-17 23:41:54.058 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 23:41:54.058 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:41:54.058 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:41:54.058 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:41:54.058 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:41:54.058 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 23:41:54.058 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:41:54.058 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-17 23:41:54.058 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 23:41:54.068 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 5 ms. 17-03-17 23:41:54.068 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 23:41:54.068 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms. 17-03-17 23:41:54.078 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms. 17-03-17 23:41:54.078 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:41:54.118 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 23:41:54.418 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-17 23:41:54.418 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-17 23:41:54.418 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 23:41:54.418 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1493765392, 0x0, 559484976) start. 17-03-17 23:41:54.468 -07 000000547 INF: FPGA: Recv @CAMSNAP 383 17-03-17 23:41:54.468 -07 000000623 INF: FPGA: Recv CAMSNAP 17-03-17 23:41:54.468 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 388 ms overall 17-03-17 23:41:54.548 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1493765392, 0x0, 559484976) end. Duration was 126 ms. 17-03-17 23:41:54.548 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:41:54.548 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms. 17-03-17 23:41:54.548 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms. 17-03-17 23:41:54.568 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:41:54.568 -07 000000482 INF: Autofocus start 17-03-17 23:41:54.568 -07 000000482 INF: MeasureProfile start 17-03-17 23:41:54.568 -07 000000547 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:41:54.578 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 23:41:54.578 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 23:41:54.578 -07 000000482 INF: MeasureProfile done 17-03-17 23:41:54.578 -07 000000482 INF: X=-32 Z correction [um]=-0.1591732 17-03-17 23:41:54.578 -07 000000482 INF: Autofocus finished 17-03-17 23:41:54.778 -07 000000547 INF: FPGA: Recv FOCMRRIMG 17-03-17 23:41:54.778 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 23:41:54.778 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56982421875, Z-position -0.138574538705878. ---------- 17-03-17 23:41:54.778 -07 000000610 INF: Cycle 77 Tile 3 Exposure Settings A 1037 G 500 T 500 C 1037 17-03-17 23:41:54.788 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28746, sync = True, waitForSettling = True) 17-03-17 23:41:54.788 -07 000000610 INF: Z Motor: Moving to -0.131591 mm, started at -0.138575 mm, distance = 6.98 um 17-03-17 23:41:54.788 -07 000000610 INF: FPGA: Xmit ZDACW 28746\n [Z Motor] 17-03-17 23:41:54.788 -07 000000438 INF: FPGA: Recv ZDACW 17-03-17 23:41:54.798 -07 000000610 INF: FPGA: 'ZDACW 28746' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:54.798 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:41:54.798 -07 000000623 INF: FPGA: Recv ZDACR 28746 17-03-17 23:41:54.808 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:54.808 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:41:54.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:54.958 -07 000000409 INF: FPGA: Recv ZSGSRD 29782 17-03-17 23:41:54.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:54.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:54.968 -07 000000433 INF: FPGA: Recv ZSGSRD 29770 17-03-17 23:41:54.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:54.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:54.978 -07 000000475 INF: FPGA: Recv ZSGSRD 29771 17-03-17 23:41:54.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:54.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:54.988 -07 000000438 INF: FPGA: Recv ZSGSRD 29771 17-03-17 23:41:54.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:54.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:54.998 -07 000000512 INF: FPGA: Recv ZSGSRD 29779 17-03-17 23:41:55.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:41:55.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:55.008 -07 000000576 INF: FPGA: Recv ZSGSRD 29777 17-03-17 23:41:55.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:55.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:55.018 -07 000000486 INF: FPGA: Recv ZSGSRD 29768 17-03-17 23:41:55.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:55.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:55.028 -07 000000438 INF: FPGA: Recv ZSGSRD 29776 17-03-17 23:41:55.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:55.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:55.038 -07 000000627 INF: FPGA: Recv ZSGSRD 29768 17-03-17 23:41:55.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:55.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:55.048 -07 000000459 INF: FPGA: Recv ZSGSRD 29772 17-03-17 23:41:55.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:55.058 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:41:55.058 -07 000000561 INF: FPGA: Recv ZPIEZORD 26101 17-03-17 23:41:55.068 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:55.068 -07 000000610 INF: Z Motor: Piezo is near 35.8 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.386 V. Piezo Error = -8.1 V. 17-03-17 23:41:55.068 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.6 um, Read 10 ADC samples: Avg = 29773 (-130.8 uncal um), Error = 0.8 uncal um, Median = 29772 (-130.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29768 (-130.8 uncal um), Max = 29782 (-130.9 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-17 23:41:55.068 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29773, posNoise = 9, negNoise = 5 17-03-17 23:41:55.068 -07 000000610 INF: Z Motor: After move to -0.131591, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:41:55.068 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms) 17-03-17 23:41:55.068 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:41:55.068 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:41:55.068 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:41:55.068 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 23:41:55.068 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:41:55.068 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:41:55.068 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 23:41:55.068 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 23:41:55.068 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:41:55.068 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 23:41:55.068 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms. 17-03-17 23:41:55.068 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 23:41:55.068 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-17 23:41:55.078 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 23:41:55.078 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-17 23:41:55.078 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 23:41:55.088 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms. 17-03-17 23:41:55.088 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms. 17-03-17 23:41:55.088 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 17 ms. 17-03-17 23:41:55.088 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms. 17-03-17 23:41:55.098 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 28923 150\n [Camera] 17-03-17 23:41:55.298 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 23:41:56.328 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229 17-03-17 23:41:56.328 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229 17-03-17 23:41:56.338 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:41:56.338 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:41:56.338 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start. 17-03-17 23:41:56.338 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229 17-03-17 23:41:56.338 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229 17-03-17 23:41:56.338 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:41:56.338 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:41:56.338 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start. 17-03-17 23:41:56.528 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28923 1422 17-03-17 23:41:56.678 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572 17-03-17 23:41:56.738 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 400 ms. 17-03-17 23:41:56.738 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms. 17-03-17 23:41:56.738 -07 000000448 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:41:56.738 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 398 ms. 17-03-17 23:41:56.738 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms. 17-03-17 23:41:56.738 -07 000000433 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:41:56.738 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:41:56.738 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms. 17-03-17 23:41:56.738 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:41:56.748 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms. 17-03-17 23:41:57.088 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:41:57.088 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:41:57.178 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072 17-03-17 23:41:57.178 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072 17-03-17 23:41:57.178 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:41:57.178 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:41:57.178 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start. 17-03-17 23:41:57.178 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072 17-03-17 23:41:57.178 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072 17-03-17 23:41:57.178 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:41:57.178 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:41:57.178 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start. 17-03-17 23:41:57.368 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 2265 17-03-17 23:41:57.368 -07 000000486 INF: FPGA: Recv CAMDBLSNAP 17-03-17 23:41:57.368 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 28923 150' command took 2 ms to send, 2263 ms to get response, and 2272 ms overall 17-03-17 23:41:57.368 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-17 23:41:57.368 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56982421875, Z-Position -0.131591420107784. ------ 17-03-17 23:41:57.368 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:41:57.368 -07 000000627 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13840 mm 17-03-17 23:41:57.368 -07 000000627 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 23:41:57.378 -07 000000438 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:41:57.378 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall 17-03-17 23:41:57.378 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 23:41:57.378 -07 000000482 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True) 17-03-17 23:41:57.378 -07 000000482 INF: Y Motor: Moving to 62.4026 mm, started at 61.5698 mm, delta = 0.8328 mm 17-03-17 23:41:57.378 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 30234, sync = True, waitForSettling = False) 17-03-17 23:41:57.378 -07 000000502 INF: Z Motor: Moving to -0.138402 mm, started at -0.131591 mm, distance = -6.81 um 17-03-17 23:41:57.388 -07 000000502 INF: FPGA: Xmit ZDACW 30234\n [Z Motor] 17-03-17 23:41:57.388 -07 000000475 INF: FPGA: Recv ZDACW 17-03-17 23:41:57.398 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:41:57.398 -07 000000502 INF: FPGA: 'ZDACW 30234' command took 0 ms to send, 0 ms to get response, and 16 ms overall 17-03-17 23:41:57.398 -07 000000438 INF: FPGA: Recv YRDPOS 126096 17-03-17 23:41:57.408 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall 17-03-17 23:41:57.408 -07 000000482 INF: Y Motor: Encoder = 126096 = motor step 98512.5 = 61.5703 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:41:57.408 -07 000000482 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 23:41:57.408 -07 000000482 INF: Y Motor: Moving 1332 steps-6 17-03-17 23:41:57.418 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:41:57.418 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 3.974486, 17-03-17 23:41:57.418 -07 000000459 INF: FPGA: Recv ZDACR 30234 17-03-17 23:41:57.428 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-17 23:41:57.428 -07 000000502 INF: Z Motor: MoveAbsStepped took 46 ms (did NOT wait for settling yet)) 17-03-17 23:41:57.438 -07 000000482 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 23:41:57.578 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 398 ms. 17-03-17 23:41:57.578 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms. 17-03-17 23:41:57.578 -07 000000547 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:41:57.578 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 398 ms. 17-03-17 23:41:57.578 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms. 17-03-17 23:41:57.578 -07 000000561 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:41:57.578 -07 000000512 INF: FPGA: Recv FOCMRRFOC 17-03-17 23:41:57.578 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 203 ms overall 17-03-17 23:41:57.578 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:41:57.588 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms. 17-03-17 23:41:57.588 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms. 17-03-17 23:41:57.588 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms. 17-03-17 23:41:57.808 -07 000000475 INF: FPGA: Recv YMVTILE 17-03-17 23:41:57.808 -07 000000482 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 402 ms overall 17-03-17 23:41:57.848 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:41:57.848 -07 000000480 INF: FPGA: Recv YRDPOS 127797 17-03-17 23:41:57.858 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-17 23:41:57.858 -07 000000482 INF: Y Motor: Encoder = 127797 = motor step 99841.4 = 62.4009 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:41:57.858 -07 000000482 INF: Y Motor: Position error before settling (table move) = -4 encoder counts (-0.002 mm) 17-03-17 23:41:57.858 -07 000000482 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 404 ms, distance = 0.833 mm, average velocity = 2.061 mm/sec 17-03-17 23:41:58.808 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:41:58.808 -07 000000512 INF: FPGA: Recv YRDPOS 127797 17-03-17 23:41:58.818 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:41:58.818 -07 000000482 INF: Y Motor: Encoder = 127797 = motor step 99841.4 = 62.4009 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:41:58.818 -07 000000482 INF: Y Motor: After move to 62.402607, error = -0.001728, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 23:41:58.818 -07 000000482 INF: Y Motor: Position error after settling (table move) = -4 encoder counts (-0.002 mm), Delta during settling = 0 counts (0.000 mm) 17-03-17 23:41:58.818 -07 000000482 INF: Y Motor: Moved to 62.4009 after 1442 ms (table move) 17-03-17 23:41:58.818 -07 000000627 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138402 mm (DAC = 30234) 17-03-17 23:41:58.818 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:58.828 -07 000000541 INF: FPGA: Recv ZSGSRD 30842 17-03-17 23:41:58.828 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall 17-03-17 23:41:58.828 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:58.828 -07 000000480 INF: FPGA: Recv ZSGSRD 30832 17-03-17 23:41:58.838 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:41:58.838 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:58.838 -07 000000480 INF: FPGA: Recv ZSGSRD 30838 17-03-17 23:41:58.848 -07 000000627 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:58.848 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:58.848 -07 000000433 INF: FPGA: Recv ZSGSRD 30836 17-03-17 23:41:58.858 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:58.858 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:58.858 -07 000000448 INF: FPGA: Recv ZSGSRD 30832 17-03-17 23:41:58.868 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:58.868 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:58.868 -07 000000438 INF: FPGA: Recv ZSGSRD 30836 17-03-17 23:41:58.878 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:58.878 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:58.878 -07 000000512 INF: FPGA: Recv ZSGSRD 30831 17-03-17 23:41:58.888 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:58.888 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:58.888 -07 000000623 INF: FPGA: Recv ZSGSRD 30831 17-03-17 23:41:58.898 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:58.898 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:58.898 -07 000000576 INF: FPGA: Recv ZSGSRD 30833 17-03-17 23:41:58.908 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:58.908 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:58.908 -07 000000502 INF: FPGA: Recv ZSGSRD 30837 17-03-17 23:41:58.918 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:58.918 -07 000000627 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:41:58.918 -07 000000618 INF: FPGA: Recv ZPIEZORD 27515 17-03-17 23:41:58.928 -07 000000627 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:58.928 -07 000000627 INF: Z Motor: Piezo is near 38.8 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.613 V. Piezo Error = -7.4 V. 17-03-17 23:41:58.928 -07 000000627 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.4 um, Read 10 ADC samples: Avg = 30835 (-137.6 uncal um), Error = 0.8 uncal um, Median = 30834 (-137.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30831 (-137.6 uncal um), Max = 30842 (-137.7 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um) 17-03-17 23:41:58.928 -07 000000627 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30835, posNoise = 7, negNoise = 4 17-03-17 23:41:58.928 -07 000000627 INF: Z Motor: After move to -0.138402, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:41:58.928 -07 000000627 INF: Z Motor: Settle wait time = 1445 ms, measure time = 102 ms (allowed 150 ms), total time = 1547 ms 17-03-17 23:41:58.928 -07 000000627 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms 17-03-17 23:41:58.978 -07 000000627 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1601 ms 17-03-17 23:41:58.978 -07 000000627 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 23:41:58.978 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:41:58.978 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:41:58.978 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:41:58.978 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 23:41:58.978 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:41:58.978 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:41:58.978 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms. 17-03-17 23:41:58.978 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 23:41:58.988 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-17 23:41:58.988 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 23:41:58.998 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms. 17-03-17 23:41:58.998 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms. 17-03-17 23:41:58.998 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:41:59.048 -07 000000482 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 23:41:59.338 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-17 23:41:59.348 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-17 23:41:59.348 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 23:41:59.348 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512846776, 0x0, 559484976) start. 17-03-17 23:41:59.378 -07 000000448 INF: FPGA: Recv @CAMSNAP 380 17-03-17 23:41:59.388 -07 000000618 INF: FPGA: Recv CAMSNAP 17-03-17 23:41:59.388 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall 17-03-17 23:41:59.468 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512846776, 0x0, 559484976) end. Duration was 127 ms. 17-03-17 23:41:59.468 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:41:59.478 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms. 17-03-17 23:41:59.478 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms. 17-03-17 23:41:59.488 -07 000000475 INF: Autofocus start 17-03-17 23:41:59.488 -07 000000475 INF: MeasureProfile start 17-03-17 23:41:59.488 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:41:59.488 -07 000000486 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:41:59.498 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-17 23:41:59.498 -07 000000623 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 23:41:59.498 -07 000000475 INF: MeasureProfile done 17-03-17 23:41:59.498 -07 000000475 INF: X=-80 Z correction [um]=-0.3928285 17-03-17 23:41:59.498 -07 000000475 INF: Autofocus finished 17-03-17 23:41:59.698 -07 000000409 INF: FPGA: Recv FOCMRRIMG 17-03-17 23:41:59.698 -07 000000623 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 23:41:59.698 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.40087890625, Z-position -0.138413933402334. ---------- 17-03-17 23:41:59.698 -07 000000610 INF: Cycle 77 Tile 4 Exposure Settings A 1037 G 500 T 500 C 1037 17-03-17 23:41:59.708 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28661, sync = True, waitForSettling = True) 17-03-17 23:41:59.708 -07 000000610 INF: Z Motor: Moving to -0.131202 mm, started at -0.138414 mm, distance = 7.21 um 17-03-17 23:41:59.708 -07 000000610 INF: FPGA: Xmit ZDACW 28661\n [Z Motor] 17-03-17 23:41:59.708 -07 000000627 INF: FPGA: Recv ZDACW 17-03-17 23:41:59.718 -07 000000610 INF: FPGA: 'ZDACW 28661' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:41:59.718 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:41:59.718 -07 000000459 INF: FPGA: Recv ZDACR 28661 17-03-17 23:41:59.728 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:59.728 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:41:59.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:59.878 -07 000000623 INF: FPGA: Recv ZSGSRD 29716 17-03-17 23:41:59.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:41:59.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:59.888 -07 000000475 INF: FPGA: Recv ZSGSRD 29716 17-03-17 23:41:59.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:59.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:59.898 -07 000000547 INF: FPGA: Recv ZSGSRD 29706 17-03-17 23:41:59.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:59.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:59.908 -07 000000502 INF: FPGA: Recv ZSGSRD 29717 17-03-17 23:41:59.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:59.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:59.918 -07 000000459 INF: FPGA: Recv ZSGSRD 29714 17-03-17 23:41:59.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:59.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:59.928 -07 000000409 INF: FPGA: Recv ZSGSRD 29712 17-03-17 23:41:59.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:59.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:59.938 -07 000000512 INF: FPGA: Recv ZSGSRD 29712 17-03-17 23:41:59.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:59.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:59.948 -07 000000547 INF: FPGA: Recv ZSGSRD 29711 17-03-17 23:41:59.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:59.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:59.958 -07 000000576 INF: FPGA: Recv ZSGSRD 29713 17-03-17 23:41:59.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:59.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:41:59.968 -07 000000541 INF: FPGA: Recv ZSGSRD 29710 17-03-17 23:41:59.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:59.978 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:41:59.978 -07 000000627 INF: FPGA: Recv ZPIEZORD 26031 17-03-17 23:41:59.988 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:41:59.988 -07 000000610 INF: Z Motor: Piezo is near 35.6 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.373 V. Piezo Error = -8.1 V. 17-03-17 23:41:59.988 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.2 um, Read 10 ADC samples: Avg = 29713 (-130.4 uncal um), Error = 0.8 uncal um, Median = 29712 (-130.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29706 (-130.4 uncal um), Max = 29717 (-130.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um) 17-03-17 23:41:59.988 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29713, posNoise = 4, negNoise = 7 17-03-17 23:41:59.988 -07 000000610 INF: Z Motor: After move to -0.131202, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:41:59.988 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms) 17-03-17 23:41:59.988 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:41:59.988 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:41:59.988 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:41:59.988 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:41:59.988 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 23:41:59.988 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:41:59.988 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 23:41:59.988 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 23:41:59.988 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:41:59.988 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 23:41:59.988 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-17 23:41:59.988 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 23:41:59.998 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms. 17-03-17 23:41:59.998 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 23:41:59.998 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-17 23:41:59.998 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 23:42:00.008 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms. 17-03-17 23:42:00.008 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms. 17-03-17 23:42:00.008 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms. 17-03-17 23:42:00.008 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms. 17-03-17 23:42:00.018 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 28837 150\n [Camera] 17-03-17 23:42:00.218 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 23:42:01.248 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229 17-03-17 23:42:01.248 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229 17-03-17 23:42:01.248 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:42:01.248 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:42:01.248 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) start. 17-03-17 23:42:01.258 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229 17-03-17 23:42:01.258 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229 17-03-17 23:42:01.258 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:42:01.258 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:42:01.258 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) start. 17-03-17 23:42:01.448 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28837 1422 17-03-17 23:42:01.598 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572 17-03-17 23:42:01.648 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 2317127784, 0x0, 391868352) end. Duration was 400 ms. 17-03-17 23:42:01.648 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms. 17-03-17 23:42:01.778 -07 000000547 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:42:01.778 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2352550048, 0x0, 418435064) end. Duration was 519 ms. 17-03-17 23:42:01.778 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 519 ms. 17-03-17 23:42:01.778 -07 000000512 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:42:01.778 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms. 17-03-17 23:42:01.778 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 527 ms. 17-03-17 23:42:01.778 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms. 17-03-17 23:42:01.788 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 532 ms. 17-03-17 23:42:02.088 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:42:02.088 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:42:02.098 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072 17-03-17 23:42:02.098 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072 17-03-17 23:42:02.098 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:42:02.098 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072 17-03-17 23:42:02.098 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072 17-03-17 23:42:02.098 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:42:02.108 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:42:02.108 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start. 17-03-17 23:42:02.108 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:42:02.108 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start. 17-03-17 23:42:02.288 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP 2265 17-03-17 23:42:02.288 -07 000000618 INF: FPGA: Recv CAMDBLSNAP 17-03-17 23:42:02.288 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 28837 150' command took 2 ms to send, 2262 ms to get response, and 2272 ms overall 17-03-17 23:42:02.288 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-17 23:42:02.288 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.40087890625, Z-Position -0.131205967379278. ------ 17-03-17 23:42:02.288 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:42:02.288 -07 000000475 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13801 mm 17-03-17 23:42:02.288 -07 000000475 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 23:42:02.298 -07 000000486 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:42:02.298 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-17 23:42:02.298 -07 000000541 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 23:42:02.298 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 30148, sync = True, waitForSettling = False) 17-03-17 23:42:02.298 -07 000000627 INF: Z Motor: Moving to -0.138009 mm, started at -0.131206 mm, distance = -6.80 um 17-03-17 23:42:02.298 -07 000000409 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True) 17-03-17 23:42:02.298 -07 000000409 INF: Y Motor: Moving to 63.2326 mm, started at 62.4009 mm, delta = 0.8317 mm 17-03-17 23:42:02.308 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:42:02.308 -07 000000512 INF: FPGA: Recv YRDPOS 127798 17-03-17 23:42:02.318 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall 17-03-17 23:42:02.318 -07 000000409 INF: Y Motor: Encoder = 127798 = motor step 99842.2 = 62.4014 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:42:02.318 -07 000000627 INF: FPGA: Xmit ZDACW 30148\n [Z Motor] 17-03-17 23:42:02.318 -07 000000409 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 23:42:02.318 -07 000000409 INF: Y Motor: Moving 1330 steps-4 17-03-17 23:42:02.318 -07 000000482 INF: FPGA: Recv ZDACW 17-03-17 23:42:02.328 -07 000000627 INF: FPGA: 'ZDACW 30148' command took 0 ms to send, 0 ms to get response, and 27 ms overall 17-03-17 23:42:02.328 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:42:02.328 -07 000000459 INF: FPGA: Recv ZDACR 30148 17-03-17 23:42:02.338 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:02.338 -07 000000627 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet)) 17-03-17 23:42:02.338 -07 000000409 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 23:42:02.498 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 386 ms. 17-03-17 23:42:02.498 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms. 17-03-17 23:42:02.498 -07 000000433 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:42:02.498 -07 000000627 INF: FPGA: Recv FOCMRRFOC 17-03-17 23:42:02.498 -07 000000541 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 203 ms overall 17-03-17 23:42:02.498 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:42:02.498 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 393 ms. 17-03-17 23:42:02.498 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms. 17-03-17 23:42:02.498 -07 000000623 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:42:02.508 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:42:02.508 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms. 17-03-17 23:42:02.508 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms. 17-03-17 23:42:02.708 -07 000000459 INF: FPGA: Recv YMVTILE 17-03-17 23:42:02.708 -07 000000409 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall 17-03-17 23:42:02.748 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:42:02.748 -07 000000502 INF: FPGA: Recv YRDPOS 129495 17-03-17 23:42:02.758 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:42:02.758 -07 000000409 INF: Y Motor: Encoder = 129495 = motor step 101168.0 = 63.2300 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:42:02.758 -07 000000409 INF: Y Motor: Position error before settling (table move) = -5 encoder counts (-0.002 mm) 17-03-17 23:42:02.758 -07 000000409 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.832 mm, average velocity = 2.106 mm/sec 17-03-17 23:42:02.808 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 3.993549, 17-03-17 23:42:03.708 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:42:03.708 -07 000000541 INF: FPGA: Recv YRDPOS 129495 17-03-17 23:42:03.718 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:03.718 -07 000000409 INF: Y Motor: Encoder = 129495 = motor step 101168.0 = 63.2300 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:42:03.718 -07 000000409 INF: Y Motor: After move to 63.232609, error = -0.002628, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 23:42:03.718 -07 000000409 INF: Y Motor: Position error after settling (table move) = -5 encoder counts (-0.002 mm), Delta during settling = 0 counts (0.000 mm) 17-03-17 23:42:03.718 -07 000000409 INF: Y Motor: Moved to 63.2300 after 1420 ms (table move) 17-03-17 23:42:03.718 -07 000000475 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138009 mm (DAC = 30148) 17-03-17 23:42:03.718 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:03.728 -07 000000618 INF: FPGA: Recv ZSGSRD 30776 17-03-17 23:42:03.728 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall 17-03-17 23:42:03.728 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:03.728 -07 000000547 INF: FPGA: Recv ZSGSRD 30769 17-03-17 23:42:03.738 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:42:03.738 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:03.738 -07 000000486 INF: FPGA: Recv ZSGSRD 30776 17-03-17 23:42:03.748 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:03.748 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:03.748 -07 000000480 INF: FPGA: Recv ZSGSRD 30775 17-03-17 23:42:03.758 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:03.758 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:03.758 -07 000000502 INF: FPGA: Recv ZSGSRD 30779 17-03-17 23:42:03.768 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:03.768 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:03.768 -07 000000576 INF: FPGA: Recv ZSGSRD 30772 17-03-17 23:42:03.778 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:03.778 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:03.778 -07 000000512 INF: FPGA: Recv ZSGSRD 30768 17-03-17 23:42:03.788 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:03.788 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:03.788 -07 000000459 INF: FPGA: Recv ZSGSRD 30770 17-03-17 23:42:03.798 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:03.798 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:03.798 -07 000000547 INF: FPGA: Recv ZSGSRD 30775 17-03-17 23:42:03.808 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:03.808 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:03.808 -07 000000438 INF: FPGA: Recv ZSGSRD 30780 17-03-17 23:42:03.818 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:03.818 -07 000000475 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:42:03.818 -07 000000433 INF: FPGA: Recv ZPIEZORD 27411 17-03-17 23:42:03.828 -07 000000475 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:03.828 -07 000000475 INF: Z Motor: Piezo is near 38.6 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.600 V. Piezo Error = -7.4 V. 17-03-17 23:42:03.828 -07 000000475 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.0 um, Read 10 ADC samples: Avg = 30774 (-137.2 uncal um), Error = 0.8 uncal um, Median = 30775 (-137.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30768 (-137.2 uncal um), Max = 30780 (-137.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um) 17-03-17 23:42:03.828 -07 000000475 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30774, posNoise = 6, negNoise = 6 17-03-17 23:42:03.828 -07 000000475 INF: Z Motor: After move to -0.138009, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:42:03.828 -07 000000475 INF: Z Motor: Settle wait time = 1426 ms, measure time = 101 ms (allowed 150 ms), total time = 1527 ms 17-03-17 23:42:03.828 -07 000000475 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms 17-03-17 23:42:03.878 -07 000000475 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1582 ms 17-03-17 23:42:03.878 -07 000000475 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 23:42:03.878 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:42:03.878 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:42:03.878 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:42:03.878 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:42:03.878 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 23:42:03.878 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:42:03.878 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:42:03.878 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 23:42:03.888 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-17 23:42:03.888 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 23:42:03.888 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms. 17-03-17 23:42:03.888 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms. 17-03-17 23:42:03.898 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:42:03.938 -07 000000448 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 23:42:04.238 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-17 23:42:04.238 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-17 23:42:04.238 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 23:42:04.248 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1165594328, 0x0, 559484976) start. 17-03-17 23:42:04.278 -07 000000448 INF: FPGA: Recv @CAMSNAP 380 17-03-17 23:42:04.278 -07 000000618 INF: FPGA: Recv CAMSNAP 17-03-17 23:42:04.278 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall 17-03-17 23:42:04.358 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1165594328, 0x0, 559484976) end. Duration was 115 ms. 17-03-17 23:42:04.358 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:42:04.358 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-17 23:42:04.358 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms. 17-03-17 23:42:04.378 -07 000000541 INF: Autofocus start 17-03-17 23:42:04.378 -07 000000541 INF: MeasureProfile start 17-03-17 23:42:04.378 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:42:04.378 -07 000000502 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:42:04.388 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 23:42:04.388 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 23:42:04.388 -07 000000541 INF: MeasureProfile done 17-03-17 23:42:04.388 -07 000000541 INF: X=-16 Z correction [um]=-0.08128808 17-03-17 23:42:04.388 -07 000000541 INF: Autofocus finished 17-03-17 23:42:04.588 -07 000000409 INF: FPGA: Recv FOCMRRIMG 17-03-17 23:42:04.588 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 23:42:04.588 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22998046875, Z-position -0.138022056461687. ---------- 17-03-17 23:42:04.598 -07 000000610 INF: Cycle 77 Tile 5 Exposure Settings A 1037 G 500 T 500 C 1037 17-03-17 23:42:04.598 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28643, sync = True, waitForSettling = True) 17-03-17 23:42:04.598 -07 000000610 INF: Z Motor: Moving to -0.131119 mm, started at -0.138022 mm, distance = 6.90 um 17-03-17 23:42:04.598 -07 000000610 INF: FPGA: Xmit ZDACW 28643\n [Z Motor] 17-03-17 23:42:04.598 -07 000000459 INF: FPGA: Recv ZDACW 17-03-17 23:42:04.608 -07 000000610 INF: FPGA: 'ZDACW 28643' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:42:04.608 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:42:04.608 -07 000000480 INF: FPGA: Recv ZDACR 28643 17-03-17 23:42:04.618 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:04.618 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:42:04.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:04.768 -07 000000409 INF: FPGA: Recv ZSGSRD 29703 17-03-17 23:42:04.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:42:04.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:04.778 -07 000000541 INF: FPGA: Recv ZSGSRD 29706 17-03-17 23:42:04.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:04.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:04.788 -07 000000475 INF: FPGA: Recv ZSGSRD 29698 17-03-17 23:42:04.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:04.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:04.798 -07 000000512 INF: FPGA: Recv ZSGSRD 29700 17-03-17 23:42:04.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:04.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:04.808 -07 000000480 INF: FPGA: Recv ZSGSRD 29702 17-03-17 23:42:04.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:04.818 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:04.818 -07 000000547 INF: FPGA: Recv ZSGSRD 29694 17-03-17 23:42:04.828 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:04.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:04.828 -07 000000433 INF: FPGA: Recv ZSGSRD 29701 17-03-17 23:42:04.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:04.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:04.838 -07 000000502 INF: FPGA: Recv ZSGSRD 29698 17-03-17 23:42:04.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:04.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:04.848 -07 000000438 INF: FPGA: Recv ZSGSRD 29703 17-03-17 23:42:04.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:04.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:04.858 -07 000000480 INF: FPGA: Recv ZSGSRD 29699 17-03-17 23:42:04.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:04.868 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:42:04.868 -07 000000486 INF: FPGA: Recv ZPIEZORD 26000 17-03-17 23:42:04.878 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:04.878 -07 000000610 INF: Z Motor: Piezo is near 35.5 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.371 V. Piezo Error = -8.2 V. 17-03-17 23:42:04.878 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.1 um, Read 10 ADC samples: Avg = 29700 (-130.3 uncal um), Error = 0.8 uncal um, Median = 29700 (-130.3 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29694 (-130.3 uncal um), Max = 29706 (-130.4 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um) 17-03-17 23:42:04.878 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29700, posNoise = 6, negNoise = 6 17-03-17 23:42:04.878 -07 000000610 INF: Z Motor: After move to -0.131119, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:42:04.878 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms) 17-03-17 23:42:04.878 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:42:04.878 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:42:04.878 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:42:04.878 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:42:04.878 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 23:42:04.878 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:42:04.878 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 23:42:04.878 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 23:42:04.878 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:42:04.878 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 23:42:04.878 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-17 23:42:04.878 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 23:42:04.888 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-17 23:42:04.888 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 23:42:04.888 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-17 23:42:04.888 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 23:42:04.898 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 17 ms. 17-03-17 23:42:04.908 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms. 17-03-17 23:42:04.908 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 17 ms. 17-03-17 23:42:04.908 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms. 17-03-17 23:42:04.908 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 28819 150\n [Camera] 17-03-17 23:42:05.108 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 23:42:06.148 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229 17-03-17 23:42:06.148 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229 17-03-17 23:42:06.148 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:42:06.148 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229 17-03-17 23:42:06.148 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229 17-03-17 23:42:06.148 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:42:06.268 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:42:06.268 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) start. 17-03-17 23:42:06.268 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:42:06.268 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start. 17-03-17 23:42:06.338 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28819 1422 17-03-17 23:42:06.488 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572 17-03-17 23:42:06.658 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2281705520, 0x0, 391868352) end. Duration was 393 ms. 17-03-17 23:42:06.658 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms. 17-03-17 23:42:06.658 -07 000000627 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:42:06.658 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 392 ms. 17-03-17 23:42:06.658 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms. 17-03-17 23:42:06.658 -07 000000512 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:42:06.658 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:42:06.658 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 516 ms. 17-03-17 23:42:06.668 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:42:06.668 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 524 ms. 17-03-17 23:42:06.988 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072 17-03-17 23:42:06.988 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072 17-03-17 23:42:06.988 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:42:06.988 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072 17-03-17 23:42:06.988 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072 17-03-17 23:42:06.988 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:42:06.988 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:42:06.988 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start. 17-03-17 23:42:06.988 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:42:06.988 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start. 17-03-17 23:42:07.088 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:42:07.088 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:42:07.178 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 2265 17-03-17 23:42:07.178 -07 000000459 INF: FPGA: Recv CAMDBLSNAP 17-03-17 23:42:07.178 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 28819 150' command took 2 ms to send, 2264 ms to get response, and 2272 ms overall 17-03-17 23:42:07.178 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-17 23:42:07.178 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22998046875, Z-Position -0.131122452621435. ------ 17-03-17 23:42:07.178 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:42:07.178 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13793 mm 17-03-17 23:42:07.188 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 23:42:07.188 -07 000000576 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:42:07.188 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True) 17-03-17 23:42:07.188 -07 000000541 INF: Y Motor: Moving to 64.0626 mm, started at 63.2300 mm, delta = 0.8326 mm 17-03-17 23:42:07.188 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 30130, sync = True, waitForSettling = False) 17-03-17 23:42:07.188 -07 000000438 INF: Z Motor: Moving to -0.137926 mm, started at -0.131122 mm, distance = -6.80 um 17-03-17 23:42:07.198 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 1 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:42:07.198 -07 000000438 INF: FPGA: Xmit ZDACW 30130\n [Z Motor] 17-03-17 23:42:07.198 -07 000000618 INF: FPGA: Recv ZDACW 17-03-17 23:42:07.208 -07 000000438 INF: FPGA: 'ZDACW 30130' command took 0 ms to send, 0 ms to get response, and 14 ms overall 17-03-17 23:42:07.208 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:42:07.208 -07 000000627 INF: FPGA: Recv YRDPOS 129496 17-03-17 23:42:07.218 -07 000000547 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 23:42:07.218 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall 17-03-17 23:42:07.218 -07 000000541 INF: Y Motor: Encoder = 129496 = motor step 101168.8 = 63.2305 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:42:07.218 -07 000000541 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 23:42:07.218 -07 000000541 INF: Y Motor: Moving 1331 steps-5 17-03-17 23:42:07.228 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:42:07.228 -07 000000409 INF: FPGA: Recv ZDACR 30130 17-03-17 23:42:07.238 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 23:42:07.238 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-17 23:42:07.238 -07 000000438 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet)) 17-03-17 23:42:07.378 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 391 ms. 17-03-17 23:42:07.378 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms. 17-03-17 23:42:07.378 -07 000000433 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:42:07.388 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:42:07.388 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 395 ms. 17-03-17 23:42:07.388 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms. 17-03-17 23:42:07.388 -07 000000623 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:42:07.388 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:42:07.388 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms. 17-03-17 23:42:07.388 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 402 ms. 17-03-17 23:42:07.418 -07 000000448 INF: FPGA: Recv FOCMRRFOC 17-03-17 23:42:07.418 -07 000000547 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 225 ms overall 17-03-17 23:42:07.608 -07 000000438 INF: FPGA: Recv YMVTILE 17-03-17 23:42:07.608 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 391 ms overall 17-03-17 23:42:07.648 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:42:07.648 -07 000000480 INF: FPGA: Recv YRDPOS 131201 17-03-17 23:42:07.658 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:42:07.658 -07 000000541 INF: Y Motor: Encoder = 131201 = motor step 102500.8 = 64.0630 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:42:07.658 -07 000000541 INF: Y Motor: Position error before settling (table move) = 1 encoder counts (0.000 mm) 17-03-17 23:42:07.658 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.833 mm, average velocity = 2.129 mm/sec 17-03-17 23:42:08.168 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 3.997626, 17-03-17 23:42:08.608 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:42:08.608 -07 000000627 INF: FPGA: Recv YRDPOS 131201 17-03-17 23:42:08.618 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:08.618 -07 000000541 INF: Y Motor: Encoder = 131201 = motor step 102500.8 = 64.0630 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:42:08.618 -07 000000541 INF: Y Motor: After move to 64.062607, error = 0.000381, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 23:42:08.618 -07 000000541 INF: Y Motor: Position error after settling (table move) = 1 encoder counts (0.000 mm), Delta during settling = 0 counts (0.000 mm) 17-03-17 23:42:08.618 -07 000000541 INF: Y Motor: Moved to 64.0630 after 1429 ms (table move) 17-03-17 23:42:08.618 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137926 mm (DAC = 30130) 17-03-17 23:42:08.618 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:08.628 -07 000000618 INF: FPGA: Recv ZSGSRD 30758 17-03-17 23:42:08.628 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall 17-03-17 23:42:08.628 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:08.628 -07 000000409 INF: FPGA: Recv ZSGSRD 30766 17-03-17 23:42:08.638 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:08.638 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:08.638 -07 000000561 INF: FPGA: Recv ZSGSRD 30759 17-03-17 23:42:08.648 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:08.648 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:08.648 -07 000000438 INF: FPGA: Recv ZSGSRD 30764 17-03-17 23:42:08.658 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:08.658 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:08.658 -07 000000433 INF: FPGA: Recv ZSGSRD 30766 17-03-17 23:42:08.668 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:08.668 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:08.668 -07 000000576 INF: FPGA: Recv ZSGSRD 30759 17-03-17 23:42:08.678 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:08.678 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:08.678 -07 000000627 INF: FPGA: Recv ZSGSRD 30761 17-03-17 23:42:08.688 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:08.688 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:08.688 -07 000000618 INF: FPGA: Recv ZSGSRD 30759 17-03-17 23:42:08.698 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:08.698 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:08.698 -07 000000433 INF: FPGA: Recv ZSGSRD 30758 17-03-17 23:42:08.708 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:08.708 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:08.708 -07 000000576 INF: FPGA: Recv ZSGSRD 30760 17-03-17 23:42:08.718 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:08.718 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:42:08.718 -07 000000475 INF: FPGA: Recv ZPIEZORD 27389 17-03-17 23:42:08.728 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:08.728 -07 000000512 INF: Z Motor: Piezo is near 38.5 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.598 V. Piezo Error = -7.5 V. 17-03-17 23:42:08.728 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.9 um, Read 10 ADC samples: Avg = 30761 (-137.1 uncal um), Error = 0.8 uncal um, Median = 30760 (-137.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 30758 (-137.1 uncal um), Max = 30766 (-137.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um) 17-03-17 23:42:08.728 -07 000000512 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30761, posNoise = 5, negNoise = 3 17-03-17 23:42:08.728 -07 000000512 INF: Z Motor: After move to -0.137926, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:42:08.728 -07 000000512 INF: Z Motor: Settle wait time = 1431 ms, measure time = 103 ms (allowed 150 ms), total time = 1534 ms 17-03-17 23:42:08.728 -07 000000512 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms 17-03-17 23:42:08.778 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1590 ms 17-03-17 23:42:08.778 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 23:42:08.778 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:42:08.778 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:42:08.778 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:42:08.778 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 23:42:08.778 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:42:08.778 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:42:08.778 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:42:08.778 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 23:42:08.788 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-17 23:42:08.788 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 23:42:08.788 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms. 17-03-17 23:42:08.788 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms. 17-03-17 23:42:08.798 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:42:08.838 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 23:42:09.138 -07 000000486 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-17 23:42:09.138 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-17 23:42:09.138 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 23:42:09.138 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1165594328, 0x0, 559484976) start. 17-03-17 23:42:09.178 -07 000000480 INF: FPGA: Recv @CAMSNAP 380 17-03-17 23:42:09.178 -07 000000482 INF: FPGA: Recv CAMSNAP 17-03-17 23:42:09.178 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 2 ms to send, 376 ms to get response, and 384 ms overall 17-03-17 23:42:09.268 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1165594328, 0x0, 559484976) end. Duration was 124 ms. 17-03-17 23:42:09.268 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:42:09.268 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-17 23:42:09.268 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 126 ms. 17-03-17 23:42:09.278 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:42:09.278 -07 000000618 INF: Autofocus start 17-03-17 23:42:09.278 -07 000000618 INF: MeasureProfile start 17-03-17 23:42:09.278 -07 000000561 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:42:09.288 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 23:42:09.288 -07 000000433 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 23:42:09.288 -07 000000618 INF: MeasureProfile done 17-03-17 23:42:09.288 -07 000000618 INF: X=-69 Z correction [um]=-0.3392825 17-03-17 23:42:09.288 -07 000000618 INF: Autofocus finished 17-03-17 23:42:09.488 -07 000000576 INF: FPGA: Recv FOCMRRIMG 17-03-17 23:42:09.488 -07 000000433 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 23:42:09.488 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.06298828125, Z-position -0.137938541703844. ---------- 17-03-17 23:42:09.488 -07 000000610 INF: Cycle 77 Tile 6 Exposure Settings A 1037 G 500 T 500 C 1037 17-03-17 23:42:09.498 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28569, sync = True, waitForSettling = True) 17-03-17 23:42:09.498 -07 000000610 INF: Z Motor: Moving to -0.130780 mm, started at -0.137939 mm, distance = 7.16 um 17-03-17 23:42:09.498 -07 000000610 INF: FPGA: Xmit ZDACW 28569\n [Z Motor] 17-03-17 23:42:09.498 -07 000000541 INF: FPGA: Recv ZDACW 17-03-17 23:42:09.508 -07 000000610 INF: FPGA: 'ZDACW 28569' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:09.508 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:42:09.508 -07 000000433 INF: FPGA: Recv ZDACR 28569 17-03-17 23:42:09.518 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:09.518 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:42:09.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:09.668 -07 000000502 INF: FPGA: Recv ZSGSRD 29646 17-03-17 23:42:09.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:09.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:09.678 -07 000000459 INF: FPGA: Recv ZSGSRD 29649 17-03-17 23:42:09.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:09.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:09.688 -07 000000409 INF: FPGA: Recv ZSGSRD 29645 17-03-17 23:42:09.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:09.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:09.698 -07 000000561 INF: FPGA: Recv ZSGSRD 29647 17-03-17 23:42:09.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:09.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:09.708 -07 000000512 INF: FPGA: Recv ZSGSRD 29650 17-03-17 23:42:09.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:09.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:09.718 -07 000000576 INF: FPGA: Recv ZSGSRD 29649 17-03-17 23:42:09.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:09.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:09.728 -07 000000433 INF: FPGA: Recv ZSGSRD 29648 17-03-17 23:42:09.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:09.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:09.738 -07 000000502 INF: FPGA: Recv ZSGSRD 29649 17-03-17 23:42:09.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:09.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:09.748 -07 000000438 INF: FPGA: Recv ZSGSRD 29649 17-03-17 23:42:09.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:09.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:09.758 -07 000000475 INF: FPGA: Recv ZSGSRD 29649 17-03-17 23:42:09.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:09.768 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:42:09.768 -07 000000482 INF: FPGA: Recv ZPIEZORD 25915 17-03-17 23:42:09.778 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:09.778 -07 000000610 INF: Z Motor: Piezo is near 35.4 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.359 V. Piezo Error = -8.2 V. 17-03-17 23:42:09.778 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.8 um, Read 10 ADC samples: Avg = 29648 (-130.0 uncal um), Error = 0.8 uncal um, Median = 29649 (-130.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 29645 (-130.0 uncal um), Max = 29650 (-130.0 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um) 17-03-17 23:42:09.778 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29648, posNoise = 2, negNoise = 3 17-03-17 23:42:09.778 -07 000000610 INF: Z Motor: After move to -0.130780, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:42:09.778 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms) 17-03-17 23:42:09.778 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:42:09.778 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:42:09.778 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:42:09.778 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 23:42:09.778 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:42:09.778 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:42:09.778 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 23:42:09.778 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 23:42:09.778 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:42:09.778 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 23:42:09.778 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms. 17-03-17 23:42:09.778 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 23:42:09.778 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-17 23:42:09.778 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 23:42:09.788 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-17 23:42:09.788 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 23:42:09.798 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms. 17-03-17 23:42:09.798 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms. 17-03-17 23:42:09.798 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 17 ms. 17-03-17 23:42:09.798 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms. 17-03-17 23:42:09.808 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 28745 150\n [Camera] 17-03-17 23:42:10.008 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 23:42:11.048 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229 17-03-17 23:42:11.048 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229 17-03-17 23:42:11.048 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:42:11.048 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:42:11.048 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) start. 17-03-17 23:42:11.048 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229 17-03-17 23:42:11.048 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229 17-03-17 23:42:11.048 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:42:11.048 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:42:11.048 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start. 17-03-17 23:42:11.238 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28745 1422 17-03-17 23:42:11.388 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572 17-03-17 23:42:11.428 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 381 ms. 17-03-17 23:42:11.428 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms. 17-03-17 23:42:11.428 -07 000000480 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:42:11.428 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:42:11.438 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) end. Duration was 390 ms. 17-03-17 23:42:11.438 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms. 17-03-17 23:42:11.438 -07 000000433 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:42:11.438 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:42:11.438 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 394 ms. 17-03-17 23:42:11.438 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 392 ms. 17-03-17 23:42:11.888 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072 17-03-17 23:42:11.888 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072 17-03-17 23:42:11.888 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:42:12.008 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072 17-03-17 23:42:12.008 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072 17-03-17 23:42:12.008 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:42:12.008 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:42:12.008 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) start. 17-03-17 23:42:12.018 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:42:12.018 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1422920864, 0x0, 418435064) start. 17-03-17 23:42:12.078 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 2265 17-03-17 23:42:12.078 -07 000000433 INF: FPGA: Recv CAMDBLSNAP 17-03-17 23:42:12.078 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 28745 150' command took 2 ms to send, 2264 ms to get response, and 2272 ms overall 17-03-17 23:42:12.078 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-17 23:42:12.078 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.06298828125, Z-Position -0.130788393590064. ------ 17-03-17 23:42:12.088 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:42:12.088 -07 000000541 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13759 mm 17-03-17 23:42:12.088 -07 000000541 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 23:42:12.088 -07 000000486 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:42:12.088 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True) 17-03-17 23:42:12.088 -07 000000561 INF: Y Motor: Moving to 64.8926 mm, started at 64.0630 mm, delta = 0.8296 mm 17-03-17 23:42:12.088 -07 000000618 INF: Z Motor: Entering MoveAbsStepped (DAC = 30056, sync = True, waitForSettling = False) 17-03-17 23:42:12.088 -07 000000618 INF: Z Motor: Moving to -0.137588 mm, started at -0.130788 mm, distance = -6.80 um 17-03-17 23:42:12.088 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:42:12.088 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:42:12.098 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:42:12.098 -07 000000618 INF: FPGA: Xmit ZDACW 30056\n [Z Motor] 17-03-17 23:42:12.098 -07 000000547 INF: FPGA: Recv ZDACW 17-03-17 23:42:12.108 -07 000000618 INF: FPGA: 'ZDACW 30056' command took 0 ms to send, 0 ms to get response, and 14 ms overall 17-03-17 23:42:12.108 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:42:12.108 -07 000000409 INF: FPGA: Recv YRDPOS 131201 17-03-17 23:42:12.118 -07 000000475 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 23:42:12.118 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall 17-03-17 23:42:12.118 -07 000000561 INF: Y Motor: Encoder = 131201 = motor step 102500.8 = 64.0630 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:42:12.118 -07 000000561 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 23:42:12.118 -07 000000561 INF: Y Motor: Moving 1327 steps1 17-03-17 23:42:12.128 -07 000000618 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:42:12.128 -07 000000576 INF: FPGA: Recv ZDACR 30056 17-03-17 23:42:12.138 -07 000000618 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-17 23:42:12.138 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 23:42:12.138 -07 000000618 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet)) 17-03-17 23:42:12.318 -07 000000433 INF: FPGA: Recv FOCMRRFOC 17-03-17 23:42:12.318 -07 000000475 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall 17-03-17 23:42:12.408 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) end. Duration was 399 ms. 17-03-17 23:42:12.408 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms. 17-03-17 23:42:12.408 -07 000000438 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:42:12.408 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 1422920864, 0x0, 418435064) end. Duration was 393 ms. 17-03-17 23:42:12.408 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms. 17-03-17 23:42:12.408 -07 000000459 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:42:12.408 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:42:12.408 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 525 ms. 17-03-17 23:42:12.408 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:42:12.418 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms. 17-03-17 23:42:12.508 -07 000000409 INF: FPGA: Recv YMVTILE 17-03-17 23:42:12.508 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall 17-03-17 23:42:12.548 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:42:12.548 -07 000000502 INF: FPGA: Recv YRDPOS 132884 17-03-17 23:42:12.558 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 23:42:12.558 -07 000000561 INF: Y Motor: Encoder = 132884 = motor step 103815.6 = 64.8848 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:42:12.558 -07 000000561 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm) 17-03-17 23:42:12.558 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.830 mm, average velocity = 2.084 mm/sec 17-03-17 23:42:13.508 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:42:13.508 -07 000000438 INF: FPGA: Recv YRDPOS 132884 17-03-17 23:42:13.518 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:42:13.518 -07 000000561 INF: Y Motor: Encoder = 132884 = motor step 103815.6 = 64.8848 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:42:13.538 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 4.037119, 17-03-17 23:42:13.538 -07 000000561 INF: Y Motor: After move to 64.892609, error = -0.007843, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 23:42:13.538 -07 000000561 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm) 17-03-17 23:42:13.538 -07 000000561 INF: Y Motor: Moved to 64.8848 after 1451 ms (table move) 17-03-17 23:42:13.538 -07 000000541 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137588 mm (DAC = 30056) 17-03-17 23:42:13.548 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:13.548 -07 000000433 INF: FPGA: Recv ZSGSRD 30707 17-03-17 23:42:13.558 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:42:13.578 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:13.578 -07 000000561 INF: FPGA: Recv ZSGSRD 30705 17-03-17 23:42:13.588 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-17 23:42:13.608 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:13.608 -07 000000459 INF: FPGA: Recv ZSGSRD 30717 17-03-17 23:42:13.618 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-17 23:42:13.618 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:13.618 -07 000000448 INF: FPGA: Recv ZSGSRD 30712 17-03-17 23:42:13.628 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:13.628 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:13.628 -07 000000486 INF: FPGA: Recv ZSGSRD 30703 17-03-17 23:42:13.638 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:13.638 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:13.638 -07 000000623 INF: FPGA: Recv ZSGSRD 30708 17-03-17 23:42:13.648 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:13.648 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:13.648 -07 000000409 INF: FPGA: Recv ZSGSRD 30706 17-03-17 23:42:13.658 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:13.658 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:13.658 -07 000000448 INF: FPGA: Recv ZSGSRD 30708 17-03-17 23:42:13.668 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:13.668 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:13.668 -07 000000512 INF: FPGA: Recv ZSGSRD 30709 17-03-17 23:42:13.678 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:13.678 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:13.678 -07 000000627 INF: FPGA: Recv ZSGSRD 30704 17-03-17 23:42:13.688 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:13.688 -07 000000541 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:42:13.688 -07 000000618 INF: FPGA: Recv ZPIEZORD 27293 17-03-17 23:42:13.698 -07 000000541 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:13.698 -07 000000541 INF: Z Motor: Piezo is near 38.3 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.586 V. Piezo Error = -7.6 V. 17-03-17 23:42:13.698 -07 000000541 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.6 um, Read 10 ADC samples: Avg = 30708 (-136.8 uncal um), Error = 0.8 uncal um, Median = 30708 (-136.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30703 (-136.8 uncal um), Max = 30717 (-136.9 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-17 23:42:13.698 -07 000000541 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30708, posNoise = 9, negNoise = 5 17-03-17 23:42:13.698 -07 000000541 INF: Z Motor: After move to -0.137588, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:42:13.698 -07 000000541 INF: Z Motor: Settle wait time = 1454 ms, measure time = 151 ms (allowed 150 ms), total time = 1605 ms 17-03-17 23:42:13.698 -07 000000541 INF: Z Motor: Warning: Actual position measuring time = 151 ms, longer than max expected time of 150 ms 17-03-17 23:42:13.698 -07 000000541 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1609 ms 17-03-17 23:42:13.698 -07 000000541 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 23:42:13.698 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:42:13.698 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:42:13.698 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:42:13.698 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:42:13.698 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 23:42:13.698 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:42:13.698 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:42:13.698 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 23:42:13.708 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-17 23:42:13.708 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 23:42:13.718 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms. 17-03-17 23:42:13.718 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms. 17-03-17 23:42:13.718 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:42:13.768 -07 000000448 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 23:42:14.068 -07 000000547 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-17 23:42:14.068 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-17 23:42:14.068 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 23:42:14.068 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1458343128, 0x0, 559484976) start. 17-03-17 23:42:14.108 -07 000000623 INF: FPGA: Recv @CAMSNAP 380 17-03-17 23:42:14.108 -07 000000541 INF: FPGA: Recv CAMSNAP 17-03-17 23:42:14.108 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall 17-03-17 23:42:14.198 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1458343128, 0x0, 559484976) end. Duration was 125 ms. 17-03-17 23:42:14.198 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:42:14.198 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-17 23:42:14.198 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms. 17-03-17 23:42:14.208 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:42:14.208 -07 000000433 INF: Autofocus start 17-03-17 23:42:14.208 -07 000000433 INF: MeasureProfile start 17-03-17 23:42:14.208 -07 000000623 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:42:14.218 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 23:42:14.218 -07 000000627 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 23:42:14.218 -07 000000433 INF: MeasureProfile done 17-03-17 23:42:14.218 -07 000000433 INF: X=-128 Z correction [um]=-0.6264838 17-03-17 23:42:14.218 -07 000000433 INF: Autofocus finished 17-03-17 23:42:14.418 -07 000000502 INF: FPGA: Recv FOCMRRIMG 17-03-17 23:42:14.418 -07 000000627 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 23:42:14.418 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.884765625, Z-position -0.13759805846033. ---------- 17-03-17 23:42:14.418 -07 000000610 INF: Cycle 77 Tile 7 Exposure Settings A 1037 G 500 T 500 C 1037 17-03-17 23:42:14.418 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28432, sync = True, waitForSettling = True) 17-03-17 23:42:14.428 -07 000000610 INF: Z Motor: Moving to -0.130153 mm, started at -0.137598 mm, distance = 7.44 um 17-03-17 23:42:14.428 -07 000000610 INF: FPGA: Xmit ZDACW 28432\n [Z Motor] 17-03-17 23:42:14.428 -07 000000547 INF: FPGA: Recv ZDACW 17-03-17 23:42:14.438 -07 000000610 INF: FPGA: 'ZDACW 28432' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:42:14.438 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:42:14.438 -07 000000576 INF: FPGA: Recv ZDACR 28432 17-03-17 23:42:14.448 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:14.448 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:42:14.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:14.598 -07 000000459 INF: FPGA: Recv ZSGSRD 29551 17-03-17 23:42:14.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:42:14.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:14.608 -07 000000409 INF: FPGA: Recv ZSGSRD 29549 17-03-17 23:42:14.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:14.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:14.618 -07 000000502 INF: FPGA: Recv ZSGSRD 29547 17-03-17 23:42:14.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:14.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:14.628 -07 000000623 INF: FPGA: Recv ZSGSRD 29549 17-03-17 23:42:14.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:14.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:14.638 -07 000000576 INF: FPGA: Recv ZSGSRD 29552 17-03-17 23:42:14.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:14.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:14.648 -07 000000448 INF: FPGA: Recv ZSGSRD 29554 17-03-17 23:42:14.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:14.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:14.658 -07 000000409 INF: FPGA: Recv ZSGSRD 29547 17-03-17 23:42:14.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:14.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:14.668 -07 000000475 INF: FPGA: Recv ZSGSRD 29550 17-03-17 23:42:14.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:14.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:14.678 -07 000000486 INF: FPGA: Recv ZSGSRD 29553 17-03-17 23:42:14.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:42:14.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:14.688 -07 000000561 INF: FPGA: Recv ZSGSRD 29548 17-03-17 23:42:14.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:14.698 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:42:14.698 -07 000000480 INF: FPGA: Recv ZPIEZORD 25765 17-03-17 23:42:14.708 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:14.708 -07 000000610 INF: Z Motor: Piezo is near 35.0 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.338 V. Piezo Error = -8.3 V. 17-03-17 23:42:14.708 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.2 um, Read 10 ADC samples: Avg = 29550 (-129.4 uncal um), Error = 0.8 uncal um, Median = 29550 (-129.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29547 (-129.4 uncal um), Max = 29554 (-129.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um) 17-03-17 23:42:14.708 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29550, posNoise = 4, negNoise = 3 17-03-17 23:42:14.708 -07 000000610 INF: Z Motor: After move to -0.130153, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:42:14.708 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms) 17-03-17 23:42:14.708 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:42:14.708 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:42:14.708 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:42:14.708 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:42:14.708 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 23:42:14.708 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:42:14.708 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 23:42:14.708 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 23:42:14.708 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:42:14.708 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 23:42:14.708 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-17 23:42:14.708 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 23:42:14.708 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-17 23:42:14.708 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 23:42:14.718 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms. 17-03-17 23:42:14.718 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 23:42:14.728 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms. 17-03-17 23:42:14.728 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms. 17-03-17 23:42:14.728 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms. 17-03-17 23:42:14.728 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms. 17-03-17 23:42:14.738 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 28609 150\n [Camera] 17-03-17 23:42:14.938 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 23:42:15.968 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1231 17-03-17 23:42:15.968 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1231 17-03-17 23:42:15.978 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:42:15.978 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:42:15.978 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start. 17-03-17 23:42:15.978 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1231 17-03-17 23:42:15.978 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1231 17-03-17 23:42:15.978 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:42:15.978 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:42:15.978 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start. 17-03-17 23:42:16.168 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28609 1422 17-03-17 23:42:16.308 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572 17-03-17 23:42:16.378 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 402 ms. 17-03-17 23:42:16.378 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms. 17-03-17 23:42:16.378 -07 000000618 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:42:16.378 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:42:16.378 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms. 17-03-17 23:42:16.378 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 404 ms. 17-03-17 23:42:16.378 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms. 17-03-17 23:42:16.378 -07 000000512 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:42:16.388 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:42:16.388 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms. 17-03-17 23:42:16.808 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072 17-03-17 23:42:16.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072 17-03-17 23:42:16.818 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:42:16.918 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072 17-03-17 23:42:16.918 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072 17-03-17 23:42:16.928 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:42:16.928 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:42:16.928 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start. 17-03-17 23:42:16.928 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:42:16.928 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) start. 17-03-17 23:42:17.008 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 2265 17-03-17 23:42:17.008 -07 000000480 INF: FPGA: Recv CAMDBLSNAP 17-03-17 23:42:17.008 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 28609 150' command took 2 ms to send, 2262 ms to get response, and 2272 ms overall 17-03-17 23:42:17.008 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-17 23:42:17.008 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.884765625, Z-Position -0.130158820800171. ------ 17-03-17 23:42:17.008 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:42:17.008 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13696 mm 17-03-17 23:42:17.008 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 23:42:17.018 -07 000000512 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True) 17-03-17 23:42:17.018 -07 000000512 INF: Y Motor: Moving to 65.7226 mm, started at 64.8848 mm, delta = 0.8378 mm 17-03-17 23:42:17.018 -07 000000433 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:42:17.018 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-17 23:42:17.018 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:42:17.018 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 29919, sync = True, waitForSettling = False) 17-03-17 23:42:17.018 -07 000000623 INF: Z Motor: Moving to -0.136960 mm, started at -0.130159 mm, distance = -6.80 um 17-03-17 23:42:17.018 -07 000000547 INF: FPGA: Recv YRDPOS 132884 17-03-17 23:42:17.028 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:17.028 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 23:42:17.028 -07 000000512 INF: Y Motor: Encoder = 132884 = motor step 103815.6 = 64.8848 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:42:17.028 -07 000000512 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 23:42:17.028 -07 000000512 INF: Y Motor: Moving 1341 steps-16 17-03-17 23:42:17.038 -07 000000623 INF: FPGA: Xmit ZDACW 29919\n [Z Motor] 17-03-17 23:42:17.038 -07 000000433 INF: FPGA: Recv ZDACW 17-03-17 23:42:17.048 -07 000000512 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 23:42:17.048 -07 000000623 INF: FPGA: 'ZDACW 29919' command took 0 ms to send, 0 ms to get response, and 28 ms overall 17-03-17 23:42:17.058 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:42:17.058 -07 000000502 INF: FPGA: Recv ZDACR 29919 17-03-17 23:42:17.068 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-17 23:42:17.068 -07 000000623 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet)) 17-03-17 23:42:17.088 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:42:17.088 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:42:17.228 -07 000000482 INF: FPGA: Recv FOCMRRFOC 17-03-17 23:42:17.228 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 211 ms overall 17-03-17 23:42:17.328 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) end. Duration was 397 ms. 17-03-17 23:42:17.328 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms. 17-03-17 23:42:17.328 -07 000000561 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:42:17.328 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 402 ms. 17-03-17 23:42:17.328 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms. 17-03-17 23:42:17.328 -07 000000541 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:42:17.328 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:42:17.328 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:42:17.328 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 517 ms. 17-03-17 23:42:17.338 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms. 17-03-17 23:42:17.428 -07 000000433 INF: FPGA: Recv YMVTILE 17-03-17 23:42:17.428 -07 000000512 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 399 ms overall 17-03-17 23:42:17.468 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:42:17.468 -07 000000480 INF: FPGA: Recv YRDPOS 134594 17-03-17 23:42:17.478 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:42:17.478 -07 000000512 INF: Y Motor: Encoder = 134594 = motor step 105151.6 = 65.7197 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:42:17.478 -07 000000512 INF: Y Motor: Position error before settling (table move) = -6 encoder counts (-0.003 mm) 17-03-17 23:42:17.478 -07 000000512 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 399 ms, distance = 0.838 mm, average velocity = 2.100 mm/sec 17-03-17 23:42:18.428 -07 000000512 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:42:18.428 -07 000000627 INF: FPGA: Recv YRDPOS 134594 17-03-17 23:42:18.438 -07 000000512 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:42:18.438 -07 000000512 INF: Y Motor: Encoder = 134594 = motor step 105151.6 = 65.7197 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:42:18.438 -07 000000512 INF: Y Motor: After move to 65.722610, error = -0.002884, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 23:42:18.438 -07 000000512 INF: Y Motor: Position error after settling (table move) = -6 encoder counts (-0.003 mm), Delta during settling = 0 counts (0.000 mm) 17-03-17 23:42:18.438 -07 000000512 INF: Y Motor: Moved to 65.7197 after 1426 ms (table move) 17-03-17 23:42:18.448 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136960 mm (DAC = 29919) 17-03-17 23:42:18.448 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:18.448 -07 000000409 INF: FPGA: Recv ZSGSRD 30609 17-03-17 23:42:18.458 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:42:18.458 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:18.458 -07 000000541 INF: FPGA: Recv ZSGSRD 30605 17-03-17 23:42:18.468 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:18.468 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:18.468 -07 000000482 INF: FPGA: Recv ZSGSRD 30613 17-03-17 23:42:18.478 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:18.478 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:18.478 -07 000000502 INF: FPGA: Recv ZSGSRD 30608 17-03-17 23:42:18.488 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:18.488 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:18.488 -07 000000618 INF: FPGA: Recv ZSGSRD 30608 17-03-17 23:42:18.498 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:18.498 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:18.498 -07 000000623 INF: FPGA: Recv ZSGSRD 30614 17-03-17 23:42:18.508 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:18.508 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:18.508 -07 000000482 INF: FPGA: Recv ZSGSRD 30610 17-03-17 23:42:18.518 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:18.518 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:18.518 -07 000000502 INF: FPGA: Recv ZSGSRD 30606 17-03-17 23:42:18.528 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:18.528 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:18.528 -07 000000618 INF: FPGA: Recv ZSGSRD 30609 17-03-17 23:42:18.538 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:18.538 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:18.538 -07 000000448 INF: FPGA: Recv ZSGSRD 30610 17-03-17 23:42:18.548 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:18.548 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:42:18.548 -07 000000541 INF: FPGA: Recv ZPIEZORD 27190 17-03-17 23:42:18.558 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:18.558 -07 000000438 INF: Z Motor: Piezo is near 38.1 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.565 V. Piezo Error = -7.6 V. 17-03-17 23:42:18.558 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.0 um, Read 10 ADC samples: Avg = 30609 (-136.2 uncal um), Error = 0.8 uncal um, Median = 30609 (-136.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30605 (-136.1 uncal um), Max = 30614 (-136.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um) 17-03-17 23:42:18.558 -07 000000438 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30609, posNoise = 5, negNoise = 4 17-03-17 23:42:18.558 -07 000000438 INF: Z Motor: After move to -0.136960, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:42:18.558 -07 000000438 INF: Z Motor: Settle wait time = 1429 ms, measure time = 110 ms (allowed 150 ms), total time = 1539 ms 17-03-17 23:42:18.558 -07 000000438 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms 17-03-17 23:42:18.598 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1582 ms 17-03-17 23:42:18.598 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 23:42:18.598 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:42:18.598 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:42:18.598 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:42:18.598 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:42:18.598 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 23:42:18.608 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:42:18.608 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-17 23:42:18.608 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 23:42:18.608 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-17 23:42:18.608 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 23:42:18.618 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms. 17-03-17 23:42:18.618 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms. 17-03-17 23:42:18.618 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:42:18.668 -07 000000486 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 23:42:18.928 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 4.024884, 17-03-17 23:42:18.968 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-17 23:42:18.968 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-17 23:42:18.968 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 23:42:18.968 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1441468064, 0x0, 559484976) start. 17-03-17 23:42:19.008 -07 000000576 INF: FPGA: Recv @CAMSNAP 380 17-03-17 23:42:19.008 -07 000000438 INF: FPGA: Recv CAMSNAP 17-03-17 23:42:19.008 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 387 ms overall 17-03-17 23:42:19.088 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1441468064, 0x0, 559484976) end. Duration was 120 ms. 17-03-17 23:42:19.088 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:42:19.088 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-17 23:42:19.088 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 123 ms. 17-03-17 23:42:19.108 -07 000000512 INF: Autofocus start 17-03-17 23:42:19.108 -07 000000512 INF: MeasureProfile start 17-03-17 23:42:19.108 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:42:19.108 -07 000000576 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:42:19.118 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 23:42:19.118 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 23:42:19.118 -07 000000512 INF: MeasureProfile done 17-03-17 23:42:19.118 -07 000000512 INF: X=0 Z correction [um]=-0.02394831 17-03-17 23:42:19.118 -07 000000512 INF: Autofocus finished 17-03-17 23:42:19.318 -07 000000475 INF: FPGA: Recv FOCMRRIMG 17-03-17 23:42:19.318 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 23:42:19.318 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.7197265625, Z-position -0.136962061458296. ---------- 17-03-17 23:42:19.318 -07 000000610 INF: Cycle 77 Tile 8 Exposure Settings A 1037 G 500 T 500 C 1037 17-03-17 23:42:19.318 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28427, sync = True, waitForSettling = True) 17-03-17 23:42:19.318 -07 000000610 INF: Z Motor: Moving to -0.130130 mm, started at -0.136962 mm, distance = 6.83 um 17-03-17 23:42:19.318 -07 000000610 INF: FPGA: Xmit ZDACW 28427\n [Z Motor] 17-03-17 23:42:19.328 -07 000000438 INF: FPGA: Recv ZDACW 17-03-17 23:42:19.338 -07 000000610 INF: FPGA: 'ZDACW 28427' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:42:19.338 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:42:19.338 -07 000000627 INF: FPGA: Recv ZDACR 28427 17-03-17 23:42:19.348 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:19.348 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:42:19.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:19.498 -07 000000480 INF: FPGA: Recv ZSGSRD 29551 17-03-17 23:42:19.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:42:19.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:19.508 -07 000000512 INF: FPGA: Recv ZSGSRD 29549 17-03-17 23:42:19.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:19.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:19.518 -07 000000618 INF: FPGA: Recv ZSGSRD 29546 17-03-17 23:42:19.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:19.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:19.528 -07 000000409 INF: FPGA: Recv ZSGSRD 29544 17-03-17 23:42:19.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:19.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:19.538 -07 000000627 INF: FPGA: Recv ZSGSRD 29542 17-03-17 23:42:19.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:19.548 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:19.548 -07 000000448 INF: FPGA: Recv ZSGSRD 29549 17-03-17 23:42:19.558 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:19.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:19.558 -07 000000541 INF: FPGA: Recv ZSGSRD 29549 17-03-17 23:42:19.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:19.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:19.568 -07 000000433 INF: FPGA: Recv ZSGSRD 29546 17-03-17 23:42:19.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:19.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:19.578 -07 000000502 INF: FPGA: Recv ZSGSRD 29553 17-03-17 23:42:19.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:19.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:19.588 -07 000000623 INF: FPGA: Recv ZSGSRD 29550 17-03-17 23:42:19.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:42:19.598 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:42:19.598 -07 000000448 INF: FPGA: Recv ZPIEZORD 25783 17-03-17 23:42:19.608 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:19.608 -07 000000610 INF: Z Motor: Piezo is near 35.1 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.338 V. Piezo Error = -8.3 V. 17-03-17 23:42:19.608 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.1 um, Read 10 ADC samples: Avg = 29548 (-129.4 uncal um), Error = 0.8 uncal um, Median = 29549 (-129.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29542 (-129.3 uncal um), Max = 29553 (-129.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um) 17-03-17 23:42:19.608 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29548, posNoise = 5, negNoise = 6 17-03-17 23:42:19.608 -07 000000610 INF: Z Motor: After move to -0.130130, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:42:19.608 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms) 17-03-17 23:42:19.608 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:42:19.608 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:42:19.608 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:42:19.608 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:42:19.608 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 23:42:19.608 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:42:19.608 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 23:42:19.608 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 23:42:19.608 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:42:19.608 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 23:42:19.608 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-17 23:42:19.608 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 23:42:19.608 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms. 17-03-17 23:42:19.608 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 23:42:19.618 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-17 23:42:19.618 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 23:42:19.628 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms. 17-03-17 23:42:19.628 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms. 17-03-17 23:42:19.628 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms. 17-03-17 23:42:19.628 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms. 17-03-17 23:42:19.628 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 28603 150\n [Camera] 17-03-17 23:42:19.828 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 23:42:20.868 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229 17-03-17 23:42:20.868 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229 17-03-17 23:42:20.868 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:42:20.878 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229 17-03-17 23:42:20.878 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229 17-03-17 23:42:20.878 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:42:20.878 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:42:20.878 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start. 17-03-17 23:42:20.878 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:42:20.878 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start. 17-03-17 23:42:21.058 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28603 1422 17-03-17 23:42:21.208 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572 17-03-17 23:42:21.278 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 398 ms. 17-03-17 23:42:21.278 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms. 17-03-17 23:42:21.278 -07 000000409 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:42:21.278 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 395 ms. 17-03-17 23:42:21.278 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms. 17-03-17 23:42:21.278 -07 000000448 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:42:21.278 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:42:21.278 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:42:21.278 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms. 17-03-17 23:42:21.288 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms. 17-03-17 23:42:21.708 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072 17-03-17 23:42:21.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072 17-03-17 23:42:21.708 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:42:21.718 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:42:21.718 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072 17-03-17 23:42:21.718 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072 17-03-17 23:42:21.718 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1473019208, 0x0, 391868352) start. 17-03-17 23:42:21.718 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:42:21.718 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:42:21.718 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start. 17-03-17 23:42:21.898 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP 2265 17-03-17 23:42:21.908 -07 000000438 INF: FPGA: Recv CAMDBLSNAP 17-03-17 23:42:21.908 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 28603 150' command took 2 ms to send, 2260 ms to get response, and 2272 ms overall 17-03-17 23:42:21.908 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-17 23:42:21.908 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.7197265625, Z-Position -0.130145972375888. ------ 17-03-17 23:42:21.908 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:42:21.908 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13694 mm 17-03-17 23:42:21.908 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 23:42:21.908 -07 000000409 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True) 17-03-17 23:42:21.908 -07 000000409 INF: Y Motor: Moving to 66.5526 mm, started at 65.7197 mm, delta = 0.8329 mm 17-03-17 23:42:21.908 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 29914, sync = True, waitForSettling = False) 17-03-17 23:42:21.908 -07 000000502 INF: Z Motor: Moving to -0.136938 mm, started at -0.130146 mm, distance = -6.79 um 17-03-17 23:42:21.908 -07 000000627 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:42:21.918 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-17 23:42:21.918 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:42:21.918 -07 000000438 INF: FPGA: Recv YRDPOS 134594 17-03-17 23:42:21.928 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall 17-03-17 23:42:21.928 -07 000000502 INF: FPGA: Xmit ZDACW 29914\n [Z Motor] 17-03-17 23:42:21.928 -07 000000409 INF: Y Motor: Encoder = 134594 = motor step 105151.6 = 65.7197 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:42:21.928 -07 000000409 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 23:42:21.928 -07 000000409 INF: Y Motor: Moving 1333 steps-6 17-03-17 23:42:22.038 -07 000000623 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 23:42:22.048 -07 000000475 INF: FPGA: Recv ZDACW 17-03-17 23:42:22.048 -07 000000502 INF: FPGA: 'ZDACW 29914' command took 0 ms to send, 8 ms to get response, and 132 ms overall 17-03-17 23:42:22.058 -07 000000409 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 23:42:22.068 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:42:22.068 -07 000000576 INF: FPGA: Recv ZDACR 29914 17-03-17 23:42:22.078 -07 000000502 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-17 23:42:22.078 -07 000000502 INF: Z Motor: MoveAbsStepped took 162 ms (did NOT wait for settling yet)) 17-03-17 23:42:22.088 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:42:22.098 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:42:22.118 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1473019208, 0x0, 391868352) end. Duration was 398 ms. 17-03-17 23:42:22.118 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms. 17-03-17 23:42:22.118 -07 000000561 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:42:22.118 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 397 ms. 17-03-17 23:42:22.118 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms. 17-03-17 23:42:22.118 -07 000000482 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:42:22.118 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:42:22.118 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms. 17-03-17 23:42:22.118 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms. 17-03-17 23:42:22.128 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms. 17-03-17 23:42:22.248 -07 000000502 INF: FPGA: Recv FOCMRRFOC 17-03-17 23:42:22.248 -07 000000623 INF: FPGA: 'FOCMRRFOC' command took 9 ms to send, 193 ms to get response, and 332 ms overall 17-03-17 23:42:22.428 -07 000000459 INF: FPGA: Recv YMVTILE 17-03-17 23:42:22.428 -07 000000409 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 396 ms overall 17-03-17 23:42:22.468 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:42:22.468 -07 000000576 INF: FPGA: Recv YRDPOS 136285 17-03-17 23:42:22.478 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:42:22.478 -07 000000409 INF: Y Motor: Encoder = 136285 = motor step 106472.7 = 66.5454 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:42:22.478 -07 000000409 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm) 17-03-17 23:42:22.478 -07 000000409 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 507 ms, distance = 0.833 mm, average velocity = 1.643 mm/sec 17-03-17 23:42:23.428 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:42:23.428 -07 000000627 INF: FPGA: Recv YRDPOS 136285 17-03-17 23:42:23.438 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:42:23.438 -07 000000409 INF: Y Motor: Encoder = 136285 = motor step 106472.7 = 66.5454 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:42:23.458 -07 000000409 INF: Y Motor: After move to 66.552605, error = -0.007195, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 23:42:23.458 -07 000000409 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm) 17-03-17 23:42:23.458 -07 000000409 INF: Y Motor: Moved to 66.5454 after 1547 ms (table move) 17-03-17 23:42:23.458 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136938 mm (DAC = 29914) 17-03-17 23:42:23.458 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:23.468 -07 000000448 INF: FPGA: Recv ZSGSRD 30605 17-03-17 23:42:23.468 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall 17-03-17 23:42:23.468 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:23.468 -07 000000486 INF: FPGA: Recv ZSGSRD 30606 17-03-17 23:42:23.478 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:42:23.478 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:23.478 -07 000000576 INF: FPGA: Recv ZSGSRD 30606 17-03-17 23:42:23.488 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:23.488 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:23.488 -07 000000502 INF: FPGA: Recv ZSGSRD 30600 17-03-17 23:42:23.498 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:23.498 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:23.498 -07 000000409 INF: FPGA: Recv ZSGSRD 30601 17-03-17 23:42:23.508 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:23.508 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:23.508 -07 000000433 INF: FPGA: Recv ZSGSRD 30605 17-03-17 23:42:23.518 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:23.518 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:23.518 -07 000000486 INF: FPGA: Recv ZSGSRD 30604 17-03-17 23:42:23.528 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:23.528 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:23.528 -07 000000547 INF: FPGA: Recv ZSGSRD 30610 17-03-17 23:42:23.538 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:23.538 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:23.538 -07 000000482 INF: FPGA: Recv ZSGSRD 30604 17-03-17 23:42:23.548 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:23.548 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:23.548 -07 000000502 INF: FPGA: Recv ZSGSRD 30614 17-03-17 23:42:23.558 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:23.558 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:42:23.558 -07 000000618 INF: FPGA: Recv ZPIEZORD 27218 17-03-17 23:42:23.568 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:23.568 -07 000000512 INF: Z Motor: Piezo is near 38.1 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.565 V. Piezo Error = -7.5 V. 17-03-17 23:42:23.568 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.9 um, Read 10 ADC samples: Avg = 30606 (-136.1 uncal um), Error = 0.8 uncal um, Median = 30605 (-136.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30600 (-136.1 uncal um), Max = 30614 (-136.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um) 17-03-17 23:42:23.568 -07 000000512 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30606, posNoise = 8, negNoise = 6 17-03-17 23:42:23.568 -07 000000512 INF: Z Motor: After move to -0.136938, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:42:23.568 -07 000000512 INF: Z Motor: Settle wait time = 1551 ms, measure time = 101 ms (allowed 150 ms), total time = 1652 ms 17-03-17 23:42:23.568 -07 000000512 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms 17-03-17 23:42:23.618 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1704 ms 17-03-17 23:42:23.618 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 23:42:23.618 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:42:23.618 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:42:23.618 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:42:23.618 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:42:23.618 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 23:42:23.618 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:42:23.618 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-17 23:42:23.618 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 23:42:23.628 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-17 23:42:23.628 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 23:42:23.628 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms. 17-03-17 23:42:23.628 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms. 17-03-17 23:42:23.638 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:42:23.678 -07 000000623 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 23:42:23.978 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-17 23:42:23.978 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-17 23:42:23.978 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 23:42:23.978 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 611574712, 0x0, 559484976) start. 17-03-17 23:42:24.018 -07 000000627 INF: FPGA: Recv @CAMSNAP 380 17-03-17 23:42:24.018 -07 000000482 INF: FPGA: Recv CAMSNAP 17-03-17 23:42:24.018 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall 17-03-17 23:42:24.108 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 611574712, 0x0, 559484976) end. Duration was 127 ms. 17-03-17 23:42:24.108 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:42:24.108 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-17 23:42:24.108 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms. 17-03-17 23:42:24.218 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:42:24.218 -07 000000433 INF: Autofocus start 17-03-17 23:42:24.218 -07 000000433 INF: MeasureProfile start 17-03-17 23:42:24.218 -07 000000561 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:42:24.228 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 23:42:24.228 -07 000000475 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 23:42:24.228 -07 000000433 INF: MeasureProfile done 17-03-17 23:42:24.228 -07 000000433 INF: X=-99 Z correction [um]=-0.4853171 17-03-17 23:42:24.228 -07 000000433 INF: Autofocus finished 17-03-17 23:42:24.288 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 3.979922, 17-03-17 23:42:24.428 -07 000000409 INF: FPGA: Recv FOCMRRIMG 17-03-17 23:42:24.428 -07 000000475 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 23:42:24.428 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.54541015625, Z-position -0.136942788821871. ---------- 17-03-17 23:42:24.428 -07 000000610 INF: Cycle 77 Tile 9 Exposure Settings A 1037 G 500 T 500 C 1037 17-03-17 23:42:24.438 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28321, sync = True, waitForSettling = True) 17-03-17 23:42:24.438 -07 000000610 INF: Z Motor: Moving to -0.129645 mm, started at -0.136943 mm, distance = 7.30 um 17-03-17 23:42:24.438 -07 000000610 INF: FPGA: Xmit ZDACW 28321\n [Z Motor] 17-03-17 23:42:24.438 -07 000000623 INF: FPGA: Recv ZDACW 17-03-17 23:42:24.448 -07 000000610 INF: FPGA: 'ZDACW 28321' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:24.448 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:42:24.448 -07 000000502 INF: FPGA: Recv ZDACR 28321 17-03-17 23:42:24.458 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:24.458 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:42:24.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:24.608 -07 000000512 INF: FPGA: Recv ZSGSRD 29470 17-03-17 23:42:24.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:24.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:24.638 -07 000000502 INF: FPGA: Recv ZSGSRD 29467 17-03-17 23:42:24.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-17 23:42:24.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:24.648 -07 000000623 INF: FPGA: Recv ZSGSRD 29478 17-03-17 23:42:24.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:24.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:24.668 -07 000000561 INF: FPGA: Recv ZSGSRD 29463 17-03-17 23:42:24.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-17 23:42:24.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:24.678 -07 000000502 INF: FPGA: Recv ZSGSRD 29470 17-03-17 23:42:24.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:24.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:24.698 -07 000000438 INF: FPGA: Recv ZSGSRD 29475 17-03-17 23:42:24.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 19 ms overall 17-03-17 23:42:24.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:24.708 -07 000000618 INF: FPGA: Recv ZSGSRD 29465 17-03-17 23:42:24.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:24.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:24.718 -07 000000482 INF: FPGA: Recv ZSGSRD 29471 17-03-17 23:42:24.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:24.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:24.728 -07 000000409 INF: FPGA: Recv ZSGSRD 29473 17-03-17 23:42:24.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:24.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:24.738 -07 000000433 INF: FPGA: Recv ZSGSRD 29474 17-03-17 23:42:24.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:24.748 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:42:24.748 -07 000000438 INF: FPGA: Recv ZPIEZORD 25686 17-03-17 23:42:24.758 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:24.758 -07 000000610 INF: Z Motor: Piezo is near 34.9 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.322 V. Piezo Error = -8.3 V. 17-03-17 23:42:24.758 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.6 um, Read 10 ADC samples: Avg = 29471 (-128.9 uncal um), Error = 0.8 uncal um, Median = 29470 (-128.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29463 (-128.8 uncal um), Max = 29478 (-128.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um) 17-03-17 23:42:24.758 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29471, posNoise = 7, negNoise = 8 17-03-17 23:42:24.758 -07 000000610 INF: Z Motor: After move to -0.129645, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:42:24.758 -07 000000610 INF: Z Motor: MoveAbsStepped took 320 ms) 17-03-17 23:42:24.758 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:42:24.758 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:42:24.758 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:42:24.758 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:42:24.758 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 23:42:24.758 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 23:42:24.758 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 23:42:24.758 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:42:24.758 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms. 17-03-17 23:42:24.758 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 23:42:24.758 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:42:24.758 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 23:42:24.768 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-17 23:42:24.768 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 23:42:24.768 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-17 23:42:24.768 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 23:42:24.778 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms. 17-03-17 23:42:24.778 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms. 17-03-17 23:42:24.778 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms. 17-03-17 23:42:24.778 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms. 17-03-17 23:42:24.788 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 28497 150\n [Camera] 17-03-17 23:42:24.988 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 23:42:26.018 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229 17-03-17 23:42:26.018 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229 17-03-17 23:42:26.018 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:42:26.028 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229 17-03-17 23:42:26.028 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229 17-03-17 23:42:26.028 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:42:26.028 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:42:26.028 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start. 17-03-17 23:42:26.028 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:42:26.028 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) start. 17-03-17 23:42:26.218 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28497 1422 17-03-17 23:42:26.358 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572 17-03-17 23:42:26.428 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 396 ms. 17-03-17 23:42:26.428 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms. 17-03-17 23:42:26.428 -07 000000502 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:42:26.428 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) end. Duration was 396 ms. 17-03-17 23:42:26.428 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms. 17-03-17 23:42:26.428 -07 000000561 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:42:26.428 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:42:26.428 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms. 17-03-17 23:42:26.428 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:42:26.438 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms. 17-03-17 23:42:26.868 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072 17-03-17 23:42:26.868 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072 17-03-17 23:42:26.868 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:42:26.868 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072 17-03-17 23:42:26.868 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072 17-03-17 23:42:26.868 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:42:26.868 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:42:26.868 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start. 17-03-17 23:42:26.878 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:42:26.878 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start. 17-03-17 23:42:27.058 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 2265 17-03-17 23:42:27.058 -07 000000482 INF: FPGA: Recv CAMDBLSNAP 17-03-17 23:42:27.058 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 28497 150' command took 2 ms to send, 2262 ms to get response, and 2272 ms overall 17-03-17 23:42:27.058 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-17 23:42:27.058 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.54541015625, Z-Position -0.129651308040972. ------ 17-03-17 23:42:27.058 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:42:27.058 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13645 mm 17-03-17 23:42:27.058 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 23:42:27.068 -07 000000459 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:42:27.068 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall 17-03-17 23:42:27.068 -07 000000475 INF: Z Motor: Entering MoveAbsStepped (DAC = 29808, sync = True, waitForSettling = False) 17-03-17 23:42:27.068 -07 000000475 INF: Z Motor: Moving to -0.136452 mm, started at -0.129651 mm, distance = -6.80 um 17-03-17 23:42:27.068 -07 000000486 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 23:42:27.068 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True) 17-03-17 23:42:27.068 -07 000000576 INF: Y Motor: Moving to 67.3826 mm, started at 66.5454 mm, delta = 0.8372 mm 17-03-17 23:42:27.078 -07 000000475 INF: FPGA: Xmit ZDACW 29808\n [Z Motor] 17-03-17 23:42:27.078 -07 000000623 INF: FPGA: Recv ZDACW 17-03-17 23:42:27.088 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:42:27.088 -07 000000475 INF: FPGA: 'ZDACW 29808' command took 0 ms to send, 0 ms to get response, and 17 ms overall 17-03-17 23:42:27.088 -07 000000433 INF: FPGA: Recv YRDPOS 136285 17-03-17 23:42:27.088 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:42:27.098 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall 17-03-17 23:42:27.098 -07 000000576 INF: Y Motor: Encoder = 136285 = motor step 106472.7 = 66.5454 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:42:27.098 -07 000000576 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 23:42:27.098 -07 000000475 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:42:27.098 -07 000000576 INF: Y Motor: Moving 1340 steps-15 17-03-17 23:42:27.098 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:42:27.098 -07 000000409 INF: FPGA: Recv ZDACR 29808 17-03-17 23:42:27.108 -07 000000475 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-17 23:42:27.108 -07 000000475 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet)) 17-03-17 23:42:27.108 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 23:42:27.268 -07 000000448 INF: FPGA: Recv FOCMRRFOC 17-03-17 23:42:27.268 -07 000000486 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall 17-03-17 23:42:27.268 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 399 ms. 17-03-17 23:42:27.268 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms. 17-03-17 23:42:27.268 -07 000000547 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:42:27.278 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 398 ms. 17-03-17 23:42:27.278 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms. 17-03-17 23:42:27.278 -07 000000438 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:42:27.278 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:42:27.278 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms. 17-03-17 23:42:27.278 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:42:27.288 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms. 17-03-17 23:42:27.478 -07 000000459 INF: FPGA: Recv YMVTILE 17-03-17 23:42:27.478 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall 17-03-17 23:42:27.518 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:42:27.528 -07 000000623 INF: FPGA: Recv YRDPOS 137989 17-03-17 23:42:27.538 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:42:27.538 -07 000000576 INF: Y Motor: Encoder = 137989 = motor step 107803.9 = 67.3774 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:42:27.538 -07 000000576 INF: Y Motor: Position error before settling (table move) = -11 encoder counts (-0.005 mm) 17-03-17 23:42:27.538 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.837 mm, average velocity = 2.163 mm/sec 17-03-17 23:42:28.488 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:42:28.488 -07 000000541 INF: FPGA: Recv YRDPOS 137989 17-03-17 23:42:28.498 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:28.498 -07 000000576 INF: Y Motor: Encoder = 137989 = motor step 107803.9 = 67.3774 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:42:28.508 -07 000000576 INF: Y Motor: After move to 67.382607, error = -0.005165, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 23:42:28.508 -07 000000576 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm) 17-03-17 23:42:28.508 -07 000000576 INF: Y Motor: Moved to 67.3774 after 1444 ms (table move) 17-03-17 23:42:28.518 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136452 mm (DAC = 29808) 17-03-17 23:42:28.518 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:28.518 -07 000000480 INF: FPGA: Recv ZSGSRD 30532 17-03-17 23:42:28.528 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:28.528 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:28.528 -07 000000486 INF: FPGA: Recv ZSGSRD 30532 17-03-17 23:42:28.538 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:28.538 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:28.538 -07 000000576 INF: FPGA: Recv ZSGSRD 30531 17-03-17 23:42:28.548 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:28.548 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:28.548 -07 000000448 INF: FPGA: Recv ZSGSRD 30532 17-03-17 23:42:28.558 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:28.558 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:28.558 -07 000000627 INF: FPGA: Recv ZSGSRD 30534 17-03-17 23:42:28.568 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:28.568 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:28.568 -07 000000486 INF: FPGA: Recv ZSGSRD 30529 17-03-17 23:42:28.578 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:28.578 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:28.578 -07 000000576 INF: FPGA: Recv ZSGSRD 30532 17-03-17 23:42:28.588 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:28.588 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:28.588 -07 000000448 INF: FPGA: Recv ZSGSRD 30528 17-03-17 23:42:28.598 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:28.598 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:28.598 -07 000000480 INF: FPGA: Recv ZSGSRD 30530 17-03-17 23:42:28.608 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:28.608 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:28.608 -07 000000459 INF: FPGA: Recv ZSGSRD 30531 17-03-17 23:42:28.618 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:28.618 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:42:28.618 -07 000000618 INF: FPGA: Recv ZPIEZORD 27141 17-03-17 23:42:28.628 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:28.628 -07 000000561 INF: Z Motor: Piezo is near 38.0 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.548 V. Piezo Error = -7.5 V. 17-03-17 23:42:28.628 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.5 um, Read 10 ADC samples: Avg = 30531 (-135.7 uncal um), Error = 0.8 uncal um, Median = 30532 (-135.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 30528 (-135.6 uncal um), Max = 30534 (-135.7 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um) 17-03-17 23:42:28.628 -07 000000561 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30531, posNoise = 3, negNoise = 3 17-03-17 23:42:28.628 -07 000000561 INF: Z Motor: After move to -0.136452, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:42:28.628 -07 000000561 INF: Z Motor: Settle wait time = 1448 ms, measure time = 110 ms (allowed 150 ms), total time = 1558 ms 17-03-17 23:42:28.628 -07 000000561 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms 17-03-17 23:42:28.668 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1601 ms 17-03-17 23:42:28.668 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 23:42:28.668 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:42:28.668 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:42:28.668 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:42:28.668 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 23:42:28.668 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:42:28.668 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:42:28.668 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms. 17-03-17 23:42:28.668 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 23:42:28.678 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-17 23:42:28.678 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 23:42:28.678 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms. 17-03-17 23:42:28.678 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms. 17-03-17 23:42:28.688 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:42:28.728 -07 000000459 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 23:42:29.028 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-17 23:42:29.028 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-17 23:42:29.028 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 23:42:29.028 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1458343128, 0x0, 559484976) start. 17-03-17 23:42:29.068 -07 000000627 INF: FPGA: Recv @CAMSNAP 380 17-03-17 23:42:29.068 -07 000000576 INF: FPGA: Recv CAMSNAP 17-03-17 23:42:29.068 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall 17-03-17 23:42:29.148 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1458343128, 0x0, 559484976) end. Duration was 117 ms. 17-03-17 23:42:29.148 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:42:29.148 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-17 23:42:29.148 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 120 ms. 17-03-17 23:42:29.168 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:42:29.168 -07 000000448 INF: Autofocus start 17-03-17 23:42:29.168 -07 000000448 INF: MeasureProfile start 17-03-17 23:42:29.178 -07 000000486 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:42:29.178 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-17 23:42:29.178 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 23:42:29.178 -07 000000448 INF: MeasureProfile done 17-03-17 23:42:29.178 -07 000000448 INF: X=0 Z correction [um]=-0.02394831 17-03-17 23:42:29.178 -07 000000448 INF: Autofocus finished 17-03-17 23:42:29.378 -07 000000561 INF: FPGA: Recv FOCMRRIMG 17-03-17 23:42:29.378 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall 17-03-17 23:42:29.378 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.37744140625, Z-position -0.136460972911239. ---------- 17-03-17 23:42:29.388 -07 000000610 INF: Cycle 77 Tile 10 Exposure Settings A 1037 G 500 T 500 C 1037 17-03-17 23:42:29.388 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28315, sync = True, waitForSettling = True) 17-03-17 23:42:29.388 -07 000000610 INF: Z Motor: Moving to -0.129618 mm, started at -0.136461 mm, distance = 6.84 um 17-03-17 23:42:29.388 -07 000000610 INF: FPGA: Xmit ZDACW 28315\n [Z Motor] 17-03-17 23:42:29.388 -07 000000438 INF: FPGA: Recv ZDACW 17-03-17 23:42:29.398 -07 000000610 INF: FPGA: 'ZDACW 28315' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:42:29.398 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:42:29.398 -07 000000448 INF: FPGA: Recv ZDACR 28315 17-03-17 23:42:29.408 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:29.408 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:42:29.558 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:29.558 -07 000000541 INF: FPGA: Recv ZSGSRD 29465 17-03-17 23:42:29.568 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:42:29.568 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:29.568 -07 000000459 INF: FPGA: Recv ZSGSRD 29467 17-03-17 23:42:29.578 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:29.578 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:29.578 -07 000000561 INF: FPGA: Recv ZSGSRD 29471 17-03-17 23:42:29.588 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:29.588 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:29.588 -07 000000486 INF: FPGA: Recv ZSGSRD 29468 17-03-17 23:42:29.598 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:42:29.598 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:29.598 -07 000000480 INF: FPGA: Recv ZSGSRD 29457 17-03-17 23:42:29.608 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:29.608 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:29.608 -07 000000541 INF: FPGA: Recv ZSGSRD 29467 17-03-17 23:42:29.618 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:29.618 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:29.618 -07 000000459 INF: FPGA: Recv ZSGSRD 29469 17-03-17 23:42:29.628 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:29.628 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:29.628 -07 000000409 INF: FPGA: Recv ZSGSRD 29465 17-03-17 23:42:29.638 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:29.638 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:29.638 -07 000000486 INF: FPGA: Recv ZSGSRD 29464 17-03-17 23:42:29.648 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:29.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:29.658 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 3.960826, 17-03-17 23:42:29.658 -07 000000433 INF: FPGA: Recv ZSGSRD 29472 17-03-17 23:42:29.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-17 23:42:29.688 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:42:29.688 -07 000000541 INF: FPGA: Recv ZPIEZORD 25744 17-03-17 23:42:29.698 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-17 23:42:29.698 -07 000000610 INF: Z Motor: Piezo is near 35.0 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.321 V. Piezo Error = -8.2 V. 17-03-17 23:42:29.698 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.6 um, Read 10 ADC samples: Avg = 29466 (-128.8 uncal um), Error = 0.8 uncal um, Median = 29467 (-128.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 29457 (-128.8 uncal um), Max = 29472 (-128.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um) 17-03-17 23:42:29.698 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29466, posNoise = 6, negNoise = 9 17-03-17 23:42:29.698 -07 000000610 INF: Z Motor: After move to -0.129618, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:42:29.698 -07 000000610 INF: Z Motor: MoveAbsStepped took 309 ms) 17-03-17 23:42:29.698 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:42:29.698 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:42:29.698 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:42:29.698 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:42:29.698 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 23:42:29.698 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:42:29.698 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 23:42:29.698 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 23:42:29.698 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:42:29.698 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 23:42:29.698 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-17 23:42:29.698 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 23:42:29.708 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms. 17-03-17 23:42:29.708 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 23:42:29.708 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-17 23:42:29.708 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 23:42:29.718 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms. 17-03-17 23:42:29.718 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms. 17-03-17 23:42:29.718 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms. 17-03-17 23:42:29.718 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms. 17-03-17 23:42:29.728 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 28492 150\n [Camera] 17-03-17 23:42:29.928 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 23:42:30.958 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229 17-03-17 23:42:30.958 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229 17-03-17 23:42:30.958 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:42:30.958 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:42:30.958 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start. 17-03-17 23:42:30.968 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229 17-03-17 23:42:30.968 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229 17-03-17 23:42:30.968 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:42:30.968 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:42:30.968 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start. 17-03-17 23:42:31.158 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28492 1422 17-03-17 23:42:31.298 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572 17-03-17 23:42:31.358 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 395 ms. 17-03-17 23:42:31.358 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms. 17-03-17 23:42:31.358 -07 000000627 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:42:31.358 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:42:31.358 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms. 17-03-17 23:42:31.358 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 398 ms. 17-03-17 23:42:31.358 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms. 17-03-17 23:42:31.368 -07 000000409 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:42:31.368 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:42:31.378 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms. 17-03-17 23:42:31.808 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072 17-03-17 23:42:31.808 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072 17-03-17 23:42:31.808 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:42:31.808 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:42:31.808 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start. 17-03-17 23:42:31.808 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072 17-03-17 23:42:31.808 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072 17-03-17 23:42:31.808 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:42:31.808 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:42:31.808 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start. 17-03-17 23:42:31.998 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 2265 17-03-17 23:42:31.998 -07 000000459 INF: FPGA: Recv CAMDBLSNAP 17-03-17 23:42:31.998 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 28492 150' command took 2 ms to send, 2262 ms to get response, and 2272 ms overall 17-03-17 23:42:31.998 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-17 23:42:31.998 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.37744140625, Z-Position -0.129619186980263. ------ 17-03-17 23:42:32.118 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:42:32.128 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:42:32.128 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:42:32.128 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13643 mm 17-03-17 23:42:32.128 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 23:42:32.128 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True) 17-03-17 23:42:32.128 -07 000000502 INF: Y Motor: Moving to 68.2126 mm, started at 67.3774 mm, delta = 0.8352 mm 17-03-17 23:42:32.128 -07 000000576 INF: Z Motor: Entering MoveAbsStepped (DAC = 29803, sync = True, waitForSettling = False) 17-03-17 23:42:32.128 -07 000000576 INF: Z Motor: Moving to -0.136429 mm, started at -0.129619 mm, distance = -6.81 um 17-03-17 23:42:32.128 -07 000000438 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:42:32.138 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:32.138 -07 000000576 INF: FPGA: Xmit ZDACW 29803\n [Z Motor] 17-03-17 23:42:32.138 -07 000000475 INF: FPGA: Recv ZDACW 17-03-17 23:42:32.148 -07 000000576 INF: FPGA: 'ZDACW 29803' command took 0 ms to send, 0 ms to get response, and 15 ms overall 17-03-17 23:42:32.148 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:42:32.148 -07 000000409 INF: FPGA: Recv YRDPOS 137990 17-03-17 23:42:32.158 -07 000000486 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 23:42:32.158 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall 17-03-17 23:42:32.158 -07 000000502 INF: Y Motor: Encoder = 137990 = motor step 107804.7 = 67.3779 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:42:32.158 -07 000000502 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 23:42:32.158 -07 000000502 INF: Y Motor: Moving 1335 steps-11 17-03-17 23:42:32.168 -07 000000576 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:42:32.168 -07 000000627 INF: FPGA: Recv ZDACR 29803 17-03-17 23:42:32.178 -07 000000576 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-17 23:42:32.178 -07 000000576 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet)) 17-03-17 23:42:32.178 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 23:42:32.208 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 405 ms. 17-03-17 23:42:32.208 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 407 ms. 17-03-17 23:42:32.208 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 405 ms. 17-03-17 23:42:32.208 -07 000000512 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:42:32.208 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 405 ms. 17-03-17 23:42:32.208 -07 000000547 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:42:32.218 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:42:32.218 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms. 17-03-17 23:42:32.218 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 415 ms. 17-03-17 23:42:32.228 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms. 17-03-17 23:42:32.358 -07 000000475 INF: FPGA: Recv FOCMRRFOC 17-03-17 23:42:32.358 -07 000000486 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall 17-03-17 23:42:32.548 -07 000000438 INF: FPGA: Recv YMVTILE 17-03-17 23:42:32.548 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall 17-03-17 23:42:32.588 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:42:32.598 -07 000000627 INF: FPGA: Recv YRDPOS 139697 17-03-17 23:42:32.598 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-17 23:42:32.598 -07 000000502 INF: Y Motor: Encoder = 139697 = motor step 109138.3 = 68.2114 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:42:32.598 -07 000000502 INF: Y Motor: Position error before settling (table move) = -2 encoder counts (-0.001 mm) 17-03-17 23:42:32.598 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.835 mm, average velocity = 2.125 mm/sec 17-03-17 23:42:33.548 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:42:33.548 -07 000000512 INF: FPGA: Recv YRDPOS 139697 17-03-17 23:42:33.558 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:33.558 -07 000000502 INF: Y Motor: Encoder = 139697 = motor step 109138.3 = 68.2114 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:42:33.558 -07 000000502 INF: Y Motor: After move to 68.212608, error = -0.001183, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 23:42:33.558 -07 000000502 INF: Y Motor: Position error after settling (table move) = -2 encoder counts (-0.001 mm), Delta during settling = 0 counts (0.000 mm) 17-03-17 23:42:33.558 -07 000000502 INF: Y Motor: Moved to 68.2114 after 1429 ms (table move) 17-03-17 23:42:33.558 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136429 mm (DAC = 29803) 17-03-17 23:42:33.558 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:33.568 -07 000000433 INF: FPGA: Recv ZSGSRD 30527 17-03-17 23:42:33.568 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 2 ms overall 17-03-17 23:42:33.568 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:33.568 -07 000000623 INF: FPGA: Recv ZSGSRD 30538 17-03-17 23:42:33.578 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:33.578 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:33.578 -07 000000512 INF: FPGA: Recv ZSGSRD 30531 17-03-17 23:42:33.588 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:33.588 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:33.588 -07 000000480 INF: FPGA: Recv ZSGSRD 30520 17-03-17 23:42:33.598 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:33.598 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:33.598 -07 000000486 INF: FPGA: Recv ZSGSRD 30525 17-03-17 23:42:33.608 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:33.608 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:33.608 -07 000000576 INF: FPGA: Recv ZSGSRD 30521 17-03-17 23:42:33.618 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:33.618 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:33.618 -07 000000502 INF: FPGA: Recv ZSGSRD 30527 17-03-17 23:42:33.628 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:33.628 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:33.628 -07 000000475 INF: FPGA: Recv ZSGSRD 30522 17-03-17 23:42:33.638 -07 000000561 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:33.638 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:33.638 -07 000000448 INF: FPGA: Recv ZSGSRD 30528 17-03-17 23:42:33.648 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:33.648 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:33.648 -07 000000512 INF: FPGA: Recv ZSGSRD 30534 17-03-17 23:42:33.658 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:33.658 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:42:33.658 -07 000000547 INF: FPGA: Recv ZPIEZORD 27142 17-03-17 23:42:33.668 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:33.668 -07 000000561 INF: Z Motor: Piezo is near 38.0 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.548 V. Piezo Error = -7.5 V. 17-03-17 23:42:33.668 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.4 um, Read 10 ADC samples: Avg = 30527 (-135.6 uncal um), Error = 0.8 uncal um, Median = 30527 (-135.6 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30520 (-135.6 uncal um), Max = 30538 (-135.7 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um) 17-03-17 23:42:33.668 -07 000000561 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30527, posNoise = 11, negNoise = 7 17-03-17 23:42:33.668 -07 000000561 INF: Z Motor: After move to -0.136429, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:42:33.668 -07 000000561 INF: Z Motor: Settle wait time = 1432 ms, measure time = 104 ms (allowed 150 ms), total time = 1536 ms 17-03-17 23:42:33.668 -07 000000561 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms 17-03-17 23:42:33.718 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1589 ms 17-03-17 23:42:33.718 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 23:42:33.718 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:42:33.718 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:42:33.718 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:42:33.718 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:42:33.718 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 23:42:33.718 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:42:33.718 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-17 23:42:33.718 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 23:42:33.728 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms. 17-03-17 23:42:33.728 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 23:42:33.728 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms. 17-03-17 23:42:33.728 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms. 17-03-17 23:42:33.738 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:42:33.778 -07 000000448 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 23:42:34.078 -07 000000433 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-17 23:42:34.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-17 23:42:34.078 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 23:42:34.078 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 611574712, 0x0, 559484976) start. 17-03-17 23:42:34.118 -07 000000482 INF: FPGA: Recv @CAMSNAP 380 17-03-17 23:42:34.118 -07 000000547 INF: FPGA: Recv CAMSNAP 17-03-17 23:42:34.118 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall 17-03-17 23:42:34.208 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 611574712, 0x0, 559484976) end. Duration was 126 ms. 17-03-17 23:42:34.208 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:42:34.208 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-17 23:42:34.208 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms. 17-03-17 23:42:34.318 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:42:34.318 -07 000000459 INF: Autofocus start 17-03-17 23:42:34.318 -07 000000459 INF: MeasureProfile start 17-03-17 23:42:34.318 -07 000000627 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:42:34.328 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 23:42:34.328 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 23:42:34.328 -07 000000459 INF: MeasureProfile done 17-03-17 23:42:34.328 -07 000000459 INF: X=-80 Z correction [um]=-0.3928285 17-03-17 23:42:34.328 -07 000000459 INF: Autofocus finished 17-03-17 23:42:34.528 -07 000000438 INF: FPGA: Recv FOCMRRIMG 17-03-17 23:42:34.528 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 204 ms overall 17-03-17 23:42:34.528 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.21142578125, Z-position -0.136435276062672. ---------- 17-03-17 23:42:34.528 -07 000000610 INF: Cycle 77 Tile 11 Exposure Settings A 1037 G 500 T 500 C 1037 17-03-17 23:42:34.538 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28230, sync = True, waitForSettling = True) 17-03-17 23:42:34.538 -07 000000610 INF: Z Motor: Moving to -0.129229 mm, started at -0.136435 mm, distance = 7.21 um 17-03-17 23:42:34.538 -07 000000610 INF: FPGA: Xmit ZDACW 28230\n [Z Motor] 17-03-17 23:42:34.538 -07 000000433 INF: FPGA: Recv ZDACW 17-03-17 23:42:34.548 -07 000000610 INF: FPGA: 'ZDACW 28230' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:42:34.548 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:42:34.548 -07 000000512 INF: FPGA: Recv ZDACR 28230 17-03-17 23:42:34.558 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 11 ms overall 17-03-17 23:42:34.558 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:42:34.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:34.708 -07 000000618 INF: FPGA: Recv ZSGSRD 29408 17-03-17 23:42:34.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:42:34.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:34.728 -07 000000627 INF: FPGA: Recv ZSGSRD 29404 17-03-17 23:42:34.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-17 23:42:34.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:34.738 -07 000000482 INF: FPGA: Recv ZSGSRD 29407 17-03-17 23:42:34.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:34.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:34.748 -07 000000618 INF: FPGA: Recv ZSGSRD 29405 17-03-17 23:42:34.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:34.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:34.758 -07 000000576 INF: FPGA: Recv ZSGSRD 29412 17-03-17 23:42:34.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:34.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:34.768 -07 000000480 INF: FPGA: Recv ZSGSRD 29407 17-03-17 23:42:34.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:34.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:34.778 -07 000000627 INF: FPGA: Recv ZSGSRD 29410 17-03-17 23:42:34.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:34.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:34.788 -07 000000482 INF: FPGA: Recv ZSGSRD 29398 17-03-17 23:42:34.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:34.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:34.798 -07 000000433 INF: FPGA: Recv ZSGSRD 29401 17-03-17 23:42:34.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:34.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:34.808 -07 000000448 INF: FPGA: Recv ZSGSRD 29406 17-03-17 23:42:34.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:34.818 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:42:34.818 -07 000000480 INF: FPGA: Recv ZPIEZORD 25634 17-03-17 23:42:34.828 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:34.828 -07 000000610 INF: Z Motor: Piezo is near 34.8 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.308 V. Piezo Error = -8.3 V. 17-03-17 23:42:34.828 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.2 um, Read 10 ADC samples: Avg = 29406 (-128.5 uncal um), Error = 0.8 uncal um, Median = 29406 (-128.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29398 (-128.4 uncal um), Max = 29412 (-128.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um) 17-03-17 23:42:34.828 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29406, posNoise = 6, negNoise = 8 17-03-17 23:42:34.828 -07 000000610 INF: Z Motor: After move to -0.129229, error = -0.000005, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:42:34.828 -07 000000610 INF: Z Motor: MoveAbsStepped took 289 ms) 17-03-17 23:42:34.828 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:42:34.828 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:42:34.828 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:42:34.828 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:42:34.828 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 23:42:34.828 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:42:34.828 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:42:34.828 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 23:42:34.828 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 23:42:34.828 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 23:42:34.828 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-17 23:42:34.838 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 23:42:34.838 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms. 17-03-17 23:42:34.838 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 23:42:34.838 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms. 17-03-17 23:42:34.838 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 23:42:34.848 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms. 17-03-17 23:42:34.848 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms. 17-03-17 23:42:34.848 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms. 17-03-17 23:42:34.848 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms. 17-03-17 23:42:34.858 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 28406 150\n [Camera] 17-03-17 23:42:35.038 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 3.970374, 17-03-17 23:42:35.058 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 23:42:36.088 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229 17-03-17 23:42:36.088 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229 17-03-17 23:42:36.088 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:42:36.098 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229 17-03-17 23:42:36.098 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229 17-03-17 23:42:36.098 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:42:36.098 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:42:36.098 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start. 17-03-17 23:42:36.098 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:42:36.098 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start. 17-03-17 23:42:36.288 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28406 1422 17-03-17 23:42:36.438 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572 17-03-17 23:42:36.488 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 395 ms. 17-03-17 23:42:36.488 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms. 17-03-17 23:42:36.488 -07 000000409 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:42:36.498 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 396 ms. 17-03-17 23:42:36.498 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms. 17-03-17 23:42:36.498 -07 000000618 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:42:36.498 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:42:36.498 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms. 17-03-17 23:42:36.498 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:42:36.508 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms. 17-03-17 23:42:36.938 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072 17-03-17 23:42:36.938 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072 17-03-17 23:42:36.938 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:42:36.938 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072 17-03-17 23:42:36.938 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072 17-03-17 23:42:36.938 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:42:36.948 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:42:36.948 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start. 17-03-17 23:42:36.948 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:42:36.948 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start. 17-03-17 23:42:37.088 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:42:37.098 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:42:37.128 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP 2265 17-03-17 23:42:37.128 -07 000000561 INF: FPGA: Recv CAMDBLSNAP 17-03-17 23:42:37.128 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 28406 150' command took 2 ms to send, 2265 ms to get response, and 2274 ms overall 17-03-17 23:42:37.128 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-17 23:42:37.128 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.21142578125, Z-Position -0.129233734251758. ------ 17-03-17 23:42:37.138 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:42:37.138 -07 000000541 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13604 mm 17-03-17 23:42:37.138 -07 000000541 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 23:42:37.248 -07 000000438 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:42:37.248 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 118 ms overall 17-03-17 23:42:37.248 -07 000000433 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 23:42:37.248 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 29717, sync = True, waitForSettling = False) 17-03-17 23:42:37.248 -07 000000486 INF: Z Motor: Moving to -0.136036 mm, started at -0.129234 mm, distance = -6.80 um 17-03-17 23:42:37.248 -07 000000576 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True) 17-03-17 23:42:37.248 -07 000000576 INF: Y Motor: Moving to 69.0426 mm, started at 68.2114 mm, delta = 0.8312 mm 17-03-17 23:42:37.258 -07 000000486 INF: FPGA: Xmit ZDACW 29717\n [Z Motor] 17-03-17 23:42:37.258 -07 000000480 INF: FPGA: Recv ZDACW 17-03-17 23:42:37.268 -07 000000486 INF: FPGA: 'ZDACW 29717' command took 0 ms to send, 0 ms to get response, and 11 ms overall 17-03-17 23:42:37.268 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:42:37.268 -07 000000438 INF: FPGA: Recv YRDPOS 139697 17-03-17 23:42:37.278 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 20 ms overall 17-03-17 23:42:37.278 -07 000000576 INF: Y Motor: Encoder = 139697 = motor step 109138.3 = 68.2114 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:42:37.278 -07 000000576 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 23:42:37.278 -07 000000576 INF: Y Motor: Moving 1330 steps-2 17-03-17 23:42:37.278 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:42:37.278 -07 000000512 INF: FPGA: Recv ZDACR 29717 17-03-17 23:42:37.288 -07 000000486 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall 17-03-17 23:42:37.288 -07 000000486 INF: Z Motor: MoveAbsStepped took 31 ms (did NOT wait for settling yet)) 17-03-17 23:42:37.288 -07 000000576 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 23:42:37.338 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 386 ms. 17-03-17 23:42:37.338 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 387 ms. 17-03-17 23:42:37.338 -07 000000482 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:42:37.338 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 390 ms. 17-03-17 23:42:37.338 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms. 17-03-17 23:42:37.338 -07 000000547 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:42:37.338 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:42:37.338 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:42:37.338 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms. 17-03-17 23:42:37.348 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms. 17-03-17 23:42:37.458 -07 000000448 INF: FPGA: Recv FOCMRRFOC 17-03-17 23:42:37.458 -07 000000433 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 201 ms to get response, and 202 ms overall 17-03-17 23:42:37.658 -07 000000561 INF: FPGA: Recv YMVTILE 17-03-17 23:42:37.658 -07 000000576 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall 17-03-17 23:42:37.698 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:42:37.698 -07 000000627 INF: FPGA: Recv YRDPOS 141380 17-03-17 23:42:37.708 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:42:37.708 -07 000000576 INF: Y Motor: Encoder = 141380 = motor step 110453.1 = 69.0332 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:42:37.708 -07 000000576 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm) 17-03-17 23:42:37.708 -07 000000576 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.831 mm, average velocity = 2.142 mm/sec 17-03-17 23:42:38.658 -07 000000576 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:42:38.658 -07 000000475 INF: FPGA: Recv YRDPOS 141380 17-03-17 23:42:38.668 -07 000000576 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:42:38.668 -07 000000576 INF: Y Motor: Encoder = 141380 = motor step 110453.1 = 69.0332 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:42:38.688 -07 000000576 INF: Y Motor: After move to 69.042610, error = -0.009407, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 23:42:38.688 -07 000000576 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm) 17-03-17 23:42:38.688 -07 000000576 INF: Y Motor: Moved to 69.0332 after 1437 ms (table move) 17-03-17 23:42:38.698 -07 000000541 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136036 mm (DAC = 29717) 17-03-17 23:42:38.698 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:38.698 -07 000000459 INF: FPGA: Recv ZSGSRD 30471 17-03-17 23:42:38.708 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:38.708 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:38.708 -07 000000475 INF: FPGA: Recv ZSGSRD 30463 17-03-17 23:42:38.718 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:38.718 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:38.718 -07 000000448 INF: FPGA: Recv ZSGSRD 30468 17-03-17 23:42:38.728 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:38.728 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:38.728 -07 000000482 INF: FPGA: Recv ZSGSRD 30456 17-03-17 23:42:38.738 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:38.738 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:38.738 -07 000000618 INF: FPGA: Recv ZSGSRD 30465 17-03-17 23:42:38.748 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:38.748 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:38.748 -07 000000623 INF: FPGA: Recv ZSGSRD 30470 17-03-17 23:42:38.758 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:38.758 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:38.758 -07 000000438 INF: FPGA: Recv ZSGSRD 30461 17-03-17 23:42:38.768 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:38.768 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:38.768 -07 000000512 INF: FPGA: Recv ZSGSRD 30465 17-03-17 23:42:38.778 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:38.778 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:38.778 -07 000000448 INF: FPGA: Recv ZSGSRD 30467 17-03-17 23:42:38.788 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:38.788 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:38.788 -07 000000623 INF: FPGA: Recv ZSGSRD 30471 17-03-17 23:42:38.798 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:38.798 -07 000000541 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:42:38.798 -07 000000409 INF: FPGA: Recv ZPIEZORD 27036 17-03-17 23:42:38.808 -07 000000541 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:38.808 -07 000000541 INF: Z Motor: Piezo is near 37.8 V (nominally 0 to 100 V), expect near 45.3 V, since DAC is at 4.535 V. Piezo Error = -7.6 V. 17-03-17 23:42:38.808 -07 000000541 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.0 um, Read 10 ADC samples: Avg = 30466 (-135.3 uncal um), Error = 0.8 uncal um, Median = 30466 (-135.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30456 (-135.2 uncal um), Max = 30471 (-135.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 10 (0.1 uncal um) 17-03-17 23:42:38.808 -07 000000541 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30466, posNoise = 5, negNoise = 10 17-03-17 23:42:38.808 -07 000000541 INF: Z Motor: After move to -0.136036, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:42:38.808 -07 000000541 INF: Z Motor: Settle wait time = 1441 ms, measure time = 110 ms (allowed 150 ms), total time = 1551 ms 17-03-17 23:42:38.808 -07 000000541 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms 17-03-17 23:42:38.848 -07 000000541 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1709 ms 17-03-17 23:42:38.848 -07 000000541 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 23:42:38.848 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:42:38.848 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:42:38.848 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:42:38.848 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:42:38.848 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 23:42:38.848 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:42:38.858 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-17 23:42:38.858 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 23:42:38.858 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-17 23:42:38.858 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 23:42:38.868 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms. 17-03-17 23:42:38.868 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms. 17-03-17 23:42:38.868 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:42:38.908 -07 000000547 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 23:42:39.208 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-17 23:42:39.208 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-17 23:42:39.208 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 23:42:39.218 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 611574712, 0x0, 559484976) start. 17-03-17 23:42:39.248 -07 000000409 INF: FPGA: Recv @CAMSNAP 380 17-03-17 23:42:39.248 -07 000000486 INF: FPGA: Recv CAMSNAP 17-03-17 23:42:39.248 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall 17-03-17 23:42:39.338 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 611574712, 0x0, 559484976) end. Duration was 127 ms. 17-03-17 23:42:39.338 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:42:39.338 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-17 23:42:39.338 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms. 17-03-17 23:42:39.448 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:42:39.448 -07 000000618 INF: Autofocus start 17-03-17 23:42:39.448 -07 000000618 INF: MeasureProfile start 17-03-17 23:42:39.448 -07 000000482 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:42:39.458 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 23:42:39.458 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 23:42:39.458 -07 000000618 INF: MeasureProfile done 17-03-17 23:42:39.458 -07 000000618 INF: X=-16 Z correction [um]=-0.08128808 17-03-17 23:42:39.458 -07 000000618 INF: Autofocus finished 17-03-17 23:42:39.658 -07 000000623 INF: FPGA: Recv FOCMRRIMG 17-03-17 23:42:39.658 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 23:42:39.658 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.033203125, Z-position -0.136043399122024. ---------- 17-03-17 23:42:39.658 -07 000000610 INF: Cycle 77 Tile 12 Exposure Settings A 1037 G 500 T 500 C 1037 17-03-17 23:42:39.658 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28212, sync = True, waitForSettling = True) 17-03-17 23:42:39.658 -07 000000610 INF: Z Motor: Moving to -0.129146 mm, started at -0.136043 mm, distance = 6.90 um 17-03-17 23:42:39.668 -07 000000610 INF: FPGA: Xmit ZDACW 28212\n [Z Motor] 17-03-17 23:42:39.668 -07 000000438 INF: FPGA: Recv ZDACW 17-03-17 23:42:39.678 -07 000000610 INF: FPGA: 'ZDACW 28212' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:42:39.678 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:42:39.678 -07 000000618 INF: FPGA: Recv ZDACR 28212 17-03-17 23:42:39.688 -07 000000610 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:39.688 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:42:39.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:39.838 -07 000000482 INF: FPGA: Recv ZSGSRD 29398 17-03-17 23:42:39.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:42:39.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:39.848 -07 000000409 INF: FPGA: Recv ZSGSRD 29386 17-03-17 23:42:39.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:39.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:39.858 -07 000000438 INF: FPGA: Recv ZSGSRD 29394 17-03-17 23:42:39.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:39.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:39.868 -07 000000502 INF: FPGA: Recv ZSGSRD 29390 17-03-17 23:42:39.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:39.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:39.878 -07 000000459 INF: FPGA: Recv ZSGSRD 29402 17-03-17 23:42:39.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:39.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:39.888 -07 000000482 INF: FPGA: Recv ZSGSRD 29394 17-03-17 23:42:39.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:39.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:39.898 -07 000000541 INF: FPGA: Recv ZSGSRD 29389 17-03-17 23:42:39.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:39.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:39.908 -07 000000576 INF: FPGA: Recv ZSGSRD 29394 17-03-17 23:42:39.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:39.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:39.918 -07 000000502 INF: FPGA: Recv ZSGSRD 29389 17-03-17 23:42:39.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:39.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:39.928 -07 000000618 INF: FPGA: Recv ZSGSRD 29392 17-03-17 23:42:39.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:39.938 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:42:39.938 -07 000000623 INF: FPGA: Recv ZPIEZORD 25607 17-03-17 23:42:39.948 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:39.948 -07 000000610 INF: Z Motor: Piezo is near 34.7 V (nominally 0 to 100 V), expect near 43.0 V, since DAC is at 4.305 V. Piezo Error = -8.3 V. 17-03-17 23:42:39.948 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.1 um, Read 10 ADC samples: Avg = 29393 (-128.4 uncal um), Error = 0.8 uncal um, Median = 29393 (-128.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29386 (-128.3 uncal um), Max = 29402 (-128.4 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um) 17-03-17 23:42:39.948 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29393, posNoise = 9, negNoise = 7 17-03-17 23:42:39.948 -07 000000610 INF: Z Motor: After move to -0.129146, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:42:39.948 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms) 17-03-17 23:42:39.948 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:42:39.948 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:42:39.948 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:42:39.948 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:42:39.948 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 23:42:39.948 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 23:42:39.948 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 23:42:39.948 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:42:39.948 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-17 23:42:39.948 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 23:42:39.948 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:42:39.948 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 23:42:39.958 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-17 23:42:39.958 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 23:42:39.958 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-17 23:42:39.958 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 23:42:39.968 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms. 17-03-17 23:42:39.968 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms. 17-03-17 23:42:39.968 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms. 17-03-17 23:42:39.968 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms. 17-03-17 23:42:39.968 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 28388 150\n [Camera] 17-03-17 23:42:40.168 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 23:42:40.398 -07 000000409 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 3.981281, 17-03-17 23:42:41.208 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229 17-03-17 23:42:41.208 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229 17-03-17 23:42:41.208 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:42:41.208 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229 17-03-17 23:42:41.208 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229 17-03-17 23:42:41.218 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:42:41.218 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:42:41.218 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start. 17-03-17 23:42:41.218 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:42:41.218 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start. 17-03-17 23:42:41.398 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28388 1422 17-03-17 23:42:41.548 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572 17-03-17 23:42:41.608 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 396 ms. 17-03-17 23:42:41.608 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms. 17-03-17 23:42:41.608 -07 000000502 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:42:41.618 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 396 ms. 17-03-17 23:42:41.618 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms. 17-03-17 23:42:41.618 -07 000000438 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:42:41.618 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:42:41.618 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms. 17-03-17 23:42:41.618 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:42:41.628 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms. 17-03-17 23:42:42.048 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072 17-03-17 23:42:42.048 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072 17-03-17 23:42:42.048 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:42:42.048 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:42:42.058 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start. 17-03-17 23:42:42.058 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072 17-03-17 23:42:42.058 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072 17-03-17 23:42:42.058 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:42:42.058 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:42:42.058 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) start. 17-03-17 23:42:42.098 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:42:42.098 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:42:42.238 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP 2264 17-03-17 23:42:42.248 -07 000000623 INF: FPGA: Recv CAMDBLSNAP 17-03-17 23:42:42.248 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 28388 150' command took 2 ms to send, 2260 ms to get response, and 2272 ms overall 17-03-17 23:42:42.248 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-17 23:42:42.248 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.033203125, Z-Position -0.129150219493915. ------ 17-03-17 23:42:42.248 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:42:42.248 -07 000000512 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13595 mm 17-03-17 23:42:42.248 -07 000000512 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 23:42:42.248 -07 000000502 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True) 17-03-17 23:42:42.248 -07 000000502 INF: Y Motor: Moving to 69.8726 mm, started at 69.0332 mm, delta = 0.8394 mm 17-03-17 23:42:42.258 -07 000000448 INF: Z Motor: Entering MoveAbsStepped (DAC = 29699, sync = True, waitForSettling = False) 17-03-17 23:42:42.258 -07 000000448 INF: Z Motor: Moving to -0.135953 mm, started at -0.129150 mm, distance = -6.80 um 17-03-17 23:42:42.258 -07 000000459 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:42:42.258 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 23:42:42.258 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:42:42.258 -07 000000547 INF: FPGA: Recv YRDPOS 141380 17-03-17 23:42:42.268 -07 000000448 INF: FPGA: Xmit ZDACW 29699\n [Z Motor] 17-03-17 23:42:42.268 -07 000000502 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 11 ms overall 17-03-17 23:42:42.268 -07 000000502 INF: Y Motor: Encoder = 141380 = motor step 110453.1 = 69.0332 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:42:42.268 -07 000000502 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 23:42:42.268 -07 000000502 INF: Y Motor: Moving 1343 steps-19 17-03-17 23:42:42.268 -07 000000480 INF: FPGA: Recv ZDACW 17-03-17 23:42:42.278 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 23:42:42.278 -07 000000448 INF: FPGA: 'ZDACW 29699' command took 0 ms to send, 0 ms to get response, and 18 ms overall 17-03-17 23:42:42.288 -07 000000502 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 23:42:42.298 -07 000000448 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:42:42.298 -07 000000627 INF: FPGA: Recv ZDACR 29699 17-03-17 23:42:42.308 -07 000000448 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-17 23:42:42.308 -07 000000448 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet)) 17-03-17 23:42:42.458 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 402 ms. 17-03-17 23:42:42.458 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms. 17-03-17 23:42:42.458 -07 000000486 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:42:42.458 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) end. Duration was 401 ms. 17-03-17 23:42:42.458 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms. 17-03-17 23:42:42.458 -07 000000561 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:42:42.458 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:42:42.468 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms. 17-03-17 23:42:42.468 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms. 17-03-17 23:42:42.468 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms. 17-03-17 23:42:42.478 -07 000000433 INF: FPGA: Recv FOCMRRFOC 17-03-17 23:42:42.478 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall 17-03-17 23:42:42.658 -07 000000541 INF: FPGA: Recv YMVTILE 17-03-17 23:42:42.658 -07 000000502 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall 17-03-17 23:42:42.698 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:42:42.708 -07 000000618 INF: FPGA: Recv YRDPOS 143092 17-03-17 23:42:42.718 -07 000000502 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:42:42.718 -07 000000502 INF: Y Motor: Encoder = 143092 = motor step 111790.6 = 69.8691 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:42:42.718 -07 000000502 INF: Y Motor: Position error before settling (table move) = -7 encoder counts (-0.003 mm) 17-03-17 23:42:42.718 -07 000000502 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.839 mm, average velocity = 2.114 mm/sec 17-03-17 23:42:43.668 -07 000000502 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:42:43.668 -07 000000541 INF: FPGA: Recv YRDPOS 143093 17-03-17 23:42:43.678 -07 000000502 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:42:43.678 -07 000000502 INF: Y Motor: Encoder = 143093 = motor step 111791.4 = 69.8696 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:42:43.678 -07 000000502 INF: Y Motor: After move to 69.872612, error = -0.002983, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 23:42:43.678 -07 000000502 INF: Y Motor: Position error after settling (table move) = -6 encoder counts (-0.003 mm), Delta during settling = 1 counts (0.000 mm) 17-03-17 23:42:43.678 -07 000000502 INF: Y Motor: Moved to 69.8696 after 1428 ms (table move) 17-03-17 23:42:43.678 -07 000000512 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135953 mm (DAC = 29699) 17-03-17 23:42:43.678 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:43.688 -07 000000433 INF: FPGA: Recv ZSGSRD 30459 17-03-17 23:42:43.688 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall 17-03-17 23:42:43.688 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:43.688 -07 000000623 INF: FPGA: Recv ZSGSRD 30449 17-03-17 23:42:43.698 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:42:43.698 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:43.698 -07 000000576 INF: FPGA: Recv ZSGSRD 30461 17-03-17 23:42:43.708 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:43.708 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:43.708 -07 000000547 INF: FPGA: Recv ZSGSRD 30456 17-03-17 23:42:43.718 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:43.718 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:43.718 -07 000000627 INF: FPGA: Recv ZSGSRD 30451 17-03-17 23:42:43.728 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:43.728 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:43.728 -07 000000433 INF: FPGA: Recv ZSGSRD 30450 17-03-17 23:42:43.738 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:43.738 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:43.738 -07 000000623 INF: FPGA: Recv ZSGSRD 30451 17-03-17 23:42:43.748 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:43.748 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:43.748 -07 000000618 INF: FPGA: Recv ZSGSRD 30453 17-03-17 23:42:43.758 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:43.758 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:43.758 -07 000000486 INF: FPGA: Recv ZSGSRD 30455 17-03-17 23:42:43.768 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:43.768 -07 000000512 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:43.768 -07 000000409 INF: FPGA: Recv ZSGSRD 30453 17-03-17 23:42:43.778 -07 000000512 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:43.778 -07 000000512 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:42:43.778 -07 000000547 INF: FPGA: Recv ZPIEZORD 26992 17-03-17 23:42:43.788 -07 000000512 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:43.788 -07 000000512 INF: Z Motor: Piezo is near 37.7 V (nominally 0 to 100 V), expect near 45.3 V, since DAC is at 4.532 V. Piezo Error = -7.7 V. 17-03-17 23:42:43.788 -07 000000512 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.0 um, Read 10 ADC samples: Avg = 30454 (-135.2 uncal um), Error = 0.8 uncal um, Median = 30453 (-135.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30449 (-135.1 uncal um), Max = 30461 (-135.2 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-17 23:42:43.788 -07 000000512 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30454, posNoise = 7, negNoise = 5 17-03-17 23:42:43.788 -07 000000512 INF: Z Motor: After move to -0.135953, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:42:43.788 -07 000000512 INF: Z Motor: Settle wait time = 1428 ms, measure time = 101 ms (allowed 150 ms), total time = 1529 ms 17-03-17 23:42:43.788 -07 000000512 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms 17-03-17 23:42:43.838 -07 000000512 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1584 ms 17-03-17 23:42:43.838 -07 000000512 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 23:42:43.838 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:42:43.838 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:42:43.838 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:42:43.838 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 23:42:43.838 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:42:43.838 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:42:43.838 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:42:43.838 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 23:42:43.848 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-17 23:42:43.848 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 23:42:43.848 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms. 17-03-17 23:42:43.848 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms. 17-03-17 23:42:43.858 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:42:43.898 -07 000000438 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 23:42:44.198 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-17 23:42:44.198 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-17 23:42:44.198 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 23:42:44.198 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1441468064, 0x0, 559484976) start. 17-03-17 23:42:44.238 -07 000000623 INF: FPGA: Recv @CAMSNAP 380 17-03-17 23:42:44.238 -07 000000576 INF: FPGA: Recv CAMSNAP 17-03-17 23:42:44.238 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 385 ms overall 17-03-17 23:42:44.328 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1441468064, 0x0, 559484976) end. Duration was 127 ms. 17-03-17 23:42:44.328 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:42:44.328 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms. 17-03-17 23:42:44.328 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms. 17-03-17 23:42:44.438 -07 000000627 INF: Autofocus start 17-03-17 23:42:44.438 -07 000000627 INF: MeasureProfile start 17-03-17 23:42:44.438 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:42:44.438 -07 000000623 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:42:44.448 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 23:42:44.448 -07 000000541 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 23:42:44.448 -07 000000627 INF: MeasureProfile done 17-03-17 23:42:44.448 -07 000000627 INF: X=-96 Z correction [um]=-0.4707136 17-03-17 23:42:44.448 -07 000000627 INF: Autofocus finished 17-03-17 23:42:44.648 -07 000000459 INF: FPGA: Recv FOCMRRIMG 17-03-17 23:42:44.648 -07 000000541 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 23:42:44.648 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86962890625, Z-position -0.135966308576323. ---------- 17-03-17 23:42:44.648 -07 000000610 INF: Cycle 77 Tile 13 Exposure Settings A 1037 G 500 T 500 C 1037 17-03-17 23:42:44.648 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28109, sync = True, waitForSettling = True) 17-03-17 23:42:44.658 -07 000000610 INF: Z Motor: Moving to -0.128675 mm, started at -0.135966 mm, distance = 7.29 um 17-03-17 23:42:44.658 -07 000000610 INF: FPGA: Xmit ZDACW 28109\n [Z Motor] 17-03-17 23:42:44.658 -07 000000547 INF: FPGA: Recv ZDACW 17-03-17 23:42:44.668 -07 000000610 INF: FPGA: 'ZDACW 28109' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:44.668 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:42:44.668 -07 000000541 INF: FPGA: Recv ZDACR 28109 17-03-17 23:42:44.678 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:44.678 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:42:44.828 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:44.828 -07 000000480 INF: FPGA: Recv ZSGSRD 29319 17-03-17 23:42:44.838 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:42:44.838 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:44.838 -07 000000459 INF: FPGA: Recv ZSGSRD 29325 17-03-17 23:42:44.848 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:44.848 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:44.848 -07 000000627 INF: FPGA: Recv ZSGSRD 29323 17-03-17 23:42:44.858 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:44.858 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:44.858 -07 000000576 INF: FPGA: Recv ZSGSRD 29316 17-03-17 23:42:44.868 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:44.868 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:44.868 -07 000000561 INF: FPGA: Recv ZSGSRD 29319 17-03-17 23:42:44.878 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:44.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:44.878 -07 000000502 INF: FPGA: Recv ZSGSRD 29319 17-03-17 23:42:44.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:44.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:44.888 -07 000000623 INF: FPGA: Recv ZSGSRD 29319 17-03-17 23:42:44.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:44.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:44.898 -07 000000541 INF: FPGA: Recv ZSGSRD 29319 17-03-17 23:42:44.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:44.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:44.908 -07 000000576 INF: FPGA: Recv ZSGSRD 29316 17-03-17 23:42:44.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:44.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:44.918 -07 000000512 INF: FPGA: Recv ZSGSRD 29320 17-03-17 23:42:44.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:44.928 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:42:44.928 -07 000000502 INF: FPGA: Recv ZPIEZORD 25520 17-03-17 23:42:44.938 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:44.938 -07 000000610 INF: Z Motor: Piezo is near 34.5 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.289 V. Piezo Error = -8.4 V. 17-03-17 23:42:44.938 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.7 um, Read 10 ADC samples: Avg = 29320 (-127.9 uncal um), Error = 0.8 uncal um, Median = 29319 (-127.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29316 (-127.9 uncal um), Max = 29325 (-127.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um) 17-03-17 23:42:44.938 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29320, posNoise = 5, negNoise = 4 17-03-17 23:42:44.938 -07 000000610 INF: Z Motor: After move to -0.128675, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:42:44.938 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms) 17-03-17 23:42:44.938 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:42:44.938 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:42:44.938 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:42:44.938 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:42:44.938 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 23:42:44.938 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 23:42:44.938 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 23:42:44.938 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:42:44.938 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-17 23:42:44.938 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 23:42:44.938 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:42:44.938 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 23:42:44.938 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-17 23:42:44.948 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-17 23:42:44.948 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 23:42:44.948 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 23:42:44.958 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 17 ms. 17-03-17 23:42:44.958 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms. 17-03-17 23:42:44.958 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 17 ms. 17-03-17 23:42:44.958 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 24 ms. 17-03-17 23:42:44.968 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 28286 150\n [Camera] 17-03-17 23:42:45.168 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 23:42:45.758 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 3.988112, 17-03-17 23:42:46.198 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229 17-03-17 23:42:46.198 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229 17-03-17 23:42:46.198 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:42:46.198 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:42:46.208 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1460549448, 0x0, 391868352) start. 17-03-17 23:42:46.208 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229 17-03-17 23:42:46.208 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229 17-03-17 23:42:46.208 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:42:46.208 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:42:46.208 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) start. 17-03-17 23:42:46.398 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28286 1422 17-03-17 23:42:46.548 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572 17-03-17 23:42:46.588 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) end. Duration was 379 ms. 17-03-17 23:42:46.588 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms. 17-03-17 23:42:46.588 -07 000000486 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:42:46.588 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1460549448, 0x0, 391868352) end. Duration was 385 ms. 17-03-17 23:42:46.588 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 385 ms. 17-03-17 23:42:46.588 -07 000000541 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:42:46.588 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:42:46.588 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:42:46.588 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms. 17-03-17 23:42:46.598 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 391 ms. 17-03-17 23:42:47.048 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072 17-03-17 23:42:47.048 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072 17-03-17 23:42:47.048 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:42:47.048 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:42:47.048 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) start. 17-03-17 23:42:47.048 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072 17-03-17 23:42:47.048 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072 17-03-17 23:42:47.048 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:42:47.048 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:42:47.048 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start. 17-03-17 23:42:47.098 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:42:47.098 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:42:47.238 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 2264 17-03-17 23:42:47.238 -07 000000627 INF: FPGA: Recv CAMDBLSNAP 17-03-17 23:42:47.238 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 28286 150' command took 2 ms to send, 2263 ms to get response, and 2272 ms overall 17-03-17 23:42:47.238 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-17 23:42:47.238 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86962890625, Z-Position -0.128681252007566. ------ 17-03-17 23:42:47.238 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:42:47.238 -07 000000547 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13548 mm 17-03-17 23:42:47.238 -07 000000547 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 23:42:47.248 -07 000000482 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:42:47.248 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall 17-03-17 23:42:47.248 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True) 17-03-17 23:42:47.248 -07 000000475 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 23:42:47.248 -07 000000618 INF: Y Motor: Moving to 70.7026 mm, started at 69.8696 mm, delta = 0.8330 mm 17-03-17 23:42:47.248 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 29596, sync = True, waitForSettling = False) 17-03-17 23:42:47.368 -07 000000486 INF: Z Motor: Moving to -0.135482 mm, started at -0.128681 mm, distance = -6.80 um 17-03-17 23:42:47.368 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:42:47.368 -07 000000576 INF: FPGA: Recv YRDPOS 143093 17-03-17 23:42:47.378 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 127 ms overall 17-03-17 23:42:47.378 -07 000000618 INF: Y Motor: Encoder = 143093 = motor step 111791.4 = 69.8696 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:42:47.378 -07 000000618 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 23:42:47.378 -07 000000618 INF: Y Motor: Moving 1333 steps-7 17-03-17 23:42:47.378 -07 000000486 INF: FPGA: Xmit ZDACW 29596\n [Z Motor] 17-03-17 23:42:47.378 -07 000000512 INF: FPGA: Recv ZDACW 17-03-17 23:42:47.388 -07 000000486 INF: FPGA: 'ZDACW 29596' command took 1 ms to send, 0 ms to get response, and 14 ms overall 17-03-17 23:42:47.388 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:42:47.388 -07 000000438 INF: FPGA: Recv ZDACR 29596 17-03-17 23:42:47.398 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 23:42:47.398 -07 000000486 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:47.398 -07 000000486 INF: Z Motor: MoveAbsStepped took 25 ms (did NOT wait for settling yet)) 17-03-17 23:42:47.448 -07 000000480 INF: FPGA: Recv FOCMRRFOC 17-03-17 23:42:47.448 -07 000000475 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 79 ms to get response, and 202 ms overall 17-03-17 23:42:47.458 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 404 ms. 17-03-17 23:42:47.458 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 405 ms. 17-03-17 23:42:47.458 -07 000000409 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:42:47.458 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2235207384, 0x0, 391868352) end. Duration was 407 ms. 17-03-17 23:42:47.458 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 407 ms. 17-03-17 23:42:47.458 -07 000000623 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:42:47.458 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:42:47.458 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms. 17-03-17 23:42:47.458 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 415 ms. 17-03-17 23:42:47.468 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms. 17-03-17 23:42:47.768 -07 000000541 INF: FPGA: Recv YMVTILE 17-03-17 23:42:47.768 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall 17-03-17 23:42:47.808 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:42:47.808 -07 000000576 INF: FPGA: Recv YRDPOS 144781 17-03-17 23:42:47.818 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 23:42:47.818 -07 000000618 INF: Y Motor: Encoder = 144781 = motor step 113110.2 = 70.6938 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:42:47.818 -07 000000618 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm) 17-03-17 23:42:47.818 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.833 mm, average velocity = 2.098 mm/sec 17-03-17 23:42:48.768 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:42:48.768 -07 000000623 INF: FPGA: Recv YRDPOS 144781 17-03-17 23:42:48.778 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:42:48.778 -07 000000618 INF: Y Motor: Encoder = 144781 = motor step 113110.2 = 70.6938 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:42:48.798 -07 000000618 INF: Y Motor: After move to 70.702606, error = -0.008759, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 23:42:48.798 -07 000000618 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm) 17-03-17 23:42:48.798 -07 000000618 INF: Y Motor: Moved to 70.6938 after 1555 ms (table move) 17-03-17 23:42:48.808 -07 000000547 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135482 mm (DAC = 29596) 17-03-17 23:42:48.808 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:48.808 -07 000000433 INF: FPGA: Recv ZSGSRD 30382 17-03-17 23:42:48.818 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:42:48.818 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:48.818 -07 000000438 INF: FPGA: Recv ZSGSRD 30381 17-03-17 23:42:48.828 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:48.828 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:48.828 -07 000000618 INF: FPGA: Recv ZSGSRD 30385 17-03-17 23:42:48.838 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:48.838 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:48.838 -07 000000502 INF: FPGA: Recv ZSGSRD 30382 17-03-17 23:42:48.848 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:48.848 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:48.848 -07 000000623 INF: FPGA: Recv ZSGSRD 30378 17-03-17 23:42:48.858 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:48.858 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:48.858 -07 000000486 INF: FPGA: Recv ZSGSRD 30381 17-03-17 23:42:48.868 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:48.868 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:48.868 -07 000000448 INF: FPGA: Recv ZSGSRD 30375 17-03-17 23:42:48.878 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:48.878 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:48.878 -07 000000480 INF: FPGA: Recv ZSGSRD 30387 17-03-17 23:42:48.888 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:48.888 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:48.888 -07 000000482 INF: FPGA: Recv ZSGSRD 30383 17-03-17 23:42:48.898 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:48.898 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:48.898 -07 000000618 INF: FPGA: Recv ZSGSRD 30380 17-03-17 23:42:48.908 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:48.908 -07 000000547 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:42:48.908 -07 000000541 INF: FPGA: Recv ZPIEZORD 26927 17-03-17 23:42:48.918 -07 000000547 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:48.918 -07 000000547 INF: Z Motor: Piezo is near 37.5 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.516 V. Piezo Error = -7.6 V. 17-03-17 23:42:48.918 -07 000000547 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.5 um, Read 10 ADC samples: Avg = 30381 (-134.7 uncal um), Error = 0.8 uncal um, Median = 30382 (-134.7 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30375 (-134.7 uncal um), Max = 30387 (-134.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um) 17-03-17 23:42:48.918 -07 000000547 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30381, posNoise = 6, negNoise = 6 17-03-17 23:42:48.918 -07 000000547 INF: Z Motor: After move to -0.135482, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:42:48.918 -07 000000547 INF: Z Motor: Settle wait time = 1435 ms, measure time = 110 ms (allowed 150 ms), total time = 1545 ms 17-03-17 23:42:48.918 -07 000000547 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms 17-03-17 23:42:48.958 -07 000000547 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1711 ms 17-03-17 23:42:48.958 -07 000000547 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 23:42:48.958 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:42:48.958 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:42:48.958 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:42:48.958 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:42:48.958 -07 000000409 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 23:42:48.958 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:42:48.958 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:42:48.958 -07 000000409 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 23:42:48.968 -07 000000409 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms. 17-03-17 23:42:48.968 -07 000000409 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 23:42:48.968 -07 000000409 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms. 17-03-17 23:42:48.968 -07 000000409 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms. 17-03-17 23:42:48.978 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:42:49.018 -07 000000623 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 23:42:49.318 -07 000000409 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-17 23:42:49.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-17 23:42:49.318 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 23:42:49.318 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 611574712, 0x0, 559484976) start. 17-03-17 23:42:49.358 -07 000000502 INF: FPGA: Recv @CAMSNAP 380 17-03-17 23:42:49.358 -07 000000541 INF: FPGA: Recv CAMSNAP 17-03-17 23:42:49.358 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 385 ms overall 17-03-17 23:42:49.448 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 611574712, 0x0, 559484976) end. Duration was 127 ms. 17-03-17 23:42:49.448 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:42:49.448 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-17 23:42:49.448 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms. 17-03-17 23:42:49.558 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:42:49.558 -07 000000448 INF: Autofocus start 17-03-17 23:42:49.558 -07 000000448 INF: MeasureProfile start 17-03-17 23:42:49.558 -07 000000438 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:42:49.568 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 23:42:49.568 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 23:42:49.568 -07 000000448 INF: MeasureProfile done 17-03-17 23:42:49.568 -07 000000448 INF: X=-96 Z correction [um]=-0.4707136 17-03-17 23:42:49.568 -07 000000448 INF: Autofocus finished 17-03-17 23:42:49.768 -07 000000438 INF: FPGA: Recv FOCMRRIMG 17-03-17 23:42:49.768 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 23:42:49.768 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.69384765625, Z-position -0.135497341089975. ---------- 17-03-17 23:42:49.768 -07 000000610 INF: Cycle 77 Tile 14 Exposure Settings A 1037 G 500 T 500 C 1037 17-03-17 23:42:49.768 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28006, sync = True, waitForSettling = True) 17-03-17 23:42:49.778 -07 000000610 INF: Z Motor: Moving to -0.128203 mm, started at -0.135497 mm, distance = 7.29 um 17-03-17 23:42:49.778 -07 000000610 INF: FPGA: Xmit ZDACW 28006\n [Z Motor] 17-03-17 23:42:49.778 -07 000000459 INF: FPGA: Recv ZDACW 17-03-17 23:42:49.788 -07 000000610 INF: FPGA: 'ZDACW 28006' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:49.788 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:42:49.788 -07 000000547 INF: FPGA: Recv ZDACR 28006 17-03-17 23:42:49.798 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:49.798 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:42:49.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:49.948 -07 000000480 INF: FPGA: Recv ZSGSRD 29249 17-03-17 23:42:49.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:42:49.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:49.958 -07 000000409 INF: FPGA: Recv ZSGSRD 29248 17-03-17 23:42:49.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:49.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:49.968 -07 000000486 INF: FPGA: Recv ZSGSRD 29243 17-03-17 23:42:49.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:49.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:49.978 -07 000000618 INF: FPGA: Recv ZSGSRD 29243 17-03-17 23:42:49.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:49.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:49.988 -07 000000502 INF: FPGA: Recv ZSGSRD 29250 17-03-17 23:42:49.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:49.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:49.998 -07 000000627 INF: FPGA: Recv ZSGSRD 29245 17-03-17 23:42:50.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:50.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:50.008 -07 000000482 INF: FPGA: Recv ZSGSRD 29248 17-03-17 23:42:50.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:50.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:50.018 -07 000000480 INF: FPGA: Recv ZSGSRD 29250 17-03-17 23:42:50.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:42:50.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:50.028 -07 000000576 INF: FPGA: Recv ZSGSRD 29244 17-03-17 23:42:50.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:50.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:50.038 -07 000000627 INF: FPGA: Recv ZSGSRD 29244 17-03-17 23:42:50.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:50.048 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:42:50.048 -07 000000561 INF: FPGA: Recv ZPIEZORD 25421 17-03-17 23:42:50.058 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:50.058 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.273 V. Piezo Error = -8.4 V. 17-03-17 23:42:50.058 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.2 um, Read 10 ADC samples: Avg = 29246 (-127.4 uncal um), Error = 0.8 uncal um, Median = 29246 (-127.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29243 (-127.4 uncal um), Max = 29250 (-127.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um) 17-03-17 23:42:50.058 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29246, posNoise = 4, negNoise = 3 17-03-17 23:42:50.058 -07 000000610 INF: Z Motor: After move to -0.128203, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:42:50.058 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms) 17-03-17 23:42:50.058 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:42:50.058 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:42:50.058 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:42:50.058 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:42:50.058 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 23:42:50.058 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:42:50.058 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 23:42:50.058 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 23:42:50.058 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:42:50.058 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 23:42:50.058 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-17 23:42:50.058 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 23:42:50.058 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms. 17-03-17 23:42:50.058 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 23:42:50.058 -07 000000502 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-17 23:42:50.058 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 23:42:50.068 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 8 ms. 17-03-17 23:42:50.068 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 12 ms. 17-03-17 23:42:50.068 -07 000000502 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 9 ms. 17-03-17 23:42:50.068 -07 000000502 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 13 ms. 17-03-17 23:42:50.078 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 28183 150\n [Camera] 17-03-17 23:42:50.278 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 196 17-03-17 23:42:51.118 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 3.973092, 17-03-17 23:42:51.318 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229 17-03-17 23:42:51.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229 17-03-17 23:42:51.318 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:42:51.318 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229 17-03-17 23:42:51.318 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229 17-03-17 23:42:51.318 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:42:51.328 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:42:51.328 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) start. 17-03-17 23:42:51.328 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:42:51.328 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start. 17-03-17 23:42:51.508 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28183 1422 17-03-17 23:42:51.658 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572 17-03-17 23:42:51.718 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) end. Duration was 397 ms. 17-03-17 23:42:51.718 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms. 17-03-17 23:42:51.718 -07 000000438 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:42:51.728 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 396 ms. 17-03-17 23:42:51.728 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms. 17-03-17 23:42:51.728 -07 000000409 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:42:51.728 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:42:51.728 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms. 17-03-17 23:42:51.728 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:42:51.738 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms. 17-03-17 23:42:52.098 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:42:52.098 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:42:52.158 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072 17-03-17 23:42:52.158 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072 17-03-17 23:42:52.158 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:42:52.158 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072 17-03-17 23:42:52.158 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072 17-03-17 23:42:52.168 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:42:52.168 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:42:52.168 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start. 17-03-17 23:42:52.168 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:42:52.168 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) start. 17-03-17 23:42:52.348 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 2265 17-03-17 23:42:52.348 -07 000000448 INF: FPGA: Recv CAMDBLSNAP 17-03-17 23:42:52.348 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 28183 150' command took 2 ms to send, 2266 ms to get response, and 2272 ms overall 17-03-17 23:42:52.348 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-17 23:42:52.348 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.69384765625, Z-Position -0.128205860309076. ------ 17-03-17 23:42:52.358 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:42:52.358 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13501 mm 17-03-17 23:42:52.358 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 23:42:52.358 -07 000000541 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True) 17-03-17 23:42:52.358 -07 000000541 INF: Y Motor: Moving to 71.5326 mm, started at 70.6938 mm, delta = 0.8388 mm 17-03-17 23:42:52.358 -07 000000409 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:42:52.358 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 29494, sync = True, waitForSettling = False) 17-03-17 23:42:52.358 -07 000000512 INF: Z Motor: Moving to -0.135015 mm, started at -0.128206 mm, distance = -6.81 um 17-03-17 23:42:52.368 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:42:52.368 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:42:52.368 -07 000000618 INF: FPGA: Recv YRDPOS 144782 17-03-17 23:42:52.378 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 14 ms overall 17-03-17 23:42:52.378 -07 000000512 INF: FPGA: Xmit ZDACW 29494\n [Z Motor] 17-03-17 23:42:52.378 -07 000000541 INF: Y Motor: Encoder = 144782 = motor step 113110.9 = 70.6943 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:42:52.498 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 23:42:52.498 -07 000000576 INF: FPGA: Recv ZDACW 17-03-17 23:42:52.498 -07 000000512 INF: FPGA: 'ZDACW 29494' command took 0 ms to send, 0 ms to get response, and 138 ms overall 17-03-17 23:42:52.498 -07 000000541 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 23:42:52.498 -07 000000541 INF: Y Motor: Moving 1341 steps-18 17-03-17 23:42:52.508 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:42:52.508 -07 000000623 INF: FPGA: Recv ZDACR 29494 17-03-17 23:42:52.518 -07 000000541 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 23:42:52.518 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 14 ms overall 17-03-17 23:42:52.518 -07 000000512 INF: Z Motor: MoveAbsStepped took 153 ms (did NOT wait for settling yet)) 17-03-17 23:42:52.568 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 399 ms. 17-03-17 23:42:52.568 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms. 17-03-17 23:42:52.568 -07 000000486 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:42:52.568 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:42:52.568 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms. 17-03-17 23:42:52.568 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2199785120, 0x0, 418435064) end. Duration was 399 ms. 17-03-17 23:42:52.568 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms. 17-03-17 23:42:52.568 -07 000000561 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:42:52.578 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:42:52.578 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms. 17-03-17 23:42:52.698 -07 000000459 INF: FPGA: Recv FOCMRRFOC 17-03-17 23:42:52.698 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 197 ms to get response, and 337 ms overall 17-03-17 23:42:52.888 -07 000000512 INF: FPGA: Recv YMVTILE 17-03-17 23:42:52.888 -07 000000541 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall 17-03-17 23:42:52.928 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:42:52.938 -07 000000448 INF: FPGA: Recv YRDPOS 146483 17-03-17 23:42:52.948 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:42:52.948 -07 000000541 INF: Y Motor: Encoder = 146483 = motor step 114439.8 = 71.5249 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:42:52.948 -07 000000541 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm) 17-03-17 23:42:52.948 -07 000000541 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.839 mm, average velocity = 2.140 mm/sec 17-03-17 23:42:53.898 -07 000000541 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:42:53.898 -07 000000433 INF: FPGA: Recv YRDPOS 146484 17-03-17 23:42:53.908 -07 000000541 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:42:53.908 -07 000000541 INF: Y Motor: Encoder = 146484 = motor step 114440.6 = 71.5254 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:42:53.928 -07 000000541 INF: Y Motor: After move to 71.532608, error = -0.007217, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 23:42:53.928 -07 000000541 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 1 counts (0.000 mm) 17-03-17 23:42:53.928 -07 000000541 INF: Y Motor: Moved to 71.5254 after 1567 ms (table move) 17-03-17 23:42:53.928 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135015 mm (DAC = 29494) 17-03-17 23:42:53.928 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:53.928 -07 000000502 INF: FPGA: Recv ZSGSRD 30312 17-03-17 23:42:53.938 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-17 23:42:53.938 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:53.938 -07 000000623 INF: FPGA: Recv ZSGSRD 30312 17-03-17 23:42:53.948 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:53.948 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:53.948 -07 000000480 INF: FPGA: Recv ZSGSRD 30307 17-03-17 23:42:53.958 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:53.958 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:53.958 -07 000000541 INF: FPGA: Recv ZSGSRD 30304 17-03-17 23:42:53.968 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:53.968 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:53.968 -07 000000502 INF: FPGA: Recv ZSGSRD 30301 17-03-17 23:42:53.978 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:53.978 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:53.978 -07 000000623 INF: FPGA: Recv ZSGSRD 30304 17-03-17 23:42:53.988 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:53.988 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:53.988 -07 000000480 INF: FPGA: Recv ZSGSRD 30306 17-03-17 23:42:53.998 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:53.998 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:53.998 -07 000000561 INF: FPGA: Recv ZSGSRD 30314 17-03-17 23:42:54.008 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:54.008 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:54.008 -07 000000547 INF: FPGA: Recv ZSGSRD 30317 17-03-17 23:42:54.018 -07 000000438 INF: FPGA: 'ZSGSRD' command took 4 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:54.018 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:54.018 -07 000000623 INF: FPGA: Recv ZSGSRD 30308 17-03-17 23:42:54.028 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:54.028 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:42:54.028 -07 000000448 INF: FPGA: Recv ZPIEZORD 26836 17-03-17 23:42:54.038 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:54.038 -07 000000438 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.500 V. Piezo Error = -7.7 V. 17-03-17 23:42:54.038 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.0 um, Read 10 ADC samples: Avg = 30308 (-134.2 uncal um), Error = 0.8 uncal um, Median = 30308 (-134.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30301 (-134.2 uncal um), Max = 30317 (-134.3 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um) 17-03-17 23:42:54.038 -07 000000438 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30308, posNoise = 9, negNoise = 7 17-03-17 23:42:54.038 -07 000000438 INF: Z Motor: After move to -0.135015, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:42:54.038 -07 000000438 INF: Z Motor: Settle wait time = 1569 ms, measure time = 105 ms (allowed 150 ms), total time = 1674 ms 17-03-17 23:42:54.038 -07 000000438 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms 17-03-17 23:42:54.088 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1727 ms 17-03-17 23:42:54.088 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 23:42:54.088 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:42:54.088 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:42:54.088 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:42:54.088 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:42:54.088 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 23:42:54.088 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:42:54.088 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:42:54.088 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 23:42:54.098 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 5 ms. 17-03-17 23:42:54.098 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 23:42:54.108 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 14 ms. 17-03-17 23:42:54.108 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 21 ms. 17-03-17 23:42:54.118 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:42:54.158 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 23:42:54.458 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-17 23:42:54.458 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-17 23:42:54.458 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 23:42:54.458 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 611574712, 0x0, 559484976) start. 17-03-17 23:42:54.498 -07 000000409 INF: FPGA: Recv @CAMSNAP 380 17-03-17 23:42:54.498 -07 000000448 INF: FPGA: Recv CAMSNAP 17-03-17 23:42:54.498 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 385 ms overall 17-03-17 23:42:54.588 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 611574712, 0x0, 559484976) end. Duration was 122 ms. 17-03-17 23:42:54.588 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:42:54.588 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-17 23:42:54.588 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 125 ms. 17-03-17 23:42:54.598 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:42:54.598 -07 000000561 INF: Autofocus start 17-03-17 23:42:54.598 -07 000000561 INF: MeasureProfile start 17-03-17 23:42:54.598 -07 000000627 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:42:54.608 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 23:42:54.608 -07 000000475 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 23:42:54.608 -07 000000561 INF: MeasureProfile done 17-03-17 23:42:54.608 -07 000000561 INF: X=0 Z correction [um]=-0.02394831 17-03-17 23:42:54.608 -07 000000561 INF: Autofocus finished 17-03-17 23:42:54.808 -07 000000627 INF: FPGA: Recv FOCMRRIMG 17-03-17 23:42:54.808 -07 000000475 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 194 ms to get response, and 202 ms overall 17-03-17 23:42:54.808 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.525390625, Z-position -0.135028373603626. ---------- 17-03-17 23:42:54.808 -07 000000610 INF: Cycle 77 Tile 15 Exposure Settings A 1037 G 500 T 500 C 1037 17-03-17 23:42:54.818 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28001, sync = True, waitForSettling = True) 17-03-17 23:42:54.818 -07 000000610 INF: Z Motor: Moving to -0.128180 mm, started at -0.135028 mm, distance = 6.85 um 17-03-17 23:42:54.818 -07 000000610 INF: FPGA: Xmit ZDACW 28001\n [Z Motor] 17-03-17 23:42:54.818 -07 000000459 INF: FPGA: Recv ZDACW 17-03-17 23:42:54.828 -07 000000610 INF: FPGA: 'ZDACW 28001' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:42:54.828 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:42:54.828 -07 000000576 INF: FPGA: Recv ZDACR 28001 17-03-17 23:42:54.838 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:54.838 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:42:54.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:54.988 -07 000000623 INF: FPGA: Recv ZSGSRD 29248 17-03-17 23:42:54.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:42:54.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:54.998 -07 000000486 INF: FPGA: Recv ZSGSRD 29246 17-03-17 23:42:55.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:55.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:55.008 -07 000000618 INF: FPGA: Recv ZSGSRD 29237 17-03-17 23:42:55.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:55.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:55.018 -07 000000433 INF: FPGA: Recv ZSGSRD 29243 17-03-17 23:42:55.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:55.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:55.028 -07 000000512 INF: FPGA: Recv ZSGSRD 29241 17-03-17 23:42:55.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:55.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:55.038 -07 000000623 INF: FPGA: Recv ZSGSRD 29250 17-03-17 23:42:55.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:55.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:55.048 -07 000000486 INF: FPGA: Recv ZSGSRD 29241 17-03-17 23:42:55.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:55.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:55.058 -07 000000541 INF: FPGA: Recv ZSGSRD 29240 17-03-17 23:42:55.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:55.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:55.068 -07 000000618 INF: FPGA: Recv ZSGSRD 29250 17-03-17 23:42:55.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:55.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:55.078 -07 000000502 INF: FPGA: Recv ZSGSRD 29234 17-03-17 23:42:55.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:55.088 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:42:55.088 -07 000000438 INF: FPGA: Recv ZPIEZORD 25412 17-03-17 23:42:55.098 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:55.098 -07 000000610 INF: Z Motor: Piezo is near 34.3 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.273 V. Piezo Error = -8.4 V. 17-03-17 23:42:55.098 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.2 um, Read 10 ADC samples: Avg = 29243 (-127.4 uncal um), Error = 0.8 uncal um, Median = 29242 (-127.4 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 29234 (-127.4 uncal um), Max = 29250 (-127.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um) 17-03-17 23:42:55.098 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29243, posNoise = 7, negNoise = 9 17-03-17 23:42:55.098 -07 000000610 INF: Z Motor: After move to -0.128180, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:42:55.098 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms) 17-03-17 23:42:55.098 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:42:55.098 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:42:55.098 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:42:55.098 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 23:42:55.098 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:42:55.098 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:42:55.098 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 23:42:55.098 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 23:42:55.098 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:42:55.098 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 23:42:55.098 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-17 23:42:55.098 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 23:42:55.108 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms. 17-03-17 23:42:55.108 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 23:42:55.108 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-17 23:42:55.108 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 23:42:55.118 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms. 17-03-17 23:42:55.118 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms. 17-03-17 23:42:55.118 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms. 17-03-17 23:42:55.118 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms. 17-03-17 23:42:55.128 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 28178 150\n [Camera] 17-03-17 23:42:55.328 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 23:42:56.368 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229 17-03-17 23:42:56.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229 17-03-17 23:42:56.368 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:42:56.368 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:42:56.368 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start. 17-03-17 23:42:56.368 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229 17-03-17 23:42:56.368 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229 17-03-17 23:42:56.368 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:42:56.368 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:42:56.368 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) start. 17-03-17 23:42:56.478 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 3.996267, 17-03-17 23:42:56.558 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28178 1422 17-03-17 23:42:56.708 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572 17-03-17 23:42:56.758 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1406045800, 0x0, 418435064) end. Duration was 392 ms. 17-03-17 23:42:56.758 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms. 17-03-17 23:42:56.758 -07 000000561 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:42:56.758 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 395 ms. 17-03-17 23:42:56.758 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms. 17-03-17 23:42:56.758 -07 000000512 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:42:56.768 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:42:56.768 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:42:56.768 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms. 17-03-17 23:42:56.768 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms. 17-03-17 23:42:57.098 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:42:57.098 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:42:57.208 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072 17-03-17 23:42:57.208 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072 17-03-17 23:42:57.208 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:42:57.208 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:42:57.208 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) start. 17-03-17 23:42:57.208 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072 17-03-17 23:42:57.208 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072 17-03-17 23:42:57.208 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:42:57.208 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:42:57.208 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start. 17-03-17 23:42:57.398 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 2265 17-03-17 23:42:57.398 -07 000000438 INF: FPGA: Recv CAMDBLSNAP 17-03-17 23:42:57.398 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 28178 150' command took 2 ms to send, 2266 ms to get response, and 2275 ms overall 17-03-17 23:42:57.398 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-17 23:42:57.398 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.525390625, Z-Position -0.128186587672651. ------ 17-03-17 23:42:57.408 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:42:57.408 -07 000000541 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13499 mm 17-03-17 23:42:57.408 -07 000000541 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 23:42:57.408 -07 000000627 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True) 17-03-17 23:42:57.408 -07 000000627 INF: Y Motor: Moving to 72.3626 mm, started at 71.5254 mm, delta = 0.8372 mm 17-03-17 23:42:57.408 -07 000000547 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:42:57.408 -07 000000502 INF: Z Motor: Entering MoveAbsStepped (DAC = 29488, sync = True, waitForSettling = False) 17-03-17 23:42:57.408 -07 000000502 INF: Z Motor: Moving to -0.134987 mm, started at -0.128187 mm, distance = -6.80 um 17-03-17 23:42:57.418 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:42:57.418 -07 000000502 INF: FPGA: Xmit ZDACW 29488\n [Z Motor] 17-03-17 23:42:57.418 -07 000000618 INF: FPGA: Recv ZDACW 17-03-17 23:42:57.428 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 23:42:57.428 -07 000000502 INF: FPGA: 'ZDACW 29488' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:42:57.438 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:42:57.438 -07 000000547 INF: FPGA: Recv YRDPOS 146484 17-03-17 23:42:57.448 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 31 ms overall 17-03-17 23:42:57.448 -07 000000627 INF: Y Motor: Encoder = 146484 = motor step 114440.6 = 71.5254 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:42:57.448 -07 000000627 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 23:42:57.448 -07 000000627 INF: Y Motor: Moving 1340 steps-16 17-03-17 23:42:57.448 -07 000000502 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:42:57.448 -07 000000482 INF: FPGA: Recv ZDACR 29488 17-03-17 23:42:57.458 -07 000000502 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 29 ms overall 17-03-17 23:42:57.458 -07 000000502 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet)) 17-03-17 23:42:57.458 -07 000000627 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 23:42:57.618 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 401 ms. 17-03-17 23:42:57.618 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms. 17-03-17 23:42:57.618 -07 000000480 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:42:57.618 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1441468064, 0x0, 391868352) end. Duration was 404 ms. 17-03-17 23:42:57.618 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms. 17-03-17 23:42:57.618 -07 000000459 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:42:57.618 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:42:57.618 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms. 17-03-17 23:42:57.618 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms. 17-03-17 23:42:57.628 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms. 17-03-17 23:42:57.628 -07 000000561 INF: FPGA: Recv FOCMRRFOC 17-03-17 23:42:57.628 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 212 ms overall 17-03-17 23:42:57.838 -07 000000576 INF: FPGA: Recv YMVTILE 17-03-17 23:42:57.838 -07 000000627 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 389 ms overall 17-03-17 23:42:57.878 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:42:57.878 -07 000000512 INF: FPGA: Recv YRDPOS 148183 17-03-17 23:42:57.888 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:42:57.888 -07 000000627 INF: Y Motor: Encoder = 148183 = motor step 115768.0 = 72.3550 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:42:57.888 -07 000000627 INF: Y Motor: Position error before settling (table move) = -16 encoder counts (-0.008 mm) 17-03-17 23:42:57.888 -07 000000627 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 389 ms, distance = 0.837 mm, average velocity = 2.152 mm/sec 17-03-17 23:42:58.838 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:42:58.838 -07 000000482 INF: FPGA: Recv YRDPOS 148183 17-03-17 23:42:58.848 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:42:58.848 -07 000000627 INF: Y Motor: Encoder = 148183 = motor step 115768.0 = 72.3550 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:42:58.868 -07 000000627 INF: Y Motor: After move to 72.362610, error = -0.007629, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 23:42:58.868 -07 000000627 INF: Y Motor: Position error after settling (table move) = -16 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm) 17-03-17 23:42:58.868 -07 000000627 INF: Y Motor: Moved to 72.3550 after 1457 ms (table move) 17-03-17 23:42:58.878 -07 000000541 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134987 mm (DAC = 29488) 17-03-17 23:42:58.878 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:58.878 -07 000000438 INF: FPGA: Recv ZSGSRD 30312 17-03-17 23:42:58.888 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:58.888 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:58.888 -07 000000618 INF: FPGA: Recv ZSGSRD 30304 17-03-17 23:42:58.898 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:58.898 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:58.898 -07 000000576 INF: FPGA: Recv ZSGSRD 30305 17-03-17 23:42:58.908 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:58.908 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:58.908 -07 000000561 INF: FPGA: Recv ZSGSRD 30302 17-03-17 23:42:58.918 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:58.918 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:58.918 -07 000000502 INF: FPGA: Recv ZSGSRD 30304 17-03-17 23:42:58.928 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:58.928 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:58.928 -07 000000480 INF: FPGA: Recv ZSGSRD 30300 17-03-17 23:42:58.938 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:58.938 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:58.938 -07 000000547 INF: FPGA: Recv ZSGSRD 30300 17-03-17 23:42:58.948 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:58.948 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:58.948 -07 000000576 INF: FPGA: Recv ZSGSRD 30308 17-03-17 23:42:58.958 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:58.958 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:58.958 -07 000000627 INF: FPGA: Recv ZSGSRD 30310 17-03-17 23:42:58.968 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:58.968 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:42:58.968 -07 000000475 INF: FPGA: Recv ZSGSRD 30304 17-03-17 23:42:58.978 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:58.978 -07 000000541 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:42:58.978 -07 000000618 INF: FPGA: Recv ZPIEZORD 26821 17-03-17 23:42:58.988 -07 000000541 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:58.988 -07 000000541 INF: Z Motor: Piezo is near 37.3 V (nominally 0 to 100 V), expect near 45.0 V, since DAC is at 4.500 V. Piezo Error = -7.7 V. 17-03-17 23:42:58.988 -07 000000541 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.0 um, Read 10 ADC samples: Avg = 30305 (-134.2 uncal um), Error = 0.8 uncal um, Median = 30304 (-134.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30300 (-134.2 uncal um), Max = 30312 (-134.3 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-17 23:42:58.988 -07 000000541 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30305, posNoise = 7, negNoise = 5 17-03-17 23:42:58.988 -07 000000541 INF: Z Motor: After move to -0.134987, error = -0.000022, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:42:58.988 -07 000000541 INF: Z Motor: Settle wait time = 1461 ms, measure time = 109 ms (allowed 150 ms), total time = 1570 ms 17-03-17 23:42:58.988 -07 000000541 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms 17-03-17 23:42:59.038 -07 000000541 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1627 ms 17-03-17 23:42:59.038 -07 000000541 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 23:42:59.038 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:42:59.038 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:42:59.048 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:42:59.048 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:42:59.048 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 23:42:59.048 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:42:59.048 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:42:59.048 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 23:42:59.048 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-17 23:42:59.048 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 23:42:59.058 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms. 17-03-17 23:42:59.058 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms. 17-03-17 23:42:59.058 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:42:59.098 -07 000000482 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 23:42:59.398 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-17 23:42:59.398 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-17 23:42:59.398 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 23:42:59.408 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) start. 17-03-17 23:42:59.438 -07 000000480 INF: FPGA: Recv @CAMSNAP 380 17-03-17 23:42:59.438 -07 000000433 INF: FPGA: Recv CAMSNAP 17-03-17 23:42:59.438 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall 17-03-17 23:42:59.528 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) end. Duration was 127 ms. 17-03-17 23:42:59.528 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:42:59.528 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms. 17-03-17 23:42:59.528 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms. 17-03-17 23:42:59.638 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:42:59.638 -07 000000448 INF: Autofocus start 17-03-17 23:42:59.638 -07 000000448 INF: MeasureProfile start 17-03-17 23:42:59.638 -07 000000627 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:42:59.648 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 23:42:59.648 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 23:42:59.648 -07 000000448 INF: MeasureProfile done 17-03-17 23:42:59.648 -07 000000448 INF: X=-96 Z correction [um]=-0.4707136 17-03-17 23:42:59.648 -07 000000448 INF: Autofocus finished 17-03-17 23:42:59.848 -07 000000486 INF: FPGA: Recv FOCMRRIMG 17-03-17 23:42:59.848 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 23:42:59.848 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.35498046875, Z-position -0.135009100967201. ---------- 17-03-17 23:42:59.848 -07 000000610 INF: Cycle 77 Tile 16 Exposure Settings A 1037 G 500 T 500 C 1037 17-03-17 23:42:59.858 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27898, sync = True, waitForSettling = True) 17-03-17 23:42:59.858 -07 000000610 INF: Z Motor: Moving to -0.127709 mm, started at -0.135009 mm, distance = 7.30 um 17-03-17 23:42:59.858 -07 000000610 INF: FPGA: Xmit ZDACW 27898\n [Z Motor] 17-03-17 23:42:59.858 -07 000000576 INF: FPGA: Recv ZDACW 17-03-17 23:42:59.868 -07 000000610 INF: FPGA: 'ZDACW 27898' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:42:59.868 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:42:59.868 -07 000000475 INF: FPGA: Recv ZDACR 27898 17-03-17 23:42:59.878 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:42:59.878 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:43:00.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:43:00.028 -07 000000486 INF: FPGA: Recv ZSGSRD 29173 17-03-17 23:43:00.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:43:00.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:43:00.038 -07 000000448 INF: FPGA: Recv ZSGSRD 29171 17-03-17 23:43:00.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:43:00.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:43:00.048 -07 000000627 INF: FPGA: Recv ZSGSRD 29174 17-03-17 23:43:00.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:43:00.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:43:00.058 -07 000000512 INF: FPGA: Recv ZSGSRD 29165 17-03-17 23:43:00.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:43:00.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:43:00.068 -07 000000502 INF: FPGA: Recv ZSGSRD 29170 17-03-17 23:43:00.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:43:00.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:43:00.078 -07 000000623 INF: FPGA: Recv ZSGSRD 29172 17-03-17 23:43:00.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:43:00.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:43:00.088 -07 000000448 INF: FPGA: Recv ZSGSRD 29169 17-03-17 23:43:00.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:43:00.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:43:00.098 -07 000000627 INF: FPGA: Recv ZSGSRD 29168 17-03-17 23:43:00.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:43:00.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:43:00.108 -07 000000561 INF: FPGA: Recv ZSGSRD 29172 17-03-17 23:43:00.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:43:00.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:43:00.118 -07 000000486 INF: FPGA: Recv ZSGSRD 29171 17-03-17 23:43:00.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:43:00.128 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:43:00.128 -07 000000547 INF: FPGA: Recv ZPIEZORD 25298 17-03-17 23:43:00.138 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:43:00.138 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.257 V. Piezo Error = -8.5 V. 17-03-17 23:43:00.138 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.7 um, Read 10 ADC samples: Avg = 29170 (-126.9 uncal um), Error = 0.8 uncal um, Median = 29171 (-127.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29165 (-126.9 uncal um), Max = 29174 (-127.0 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-17 23:43:00.138 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29170, posNoise = 4, negNoise = 5 17-03-17 23:43:00.138 -07 000000610 INF: Z Motor: After move to -0.127709, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:43:00.138 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms) 17-03-17 23:43:00.138 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:43:00.138 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:43:00.138 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:43:00.138 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:43:00.138 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 23:43:00.138 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:43:00.138 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 23:43:00.138 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 23:43:00.138 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:43:00.138 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 23:43:00.138 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-17 23:43:00.148 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 23:43:00.148 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms. 17-03-17 23:43:00.148 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 23:43:00.148 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-17 23:43:00.148 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 23:43:00.158 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms. 17-03-17 23:43:00.158 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms. 17-03-17 23:43:00.158 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms. 17-03-17 23:43:00.158 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms. 17-03-17 23:43:00.168 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 28075 150\n [Camera] 17-03-17 23:43:00.368 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 23:43:01.398 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229 17-03-17 23:43:01.398 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229 17-03-17 23:43:01.398 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:43:01.398 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:43:01.398 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2244017992, 0x0, 391868352) start. 17-03-17 23:43:01.408 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229 17-03-17 23:43:01.408 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229 17-03-17 23:43:01.408 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:43:01.408 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:43:01.408 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start. 17-03-17 23:43:01.598 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28075 1422 17-03-17 23:43:01.748 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572 17-03-17 23:43:01.808 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2244017992, 0x0, 391868352) end. Duration was 401 ms. 17-03-17 23:43:01.808 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms. 17-03-17 23:43:01.808 -07 000000459 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:43:01.808 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 401 ms. 17-03-17 23:43:01.808 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms. 17-03-17 23:43:01.808 -07 000000433 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:43:01.808 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:43:01.808 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms. 17-03-17 23:43:01.808 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:43:01.818 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms. 17-03-17 23:43:01.838 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 4.018051, 17-03-17 23:43:02.098 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:43:02.098 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:43:02.248 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072 17-03-17 23:43:02.248 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072 17-03-17 23:43:02.248 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:43:02.248 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:43:02.248 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start. 17-03-17 23:43:02.248 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072 17-03-17 23:43:02.248 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072 17-03-17 23:43:02.248 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:43:02.248 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:43:02.248 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) start. 17-03-17 23:43:02.438 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP 2265 17-03-17 23:43:02.438 -07 000000409 INF: FPGA: Recv CAMDBLSNAP 17-03-17 23:43:02.438 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 28075 150' command took 2 ms to send, 2263 ms to get response, and 2272 ms overall 17-03-17 23:43:02.438 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-17 23:43:02.438 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.35498046875, Z-Position -0.127717620186302. ------ 17-03-17 23:43:02.578 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:43:02.578 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13452 mm 17-03-17 23:43:02.578 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 23:43:02.578 -07 000000438 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:43:02.578 -07 000000409 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True) 17-03-17 23:43:02.578 -07 000000409 INF: Y Motor: Moving to 73.1926 mm, started at 72.3550 mm, delta = 0.8376 mm 17-03-17 23:43:02.588 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-17 23:43:02.588 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:43:02.588 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 29385, sync = True, waitForSettling = False) 17-03-17 23:43:02.588 -07 000000512 INF: Z Motor: Moving to -0.134516 mm, started at -0.127718 mm, distance = -6.80 um 17-03-17 23:43:02.588 -07 000000627 INF: FPGA: Recv YRDPOS 148184 17-03-17 23:43:02.598 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:43:02.598 -07 000000409 INF: Y Motor: Encoder = 148184 = motor step 115768.8 = 72.3555 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:43:02.598 -07 000000482 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 23:43:02.598 -07 000000409 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 23:43:02.598 -07 000000409 INF: Y Motor: Moving 1339 steps-16 17-03-17 23:43:02.608 -07 000000512 INF: FPGA: Xmit ZDACW 29385\n [Z Motor] 17-03-17 23:43:02.608 -07 000000541 INF: FPGA: Recv ZDACW 17-03-17 23:43:02.618 -07 000000409 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 23:43:02.618 -07 000000512 INF: FPGA: 'ZDACW 29385' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-17 23:43:02.628 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:43:02.628 -07 000000547 INF: FPGA: Recv ZDACR 29385 17-03-17 23:43:02.638 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-17 23:43:02.638 -07 000000512 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet)) 17-03-17 23:43:02.648 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 407 ms. 17-03-17 23:43:02.648 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 407 ms. 17-03-17 23:43:02.648 -07 000000618 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:43:02.648 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) end. Duration was 404 ms. 17-03-17 23:43:02.648 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms. 17-03-17 23:43:02.658 -07 000000576 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:43:02.658 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:43:02.658 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms. 17-03-17 23:43:02.658 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 415 ms. 17-03-17 23:43:02.668 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms. 17-03-17 23:43:02.798 -07 000000480 INF: FPGA: Recv FOCMRRFOC 17-03-17 23:43:02.798 -07 000000482 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall 17-03-17 23:43:02.988 -07 000000486 INF: FPGA: Recv YMVTILE 17-03-17 23:43:02.988 -07 000000409 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall 17-03-17 23:43:03.028 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:43:03.038 -07 000000433 INF: FPGA: Recv YRDPOS 149877 17-03-17 23:43:03.038 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 4 ms overall 17-03-17 23:43:03.038 -07 000000409 INF: Y Motor: Encoder = 149877 = motor step 117091.4 = 73.1821 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:43:03.038 -07 000000409 INF: Y Motor: Position error before settling (table move) = -21 encoder counts (-0.010 mm) 17-03-17 23:43:03.038 -07 000000409 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 392 ms, distance = 0.838 mm, average velocity = 2.137 mm/sec 17-03-17 23:43:03.988 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:43:03.988 -07 000000475 INF: FPGA: Recv YRDPOS 149877 17-03-17 23:43:03.998 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:43:03.998 -07 000000409 INF: Y Motor: Encoder = 149877 = motor step 117091.4 = 73.1821 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:43:04.018 -07 000000409 INF: Y Motor: After move to 73.192604, error = -0.010475, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 23:43:04.018 -07 000000409 INF: Y Motor: Position error after settling (table move) = -21 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm) 17-03-17 23:43:04.018 -07 000000409 INF: Y Motor: Moved to 73.1821 after 1437 ms (table move) 17-03-17 23:43:04.028 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134516 mm (DAC = 29385) 17-03-17 23:43:04.028 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:43:04.028 -07 000000480 INF: FPGA: Recv ZSGSRD 30234 17-03-17 23:43:04.038 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:43:04.038 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:43:04.038 -07 000000541 INF: FPGA: Recv ZSGSRD 30232 17-03-17 23:43:04.048 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:43:04.048 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:43:04.048 -07 000000512 INF: FPGA: Recv ZSGSRD 30231 17-03-17 23:43:04.058 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:43:04.058 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:43:04.058 -07 000000623 INF: FPGA: Recv ZSGSRD 30230 17-03-17 23:43:04.068 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:43:04.068 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:43:04.068 -07 000000459 INF: FPGA: Recv ZSGSRD 30219 17-03-17 23:43:04.078 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:43:04.078 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:43:04.078 -07 000000480 INF: FPGA: Recv ZSGSRD 30229 17-03-17 23:43:04.088 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:43:04.088 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:43:04.088 -07 000000459 INF: FPGA: Recv ZSGSRD 30232 17-03-17 23:43:04.098 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:43:04.098 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:43:04.098 -07 000000576 INF: FPGA: Recv ZSGSRD 30226 17-03-17 23:43:04.108 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:43:04.108 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:43:04.108 -07 000000486 INF: FPGA: Recv ZSGSRD 30233 17-03-17 23:43:04.118 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:43:04.118 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:43:04.118 -07 000000623 INF: FPGA: Recv ZSGSRD 30235 17-03-17 23:43:04.128 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:43:04.128 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:43:04.128 -07 000000459 INF: FPGA: Recv ZPIEZORD 26731 17-03-17 23:43:04.138 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:43:04.138 -07 000000561 INF: Z Motor: Piezo is near 37.1 V (nominally 0 to 100 V), expect near 44.8 V, since DAC is at 4.484 V. Piezo Error = -7.7 V. 17-03-17 23:43:04.138 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.5 um, Read 10 ADC samples: Avg = 30230 (-133.7 uncal um), Error = 0.8 uncal um, Median = 30232 (-133.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30219 (-133.7 uncal um), Max = 30235 (-133.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 11 (0.1 uncal um) 17-03-17 23:43:04.138 -07 000000561 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30230, posNoise = 5, negNoise = 11 17-03-17 23:43:04.138 -07 000000561 INF: Z Motor: After move to -0.134516, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:43:04.138 -07 000000561 INF: Z Motor: Settle wait time = 1439 ms, measure time = 110 ms (allowed 150 ms), total time = 1549 ms 17-03-17 23:43:04.138 -07 000000561 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms 17-03-17 23:43:04.178 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1594 ms 17-03-17 23:43:04.178 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 23:43:04.178 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:43:04.178 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:43:04.178 -07 000000409 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:43:04.178 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:43:04.178 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 23:43:04.178 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:43:04.178 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:43:04.178 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 23:43:04.188 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms. 17-03-17 23:43:04.188 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 23:43:04.198 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 15 ms. 17-03-17 23:43:04.198 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 22 ms. 17-03-17 23:43:04.208 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:43:04.248 -07 000000475 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 23:43:04.548 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-17 23:43:04.548 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-17 23:43:04.548 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 23:43:04.548 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 611574712, 0x0, 559484976) start. 17-03-17 23:43:04.588 -07 000000502 INF: FPGA: Recv @CAMSNAP 380 17-03-17 23:43:04.588 -07 000000486 INF: FPGA: Recv CAMSNAP 17-03-17 23:43:04.588 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall 17-03-17 23:43:04.678 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 611574712, 0x0, 559484976) end. Duration was 126 ms. 17-03-17 23:43:04.678 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:43:04.678 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-17 23:43:04.678 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms. 17-03-17 23:43:04.688 -07 000000541 INF: Autofocus start 17-03-17 23:43:04.688 -07 000000541 INF: MeasureProfile start 17-03-17 23:43:04.688 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:43:04.688 -07 000000576 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:43:04.698 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 23:43:04.698 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 23:43:04.698 -07 000000541 INF: MeasureProfile done 17-03-17 23:43:04.698 -07 000000541 INF: X=-64 Z correction [um]=-0.3149434 17-03-17 23:43:04.698 -07 000000541 INF: Autofocus finished 17-03-17 23:43:04.898 -07 000000512 INF: FPGA: Recv FOCMRRIMG 17-03-17 23:43:04.898 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 23:43:04.898 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.18212890625, Z-position -0.134527285056569. ---------- 17-03-17 23:43:04.898 -07 000000610 INF: Cycle 77 Tile 17 Exposure Settings A 1037 G 500 T 500 C 1037 17-03-17 23:43:04.898 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27829, sync = True, waitForSettling = True) 17-03-17 23:43:04.908 -07 000000610 INF: Z Motor: Moving to -0.127393 mm, started at -0.134527 mm, distance = 7.13 um 17-03-17 23:43:04.908 -07 000000610 INF: FPGA: Xmit ZDACW 27829\n [Z Motor] 17-03-17 23:43:04.908 -07 000000438 INF: FPGA: Recv ZDACW 17-03-17 23:43:04.918 -07 000000610 INF: FPGA: 'ZDACW 27829' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:43:04.918 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:43:04.918 -07 000000547 INF: FPGA: Recv ZDACR 27829 17-03-17 23:43:04.928 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:43:04.928 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:43:05.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:43:05.078 -07 000000623 INF: FPGA: Recv ZSGSRD 29124 17-03-17 23:43:05.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:43:05.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:43:05.088 -07 000000576 INF: FPGA: Recv ZSGSRD 29126 17-03-17 23:43:05.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:43:05.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:43:05.098 -07 000000627 INF: FPGA: Recv ZSGSRD 29116 17-03-17 23:43:05.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:43:05.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:43:05.108 -07 000000475 INF: FPGA: Recv ZSGSRD 29117 17-03-17 23:43:05.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:43:05.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:43:05.118 -07 000000486 INF: FPGA: Recv ZSGSRD 29120 17-03-17 23:43:05.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:43:05.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:43:05.128 -07 000000502 INF: FPGA: Recv ZSGSRD 29127 17-03-17 23:43:05.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:43:05.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:43:05.138 -07 000000541 INF: FPGA: Recv ZSGSRD 29117 17-03-17 23:43:05.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:43:05.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:43:05.148 -07 000000480 INF: FPGA: Recv ZSGSRD 29117 17-03-17 23:43:05.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:43:05.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:43:05.158 -07 000000482 INF: FPGA: Recv ZSGSRD 29126 17-03-17 23:43:05.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:43:05.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:43:05.168 -07 000000561 INF: FPGA: Recv ZSGSRD 29121 17-03-17 23:43:05.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:43:05.178 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:43:05.178 -07 000000618 INF: FPGA: Recv ZPIEZORD 25265 17-03-17 23:43:05.188 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:43:05.188 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 42.5 V, since DAC is at 4.246 V. Piezo Error = -8.5 V. 17-03-17 23:43:05.188 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.4 um, Read 10 ADC samples: Avg = 29121 (-126.6 uncal um), Error = 0.8 uncal um, Median = 29120 (-126.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29116 (-126.6 uncal um), Max = 29127 (-126.7 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-17 23:43:05.188 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29121, posNoise = 6, negNoise = 5 17-03-17 23:43:05.188 -07 000000610 INF: Z Motor: After move to -0.127393, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:43:05.188 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms) 17-03-17 23:43:05.188 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:43:05.188 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:43:05.188 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:43:05.188 -07 000000409 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:43:05.188 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 23:43:05.188 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:43:05.188 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 23:43:05.188 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 23:43:05.188 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms. 17-03-17 23:43:05.188 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-17 23:43:05.188 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 23:43:05.188 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 23:43:05.198 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-17 23:43:05.198 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 23:43:05.198 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-17 23:43:05.198 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 23:43:05.208 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 17 ms. 17-03-17 23:43:05.208 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms. 17-03-17 23:43:05.208 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 17 ms. 17-03-17 23:43:05.208 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 24 ms. 17-03-17 23:43:05.218 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 28006 150\n [Camera] 17-03-17 23:43:05.418 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 23:43:06.448 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229 17-03-17 23:43:06.448 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229 17-03-17 23:43:06.448 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:43:06.458 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229 17-03-17 23:43:06.458 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229 17-03-17 23:43:06.458 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:43:06.458 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:43:06.458 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) start. 17-03-17 23:43:06.458 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:43:06.458 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start. 17-03-17 23:43:06.648 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28006 1422 17-03-17 23:43:06.798 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572 17-03-17 23:43:06.838 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 639799168, 0x0, 418435064) end. Duration was 384 ms. 17-03-17 23:43:06.838 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms. 17-03-17 23:43:06.838 -07 000000561 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:43:06.848 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:43:06.848 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms. 17-03-17 23:43:06.848 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 390 ms. 17-03-17 23:43:06.848 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 391 ms. 17-03-17 23:43:06.848 -07 000000576 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:43:06.858 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:43:06.858 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms. 17-03-17 23:43:07.098 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:43:07.098 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:43:07.198 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 4.018051, 17-03-17 23:43:07.298 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072 17-03-17 23:43:07.298 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072 17-03-17 23:43:07.298 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:43:07.298 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:43:07.298 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) start. 17-03-17 23:43:07.298 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072 17-03-17 23:43:07.298 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072 17-03-17 23:43:07.298 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:43:07.298 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:43:07.298 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start. 17-03-17 23:43:07.488 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP 2265 17-03-17 23:43:07.488 -07 000000618 INF: FPGA: Recv CAMDBLSNAP 17-03-17 23:43:07.488 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 28006 150' command took 2 ms to send, 2263 ms to get response, and 2272 ms overall 17-03-17 23:43:07.488 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-17 23:43:07.488 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.18212890625, Z-Position -0.127402833791356. ------ 17-03-17 23:43:07.488 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:43:07.488 -07 000000459 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13420 mm 17-03-17 23:43:07.488 -07 000000459 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 23:43:07.618 -07 000000448 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:43:07.618 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 125 ms to get response, and 127 ms overall 17-03-17 23:43:07.618 -07 000000482 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True) 17-03-17 23:43:07.618 -07 000000482 INF: Y Motor: Moving to 74.0226 mm, started at 73.1821 mm, delta = 0.8405 mm 17-03-17 23:43:07.618 -07 000000547 INF: Z Motor: Entering MoveAbsStepped (DAC = 29317, sync = True, waitForSettling = False) 17-03-17 23:43:07.618 -07 000000547 INF: Z Motor: Moving to -0.134205 mm, started at -0.127403 mm, distance = -6.80 um 17-03-17 23:43:07.628 -07 000000623 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 23:43:07.638 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:43:07.638 -07 000000618 INF: FPGA: Recv YRDPOS 149878 17-03-17 23:43:07.648 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall 17-03-17 23:43:07.648 -07 000000482 INF: Y Motor: Encoder = 149878 = motor step 117092.2 = 73.1826 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:43:07.648 -07 000000547 INF: FPGA: Xmit ZDACW 29317\n [Z Motor] 17-03-17 23:43:07.648 -07 000000433 INF: FPGA: Recv ZDACW 17-03-17 23:43:07.648 -07 000000482 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 23:43:07.648 -07 000000482 INF: Y Motor: Moving 1344 steps-21 17-03-17 23:43:07.658 -07 000000547 INF: FPGA: 'ZDACW 29317' command took 0 ms to send, 0 ms to get response, and 32 ms overall 17-03-17 23:43:07.668 -07 000000482 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 23:43:07.678 -07 000000547 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:43:07.678 -07 000000512 INF: FPGA: Recv ZDACR 29317 17-03-17 23:43:07.688 -07 000000547 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-17 23:43:07.688 -07 000000547 INF: Z Motor: MoveAbsStepped took 63 ms (did NOT wait for settling yet)) 17-03-17 23:43:07.698 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) end. Duration was 401 ms. 17-03-17 23:43:07.698 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms. 17-03-17 23:43:07.698 -07 000000541 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:43:07.698 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 400 ms. 17-03-17 23:43:07.698 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms. 17-03-17 23:43:07.698 -07 000000576 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:43:07.698 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:43:07.708 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms. 17-03-17 23:43:07.708 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms. 17-03-17 23:43:07.708 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms. 17-03-17 23:43:07.828 -07 000000480 INF: FPGA: Recv FOCMRRFOC 17-03-17 23:43:07.828 -07 000000623 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 207 ms overall 17-03-17 23:43:08.038 -07 000000561 INF: FPGA: Recv YMVTILE 17-03-17 23:43:08.038 -07 000000482 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall 17-03-17 23:43:08.078 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:43:08.078 -07 000000618 INF: FPGA: Recv YRDPOS 151581 17-03-17 23:43:08.088 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:43:08.088 -07 000000482 INF: Y Motor: Encoder = 151581 = motor step 118422.7 = 74.0142 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:43:08.088 -07 000000482 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm) 17-03-17 23:43:08.088 -07 000000482 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.840 mm, average velocity = 2.133 mm/sec 17-03-17 23:43:09.038 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:43:09.038 -07 000000627 INF: FPGA: Recv YRDPOS 151581 17-03-17 23:43:09.048 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:43:09.048 -07 000000482 INF: Y Motor: Encoder = 151581 = motor step 118422.7 = 74.0142 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:43:09.068 -07 000000482 INF: Y Motor: After move to 74.022606, error = -0.008446, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 23:43:09.068 -07 000000482 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm) 17-03-17 23:43:09.068 -07 000000482 INF: Y Motor: Moved to 74.0142 after 1450 ms (table move) 17-03-17 23:43:09.078 -07 000000459 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134205 mm (DAC = 29317) 17-03-17 23:43:09.078 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:43:09.078 -07 000000448 INF: FPGA: Recv ZSGSRD 30178 17-03-17 23:43:09.088 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:43:09.088 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:43:09.088 -07 000000618 INF: FPGA: Recv ZSGSRD 30185 17-03-17 23:43:09.098 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:43:09.098 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:43:09.098 -07 000000438 INF: FPGA: Recv ZSGSRD 30178 17-03-17 23:43:09.108 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:43:09.108 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:43:09.108 -07 000000547 INF: FPGA: Recv ZSGSRD 30179 17-03-17 23:43:09.118 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:43:09.118 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:43:09.118 -07 000000627 INF: FPGA: Recv ZSGSRD 30180 17-03-17 23:43:09.128 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:43:09.128 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:43:09.128 -07 000000618 INF: FPGA: Recv ZSGSRD 30182 17-03-17 23:43:09.138 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:43:09.138 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:43:09.138 -07 000000480 INF: FPGA: Recv ZSGSRD 30183 17-03-17 23:43:09.148 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:43:09.148 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:43:09.148 -07 000000409 INF: FPGA: Recv ZSGSRD 30178 17-03-17 23:43:09.158 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:43:09.158 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:43:09.158 -07 000000561 INF: FPGA: Recv ZSGSRD 30182 17-03-17 23:43:09.168 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:43:09.168 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:43:09.168 -07 000000475 INF: FPGA: Recv ZSGSRD 30184 17-03-17 23:43:09.178 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:43:09.178 -07 000000459 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:43:09.178 -07 000000480 INF: FPGA: Recv ZPIEZORD 26681 17-03-17 23:43:09.188 -07 000000459 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:43:09.188 -07 000000459 INF: Z Motor: Piezo is near 37.0 V (nominally 0 to 100 V), expect near 44.7 V, since DAC is at 4.473 V. Piezo Error = -7.7 V. 17-03-17 23:43:09.188 -07 000000459 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.2 um, Read 10 ADC samples: Avg = 30181 (-133.4 uncal um), Error = 0.8 uncal um, Median = 30181 (-133.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 30178 (-133.4 uncal um), Max = 30185 (-133.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um) 17-03-17 23:43:09.188 -07 000000459 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30181, posNoise = 4, negNoise = 3 17-03-17 23:43:09.188 -07 000000459 INF: Z Motor: After move to -0.134205, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:43:09.188 -07 000000459 INF: Z Motor: Settle wait time = 1455 ms, measure time = 108 ms (allowed 150 ms), total time = 1563 ms 17-03-17 23:43:09.188 -07 000000459 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms 17-03-17 23:43:09.238 -07 000000459 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1741 ms 17-03-17 23:43:09.238 -07 000000459 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 23:43:09.238 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:43:09.238 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:43:09.238 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:43:09.238 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 23:43:09.238 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:43:09.238 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:43:09.238 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-17 23:43:09.238 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 23:43:09.248 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-17 23:43:09.248 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 23:43:09.248 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms. 17-03-17 23:43:09.248 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms. 17-03-17 23:43:09.258 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:43:09.298 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 23:43:09.598 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-17 23:43:09.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-17 23:43:09.598 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 23:43:09.598 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 611574712, 0x0, 559484976) start. 17-03-17 23:43:09.638 -07 000000576 INF: FPGA: Recv @CAMSNAP 380 17-03-17 23:43:09.638 -07 000000433 INF: FPGA: Recv CAMSNAP 17-03-17 23:43:09.638 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 385 ms overall 17-03-17 23:43:09.728 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 611574712, 0x0, 559484976) end. Duration was 126 ms. 17-03-17 23:43:09.728 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:43:09.728 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-17 23:43:09.728 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms. 17-03-17 23:43:09.738 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:43:09.738 -07 000000475 INF: Autofocus start 17-03-17 23:43:09.738 -07 000000475 INF: MeasureProfile start 17-03-17 23:43:09.738 -07 000000433 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:43:09.748 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-17 23:43:09.748 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 23:43:09.748 -07 000000475 INF: MeasureProfile done 17-03-17 23:43:09.748 -07 000000475 INF: X=-96 Z correction [um]=-0.4707136 17-03-17 23:43:09.748 -07 000000475 INF: Autofocus finished 17-03-17 23:43:09.948 -07 000000576 INF: FPGA: Recv FOCMRRIMG 17-03-17 23:43:09.948 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 23:43:09.948 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.01416015625, Z-position -0.134212498661622. ---------- 17-03-17 23:43:09.948 -07 000000610 INF: Cycle 77 Tile 18 Exposure Settings A 1037 G 500 T 500 C 1037 17-03-17 23:43:09.958 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27726, sync = True, waitForSettling = True) 17-03-17 23:43:09.958 -07 000000610 INF: Z Motor: Moving to -0.126921 mm, started at -0.134212 mm, distance = 7.29 um 17-03-17 23:43:09.958 -07 000000610 INF: FPGA: Xmit ZDACW 27726\n [Z Motor] 17-03-17 23:43:09.958 -07 000000486 INF: FPGA: Recv ZDACW 17-03-17 23:43:09.968 -07 000000610 INF: FPGA: 'ZDACW 27726' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:43:09.968 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:43:09.968 -07 000000541 INF: FPGA: Recv ZDACR 27726 17-03-17 23:43:09.978 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:43:09.978 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:43:10.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:43:10.128 -07 000000623 INF: FPGA: Recv ZSGSRD 29046 17-03-17 23:43:10.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:43:10.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:43:10.138 -07 000000475 INF: FPGA: Recv ZSGSRD 29050 17-03-17 23:43:10.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:43:10.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:43:10.148 -07 000000433 INF: FPGA: Recv ZSGSRD 29044 17-03-17 23:43:10.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:43:10.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:43:10.158 -07 000000547 INF: FPGA: Recv ZSGSRD 29050 17-03-17 23:43:10.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:43:10.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:43:10.168 -07 000000627 INF: FPGA: Recv ZSGSRD 29046 17-03-17 23:43:10.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:43:10.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:43:10.178 -07 000000512 INF: FPGA: Recv ZSGSRD 29047 17-03-17 23:43:10.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:43:10.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:43:10.188 -07 000000448 INF: FPGA: Recv ZSGSRD 29048 17-03-17 23:43:10.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:43:10.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:43:10.198 -07 000000433 INF: FPGA: Recv ZSGSRD 29040 17-03-17 23:43:10.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:43:10.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:43:10.208 -07 000000409 INF: FPGA: Recv ZSGSRD 29047 17-03-17 23:43:10.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:43:10.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:43:10.218 -07 000000541 INF: FPGA: Recv ZSGSRD 29052 17-03-17 23:43:10.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:43:10.228 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:43:10.228 -07 000000576 INF: FPGA: Recv ZPIEZORD 25142 17-03-17 23:43:10.238 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:43:10.238 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 42.3 V, since DAC is at 4.231 V. Piezo Error = -8.6 V. 17-03-17 23:43:10.238 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.9 um, Read 10 ADC samples: Avg = 29047 (-126.2 uncal um), Error = 0.8 uncal um, Median = 29047 (-126.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29040 (-126.1 uncal um), Max = 29052 (-126.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um) 17-03-17 23:43:10.238 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29047, posNoise = 5, negNoise = 7 17-03-17 23:43:10.238 -07 000000610 INF: Z Motor: After move to -0.126921, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:43:10.238 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms) 17-03-17 23:43:10.238 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:43:10.238 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:43:10.238 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:43:10.238 -07 000000409 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 23:43:10.238 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:43:10.238 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:43:10.238 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 23:43:10.238 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 23:43:10.238 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:43:10.238 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 23:43:10.238 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-17 23:43:10.238 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 23:43:10.248 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-17 23:43:10.248 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 23:43:10.248 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-17 23:43:10.248 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 23:43:10.258 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms. 17-03-17 23:43:10.258 -07 000000409 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms. 17-03-17 23:43:10.258 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms. 17-03-17 23:43:10.258 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms. 17-03-17 23:43:10.258 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 27903 150\n [Camera] 17-03-17 23:43:10.458 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 23:43:11.498 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229 17-03-17 23:43:11.498 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229 17-03-17 23:43:11.498 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:43:11.498 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229 17-03-17 23:43:11.498 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229 17-03-17 23:43:11.508 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:43:11.508 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:43:11.508 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) start. 17-03-17 23:43:11.508 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:43:11.508 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) start. 17-03-17 23:43:11.688 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27903 1422 17-03-17 23:43:11.838 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572 17-03-17 23:43:11.908 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 639799168, 0x0, 391868352) end. Duration was 398 ms. 17-03-17 23:43:11.908 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms. 17-03-17 23:43:11.908 -07 000000618 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:43:11.908 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1476890328, 0x0, 418435064) end. Duration was 406 ms. 17-03-17 23:43:11.908 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 406 ms. 17-03-17 23:43:11.908 -07 000000547 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:43:11.908 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:43:11.908 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms. 17-03-17 23:43:11.918 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:43:11.918 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms. 17-03-17 23:43:12.098 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:43:12.098 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:43:12.338 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072 17-03-17 23:43:12.338 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072 17-03-17 23:43:12.348 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:43:12.348 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:43:12.348 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start. 17-03-17 23:43:12.348 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072 17-03-17 23:43:12.348 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072 17-03-17 23:43:12.348 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:43:12.348 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:43:12.348 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) start. 17-03-17 23:43:12.538 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 2265 17-03-17 23:43:12.538 -07 000000475 INF: FPGA: Recv CAMDBLSNAP 17-03-17 23:43:12.538 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 27903 150' command took 2 ms to send, 2263 ms to get response, and 2274 ms overall 17-03-17 23:43:12.538 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-17 23:43:12.538 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.01416015625, Z-Position -0.126927442092866. ------ 17-03-17 23:43:12.548 -07 000000486 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13373 mm 17-03-17 23:43:12.548 -07 000000486 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 23:43:12.548 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True) 17-03-17 23:43:12.548 -07 000000623 INF: Y Motor: Moving to 74.8526 mm, started at 74.0142 mm, delta = 0.8384 mm 17-03-17 23:43:12.548 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 29214, sync = True, waitForSettling = False) 17-03-17 23:43:12.548 -07 000000512 INF: Z Motor: Moving to -0.133733 mm, started at -0.126927 mm, distance = -6.81 um 17-03-17 23:43:12.558 -07 000000512 INF: FPGA: Xmit ZDACW 29214\n [Z Motor] 17-03-17 23:43:12.558 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 4.050752, 17-03-17 23:43:12.558 -07 000000433 INF: FPGA: Recv ZDACW 17-03-17 23:43:12.568 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:43:12.568 -07 000000512 INF: FPGA: 'ZDACW 29214' command took 0 ms to send, 0 ms to get response, and 14 ms overall 17-03-17 23:43:12.568 -07 000000541 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:43:12.578 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:43:12.578 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-17 23:43:12.578 -07 000000438 INF: FPGA: Recv YRDPOS 151581 17-03-17 23:43:12.588 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 35 ms overall 17-03-17 23:43:12.588 -07 000000623 INF: Y Motor: Encoder = 151581 = motor step 118422.7 = 74.0142 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:43:12.588 -07 000000623 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 23:43:12.588 -07 000000623 INF: Y Motor: Moving 1342 steps-17 17-03-17 23:43:12.598 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:43:12.598 -07 000000409 INF: FPGA: Recv ZDACR 29214 17-03-17 23:43:12.608 -07 000000459 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 23:43:12.608 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 39 ms overall 17-03-17 23:43:12.608 -07 000000512 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet)) 17-03-17 23:43:12.618 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 23:43:12.738 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 395 ms. 17-03-17 23:43:12.738 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms. 17-03-17 23:43:12.738 -07 000000627 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:43:12.738 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 1130172064, 0x0, 418435064) end. Duration was 396 ms. 17-03-17 23:43:12.748 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms. 17-03-17 23:43:12.748 -07 000000547 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:43:12.748 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:43:12.748 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms. 17-03-17 23:43:12.748 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms. 17-03-17 23:43:12.758 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms. 17-03-17 23:43:12.808 -07 000000576 INF: FPGA: Recv FOCMRRFOC 17-03-17 23:43:12.808 -07 000000459 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 232 ms overall 17-03-17 23:43:12.988 -07 000000482 INF: FPGA: Recv YMVTILE 17-03-17 23:43:12.988 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 407 ms overall 17-03-17 23:43:13.018 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:43:13.018 -07 000000448 INF: FPGA: Recv YRDPOS 153268 17-03-17 23:43:13.028 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-17 23:43:13.028 -07 000000623 INF: Y Motor: Encoder = 153268 = motor step 119740.6 = 74.8379 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:43:13.028 -07 000000623 INF: Y Motor: Position error before settling (table move) = -30 encoder counts (-0.015 mm) 17-03-17 23:43:13.028 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 407 ms, distance = 0.838 mm, average velocity = 2.060 mm/sec 17-03-17 23:43:13.978 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:43:13.978 -07 000000512 INF: FPGA: Recv YRDPOS 153268 17-03-17 23:43:13.988 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:43:13.988 -07 000000623 INF: Y Motor: Encoder = 153268 = motor step 119740.6 = 74.8379 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:43:13.998 -07 000000623 INF: Y Motor: After move to 74.852608, error = -0.014717, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 23:43:13.998 -07 000000623 INF: Y Motor: Position error after settling (table move) = -30 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm) 17-03-17 23:43:13.998 -07 000000623 INF: Y Motor: Moved to 74.8379 after 1453 ms (table move) 17-03-17 23:43:14.008 -07 000000486 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133733 mm (DAC = 29214) 17-03-17 23:43:14.008 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:43:14.008 -07 000000512 INF: FPGA: Recv ZSGSRD 30105 17-03-17 23:43:14.018 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:43:14.018 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:43:14.018 -07 000000480 INF: FPGA: Recv ZSGSRD 30117 17-03-17 23:43:14.028 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:43:14.028 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:43:14.028 -07 000000448 INF: FPGA: Recv ZSGSRD 30112 17-03-17 23:43:14.038 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:43:14.038 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:43:14.038 -07 000000541 INF: FPGA: Recv ZSGSRD 30103 17-03-17 23:43:14.048 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:43:14.048 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:43:14.048 -07 000000438 INF: FPGA: Recv ZSGSRD 30108 17-03-17 23:43:14.058 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:43:14.058 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:43:14.058 -07 000000409 INF: FPGA: Recv ZSGSRD 30102 17-03-17 23:43:14.068 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:43:14.068 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:43:14.068 -07 000000480 INF: FPGA: Recv ZSGSRD 30115 17-03-17 23:43:14.078 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:43:14.078 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:43:14.078 -07 000000448 INF: FPGA: Recv ZSGSRD 30099 17-03-17 23:43:14.088 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:43:14.088 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:43:14.088 -07 000000512 INF: FPGA: Recv ZSGSRD 30108 17-03-17 23:43:14.098 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:43:14.098 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:43:14.098 -07 000000459 INF: FPGA: Recv ZSGSRD 30110 17-03-17 23:43:14.108 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:43:14.108 -07 000000486 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:43:14.108 -07 000000576 INF: FPGA: Recv ZPIEZORD 26558 17-03-17 23:43:14.118 -07 000000486 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:43:14.118 -07 000000486 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 44.6 V, since DAC is at 4.458 V. Piezo Error = -7.8 V. 17-03-17 23:43:14.118 -07 000000486 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.7 um, Read 10 ADC samples: Avg = 30108 (-133.0 uncal um), Error = 0.8 uncal um, Median = 30108 (-133.0 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30099 (-132.9 uncal um), Max = 30117 (-133.0 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um) 17-03-17 23:43:14.118 -07 000000486 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30108, posNoise = 9, negNoise = 9 17-03-17 23:43:14.118 -07 000000486 INF: Z Motor: After move to -0.133733, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:43:14.118 -07 000000486 INF: Z Motor: Settle wait time = 1456 ms, measure time = 108 ms (allowed 150 ms), total time = 1564 ms 17-03-17 23:43:14.118 -07 000000486 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms 17-03-17 23:43:14.168 -07 000000486 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1619 ms 17-03-17 23:43:14.168 -07 000000486 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 23:43:14.168 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:43:14.168 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:43:14.168 -07 000000409 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:43:14.168 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 23:43:14.168 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:43:14.168 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:43:14.168 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:43:14.168 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 23:43:14.178 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms. 17-03-17 23:43:14.178 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 23:43:14.188 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms. 17-03-17 23:43:14.188 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms. 17-03-17 23:43:14.188 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:43:14.228 -07 000000547 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 23:43:14.528 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-17 23:43:14.528 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-17 23:43:14.528 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 23:43:14.528 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) start. 17-03-17 23:43:14.568 -07 000000512 INF: FPGA: Recv @CAMSNAP 380 17-03-17 23:43:14.568 -07 000000576 INF: FPGA: Recv CAMSNAP 17-03-17 23:43:14.568 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall 17-03-17 23:43:14.658 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 1512312592, 0x0, 559484976) end. Duration was 126 ms. 17-03-17 23:43:14.658 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:43:14.658 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 1 ms. 17-03-17 23:43:14.658 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms. 17-03-17 23:43:14.768 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:43:14.768 -07 000000448 INF: Autofocus start 17-03-17 23:43:14.768 -07 000000448 INF: MeasureProfile start 17-03-17 23:43:14.768 -07 000000618 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:43:14.778 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 23:43:14.778 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 23:43:14.778 -07 000000448 INF: MeasureProfile done 17-03-17 23:43:14.778 -07 000000448 INF: X=-137 Z correction [um]=-0.6702942 17-03-17 23:43:14.778 -07 000000448 INF: Autofocus finished 17-03-17 23:43:14.978 -07 000000502 INF: FPGA: Recv FOCMRRIMG 17-03-17 23:43:14.978 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 23:43:14.978 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.837890625, Z-position -0.133743531175274. ---------- 17-03-17 23:43:14.978 -07 000000610 INF: Cycle 77 Tile 19 Exposure Settings A 1037 G 500 T 500 C 1037 17-03-17 23:43:14.978 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27580, sync = True, waitForSettling = True) 17-03-17 23:43:14.978 -07 000000610 INF: Z Motor: Moving to -0.126253 mm, started at -0.133744 mm, distance = 7.49 um 17-03-17 23:43:14.988 -07 000000610 INF: FPGA: Xmit ZDACW 27580\n [Z Motor] 17-03-17 23:43:14.988 -07 000000433 INF: FPGA: Recv ZDACW 17-03-17 23:43:14.998 -07 000000610 INF: FPGA: 'ZDACW 27580' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:43:14.998 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:43:14.998 -07 000000618 INF: FPGA: Recv ZDACR 27580 17-03-17 23:43:15.008 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:43:15.008 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:43:15.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:43:15.158 -07 000000433 INF: FPGA: Recv ZSGSRD 28946 17-03-17 23:43:15.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:43:15.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:43:15.168 -07 000000480 INF: FPGA: Recv ZSGSRD 28944 17-03-17 23:43:15.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:43:15.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:43:15.178 -07 000000448 INF: FPGA: Recv ZSGSRD 28942 17-03-17 23:43:15.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:43:15.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:43:15.188 -07 000000502 INF: FPGA: Recv ZSGSRD 28943 17-03-17 23:43:15.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:43:15.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:43:15.198 -07 000000547 INF: FPGA: Recv ZSGSRD 28945 17-03-17 23:43:15.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:43:15.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:43:15.208 -07 000000433 INF: FPGA: Recv ZSGSRD 28948 17-03-17 23:43:15.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:43:15.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:43:15.218 -07 000000627 INF: FPGA: Recv ZSGSRD 28939 17-03-17 23:43:15.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:43:15.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:43:15.228 -07 000000482 INF: FPGA: Recv ZSGSRD 28946 17-03-17 23:43:15.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 23:43:15.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:43:15.238 -07 000000502 INF: FPGA: Recv ZSGSRD 28942 17-03-17 23:43:15.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:43:15.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:43:15.248 -07 000000547 INF: FPGA: Recv ZSGSRD 28941 17-03-17 23:43:15.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:43:15.258 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:43:15.258 -07 000000541 INF: FPGA: Recv ZPIEZORD 25033 17-03-17 23:43:15.268 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:43:15.268 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 42.1 V, since DAC is at 4.208 V. Piezo Error = -8.6 V. 17-03-17 23:43:15.268 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.3 um, Read 10 ADC samples: Avg = 28944 (-125.5 uncal um), Error = 0.8 uncal um, Median = 28944 (-125.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 28939 (-125.5 uncal um), Max = 28948 (-125.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-17 23:43:15.268 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 28944, posNoise = 4, negNoise = 5 17-03-17 23:43:15.268 -07 000000610 INF: Z Motor: After move to -0.126253, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:43:15.268 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms) 17-03-17 23:43:15.268 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:43:15.268 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:43:15.268 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:43:15.268 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:43:15.268 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 23:43:15.268 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:43:15.268 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 23:43:15.268 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 23:43:15.268 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms. 17-03-17 23:43:15.268 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 23:43:15.268 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms. 17-03-17 23:43:15.268 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 23:43:15.278 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms. 17-03-17 23:43:15.278 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 23:43:15.278 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-17 23:43:15.278 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 23:43:15.288 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms. 17-03-17 23:43:15.288 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms. 17-03-17 23:43:15.288 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms. 17-03-17 23:43:15.288 -07 000000448 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms. 17-03-17 23:43:15.298 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 27757 150\n [Camera] 17-03-17 23:43:15.498 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 23:43:16.528 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229 17-03-17 23:43:16.528 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229 17-03-17 23:43:16.528 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:43:16.528 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:43:16.528 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 1174404936, 0x0, 391868352) start. 17-03-17 23:43:16.538 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229 17-03-17 23:43:16.538 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229 17-03-17 23:43:16.538 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:43:16.538 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:43:16.538 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start. 17-03-17 23:43:16.728 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27757 1422 17-03-17 23:43:16.878 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572 17-03-17 23:43:16.928 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 1174404936, 0x0, 391868352) end. Duration was 395 ms. 17-03-17 23:43:16.928 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms. 17-03-17 23:43:16.928 -07 000000409 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:43:16.928 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:43:16.928 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms. 17-03-17 23:43:16.928 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 397 ms. 17-03-17 23:43:16.928 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms. 17-03-17 23:43:16.928 -07 000000486 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:43:16.938 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:43:16.938 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms. 17-03-17 23:43:17.098 -07 000000459 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:43:17.098 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 76. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:43:17.378 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072 17-03-17 23:43:17.378 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072 17-03-17 23:43:17.378 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:43:17.378 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:43:17.378 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) start. 17-03-17 23:43:17.378 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072 17-03-17 23:43:17.378 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072 17-03-17 23:43:17.378 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:43:17.378 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:43:17.378 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start. 17-03-17 23:43:17.568 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP 2265 17-03-17 23:43:17.568 -07 000000618 INF: FPGA: Recv CAMDBLSNAP 17-03-17 23:43:17.568 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 27757 150' command took 2 ms to send, 2262 ms to get response, and 2272 ms overall 17-03-17 23:43:17.778 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2182910056, 0x0, 391868352) end. Duration was 405 ms. 17-03-17 23:43:17.778 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms. 17-03-17 23:43:17.778 -07 000000502 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:43:17.778 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 403 ms. 17-03-17 23:43:17.778 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms. 17-03-17 23:43:17.778 -07 000000482 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:43:17.788 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:43:17.788 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms. 17-03-17 23:43:17.788 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms. 17-03-17 23:43:17.788 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start. 17-03-17 23:43:17.788 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms. 17-03-17 23:43:17.828 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms. 17-03-17 23:43:17.828 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start. 17-03-17 23:43:17.878 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms. 17-03-17 23:43:18.008 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 4.079272, 17-03-17 23:43:18.008 -07 000000610 INF: Enabling Skipping AutoFocus in the next 0 cycles. 17-03-17 23:43:18.008 -07 000000610 INF: Imaging Cycle 77: ScanTilesCommand Cycle 77 time end. Duration was 331731 ms. 17-03-17 23:43:18.008 -07 000000610 INF: =================== Cycle #77 =================== 17-03-17 23:43:18.008 -07 000000610 INF: =================== =================== 17-03-17 23:43:18.018 -07 000000482 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED] 17-03-17 23:43:18.018 -07 000000486 INF: FPGA: Recv EXLED1ADCR 25 17-03-17 23:43:18.028 -07 000000482 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 14 ms overall 17-03-17 23:43:18.028 -07 000000482 INF: GreenLED: Using Green data: Photodiode ADC 25 --> 0.0 mW (old method), or 1.8 mW (new method). Difference = 1.8 mW 17-03-17 23:43:18.028 -07 000000482 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 77, FrontChillerTemperature: 4.079272, FrontChillerHeatSinkTemperature: 0.299181, AmbientTemperature: 18.44811, FlowCellCompartmentTemperature: 22.00708, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 17.79583, GreenLEDSensorTemperature: 30.31094, PhotodiodePowerAdcGreen: 25, PhotodiodePowerMwGreen: 1.835864 17-03-17 23:43:18.068 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.