17-03-17 23:43:18.128 -07 000000610 INF: =================== Cycle #78 =================== 17-03-17 23:43:18.128 -07 000000610 INF: Y Motor: Entering MoveAbsStepped (target = 120609 steps, sync = True, waitForSettling = True) 17-03-17 23:43:18.128 -07 000000610 INF: Y Motor: Moving to 75.3806 mm, started at 74.8379 mm, delta = 0.5427 mm 17-03-17 23:43:18.128 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:43:18.128 -07 000000576 INF: FPGA: Recv YRDPOS 153268 17-03-17 23:43:18.138 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 23:43:18.138 -07 000000610 INF: Y Motor: Encoder = 153268 = motor step 119740.6 = 74.8379 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:43:18.138 -07 000000610 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = 0.5280 mm (844.8 steps). UsingTableMove = False 17-03-17 23:43:18.138 -07 000000610 INF: Y Motor: Moving to 154379 encoder counts 17-03-17 23:43:18.138 -07 000000610 INF: FPGA: Xmit YMVTO 154379\n [Y Motor] 17-03-17 23:43:18.248 -07 000000433 INF: FPGA: Recv YMVTO 154377 863 17-03-17 23:43:18.248 -07 000000610 INF: FPGA: 'YMVTO 154379' command took 0 ms to send, 109 ms to get response, and 119 ms overall 17-03-17 23:43:18.248 -07 000000610 INF: Y Motor: Position error before settling = -2 encoder counts (-0.001 mm) 17-03-17 23:43:18.248 -07 000000610 INF: Y Motor: To move from 74.838 to 75.381 (0.543 mm) should take 868 steps, but required 863 steps (0.539 mm). Slippage = -0.003 mm (-0.01%). 17-03-17 23:43:18.258 -07 000000610 INF: Y Motor: FPGA move command 'YMVTO 154379' took 119 ms, distance = 0.543 mm, average velocity = 4.560 mm/sec 17-03-17 23:43:21.258 -07 000000610 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:43:21.258 -07 000000409 INF: FPGA: Recv YRDPOS 154380 17-03-17 23:43:21.268 -07 000000610 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:43:21.268 -07 000000610 INF: Y Motor: Encoder = 154380 = motor step 120609.4 = 75.3809 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:43:21.288 -07 000000610 INF: Y Motor: After move to 75.380580, error = 0.000279, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 23:43:21.288 -07 000000610 INF: Y Motor: Position error after settling = 1 encoder counts (0.000 mm), Delta during settling = 3 counts (0.001 mm) 17-03-17 23:43:21.288 -07 000000610 INF: Y Motor: Moved to 75.3809 after 3163 ms 17-03-17 23:43:21.298 -07 000000610 INF: =================== Cycle #78, Flow Cell Temp 60° =================== 17-03-17 23:43:21.298 -07 000000610 INF: =================== Cycle #78, Flow Cell Temp 60°, FC temperature to 60° =================== 17-03-17 23:43:21.298 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 60000000\n [FlowCellTempControl] 17-03-17 23:43:21.298 -07 000000433 INF: FPGA: Recv TEC2TEMP 17-03-17 23:43:21.308 -07 000000610 INF: FPGA: 'TEC2TEMP 0 60000000' command took 1 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:43:21.308 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl] 17-03-17 23:43:21.308 -07 000000482 INF: FPGA: Recv TEC2EN 17-03-17 23:43:21.318 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:43:21.318 -07 000000610 INF: =================== Cycle #78, Flow Cell Temp 60° =================== 17-03-17 23:43:21.318 -07 000000610 INF: =================== Cycle #78 =================== 17-03-17 23:43:21.318 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start 17-03-17 23:43:21.318 -07 000000610 INF: ReagentValve: Xmit S\r 17-03-17 23:43:21.348 -07 000000610 INF: ReagentValve: Recv 18\r 17-03-17 23:43:21.348 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 24 to 3. Moving 3 positions. 17-03-17 23:43:21.348 -07 000000610 INF: ReagentValve: Xmit +03\r 17-03-17 23:43:21.648 -07 000000610 INF: ReagentValve: Xmit B\r 17-03-17 23:43:21.668 -07 000000610 INF: ReagentValve: Recv 0278\r 17-03-17 23:43:21.668 -07 000000610 INF: ReagentValve: Move+ from 24 to 3 took 632 steps, expected 612. Error = 20 steps (3.3%) 17-03-17 23:43:21.718 -07 000000610 INF: ReagentValve: Xmit S\r 17-03-17 23:43:21.738 -07 000000610 INF: ReagentValve: Recv 03\r 17-03-17 23:43:21.738 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating 17-03-17 23:43:21.838 -07 000000610 INF: =================== Cycle #78, Pumping Reagent PR2 (3) =================== 17-03-17 23:43:21.838 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1 17-03-17 23:43:21.838 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-17 23:43:21.868 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n 17-03-17 23:43:21.868 -07 000000610 INF: LanePump: Current Position of Pump is: 0 17-03-17 23:43:21.868 -07 000000610 INF: =================== Cycle #78, Pumping Reagent PR2 (3), Aspirating port InputPort =================== 17-03-17 23:43:21.998 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r 17-03-17 23:43:22.038 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-17 23:43:22.098 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:43:22.098 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 77. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:43:23.378 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 78, FrontChillerTemperature: 4.024884, 17-03-17 23:43:25.168 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-17 23:43:25.198 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-17 23:43:25.618 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-17 23:43:25.648 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-17 23:43:26.068 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-17 23:43:26.098 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 23:43:26.098 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete 17-03-17 23:43:26.098 -07 000000610 INF: =================== Cycle #78, Pumping Reagent PR2 (3) =================== 17-03-17 23:43:26.228 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-17 23:43:26.258 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n 17-03-17 23:43:26.258 -07 000000610 INF: LanePump: Current Position of Pump is: 720 17-03-17 23:43:26.388 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-17 23:43:26.418 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n 17-03-17 23:43:26.418 -07 000000610 INF: LanePump: Current Position of Pump is: 720 17-03-17 23:43:26.418 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution 17-03-17 23:43:26.548 -07 000000610 INF: LanePump: Xmit /1IR\r 17-03-17 23:43:26.578 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 23:43:27.008 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-17 23:43:27.038 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 23:43:27.038 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete 17-03-17 23:43:27.038 -07 000000610 INF: =================== Cycle #78 =================== 17-03-17 23:43:27.098 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:43:27.098 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 77. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:43:28.258 -07 000000610 INF: AsyncDelayTimer waited 1219ms 17-03-17 23:43:28.258 -07 000000610 INF: ReagentValve: Go to position 4 - PumpToFlowcell start 17-03-17 23:43:28.258 -07 000000610 INF: ReagentValve: Xmit S\r 17-03-17 23:43:28.278 -07 000000610 INF: ReagentValve: Recv 03\r 17-03-17 23:43:28.278 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 3 to 4. Moving 1 positions. 17-03-17 23:43:28.278 -07 000000610 INF: ReagentValve: Xmit +04\r 17-03-17 23:43:28.408 -07 000000610 INF: ReagentValve: Xmit B\r 17-03-17 23:43:28.428 -07 000000610 INF: ReagentValve: Recv 00CD\r 17-03-17 23:43:28.428 -07 000000610 INF: ReagentValve: Move+ from 3 to 4 took 205 steps, expected 204. Error = 1 steps (0.5%) 17-03-17 23:43:28.478 -07 000000610 INF: ReagentValve: Xmit S\r 17-03-17 23:43:28.498 -07 000000610 INF: ReagentValve: Recv 04\r 17-03-17 23:43:28.498 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating 17-03-17 23:43:28.598 -07 000000610 INF: =================== Cycle #78, Pumping Reagent CMS (4) =================== 17-03-17 23:43:28.598 -07 000000610 INF: LanePump: Pumping from 4, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1 17-03-17 23:43:28.598 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-17 23:43:28.628 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n 17-03-17 23:43:28.628 -07 000000610 INF: LanePump: Current Position of Pump is: 720 17-03-17 23:43:28.628 -07 000000610 INF: =================== Cycle #78, Pumping Reagent CMS (4), Aspirating port InputPort =================== 17-03-17 23:43:28.738 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 78, FrontChillerTemperature: 4.030322, 17-03-17 23:43:28.758 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r 17-03-17 23:43:28.798 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-17 23:43:30.238 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-17 23:43:30.268 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-17 23:43:30.688 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-17 23:43:30.718 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 23:43:30.718 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete 17-03-17 23:43:30.718 -07 000000610 INF: =================== Cycle #78, Pumping Reagent CMS (4) =================== 17-03-17 23:43:30.848 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-17 23:43:30.878 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n 17-03-17 23:43:30.878 -07 000000610 INF: LanePump: Current Position of Pump is: 990 17-03-17 23:43:31.008 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-17 23:43:31.038 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n 17-03-17 23:43:31.038 -07 000000610 INF: LanePump: Current Position of Pump is: 990 17-03-17 23:43:31.038 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution 17-03-17 23:43:31.168 -07 000000610 INF: LanePump: Xmit /1IR\r 17-03-17 23:43:31.198 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 23:43:31.628 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-17 23:43:31.658 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 23:43:31.658 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete 17-03-17 23:43:31.658 -07 000000610 INF: =================== Cycle #78 =================== 17-03-17 23:43:32.098 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:43:32.098 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 77. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:43:32.878 -07 000000610 INF: AsyncDelayTimer waited 1218ms 17-03-17 23:43:32.878 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start 17-03-17 23:43:32.878 -07 000000610 INF: ReagentValve: Xmit S\r 17-03-17 23:43:32.898 -07 000000610 INF: ReagentValve: Recv 04\r 17-03-17 23:43:32.898 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 4 to 3. Moving 1 positions. 17-03-17 23:43:32.898 -07 000000610 INF: ReagentValve: Xmit -03\r 17-03-17 23:43:33.048 -07 000000610 INF: ReagentValve: Xmit B\r 17-03-17 23:43:33.068 -07 000000610 INF: ReagentValve: Recv 00E1\r 17-03-17 23:43:33.068 -07 000000610 INF: ReagentValve: Move- from 4 to 3 took 225 steps, expected 204. Error = 21 steps (10.3%) 17-03-17 23:43:33.118 -07 000000610 INF: ReagentValve: Xmit S\r 17-03-17 23:43:33.138 -07 000000610 INF: ReagentValve: Recv 03\r 17-03-17 23:43:33.138 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating 17-03-17 23:43:33.238 -07 000000610 INF: =================== Cycle #78, Pumping Reagent PR2 (3) =================== 17-03-17 23:43:33.238 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1 17-03-17 23:43:33.238 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-17 23:43:33.268 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n 17-03-17 23:43:33.268 -07 000000610 INF: LanePump: Current Position of Pump is: 990 17-03-17 23:43:33.268 -07 000000610 INF: =================== Cycle #78, Pumping Reagent PR2 (3), Aspirating port InputPort =================== 17-03-17 23:43:33.398 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r 17-03-17 23:43:33.438 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-17 23:43:34.098 -07 000000541 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 78, FrontChillerTemperature: 3.981281, 17-03-17 23:43:34.308 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-17 23:43:34.338 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 23:43:34.338 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete 17-03-17 23:43:34.338 -07 000000610 INF: =================== Cycle #78, Pumping Reagent PR2 (3) =================== 17-03-17 23:43:34.468 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-17 23:43:34.498 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n 17-03-17 23:43:34.498 -07 000000610 INF: LanePump: Current Position of Pump is: 1110 17-03-17 23:43:34.628 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-17 23:43:34.658 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n 17-03-17 23:43:34.658 -07 000000610 INF: LanePump: Current Position of Pump is: 1110 17-03-17 23:43:34.658 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution 17-03-17 23:43:34.788 -07 000000610 INF: LanePump: Xmit /1IR\r 17-03-17 23:43:34.818 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 23:43:35.248 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-17 23:43:35.278 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 23:43:35.278 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete 17-03-17 23:43:35.278 -07 000000610 INF: =================== Cycle #78 =================== 17-03-17 23:43:35.278 -07 000000480 INF: =================== Dispense to DispenseAndWait =================== 17-03-17 23:43:35.278 -07 000000482 INF: WaitCommand(10000) start 17-03-17 23:43:35.278 -07 000000480 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort =================== 17-03-17 23:43:36.498 -07 000000480 INF: AsyncDelayTimer waited 1215ms 17-03-17 23:43:36.498 -07 000000480 INF: LanePump: Xmit /1?\r 17-03-17 23:43:36.528 -07 000000480 INF: LanePump: Recv /0`1110(0x03)\r\n 17-03-17 23:43:36.528 -07 000000480 INF: LanePump: Current Position of Pump is: 1110 17-03-17 23:43:36.658 -07 000000480 INF: LanePump: Xmit /1V1500OA0R\r 17-03-17 23:43:36.698 -07 000000480 INF: LanePump: Recv /0@(0x03)\r\n 17-03-17 23:43:37.098 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:43:37.098 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 77. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:43:38.228 -07 000000480 INF: LanePump: Xmit /1Q\r 17-03-17 23:43:38.258 -07 000000480 INF: LanePump: Recv /0@(0x03)\r\n 17-03-17 23:43:38.678 -07 000000480 INF: LanePump: Xmit /1Q\r 17-03-17 23:43:38.708 -07 000000480 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 23:43:38.708 -07 000000480 INF: LanePump: Waited 2009 ms for pump motion to complete 17-03-17 23:43:38.708 -07 000000480 INF: =================== Dispense to DispenseAndWait =================== 17-03-17 23:43:38.708 -07 000000480 INF: =================== =================== 17-03-17 23:43:39.458 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 78, FrontChillerTemperature: 3.962185, 17-03-17 23:43:42.098 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:43:42.098 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 77. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:43:44.818 -07 000000459 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 78, FrontChillerTemperature: 3.956714, 17-03-17 23:43:45.288 -07 000000482 INF: WaitCommand(10000) end 17-03-17 23:43:45.288 -07 000000610 INF: =================== Cycle #78, Pumping Reagent PR2 (3) =================== 17-03-17 23:43:45.288 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 250 µL, calling command Pumping to Flow Cell #1 17-03-17 23:43:45.288 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-17 23:43:45.318 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n 17-03-17 23:43:45.318 -07 000000610 INF: LanePump: Current Position of Pump is: 0 17-03-17 23:43:45.318 -07 000000610 INF: =================== Cycle #78, Pumping Reagent PR2 (3), Aspirating port InputPort =================== 17-03-17 23:43:45.448 -07 000000610 INF: LanePump: Xmit /1V400IP1500R\r 17-03-17 23:43:45.488 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-17 23:43:47.098 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:43:47.098 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 77. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1268, R2=1319, Total=2587. Warn if over 250 bubbles per interval. 17-03-17 23:43:50.178 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 78, FrontChillerTemperature: 3.988112, 17-03-17 23:43:51.618 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-17 23:43:51.648 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-17 23:43:52.068 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-17 23:43:52.098 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-17 23:43:52.098 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1 17-03-17 23:43:52.098 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 77. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1269, R2=1320, Total=2589. Warn if over 250 bubbles per interval. 17-03-17 23:43:52.518 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-17 23:43:52.548 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-17 23:43:52.968 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-17 23:43:52.998 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-17 23:43:53.418 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-17 23:43:53.448 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 23:43:53.448 -07 000000610 INF: LanePump: Waited 7959 ms for pump motion to complete 17-03-17 23:43:53.448 -07 000000610 INF: =================== Cycle #78, Pumping Reagent PR2 (3) =================== 17-03-17 23:43:53.578 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-17 23:43:53.608 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n 17-03-17 23:43:53.608 -07 000000610 INF: LanePump: Current Position of Pump is: 1500 17-03-17 23:43:53.738 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-17 23:43:53.768 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n 17-03-17 23:43:53.768 -07 000000610 INF: LanePump: Current Position of Pump is: 1500 17-03-17 23:43:53.768 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution 17-03-17 23:43:53.898 -07 000000610 INF: LanePump: Xmit /1IR\r 17-03-17 23:43:53.928 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 23:43:54.358 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-17 23:43:54.388 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 23:43:54.388 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete 17-03-17 23:43:54.388 -07 000000610 INF: =================== Cycle #78 =================== 17-03-17 23:43:55.538 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 78, FrontChillerTemperature: 3.988112, 17-03-17 23:43:55.608 -07 000000610 INF: AsyncDelayTimer waited 1217ms 17-03-17 23:43:55.608 -07 000000610 INF: ReagentValve: Go to position 1 - PumpToFlowcell start 17-03-17 23:43:55.608 -07 000000610 INF: ReagentValve: Xmit S\r 17-03-17 23:43:55.628 -07 000000610 INF: ReagentValve: Recv 03\r 17-03-17 23:43:55.628 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 1. Moving 2 positions. 17-03-17 23:43:55.628 -07 000000610 INF: ReagentValve: Xmit -01\r 17-03-17 23:43:55.838 -07 000000610 INF: ReagentValve: Xmit B\r 17-03-17 23:43:55.858 -07 000000610 INF: ReagentValve: Recv 0198\r 17-03-17 23:43:55.858 -07 000000610 INF: ReagentValve: Move- from 3 to 1 took 408 steps, expected 408. Error = 0 steps (0.0%) 17-03-17 23:43:55.908 -07 000000610 INF: ReagentValve: Xmit S\r 17-03-17 23:43:55.928 -07 000000610 INF: ReagentValve: Recv 01\r 17-03-17 23:43:55.928 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating 17-03-17 23:43:56.028 -07 000000610 INF: =================== Cycle #78, Pumping Reagent IMT (1) =================== 17-03-17 23:43:56.028 -07 000000610 INF: LanePump: Pumping from 1, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1 17-03-17 23:43:56.028 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-17 23:43:56.058 -07 000000610 INF: LanePump: Recv /0`1500(0x03)\r\n 17-03-17 23:43:56.058 -07 000000610 INF: LanePump: Current Position of Pump is: 1500 17-03-17 23:43:56.058 -07 000000610 INF: =================== Cycle #78, Pumping Reagent IMT (1), Aspirating port InputPort =================== 17-03-17 23:43:56.188 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r 17-03-17 23:43:56.228 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-17 23:43:57.098 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:43:57.098 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 77. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1269, R2=1320, Total=2589. Warn if over 250 bubbles per interval. 17-03-17 23:43:57.668 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-17 23:43:57.698 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-17 23:43:58.118 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-17 23:43:58.148 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 23:43:58.148 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete 17-03-17 23:43:58.148 -07 000000610 INF: =================== Cycle #78, Pumping Reagent IMT (1) =================== 17-03-17 23:43:58.278 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-17 23:43:58.308 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n 17-03-17 23:43:58.308 -07 000000610 INF: LanePump: Current Position of Pump is: 1770 17-03-17 23:43:58.438 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-17 23:43:58.468 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n 17-03-17 23:43:58.468 -07 000000610 INF: LanePump: Current Position of Pump is: 1770 17-03-17 23:43:58.468 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution 17-03-17 23:43:58.598 -07 000000610 INF: LanePump: Xmit /1IR\r 17-03-17 23:43:58.628 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 23:43:59.058 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-17 23:43:59.088 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 23:43:59.088 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete 17-03-17 23:43:59.088 -07 000000610 INF: =================== Cycle #78 =================== 17-03-17 23:44:00.308 -07 000000610 INF: AsyncDelayTimer waited 1218ms 17-03-17 23:44:00.308 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start 17-03-17 23:44:00.308 -07 000000610 INF: ReagentValve: Xmit S\r 17-03-17 23:44:00.328 -07 000000610 INF: ReagentValve: Recv 01\r 17-03-17 23:44:00.328 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 1 to 3. Moving 2 positions. 17-03-17 23:44:00.328 -07 000000610 INF: ReagentValve: Xmit +03\r 17-03-17 23:44:00.558 -07 000000610 INF: ReagentValve: Xmit B\r 17-03-17 23:44:00.578 -07 000000610 INF: ReagentValve: Recv 01AC\r 17-03-17 23:44:00.578 -07 000000610 INF: ReagentValve: Move+ from 1 to 3 took 428 steps, expected 408. Error = 20 steps (4.9%) 17-03-17 23:44:00.628 -07 000000610 INF: ReagentValve: Xmit S\r 17-03-17 23:44:00.648 -07 000000610 INF: ReagentValve: Recv 03\r 17-03-17 23:44:00.648 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating 17-03-17 23:44:00.748 -07 000000610 INF: =================== Cycle #78, Pumping Reagent PR2 (3) =================== 17-03-17 23:44:00.748 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1 17-03-17 23:44:00.748 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-17 23:44:00.778 -07 000000610 INF: LanePump: Recv /0`1770(0x03)\r\n 17-03-17 23:44:00.778 -07 000000610 INF: LanePump: Current Position of Pump is: 1770 17-03-17 23:44:00.778 -07 000000610 INF: =================== Cycle #78, Pumping Reagent PR2 (3), Aspirating port InputPort =================== 17-03-17 23:44:00.898 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 78, FrontChillerTemperature: 4.005817, 17-03-17 23:44:00.908 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r 17-03-17 23:44:00.948 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-17 23:44:01.818 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-17 23:44:01.848 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 23:44:01.848 -07 000000610 INF: LanePump: Waited 900 ms for pump motion to complete 17-03-17 23:44:01.848 -07 000000610 INF: =================== Cycle #78, Pumping Reagent PR2 (3) =================== 17-03-17 23:44:01.978 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-17 23:44:02.008 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n 17-03-17 23:44:02.008 -07 000000610 INF: LanePump: Current Position of Pump is: 1890 17-03-17 23:44:02.098 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:44:02.098 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 77. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1269, R2=1320, Total=2589. Warn if over 250 bubbles per interval. 17-03-17 23:44:02.138 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-17 23:44:02.168 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n 17-03-17 23:44:02.168 -07 000000610 INF: LanePump: Current Position of Pump is: 1890 17-03-17 23:44:02.168 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution 17-03-17 23:44:02.298 -07 000000610 INF: LanePump: Xmit /1IR\r 17-03-17 23:44:02.328 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 23:44:02.758 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-17 23:44:02.788 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 23:44:02.788 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete 17-03-17 23:44:02.788 -07 000000610 INF: =================== Cycle #78 =================== 17-03-17 23:44:02.788 -07 000000610 INF: =================== Cycle #78, Flow Cell Temp 65° =================== 17-03-17 23:44:02.788 -07 000000610 INF: =================== Cycle #78, Flow Cell Temp 65°, FC temperature to 65° =================== 17-03-17 23:44:02.788 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 65000000\n [FlowCellTempControl] 17-03-17 23:44:02.788 -07 000000438 INF: FPGA: Recv TEC2TEMP 17-03-17 23:44:02.798 -07 000000610 INF: FPGA: 'TEC2TEMP 0 65000000' command took 1 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 23:44:02.798 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl] 17-03-17 23:44:02.798 -07 000000561 INF: FPGA: Recv TEC2EN 17-03-17 23:44:02.808 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:44:02.808 -07 000000610 INF: =================== Cycle #78, Flow Cell Temp 65° =================== 17-03-17 23:44:02.808 -07 000000610 INF: =================== Cycle #78 =================== 17-03-17 23:44:02.808 -07 000000610 INF: WaitCommand(30000) start 17-03-17 23:44:06.258 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 78, FrontChillerTemperature: 4.004458, 17-03-17 23:44:07.098 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:44:07.098 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 77. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1269, R2=1320, Total=2589. Warn if over 250 bubbles per interval. 17-03-17 23:44:11.618 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 78, FrontChillerTemperature: 3.985358, 17-03-17 23:44:12.098 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:44:12.098 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 77. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1269, R2=1320, Total=2589. Warn if over 250 bubbles per interval. 17-03-17 23:44:16.978 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 78, FrontChillerTemperature: 4.000345, 17-03-17 23:44:17.098 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:44:17.098 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 77. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1269, R2=1320, Total=2589. Warn if over 250 bubbles per interval. 17-03-17 23:44:22.098 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:44:22.098 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 77. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1269, R2=1320, Total=2589. Warn if over 250 bubbles per interval. 17-03-17 23:44:22.338 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 78, FrontChillerTemperature: 4.007176, 17-03-17 23:44:27.098 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:44:27.098 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 77. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1269, R2=1320, Total=2589. Warn if over 250 bubbles per interval. 17-03-17 23:44:27.698 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 78, FrontChillerTemperature: 3.990831, 17-03-17 23:44:32.098 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:44:32.098 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 77. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1269, R2=1320, Total=2589. Warn if over 250 bubbles per interval. 17-03-17 23:44:32.818 -07 000000610 INF: WaitCommand(30000) end 17-03-17 23:44:32.818 -07 000000610 INF: =================== Cycle #78, Pumping Reagent PR2 (3) =================== 17-03-17 23:44:32.818 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 5 µL, calling command Pumping to Flow Cell #1 17-03-17 23:44:32.918 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-17 23:44:32.948 -07 000000610 INF: LanePump: Recv /0`1890(0x03)\r\n 17-03-17 23:44:32.948 -07 000000610 INF: LanePump: Current Position of Pump is: 1890 17-03-17 23:44:32.948 -07 000000610 INF: =================== Cycle #78, Pumping Reagent PR2 (3), Aspirating port InputPort =================== 17-03-17 23:44:33.058 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 78, FrontChillerTemperature: 3.981281, 17-03-17 23:44:33.078 -07 000000610 INF: LanePump: Xmit /1V400IP30R\r 17-03-17 23:44:33.118 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-17 23:44:33.658 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-17 23:44:33.688 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 23:44:33.688 -07 000000610 INF: LanePump: Waited 569 ms for pump motion to complete 17-03-17 23:44:33.688 -07 000000610 INF: =================== Cycle #78, Pumping Reagent PR2 (3) =================== 17-03-17 23:44:33.818 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-17 23:44:33.848 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n 17-03-17 23:44:33.848 -07 000000610 INF: LanePump: Current Position of Pump is: 1920 17-03-17 23:44:33.978 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-17 23:44:34.008 -07 000000610 INF: LanePump: Recv /0`1920(0x03)\r\n 17-03-17 23:44:34.008 -07 000000610 INF: LanePump: Current Position of Pump is: 1920 17-03-17 23:44:34.008 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution 17-03-17 23:44:34.138 -07 000000610 INF: LanePump: Xmit /1IR\r 17-03-17 23:44:34.168 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 23:44:34.598 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-17 23:44:34.628 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 23:44:34.628 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete 17-03-17 23:44:34.628 -07 000000610 INF: =================== Cycle #78 =================== 17-03-17 23:44:34.628 -07 000000627 INF: =================== Dispense to DispenseAndWait =================== 17-03-17 23:44:34.628 -07 000000627 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort =================== 17-03-17 23:44:34.628 -07 000000433 INF: WaitCommand(30000) start 17-03-17 23:44:35.848 -07 000000627 INF: AsyncDelayTimer waited 1217ms 17-03-17 23:44:35.848 -07 000000627 INF: LanePump: Xmit /1?\r 17-03-17 23:44:35.878 -07 000000627 INF: LanePump: Recv /0`1920(0x03)\r\n 17-03-17 23:44:35.878 -07 000000627 INF: LanePump: Current Position of Pump is: 1920 17-03-17 23:44:36.008 -07 000000627 INF: LanePump: Xmit /1V1500OA0R\r 17-03-17 23:44:36.048 -07 000000627 INF: LanePump: Recv /0@(0x03)\r\n 17-03-17 23:44:37.098 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:44:37.098 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 77. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1269, R2=1320, Total=2589. Warn if over 250 bubbles per interval. 17-03-17 23:44:38.388 -07 000000627 INF: LanePump: Xmit /1Q\r 17-03-17 23:44:38.418 -07 000000627 INF: LanePump: Recv /0@(0x03)\r\n 17-03-17 23:44:38.418 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 78, FrontChillerTemperature: 3.996267, 17-03-17 23:44:38.838 -07 000000627 INF: LanePump: Xmit /1Q\r 17-03-17 23:44:38.868 -07 000000627 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 23:44:38.868 -07 000000627 INF: LanePump: Waited 2819 ms for pump motion to complete 17-03-17 23:44:38.868 -07 000000627 INF: =================== Dispense to DispenseAndWait =================== 17-03-17 23:44:38.868 -07 000000627 INF: =================== =================== 17-03-17 23:44:42.098 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:44:42.098 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 77. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1269, R2=1320, Total=2589. Warn if over 250 bubbles per interval. 17-03-17 23:44:43.778 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 78, FrontChillerTemperature: 3.989471, 17-03-17 23:44:47.098 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:44:47.098 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 77. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1269, R2=1320, Total=2589. Warn if over 250 bubbles per interval. 17-03-17 23:44:49.138 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 78, FrontChillerTemperature: 4.015368, 17-03-17 23:44:52.098 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:44:52.098 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 77. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1269, R2=1320, Total=2589. Warn if over 250 bubbles per interval. 17-03-17 23:44:54.498 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 78, FrontChillerTemperature: 4.001704, 17-03-17 23:44:57.098 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:44:57.098 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 77. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1269, R2=1320, Total=2589. Warn if over 250 bubbles per interval. 17-03-17 23:44:59.858 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 78, FrontChillerTemperature: 4.011254, 17-03-17 23:45:02.098 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:45:02.098 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 77. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1269, R2=1320, Total=2589. Warn if over 250 bubbles per interval. 17-03-17 23:45:04.638 -07 000000433 INF: WaitCommand(30000) end 17-03-17 23:45:04.638 -07 000000610 INF: =================== Cycle #78, Flow Cell Temp 22° =================== 17-03-17 23:45:04.638 -07 000000610 INF: =================== Cycle #78, Flow Cell Temp 22°, FC temperature to 22° =================== 17-03-17 23:45:04.638 -07 000000610 INF: FPGA: Xmit TEC2TEMP 0 22000000\n [FlowCellTempControl] 17-03-17 23:45:04.638 -07 000000448 INF: FPGA: Recv TEC2TEMP 17-03-17 23:45:04.648 -07 000000610 INF: FPGA: 'TEC2TEMP 0 22000000' command took 1 ms to send, 0 ms to get response, and 4 ms overall 17-03-17 23:45:04.648 -07 000000610 INF: FPGA: Xmit TEC2EN 0 1\n [FlowCellTempControl] 17-03-17 23:45:04.648 -07 000000438 INF: FPGA: Recv TEC2EN 17-03-17 23:45:04.658 -07 000000610 INF: FPGA: 'TEC2EN 0 1' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:04.658 -07 000000610 INF: =================== Cycle #78, Flow Cell Temp 22° =================== 17-03-17 23:45:04.658 -07 000000610 INF: =================== Cycle #78 =================== 17-03-17 23:45:04.658 -07 000000610 INF: =================== Cycle #78, Pumping Reagent PR2 (3) =================== 17-03-17 23:45:04.658 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 120 µL, calling command Pumping to Flow Cell #1 17-03-17 23:45:04.658 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-17 23:45:04.698 -07 000000610 INF: LanePump: Recv /0`0(0x03)\r\n 17-03-17 23:45:04.698 -07 000000610 INF: LanePump: Current Position of Pump is: 0 17-03-17 23:45:04.698 -07 000000610 INF: =================== Cycle #78, Pumping Reagent PR2 (3), Aspirating port InputPort =================== 17-03-17 23:45:04.828 -07 000000610 INF: LanePump: Xmit /1V400IP720R\r 17-03-17 23:45:04.868 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-17 23:45:05.218 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 78, FrontChillerTemperature: 3.990831, 17-03-17 23:45:07.098 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 1 R1 1 17-03-17 23:45:07.098 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 77. Bubbles during last 5000 ms interval: R1=1, R2=1, Total=2. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1270, R2=1321, Total=2591. Warn if over 250 bubbles per interval. 17-03-17 23:45:07.998 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-17 23:45:08.028 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-17 23:45:08.448 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-17 23:45:08.478 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-17 23:45:08.898 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-17 23:45:08.928 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 23:45:08.928 -07 000000610 INF: LanePump: Waited 4059 ms for pump motion to complete 17-03-17 23:45:08.928 -07 000000610 INF: =================== Cycle #78, Pumping Reagent PR2 (3) =================== 17-03-17 23:45:09.058 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-17 23:45:09.088 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n 17-03-17 23:45:09.088 -07 000000610 INF: LanePump: Current Position of Pump is: 720 17-03-17 23:45:09.218 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-17 23:45:09.248 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n 17-03-17 23:45:09.248 -07 000000610 INF: LanePump: Current Position of Pump is: 720 17-03-17 23:45:09.248 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution 17-03-17 23:45:09.378 -07 000000610 INF: LanePump: Xmit /1IR\r 17-03-17 23:45:09.408 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 23:45:09.838 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-17 23:45:09.868 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 23:45:09.868 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete 17-03-17 23:45:09.868 -07 000000610 INF: =================== Cycle #78 =================== 17-03-17 23:45:10.578 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 78, FrontChillerTemperature: 4.023489, 17-03-17 23:45:11.088 -07 000000610 INF: AsyncDelayTimer waited 1219ms 17-03-17 23:45:11.088 -07 000000610 INF: ReagentValve: Go to position 2 - PumpToFlowcell start 17-03-17 23:45:11.088 -07 000000610 INF: ReagentValve: Xmit S\r 17-03-17 23:45:11.108 -07 000000610 INF: ReagentValve: Recv 03\r 17-03-17 23:45:11.108 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 2. Moving 1 positions. 17-03-17 23:45:11.108 -07 000000610 INF: ReagentValve: Xmit -02\r 17-03-17 23:45:11.258 -07 000000610 INF: ReagentValve: Xmit B\r 17-03-17 23:45:11.278 -07 000000610 INF: ReagentValve: Recv 00E3\r 17-03-17 23:45:11.278 -07 000000610 INF: ReagentValve: Move- from 3 to 2 took 227 steps, expected 204. Error = 23 steps (11.3%) 17-03-17 23:45:11.328 -07 000000610 INF: ReagentValve: Xmit S\r 17-03-17 23:45:11.348 -07 000000610 INF: ReagentValve: Recv 02\r 17-03-17 23:45:11.348 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating 17-03-17 23:45:11.448 -07 000000610 INF: =================== Cycle #78, Pumping Reagent USM (2) =================== 17-03-17 23:45:11.448 -07 000000610 INF: LanePump: Pumping from 2, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 45 µL, calling command Pumping to Flow Cell #1 17-03-17 23:45:11.448 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-17 23:45:11.478 -07 000000610 INF: LanePump: Recv /0`720(0x03)\r\n 17-03-17 23:45:11.478 -07 000000610 INF: LanePump: Current Position of Pump is: 720 17-03-17 23:45:11.478 -07 000000610 INF: =================== Cycle #78, Pumping Reagent USM (2), Aspirating port InputPort =================== 17-03-17 23:45:11.608 -07 000000610 INF: LanePump: Xmit /1V400IP270R\r 17-03-17 23:45:11.648 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-17 23:45:12.098 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:45:12.098 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 77. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1270, R2=1321, Total=2591. Warn if over 250 bubbles per interval. 17-03-17 23:45:13.088 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-17 23:45:13.118 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-17 23:45:13.538 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-17 23:45:13.568 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 23:45:13.568 -07 000000610 INF: LanePump: Waited 1919 ms for pump motion to complete 17-03-17 23:45:13.568 -07 000000610 INF: =================== Cycle #78, Pumping Reagent USM (2) =================== 17-03-17 23:45:13.698 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-17 23:45:13.728 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n 17-03-17 23:45:13.728 -07 000000610 INF: LanePump: Current Position of Pump is: 990 17-03-17 23:45:13.858 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-17 23:45:13.888 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n 17-03-17 23:45:13.888 -07 000000610 INF: LanePump: Current Position of Pump is: 990 17-03-17 23:45:13.888 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution 17-03-17 23:45:14.018 -07 000000610 INF: LanePump: Xmit /1IR\r 17-03-17 23:45:14.048 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 23:45:14.478 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-17 23:45:14.508 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 23:45:14.508 -07 000000610 INF: LanePump: Waited 460 ms for pump motion to complete 17-03-17 23:45:14.508 -07 000000610 INF: =================== Cycle #78 =================== 17-03-17 23:45:15.728 -07 000000610 INF: AsyncDelayTimer waited 1218ms 17-03-17 23:45:15.728 -07 000000610 INF: ReagentValve: Go to position 3 - PumpToFlowcell start 17-03-17 23:45:15.728 -07 000000610 INF: ReagentValve: Xmit S\r 17-03-17 23:45:15.748 -07 000000610 INF: ReagentValve: Recv 02\r 17-03-17 23:45:15.748 -07 000000610 INF: ReagentValve: Taking shortest path '+' from 2 to 3. Moving 1 positions. 17-03-17 23:45:15.748 -07 000000610 INF: ReagentValve: Xmit +03\r 17-03-17 23:45:15.898 -07 000000610 INF: ReagentValve: Xmit B\r 17-03-17 23:45:15.918 -07 000000610 INF: ReagentValve: Recv 00E3\r 17-03-17 23:45:15.918 -07 000000610 INF: ReagentValve: Move+ from 2 to 3 took 227 steps, expected 204. Error = 23 steps (11.3%) 17-03-17 23:45:15.938 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 78, FrontChillerTemperature: 4.037119, 17-03-17 23:45:15.968 -07 000000610 INF: ReagentValve: Xmit S\r 17-03-17 23:45:15.988 -07 000000610 INF: ReagentValve: Recv 03\r 17-03-17 23:45:15.988 -07 000000610 INF: LanePump: Waiting 100 ms after setting reagent valve before aspirating 17-03-17 23:45:16.088 -07 000000610 INF: =================== Cycle #78, Pumping Reagent PR2 (3) =================== 17-03-17 23:45:16.088 -07 000000610 INF: LanePump: Pumping from 3, aspirate port InputPort, aspiration rate 2000 µL/min, dispense rate 7500 µL/min, volume 20 µL, calling command Pumping to Flow Cell #1 17-03-17 23:45:16.088 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-17 23:45:16.118 -07 000000610 INF: LanePump: Recv /0`990(0x03)\r\n 17-03-17 23:45:16.118 -07 000000610 INF: LanePump: Current Position of Pump is: 990 17-03-17 23:45:16.118 -07 000000610 INF: =================== Cycle #78, Pumping Reagent PR2 (3), Aspirating port InputPort =================== 17-03-17 23:45:16.248 -07 000000610 INF: LanePump: Xmit /1V400IP120R\r 17-03-17 23:45:16.288 -07 000000610 INF: LanePump: Recv /0@(0x03)\r\n 17-03-17 23:45:17.098 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:45:17.098 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 77. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1270, R2=1321, Total=2591. Warn if over 250 bubbles per interval. 17-03-17 23:45:17.158 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-17 23:45:17.188 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 23:45:17.188 -07 000000610 INF: LanePump: Waited 899 ms for pump motion to complete 17-03-17 23:45:17.188 -07 000000610 INF: =================== Cycle #78, Pumping Reagent PR2 (3) =================== 17-03-17 23:45:17.318 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-17 23:45:17.348 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n 17-03-17 23:45:17.348 -07 000000610 INF: LanePump: Current Position of Pump is: 1110 17-03-17 23:45:17.478 -07 000000610 INF: LanePump: Xmit /1?\r 17-03-17 23:45:17.508 -07 000000610 INF: LanePump: Recv /0`1110(0x03)\r\n 17-03-17 23:45:17.508 -07 000000610 INF: LanePump: Current Position of Pump is: 1110 17-03-17 23:45:17.508 -07 000000610 INF: LanePump: Waiting 2 ms before setting solenoid valve back to 'aspirate' position after PumpSolution 17-03-17 23:45:17.638 -07 000000610 INF: LanePump: Xmit /1IR\r 17-03-17 23:45:17.668 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 23:45:18.098 -07 000000610 INF: LanePump: Xmit /1Q\r 17-03-17 23:45:18.128 -07 000000610 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 23:45:18.128 -07 000000610 INF: LanePump: Waited 459 ms for pump motion to complete 17-03-17 23:45:18.128 -07 000000610 INF: =================== Cycle #78 =================== 17-03-17 23:45:18.128 -07 000000627 INF: WaitCommand(10000) start 17-03-17 23:45:18.128 -07 000000502 INF: =================== Dispense to DispenseAndWait =================== 17-03-17 23:45:18.128 -07 000000502 INF: =================== Dispense to DispenseAndWait, Dispensing port OutputPort =================== 17-03-17 23:45:19.348 -07 000000502 INF: AsyncDelayTimer waited 1216ms 17-03-17 23:45:19.348 -07 000000502 INF: LanePump: Xmit /1?\r 17-03-17 23:45:19.378 -07 000000502 INF: LanePump: Recv /0`1110(0x03)\r\n 17-03-17 23:45:19.378 -07 000000502 INF: LanePump: Current Position of Pump is: 1110 17-03-17 23:45:19.508 -07 000000502 INF: LanePump: Xmit /1V1500OA0R\r 17-03-17 23:45:19.548 -07 000000502 INF: LanePump: Recv /0@(0x03)\r\n 17-03-17 23:45:21.078 -07 000000502 INF: LanePump: Xmit /1Q\r 17-03-17 23:45:21.108 -07 000000502 INF: LanePump: Recv /0@(0x03)\r\n 17-03-17 23:45:21.298 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 78, FrontChillerTemperature: 4.004458, 17-03-17 23:45:21.528 -07 000000502 INF: LanePump: Xmit /1Q\r 17-03-17 23:45:21.558 -07 000000502 INF: LanePump: Recv /0`(0x03)\r\n 17-03-17 23:45:21.558 -07 000000502 INF: LanePump: Waited 2009 ms for pump motion to complete 17-03-17 23:45:21.558 -07 000000502 INF: =================== Dispense to DispenseAndWait =================== 17-03-17 23:45:21.558 -07 000000502 INF: =================== =================== 17-03-17 23:45:22.098 -07 000000448 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:45:22.098 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 77. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1270, R2=1321, Total=2591. Warn if over 250 bubbles per interval. 17-03-17 23:45:26.658 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 78, FrontChillerTemperature: 4.02213, 17-03-17 23:45:27.098 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:45:27.098 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 77. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1270, R2=1321, Total=2591. Warn if over 250 bubbles per interval. 17-03-17 23:45:28.138 -07 000000627 INF: WaitCommand(10000) end 17-03-17 23:45:28.138 -07 000000610 INF: =================== Cycle #78, Imaging =================== 17-03-17 23:45:28.138 -07 000000610 INF: Imaging Cycle 78: ScanTilesCommand Cycle 78 time start. 17-03-17 23:45:28.138 -07 000000610 INF: ReagentValve: Go to position 24 (Plug) - Start of ScanTilesCommand 17-03-17 23:45:28.138 -07 000000610 INF: ReagentValve: Xmit S\r 17-03-17 23:45:28.168 -07 000000610 INF: ReagentValve: Recv 03\r 17-03-17 23:45:28.168 -07 000000610 INF: ReagentValve: Taking shortest path '-' from 3 to 24. Moving 3 positions. 17-03-17 23:45:28.168 -07 000000610 INF: ReagentValve: Xmit -18\r 17-03-17 23:45:28.468 -07 000000610 INF: ReagentValve: Xmit B\r 17-03-17 23:45:28.488 -07 000000610 INF: ReagentValve: Recv 0278\r 17-03-17 23:45:28.488 -07 000000610 INF: ReagentValve: Move- from 3 to 24 took 632 steps, expected 612. Error = 20 steps (3.3%) 17-03-17 23:45:28.538 -07 000000610 INF: ReagentValve: Xmit S\r 17-03-17 23:45:28.558 -07 000000610 INF: ReagentValve: Recv 18\r 17-03-17 23:45:28.558 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:45:28.558 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:45:28.558 -07 000000627 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms start. 17-03-17 23:45:28.558 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:45:28.558 -07 000000627 INF: FPGA: Xmit EXLED1ON\n [RedLED] 17-03-17 23:45:28.558 -07 000000448 INF: FPGA: Recv EXLED1ON 17-03-17 23:45:28.568 -07 000000627 INF: FPGA: 'EXLED1ON' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-17 23:45:28.568 -07 000000627 INF: FPGA: Xmit EXLED1ADCR\n [RedLED] 17-03-17 23:45:28.568 -07 000000618 INF: FPGA: Recv EXLED1ADCR 23209 17-03-17 23:45:28.578 -07 000000627 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:28.578 -07 000000627 INF: RedLED: Using Red data: Photodiode ADC 23209 --> 7.5 mW (old method), or 205.7 mW (new method). Difference = 198.2 mW 17-03-17 23:45:28.578 -07 000000627 INF: FPGA: Xmit EXLED1OFF\n [RedLED] 17-03-17 23:45:28.578 -07 000000547 INF: FPGA: Recv EXLED1OFF 17-03-17 23:45:28.588 -07 000000627 INF: FPGA: 'EXLED1OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:28.588 -07 000000627 INF: RedLED: LED was on for 20 ms 17-03-17 23:45:28.588 -07 000000627 INF: RedLED: Snapping RedLED at power = 1930.000 mW, snap mode for ~0 ms end. Duration was 23 ms. 17-03-17 23:45:28.588 -07 000000627 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms start. 17-03-17 23:45:28.588 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:45:28.588 -07 000000627 INF: FPGA: Xmit EXLED2ON\n [GreenLED] 17-03-17 23:45:28.588 -07 000000480 INF: FPGA: Recv EXLED2ON 17-03-17 23:45:28.598 -07 000000627 INF: FPGA: 'EXLED2ON' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:45:28.598 -07 000000627 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED] 17-03-17 23:45:28.598 -07 000000433 INF: FPGA: Recv EXLED1ADCR 2099 17-03-17 23:45:28.608 -07 000000627 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:28.608 -07 000000627 INF: GreenLED: Using Green data: Photodiode ADC 2099 --> 0.9 mW (old method), or 182.4 mW (new method). Difference = 181.5 mW 17-03-17 23:45:28.608 -07 000000627 INF: FPGA: Xmit EXLED2OFF\n [GreenLED] 17-03-17 23:45:28.608 -07 000000618 INF: FPGA: Recv EXLED2OFF 17-03-17 23:45:28.618 -07 000000627 INF: FPGA: 'EXLED2OFF' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:28.618 -07 000000627 INF: GreenLED: LED was on for 20 ms 17-03-17 23:45:28.618 -07 000000627 INF: GreenLED: Snapping GreenLED at power = 5964.000 mW, snap mode for ~0 ms end. Duration was 28 ms. 17-03-17 23:45:28.618 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator] 17-03-17 23:45:28.618 -07 000000547 INF: FPGA: Recv EMCUR 17-03-17 23:45:28.628 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-17 23:45:28.628 -07 000000610 INF: FPGA: Xmit EMOUT 20 70\n [Compensator] 17-03-17 23:45:29.128 -07 000000623 INF: FPGA: Recv EMOUT 17-03-17 23:45:29.128 -07 000000610 INF: FPGA: 'EMOUT 20 70' command took 0 ms to send, 493 ms to get response, and 502 ms overall 17-03-17 23:45:29.128 -07 000000610 INF: FPGA: Xmit EMCUR 75\n [Compensator] 17-03-17 23:45:29.128 -07 000000438 INF: FPGA: Recv EMCUR 17-03-17 23:45:29.138 -07 000000610 INF: FPGA: 'EMCUR 75' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 23:45:29.138 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-17 23:45:29.138 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 75.380859375, Z-Position -0.126265748242264. ------ 17-03-17 23:45:29.138 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:45:29.138 -07 000000482 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.17908 mm 17-03-17 23:45:29.138 -07 000000482 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 23:45:29.138 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True) 17-03-17 23:45:29.138 -07 000000618 INF: Y Motor: Moving to 59.9126 mm, started at 75.3809 mm, delta = -15.4683 mm 17-03-17 23:45:29.138 -07 000000438 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:45:29.148 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-17 23:45:29.148 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:45:29.148 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 39120, sync = True, waitForSettling = False) 17-03-17 23:45:29.148 -07 000000486 INF: Z Motor: Moving to -0.179080 mm, started at -0.126266 mm, distance = -52.81 um 17-03-17 23:45:29.148 -07 000000448 INF: FPGA: Recv YRDPOS 154380 17-03-17 23:45:29.158 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:45:29.158 -07 000000618 INF: Y Motor: Encoder = 154380 = motor step 120609.4 = 75.3809 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:45:29.158 -07 000000618 INF: Y Motor: Last commanded position = 75.3806 mm (120608.9 steps), delta from last commanded position = -15.4680 mm (-24748.8 steps). UsingTableMove = False 17-03-17 23:45:29.158 -07 000000618 INF: Y Motor: Moving to 122701 encoder counts 17-03-17 23:45:29.158 -07 000000486 INF: FPGA: Xmit ZDACW 39120\n [Z Motor] 17-03-17 23:45:29.158 -07 000000576 INF: FPGA: Recv ZDACW 17-03-17 23:45:29.168 -07 000000547 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 23:45:29.168 -07 000000486 INF: FPGA: 'ZDACW 39120' command took 3 ms to send, 0 ms to get response, and 19 ms overall 17-03-17 23:45:29.178 -07 000000618 INF: FPGA: Xmit YMVTO 122701\n [Y Motor] 17-03-17 23:45:29.188 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:45:29.188 -07 000000409 INF: FPGA: Recv ZDACR 39120 17-03-17 23:45:29.198 -07 000000486 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-17 23:45:29.198 -07 000000486 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet)) 17-03-17 23:45:29.368 -07 000000433 INF: FPGA: Recv FOCMRRFOC 17-03-17 23:45:29.368 -07 000000547 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall 17-03-17 23:45:30.858 -07 000000502 INF: FPGA: Recv YMVTO 122703 24775 17-03-17 23:45:30.858 -07 000000618 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1675 ms to get response, and 1702 ms overall 17-03-17 23:45:30.858 -07 000000618 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm) 17-03-17 23:45:30.858 -07 000000618 INF: Y Motor: To move from 75.381 to 59.913 (-15.468 mm) should take 24749 steps, but required 24775 steps (15.484 mm). Slippage = 0.016 mm (0.00%). 17-03-17 23:45:30.858 -07 000000618 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1702 ms, distance = 15.468 mm, average velocity = 9.088 mm/sec 17-03-17 23:45:32.018 -07 000000448 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 78, FrontChillerTemperature: 4.001704, 17-03-17 23:45:32.098 -07 000000623 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:45:32.098 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 77. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1270, R2=1321, Total=2591. Warn if over 250 bubbles per interval. 17-03-17 23:45:33.708 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:45:33.708 -07 000000459 INF: FPGA: Recv YRDPOS 122698 17-03-17 23:45:33.718 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:33.718 -07 000000618 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:45:33.738 -07 000000618 INF: Y Motor: After move to 59.912609, error = -0.001476, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 23:45:33.738 -07 000000618 INF: Y Motor: Position error after settling = -3 encoder counts (-0.001 mm), Delta during settling = -5 counts (-0.002 mm) 17-03-17 23:45:33.738 -07 000000618 INF: Y Motor: Moved to 59.9111 after 4596 ms 17-03-17 23:45:33.748 -07 000000482 INF: Z Motor: EndOfMoveAbsStepped: target = -0.179080 mm (DAC = 39120) 17-03-17 23:45:33.748 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:33.748 -07 000000512 INF: FPGA: Recv ZSGSRD 37168 17-03-17 23:45:33.758 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:33.758 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:33.758 -07 000000459 INF: FPGA: Recv ZSGSRD 37166 17-03-17 23:45:33.768 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:33.768 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:33.768 -07 000000480 INF: FPGA: Recv ZSGSRD 37164 17-03-17 23:45:33.778 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:33.778 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:33.778 -07 000000623 INF: FPGA: Recv ZSGSRD 37170 17-03-17 23:45:33.788 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:33.788 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:33.788 -07 000000547 INF: FPGA: Recv ZSGSRD 37162 17-03-17 23:45:33.798 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:33.798 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:33.798 -07 000000448 INF: FPGA: Recv ZSGSRD 37169 17-03-17 23:45:33.808 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:33.808 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:33.808 -07 000000433 INF: FPGA: Recv ZSGSRD 37171 17-03-17 23:45:33.818 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:33.818 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:33.818 -07 000000475 INF: FPGA: Recv ZSGSRD 37165 17-03-17 23:45:33.828 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:33.828 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:33.828 -07 000000547 INF: FPGA: Recv ZSGSRD 37165 17-03-17 23:45:33.838 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:33.838 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:33.838 -07 000000459 INF: FPGA: Recv ZSGSRD 37161 17-03-17 23:45:33.848 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:33.848 -07 000000482 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:45:33.848 -07 000000623 INF: FPGA: Recv ZPIEZORD 33389 17-03-17 23:45:33.858 -07 000000482 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:33.858 -07 000000482 INF: Z Motor: Piezo is near 51.3 V (nominally 0 to 100 V), expect near 59.7 V, since DAC is at 5.969 V. Piezo Error = -8.4 V. 17-03-17 23:45:33.858 -07 000000482 INF: Z Motor: ReadAdcAverage: Commanded Z = -179.1 um, Read 10 ADC samples: Avg = 37166 (-178.2 uncal um), Error = 0.9 uncal um, Median = 37166 (-178.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 37161 (-178.2 uncal um), Max = 37171 (-178.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-17 23:45:33.858 -07 000000482 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 37166, posNoise = 5, negNoise = 5 17-03-17 23:45:33.858 -07 000000482 INF: Z Motor: After move to -0.179080, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:45:33.858 -07 000000482 INF: Z Motor: Settle wait time = 4600 ms, measure time = 110 ms (allowed 150 ms), total time = 4710 ms 17-03-17 23:45:33.858 -07 000000482 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms 17-03-17 23:45:33.898 -07 000000482 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 4753 ms 17-03-17 23:45:33.898 -07 000000482 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 23:45:33.898 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:45:33.898 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:45:33.898 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:45:33.898 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 23:45:33.898 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:45:33.898 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:45:33.898 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:45:33.898 -07 000000475 INF: Camera: sBCa_SetPowerMode(785074288, 1) start. 17-03-17 23:45:33.928 -07 000000475 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 23 ms. 17-03-17 23:45:33.928 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 23:45:33.928 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms. 17-03-17 23:45:33.928 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 23:45:33.948 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms. 17-03-17 23:45:33.948 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 42 ms. 17-03-17 23:45:33.948 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:45:33.988 -07 000000475 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 23:45:34.288 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-17 23:45:34.288 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-17 23:45:34.288 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 23:45:34.288 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 611574712, 0x0, 559484976) start. 17-03-17 23:45:34.328 -07 000000475 INF: FPGA: Recv @CAMSNAP 380 17-03-17 23:45:34.328 -07 000000433 INF: FPGA: Recv CAMSNAP 17-03-17 23:45:34.328 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 385 ms overall 17-03-17 23:45:34.418 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 611574712, 0x0, 559484976) end. Duration was 125 ms. 17-03-17 23:45:34.418 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:45:34.418 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-17 23:45:34.418 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms. 17-03-17 23:45:34.528 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:45:34.528 -07 000000409 INF: Image SNR check: start 17-03-17 23:45:34.528 -07 000000512 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:45:34.538 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 23:45:34.538 -07 000000459 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 23:45:34.538 -07 000000409 INF: Image SNR check: pass [peak (Max-Min)=183.71] 17-03-17 23:45:34.538 -07 000000409 INF: Autofocus start 17-03-17 23:45:34.538 -07 000000409 INF: MeasureProfile start 17-03-17 23:45:34.548 -07 000000409 INF: MeasureProfile done 17-03-17 23:45:34.548 -07 000000409 INF: X=-48 Z correction [um]=-0.3191189 17-03-17 23:45:34.548 -07 000000409 INF: Autofocus finished 17-03-17 23:45:34.738 -07 000000618 INF: FPGA: Recv FOCMRRIMG 17-03-17 23:45:34.738 -07 000000459 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 196 ms to get response, and 205 ms overall 17-03-17 23:45:34.748 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.9111328125, Z-position -0.179085620471823. ---------- 17-03-17 23:45:34.748 -07 000000610 INF: Cycle 78 Tile 1 Exposure Settings A 1037 G 500 T 500 C 1037 17-03-17 23:45:34.748 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37563, sync = True, waitForSettling = True) 17-03-17 23:45:34.748 -07 000000610 INF: Z Motor: Moving to -0.171952 mm, started at -0.179086 mm, distance = 7.13 um 17-03-17 23:45:34.748 -07 000000610 INF: FPGA: Xmit ZDACW 37563\n [Z Motor] 17-03-17 23:45:34.748 -07 000000480 INF: FPGA: Recv ZDACW 17-03-17 23:45:34.758 -07 000000610 INF: FPGA: 'ZDACW 37563' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:45:34.758 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:45:34.758 -07 000000627 INF: FPGA: Recv ZDACR 37563 17-03-17 23:45:34.768 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:34.768 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:45:34.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:34.918 -07 000000512 INF: FPGA: Recv ZSGSRD 36054 17-03-17 23:45:34.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:45:34.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:34.928 -07 000000541 INF: FPGA: Recv ZSGSRD 36058 17-03-17 23:45:34.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:34.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:34.938 -07 000000482 INF: FPGA: Recv ZSGSRD 36059 17-03-17 23:45:34.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:34.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:34.948 -07 000000480 INF: FPGA: Recv ZSGSRD 36059 17-03-17 23:45:34.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:34.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:34.958 -07 000000627 INF: FPGA: Recv ZSGSRD 36056 17-03-17 23:45:34.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:34.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:34.968 -07 000000438 INF: FPGA: Recv ZSGSRD 36056 17-03-17 23:45:34.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:34.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:34.978 -07 000000433 INF: FPGA: Recv ZSGSRD 36065 17-03-17 23:45:34.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:34.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:34.988 -07 000000482 INF: FPGA: Recv ZSGSRD 36055 17-03-17 23:45:34.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:34.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:34.998 -07 000000475 INF: FPGA: Recv ZSGSRD 36062 17-03-17 23:45:35.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:35.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:35.008 -07 000000627 INF: FPGA: Recv ZSGSRD 36050 17-03-17 23:45:35.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:35.018 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:45:35.018 -07 000000561 INF: FPGA: Recv ZPIEZORD 31925 17-03-17 23:45:35.028 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:35.028 -07 000000610 INF: Z Motor: Piezo is near 48.2 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.732 V. Piezo Error = -9.1 V. 17-03-17 23:45:35.028 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.0 um, Read 10 ADC samples: Avg = 36057 (-171.1 uncal um), Error = 0.9 uncal um, Median = 36057 (-171.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 36050 (-171.0 uncal um), Max = 36065 (-171.1 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um) 17-03-17 23:45:35.028 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36057, posNoise = 8, negNoise = 7 17-03-17 23:45:35.028 -07 000000610 INF: Z Motor: After move to -0.171952, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:45:35.028 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms) 17-03-17 23:45:35.028 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:45:35.028 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:45:35.028 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:45:35.028 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:45:35.028 -07 000000409 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 23:45:35.028 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:45:35.028 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 23:45:35.028 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 23:45:35.028 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-17 23:45:35.028 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 23:45:35.028 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-17 23:45:35.028 -07 000000475 INF: Camera: sBCa_SetPowerMode(785074704, 1) start. 17-03-17 23:45:35.038 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-17 23:45:35.038 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 23:45:35.048 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms. 17-03-17 23:45:35.048 -07 000000409 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms. 17-03-17 23:45:35.058 -07 000000475 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 22 ms. 17-03-17 23:45:35.058 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 23:45:35.058 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-17 23:45:35.058 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 23:45:35.078 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms. 17-03-17 23:45:35.078 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 43 ms. 17-03-17 23:45:35.078 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 37739 150\n [Camera] 17-03-17 23:45:35.278 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 23:45:36.318 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229 17-03-17 23:45:36.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229 17-03-17 23:45:36.318 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:45:36.318 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229 17-03-17 23:45:36.318 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229 17-03-17 23:45:36.318 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:45:36.328 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:45:36.328 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start. 17-03-17 23:45:36.328 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:45:36.328 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start. 17-03-17 23:45:36.508 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37739 1422 17-03-17 23:45:36.658 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572 17-03-17 23:45:36.718 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 395 ms. 17-03-17 23:45:36.718 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms. 17-03-17 23:45:36.718 -07 000000459 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:45:36.718 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 396 ms. 17-03-17 23:45:36.718 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms. 17-03-17 23:45:36.718 -07 000000448 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:45:36.728 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms. 17-03-17 23:45:36.728 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms. 17-03-17 23:45:36.728 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms. 17-03-17 23:45:36.738 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 420 ms. 17-03-17 23:45:37.098 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:45:37.098 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 77. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1270, R2=1321, Total=2591. Warn if over 250 bubbles per interval. 17-03-17 23:45:37.158 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072 17-03-17 23:45:37.158 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072 17-03-17 23:45:37.158 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:45:37.268 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072 17-03-17 23:45:37.268 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072 17-03-17 23:45:37.278 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:45:37.278 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:45:37.278 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) start. 17-03-17 23:45:37.278 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:45:37.278 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) start. 17-03-17 23:45:37.348 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 2265 17-03-17 23:45:37.348 -07 000000409 INF: FPGA: Recv CAMDBLSNAP 17-03-17 23:45:37.348 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 37739 150' command took 4 ms to send, 2264 ms to get response, and 2272 ms overall 17-03-17 23:45:37.348 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-17 23:45:37.348 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.9111328125, Z-Position -0.17196116920661. ------ 17-03-17 23:45:37.348 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:45:37.348 -07 000000547 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.17786 mm 17-03-17 23:45:37.358 -07 000000547 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 23:45:37.358 -07 000000433 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:45:37.358 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall 17-03-17 23:45:37.358 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True) 17-03-17 23:45:37.358 -07 000000561 INF: Y Motor: Moving to 60.7426 mm, started at 59.9111 mm, delta = 0.8315 mm 17-03-17 23:45:37.358 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 23:45:37.358 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 38853, sync = True, waitForSettling = False) 17-03-17 23:45:37.358 -07 000000512 INF: Z Motor: Moving to -0.177858 mm, started at -0.171961 mm, distance = -5.90 um 17-03-17 23:45:37.378 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:45:37.378 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 78, FrontChillerTemperature: 3.979922, 17-03-17 23:45:37.378 -07 000000618 INF: FPGA: Recv YRDPOS 122698 17-03-17 23:45:37.388 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall 17-03-17 23:45:37.388 -07 000000561 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:45:37.388 -07 000000512 INF: FPGA: Xmit ZDACW 38853\n [Z Motor] 17-03-17 23:45:37.388 -07 000000561 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 23:45:37.388 -07 000000561 INF: Y Motor: Moving 1330 steps2 17-03-17 23:45:37.388 -07 000000618 INF: FPGA: Recv ZDACW 17-03-17 23:45:37.398 -07 000000512 INF: FPGA: 'ZDACW 38853' command took 3 ms to send, 0 ms to get response, and 36 ms overall 17-03-17 23:45:37.408 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 23:45:37.418 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:45:37.418 -07 000000459 INF: FPGA: Recv ZDACR 38853 17-03-17 23:45:37.428 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-17 23:45:37.428 -07 000000512 INF: Z Motor: MoveAbsStepped took 66 ms (did NOT wait for settling yet)) 17-03-17 23:45:37.558 -07 000000475 INF: FPGA: Recv FOCMRRFOC 17-03-17 23:45:37.558 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 202 ms overall 17-03-17 23:45:37.678 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1406045800, 0x0, 391868352) end. Duration was 399 ms. 17-03-17 23:45:37.678 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms. 17-03-17 23:45:37.678 -07 000000438 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:45:37.678 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1441468064, 0x0, 418435064) end. Duration was 398 ms. 17-03-17 23:45:37.678 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms. 17-03-17 23:45:37.678 -07 000000623 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:45:37.678 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:45:37.678 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 521 ms. 17-03-17 23:45:37.678 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:45:37.688 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms. 17-03-17 23:45:37.778 -07 000000623 INF: FPGA: Recv YMVTILE 17-03-17 23:45:37.778 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 394 ms overall 17-03-17 23:45:37.818 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:45:37.818 -07 000000618 INF: FPGA: Recv YRDPOS 124381 17-03-17 23:45:37.828 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-17 23:45:37.828 -07 000000561 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:45:37.828 -07 000000561 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm) 17-03-17 23:45:37.828 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.831 mm, average velocity = 2.110 mm/sec 17-03-17 23:45:38.778 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:45:38.778 -07 000000512 INF: FPGA: Recv YRDPOS 124381 17-03-17 23:45:38.788 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:45:38.788 -07 000000561 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:45:38.808 -07 000000561 INF: Y Motor: After move to 60.742607, error = -0.009697, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 23:45:38.808 -07 000000561 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm) 17-03-17 23:45:38.808 -07 000000561 INF: Y Motor: Moved to 60.7329 after 1454 ms (table move) 17-03-17 23:45:38.818 -07 000000547 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177858 mm (DAC = 38853) 17-03-17 23:45:38.818 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:38.818 -07 000000475 INF: FPGA: Recv ZSGSRD 36980 17-03-17 23:45:38.828 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:38.828 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:38.828 -07 000000502 INF: FPGA: Recv ZSGSRD 36976 17-03-17 23:45:38.838 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:38.838 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:38.838 -07 000000438 INF: FPGA: Recv ZSGSRD 36977 17-03-17 23:45:38.848 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:38.848 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:38.848 -07 000000627 INF: FPGA: Recv ZSGSRD 36976 17-03-17 23:45:38.858 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:38.858 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:38.858 -07 000000480 INF: FPGA: Recv ZSGSRD 36979 17-03-17 23:45:38.868 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:38.868 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:38.868 -07 000000618 INF: FPGA: Recv ZSGSRD 36985 17-03-17 23:45:38.878 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:38.878 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:38.878 -07 000000448 INF: FPGA: Recv ZSGSRD 36979 17-03-17 23:45:38.888 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:38.888 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:38.888 -07 000000459 INF: FPGA: Recv ZSGSRD 36973 17-03-17 23:45:38.898 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:38.898 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:38.898 -07 000000482 INF: FPGA: Recv ZSGSRD 36975 17-03-17 23:45:38.908 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:38.908 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:38.908 -07 000000618 INF: FPGA: Recv ZSGSRD 36980 17-03-17 23:45:38.918 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:38.918 -07 000000547 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:45:38.918 -07 000000448 INF: FPGA: Recv ZPIEZORD 33129 17-03-17 23:45:38.928 -07 000000547 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:38.928 -07 000000547 INF: Z Motor: Piezo is near 50.8 V (nominally 0 to 100 V), expect near 59.3 V, since DAC is at 5.929 V. Piezo Error = -8.5 V. 17-03-17 23:45:38.928 -07 000000547 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.9 um, Read 10 ADC samples: Avg = 36978 (-177.0 uncal um), Error = 0.9 uncal um, Median = 36978 (-177.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36973 (-177.0 uncal um), Max = 36985 (-177.0 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-17 23:45:38.928 -07 000000547 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36978, posNoise = 7, negNoise = 5 17-03-17 23:45:38.928 -07 000000547 INF: Z Motor: After move to -0.177858, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:45:38.928 -07 000000547 INF: Z Motor: Settle wait time = 1457 ms, measure time = 111 ms (allowed 150 ms), total time = 1568 ms 17-03-17 23:45:38.928 -07 000000547 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms 17-03-17 23:45:38.968 -07 000000547 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1610 ms 17-03-17 23:45:38.968 -07 000000547 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 23:45:38.968 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:45:38.968 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:45:38.968 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:45:38.968 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 23:45:38.968 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:45:38.968 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:45:38.968 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:45:38.968 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 23:45:38.968 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-17 23:45:38.978 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 23:45:38.988 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms. 17-03-17 23:45:38.988 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms. 17-03-17 23:45:38.988 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:45:39.028 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 23:45:39.328 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-17 23:45:39.328 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-17 23:45:39.338 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 23:45:39.338 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 611436024, 0x0, 559484976) start. 17-03-17 23:45:39.368 -07 000000627 INF: FPGA: Recv @CAMSNAP 380 17-03-17 23:45:39.368 -07 000000486 INF: FPGA: Recv CAMSNAP 17-03-17 23:45:39.368 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall 17-03-17 23:45:39.458 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 611436024, 0x0, 559484976) end. Duration was 125 ms. 17-03-17 23:45:39.458 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:45:39.458 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-17 23:45:39.458 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms. 17-03-17 23:45:39.568 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:45:39.568 -07 000000502 INF: Autofocus start 17-03-17 23:45:39.568 -07 000000502 INF: MeasureProfile start 17-03-17 23:45:39.568 -07 000000409 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:45:39.578 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 23:45:39.578 -07 000000541 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 23:45:39.578 -07 000000502 INF: MeasureProfile done 17-03-17 23:45:39.578 -07 000000502 INF: X=0 Z correction [um]=-0.0713522 17-03-17 23:45:39.578 -07 000000502 INF: Autofocus finished 17-03-17 23:45:39.778 -07 000000409 INF: FPGA: Recv FOCMRRIMG 17-03-17 23:45:39.778 -07 000000541 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 23:45:39.778 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73291015625, Z-position -0.177877868589172. ---------- 17-03-17 23:45:39.778 -07 000000610 INF: Cycle 78 Tile 2 Exposure Settings A 1037 G 500 T 500 C 1037 17-03-17 23:45:39.778 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37350, sync = True, waitForSettling = True) 17-03-17 23:45:39.788 -07 000000610 INF: Z Motor: Moving to -0.170977 mm, started at -0.177878 mm, distance = 6.90 um 17-03-17 23:45:39.788 -07 000000610 INF: FPGA: Xmit ZDACW 37350\n [Z Motor] 17-03-17 23:45:39.788 -07 000000576 INF: FPGA: Recv ZDACW 17-03-17 23:45:39.798 -07 000000610 INF: FPGA: 'ZDACW 37350' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:45:39.798 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:45:39.798 -07 000000475 INF: FPGA: Recv ZDACR 37350 17-03-17 23:45:39.808 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:39.808 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:45:39.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:39.958 -07 000000512 INF: FPGA: Recv ZSGSRD 35907 17-03-17 23:45:39.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:39.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:39.968 -07 000000547 INF: FPGA: Recv ZSGSRD 35903 17-03-17 23:45:39.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:39.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:39.978 -07 000000482 INF: FPGA: Recv ZSGSRD 35911 17-03-17 23:45:39.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:39.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:39.988 -07 000000502 INF: FPGA: Recv ZSGSRD 35909 17-03-17 23:45:39.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:39.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:39.998 -07 000000448 INF: FPGA: Recv ZSGSRD 35905 17-03-17 23:45:40.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:40.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:40.008 -07 000000547 INF: FPGA: Recv ZSGSRD 35907 17-03-17 23:45:40.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:40.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:40.018 -07 000000627 INF: FPGA: Recv ZSGSRD 35908 17-03-17 23:45:40.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:40.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:40.028 -07 000000433 INF: FPGA: Recv ZSGSRD 35906 17-03-17 23:45:40.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:40.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:40.038 -07 000000502 INF: FPGA: Recv ZSGSRD 35903 17-03-17 23:45:40.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:40.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:40.048 -07 000000409 INF: FPGA: Recv ZSGSRD 35908 17-03-17 23:45:40.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:40.058 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:45:40.058 -07 000000547 INF: FPGA: Recv ZPIEZORD 31695 17-03-17 23:45:40.068 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:40.068 -07 000000610 INF: Z Motor: Piezo is near 47.7 V (nominally 0 to 100 V), expect near 57.0 V, since DAC is at 5.699 V. Piezo Error = -9.3 V. 17-03-17 23:45:40.068 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.0 um, Read 10 ADC samples: Avg = 35907 (-170.1 uncal um), Error = 0.9 uncal um, Median = 35907 (-170.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35903 (-170.1 uncal um), Max = 35911 (-170.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um) 17-03-17 23:45:40.068 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35907, posNoise = 4, negNoise = 4 17-03-17 23:45:40.068 -07 000000610 INF: Z Motor: After move to -0.170977, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:45:40.068 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms) 17-03-17 23:45:40.068 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:45:40.068 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:45:40.068 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:45:40.068 -07 000000409 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 23:45:40.068 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:45:40.068 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:45:40.068 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 23:45:40.068 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 23:45:40.068 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:45:40.068 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 23:45:40.068 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-17 23:45:40.068 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 23:45:40.068 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-17 23:45:40.068 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 23:45:40.078 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms. 17-03-17 23:45:40.078 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 23:45:40.088 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms. 17-03-17 23:45:40.088 -07 000000409 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms. 17-03-17 23:45:40.088 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms. 17-03-17 23:45:40.088 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms. 17-03-17 23:45:40.098 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 37527 150\n [Camera] 17-03-17 23:45:40.298 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 23:45:41.338 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1230 17-03-17 23:45:41.338 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1230 17-03-17 23:45:41.338 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:45:41.338 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:45:41.338 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) start. 17-03-17 23:45:41.338 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1230 17-03-17 23:45:41.338 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1230 17-03-17 23:45:41.338 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:45:41.338 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:45:41.338 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start. 17-03-17 23:45:41.528 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37527 1422 17-03-17 23:45:41.678 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572 17-03-17 23:45:41.728 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1476890328, 0x0, 391868352) end. Duration was 396 ms. 17-03-17 23:45:41.728 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms. 17-03-17 23:45:41.728 -07 000000482 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:45:41.728 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 393 ms. 17-03-17 23:45:41.728 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms. 17-03-17 23:45:41.728 -07 000000576 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:45:41.738 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:45:41.738 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms. 17-03-17 23:45:41.738 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:45:41.748 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 406 ms. 17-03-17 23:45:42.098 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:45:42.098 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 77. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1270, R2=1321, Total=2591. Warn if over 250 bubbles per interval. 17-03-17 23:45:42.178 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072 17-03-17 23:45:42.178 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072 17-03-17 23:45:42.178 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:45:42.178 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:45:42.178 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) start. 17-03-17 23:45:42.178 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072 17-03-17 23:45:42.178 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072 17-03-17 23:45:42.178 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:45:42.178 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:45:42.178 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) start. 17-03-17 23:45:42.368 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP 2265 17-03-17 23:45:42.478 -07 000000561 INF: FPGA: Recv CAMDBLSNAP 17-03-17 23:45:42.478 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 37527 150' command took 2 ms to send, 2378 ms to get response, and 2387 ms overall 17-03-17 23:45:42.488 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-17 23:45:42.488 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73291015625, Z-Position -0.170997537385346. ------ 17-03-17 23:45:42.488 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:45:42.488 -07 000000627 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.17767 mm 17-03-17 23:45:42.488 -07 000000627 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 23:45:42.488 -07 000000409 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True) 17-03-17 23:45:42.488 -07 000000409 INF: Y Motor: Moving to 61.5726 mm, started at 60.7329 mm, delta = 0.8397 mm 17-03-17 23:45:42.488 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 38811, sync = True, waitForSettling = False) 17-03-17 23:45:42.488 -07 000000561 INF: Z Motor: Moving to -0.177665 mm, started at -0.170998 mm, distance = -6.67 um 17-03-17 23:45:42.488 -07 000000482 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:45:42.498 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-17 23:45:42.498 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:45:42.498 -07 000000480 INF: FPGA: Recv YRDPOS 124382 17-03-17 23:45:42.508 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall 17-03-17 23:45:42.508 -07 000000561 INF: FPGA: Xmit ZDACW 38811\n [Z Motor] 17-03-17 23:45:42.508 -07 000000409 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:45:42.508 -07 000000448 INF: FPGA: Recv ZDACW 17-03-17 23:45:42.508 -07 000000409 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 23:45:42.508 -07 000000409 INF: Y Motor: Moving 1343 steps-20 17-03-17 23:45:42.518 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 23:45:42.518 -07 000000561 INF: FPGA: 'ZDACW 38811' command took 0 ms to send, 0 ms to get response, and 22 ms overall 17-03-17 23:45:42.528 -07 000000409 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 23:45:42.538 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:45:42.538 -07 000000480 INF: FPGA: Recv ZDACR 38811 17-03-17 23:45:42.548 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-17 23:45:42.548 -07 000000561 INF: Z Motor: MoveAbsStepped took 52 ms (did NOT wait for settling yet)) 17-03-17 23:45:42.578 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1113297000, 0x0, 391868352) end. Duration was 401 ms. 17-03-17 23:45:42.578 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms. 17-03-17 23:45:42.578 -07 000000438 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:45:42.578 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1148719264, 0x0, 418435064) end. Duration was 399 ms. 17-03-17 23:45:42.578 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms. 17-03-17 23:45:42.578 -07 000000486 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:45:42.578 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:45:42.588 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms. 17-03-17 23:45:42.588 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms. 17-03-17 23:45:42.588 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms. 17-03-17 23:45:42.718 -07 000000547 INF: FPGA: Recv FOCMRRFOC 17-03-17 23:45:42.718 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 222 ms overall 17-03-17 23:45:42.798 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 78, FrontChillerTemperature: 3.986717, 17-03-17 23:45:42.908 -07 000000486 INF: FPGA: Recv YMVTILE 17-03-17 23:45:42.908 -07 000000409 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 394 ms overall 17-03-17 23:45:42.948 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:45:42.948 -07 000000448 INF: FPGA: Recv YRDPOS 126082 17-03-17 23:45:42.958 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:45:42.958 -07 000000409 INF: Y Motor: Encoder = 126082 = motor step 98501.6 = 61.5635 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:45:42.958 -07 000000409 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm) 17-03-17 23:45:42.958 -07 000000409 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 394 ms, distance = 0.840 mm, average velocity = 2.131 mm/sec 17-03-17 23:45:43.908 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:45:43.908 -07 000000512 INF: FPGA: Recv YRDPOS 126083 17-03-17 23:45:43.918 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:43.918 -07 000000409 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:45:43.938 -07 000000409 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 23:45:43.938 -07 000000409 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 1 counts (0.000 mm) 17-03-17 23:45:43.938 -07 000000409 INF: Y Motor: Moved to 61.5640 after 1449 ms (table move) 17-03-17 23:45:43.948 -07 000000627 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177665 mm (DAC = 38811) 17-03-17 23:45:43.948 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:43.948 -07 000000480 INF: FPGA: Recv ZSGSRD 36951 17-03-17 23:45:43.958 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:43.958 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:43.958 -07 000000541 INF: FPGA: Recv ZSGSRD 36948 17-03-17 23:45:43.968 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:43.968 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:43.968 -07 000000433 INF: FPGA: Recv ZSGSRD 36941 17-03-17 23:45:43.978 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:43.978 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:43.978 -07 000000409 INF: FPGA: Recv ZSGSRD 36937 17-03-17 23:45:43.988 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:43.988 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:43.988 -07 000000502 INF: FPGA: Recv ZSGSRD 36940 17-03-17 23:45:43.998 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:43.998 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:43.998 -07 000000618 INF: FPGA: Recv ZSGSRD 36950 17-03-17 23:45:44.008 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:44.008 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:44.008 -07 000000438 INF: FPGA: Recv ZSGSRD 36956 17-03-17 23:45:44.018 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:44.018 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:44.018 -07 000000459 INF: FPGA: Recv ZSGSRD 36945 17-03-17 23:45:44.028 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:44.028 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:44.028 -07 000000480 INF: FPGA: Recv ZSGSRD 36949 17-03-17 23:45:44.038 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:44.038 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:44.038 -07 000000541 INF: FPGA: Recv ZSGSRD 36944 17-03-17 23:45:44.048 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:44.048 -07 000000627 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:45:44.048 -07 000000409 INF: FPGA: Recv ZPIEZORD 33103 17-03-17 23:45:44.058 -07 000000627 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:44.058 -07 000000627 INF: Z Motor: Piezo is near 50.7 V (nominally 0 to 100 V), expect near 59.2 V, since DAC is at 5.922 V. Piezo Error = -8.5 V. 17-03-17 23:45:44.058 -07 000000627 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.7 um, Read 10 ADC samples: Avg = 36946 (-176.8 uncal um), Error = 0.9 uncal um, Median = 36946 (-176.8 uncal um), StdDev = 6 (0.0 uncal um), Range = 19 (0.1 uncal um), Min = 36937 (-176.7 uncal um), Max = 36956 (-176.8 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um) 17-03-17 23:45:44.058 -07 000000627 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36946, posNoise = 10, negNoise = 9 17-03-17 23:45:44.058 -07 000000627 INF: Z Motor: After move to -0.177665, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:45:44.058 -07 000000627 INF: Z Motor: Settle wait time = 1452 ms, measure time = 111 ms (allowed 150 ms), total time = 1563 ms 17-03-17 23:45:44.058 -07 000000627 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms 17-03-17 23:45:44.098 -07 000000627 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1605 ms 17-03-17 23:45:44.098 -07 000000627 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 23:45:44.098 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:45:44.098 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:45:44.098 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:45:44.098 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:45:44.098 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 23:45:44.098 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:45:44.108 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:45:44.108 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 23:45:44.108 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-17 23:45:44.108 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 23:45:44.118 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms. 17-03-17 23:45:44.118 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms. 17-03-17 23:45:44.118 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:45:44.158 -07 000000433 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 23:45:44.458 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-17 23:45:44.458 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-17 23:45:44.458 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 23:45:44.458 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start. 17-03-17 23:45:44.498 -07 000000486 INF: FPGA: Recv @CAMSNAP 380 17-03-17 23:45:44.498 -07 000000459 INF: FPGA: Recv CAMSNAP 17-03-17 23:45:44.498 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall 17-03-17 23:45:44.588 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 121 ms. 17-03-17 23:45:44.588 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:45:44.588 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-17 23:45:44.588 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 124 ms. 17-03-17 23:45:44.598 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:45:44.598 -07 000000576 INF: Autofocus start 17-03-17 23:45:44.598 -07 000000576 INF: MeasureProfile start 17-03-17 23:45:44.598 -07 000000486 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:45:44.608 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 23:45:44.608 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 23:45:44.608 -07 000000576 INF: MeasureProfile done 17-03-17 23:45:44.608 -07 000000576 INF: X=0 Z correction [um]=-0.0713522 17-03-17 23:45:44.608 -07 000000576 INF: Autofocus finished 17-03-17 23:45:44.808 -07 000000618 INF: FPGA: Recv FOCMRRIMG 17-03-17 23:45:44.808 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 23:45:44.808 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.177672293800635. ---------- 17-03-17 23:45:44.808 -07 000000610 INF: Cycle 78 Tile 3 Exposure Settings A 1037 G 500 T 500 C 1037 17-03-17 23:45:44.818 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37308, sync = True, waitForSettling = True) 17-03-17 23:45:44.818 -07 000000610 INF: Z Motor: Moving to -0.170785 mm, started at -0.177672 mm, distance = 6.89 um 17-03-17 23:45:44.818 -07 000000610 INF: FPGA: Xmit ZDACW 37308\n [Z Motor] 17-03-17 23:45:44.818 -07 000000409 INF: FPGA: Recv ZDACW 17-03-17 23:45:44.828 -07 000000610 INF: FPGA: 'ZDACW 37308' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:45:44.828 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:45:44.828 -07 000000502 INF: FPGA: Recv ZDACR 37308 17-03-17 23:45:44.838 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:44.838 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:45:44.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:44.988 -07 000000541 INF: FPGA: Recv ZSGSRD 35874 17-03-17 23:45:44.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:45:44.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:44.998 -07 000000448 INF: FPGA: Recv ZSGSRD 35873 17-03-17 23:45:45.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:45.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:45.008 -07 000000561 INF: FPGA: Recv ZSGSRD 35879 17-03-17 23:45:45.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:45.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:45.018 -07 000000433 INF: FPGA: Recv ZSGSRD 35867 17-03-17 23:45:45.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:45.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:45.028 -07 000000502 INF: FPGA: Recv ZSGSRD 35882 17-03-17 23:45:45.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:45.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:45.038 -07 000000541 INF: FPGA: Recv ZSGSRD 35876 17-03-17 23:45:45.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:45.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:45.048 -07 000000448 INF: FPGA: Recv ZSGSRD 35872 17-03-17 23:45:45.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:45.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:45.058 -07 000000576 INF: FPGA: Recv ZSGSRD 35880 17-03-17 23:45:45.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:45.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:45.068 -07 000000627 INF: FPGA: Recv ZSGSRD 35871 17-03-17 23:45:45.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:45.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:45.078 -07 000000561 INF: FPGA: Recv ZSGSRD 35881 17-03-17 23:45:45.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:45.088 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:45:45.088 -07 000000475 INF: FPGA: Recv ZPIEZORD 31627 17-03-17 23:45:45.098 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:45.098 -07 000000610 INF: Z Motor: Piezo is near 47.6 V (nominally 0 to 100 V), expect near 56.9 V, since DAC is at 5.693 V. Piezo Error = -9.4 V. 17-03-17 23:45:45.098 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.8 um, Read 10 ADC samples: Avg = 35876 (-169.9 uncal um), Error = 0.9 uncal um, Median = 35875 (-169.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35867 (-169.9 uncal um), Max = 35882 (-170.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um) 17-03-17 23:45:45.098 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35876, posNoise = 6, negNoise = 9 17-03-17 23:45:45.098 -07 000000610 INF: Z Motor: After move to -0.170785, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:45:45.098 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms) 17-03-17 23:45:45.098 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:45:45.098 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:45:45.098 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:45:45.098 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:45:45.098 -07 000000409 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 23:45:45.098 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:45:45.098 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 23:45:45.098 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 23:45:45.098 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:45:45.098 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 23:45:45.098 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-17 23:45:45.098 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 23:45:45.108 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-17 23:45:45.108 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 23:45:45.108 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms. 17-03-17 23:45:45.108 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 23:45:45.118 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms. 17-03-17 23:45:45.118 -07 000000409 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms. 17-03-17 23:45:45.118 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms. 17-03-17 23:45:45.118 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms. 17-03-17 23:45:45.118 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 37485 150\n [Camera] 17-03-17 23:45:45.328 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 23:45:46.358 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229 17-03-17 23:45:46.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229 17-03-17 23:45:46.368 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:45:46.368 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229 17-03-17 23:45:46.368 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229 17-03-17 23:45:46.368 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:45:46.368 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:45:46.368 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) start. 17-03-17 23:45:46.368 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:45:46.368 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start. 17-03-17 23:45:46.558 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37485 1422 17-03-17 23:45:46.708 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572 17-03-17 23:45:46.758 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1389170736, 0x0, 418435064) end. Duration was 388 ms. 17-03-17 23:45:46.758 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 388 ms. 17-03-17 23:45:46.758 -07 000000482 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:45:46.758 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:45:46.758 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 389 ms. 17-03-17 23:45:46.758 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 390 ms. 17-03-17 23:45:46.758 -07 000000547 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:45:46.768 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:45:46.768 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms. 17-03-17 23:45:46.768 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 399 ms. 17-03-17 23:45:47.098 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:45:47.098 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 77. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1270, R2=1321, Total=2591. Warn if over 250 bubbles per interval. 17-03-17 23:45:47.208 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072 17-03-17 23:45:47.208 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072 17-03-17 23:45:47.208 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:45:47.208 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:45:47.208 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) start. 17-03-17 23:45:47.208 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072 17-03-17 23:45:47.208 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072 17-03-17 23:45:47.208 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:45:47.208 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:45:47.208 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) start. 17-03-17 23:45:47.398 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 2264 17-03-17 23:45:47.398 -07 000000502 INF: FPGA: Recv CAMDBLSNAP 17-03-17 23:45:47.398 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 37485 150' command took 2 ms to send, 2264 ms to get response, and 2274 ms overall 17-03-17 23:45:47.398 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-17 23:45:47.398 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56396484375, Z-Position -0.170798386808951. ------ 17-03-17 23:45:47.408 -07 000000409 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.17710 mm 17-03-17 23:45:47.408 -07 000000409 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 23:45:47.408 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:45:47.408 -07 000000627 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True) 17-03-17 23:45:47.408 -07 000000627 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm 17-03-17 23:45:47.408 -07 000000547 INF: Z Motor: Entering MoveAbsStepped (DAC = 38688, sync = True, waitForSettling = False) 17-03-17 23:45:47.408 -07 000000547 INF: Z Motor: Moving to -0.177102 mm, started at -0.170798 mm, distance = -6.30 um 17-03-17 23:45:47.408 -07 000000576 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:45:47.418 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:45:47.418 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 23:45:47.428 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:45:47.428 -07 000000475 INF: FPGA: Recv YRDPOS 126083 17-03-17 23:45:47.438 -07 000000547 INF: FPGA: Xmit ZDACW 38688\n [Z Motor] 17-03-17 23:45:47.438 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 25 ms overall 17-03-17 23:45:47.438 -07 000000627 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:45:47.438 -07 000000627 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 23:45:47.438 -07 000000627 INF: Y Motor: Moving 1342 steps-19 17-03-17 23:45:47.438 -07 000000482 INF: FPGA: Recv ZDACW 17-03-17 23:45:47.448 -07 000000547 INF: FPGA: 'ZDACW 38688' command took 0 ms to send, 0 ms to get response, and 35 ms overall 17-03-17 23:45:47.448 -07 000000547 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:45:47.448 -07 000000512 INF: FPGA: Recv ZDACR 38688 17-03-17 23:45:47.458 -07 000000627 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 23:45:47.458 -07 000000547 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:47.458 -07 000000547 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet)) 17-03-17 23:45:47.598 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1460015264, 0x0, 418435064) end. Duration was 384 ms. 17-03-17 23:45:47.598 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms. 17-03-17 23:45:47.598 -07 000000448 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:45:47.598 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:45:47.598 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1424593000, 0x0, 391868352) end. Duration was 395 ms. 17-03-17 23:45:47.598 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms. 17-03-17 23:45:47.598 -07 000000438 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:45:47.608 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms. 17-03-17 23:45:47.608 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms. 17-03-17 23:45:47.608 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms. 17-03-17 23:45:47.618 -07 000000541 INF: FPGA: Recv FOCMRRFOC 17-03-17 23:45:47.618 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 203 ms overall 17-03-17 23:45:47.828 -07 000000459 INF: FPGA: Recv YMVTILE 17-03-17 23:45:47.828 -07 000000627 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall 17-03-17 23:45:47.878 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:45:47.878 -07 000000576 INF: FPGA: Recv YRDPOS 127786 17-03-17 23:45:47.888 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:45:47.888 -07 000000627 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:45:47.888 -07 000000627 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm) 17-03-17 23:45:47.888 -07 000000627 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.839 mm, average velocity = 2.107 mm/sec 17-03-17 23:45:48.168 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 78, FrontChillerTemperature: 3.96762, 17-03-17 23:45:48.838 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:45:48.838 -07 000000623 INF: FPGA: Recv YRDPOS 127786 17-03-17 23:45:48.848 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:48.848 -07 000000627 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:45:48.868 -07 000000627 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 23:45:48.868 -07 000000627 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm) 17-03-17 23:45:48.868 -07 000000627 INF: Y Motor: Moved to 62.3955 after 1461 ms (table move) 17-03-17 23:45:48.868 -07 000000409 INF: Z Motor: EndOfMoveAbsStepped: target = -0.177102 mm (DAC = 38688) 17-03-17 23:45:48.868 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:48.878 -07 000000618 INF: FPGA: Recv ZSGSRD 36865 17-03-17 23:45:48.878 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall 17-03-17 23:45:48.878 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:48.878 -07 000000459 INF: FPGA: Recv ZSGSRD 36852 17-03-17 23:45:48.888 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:45:48.888 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:48.888 -07 000000561 INF: FPGA: Recv ZSGSRD 36857 17-03-17 23:45:48.898 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:48.898 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:48.898 -07 000000512 INF: FPGA: Recv ZSGSRD 36865 17-03-17 23:45:48.908 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:48.908 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:48.908 -07 000000482 INF: FPGA: Recv ZSGSRD 36860 17-03-17 23:45:48.918 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:48.918 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:48.918 -07 000000459 INF: FPGA: Recv ZSGSRD 36856 17-03-17 23:45:48.928 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:48.928 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:48.928 -07 000000502 INF: FPGA: Recv ZSGSRD 36861 17-03-17 23:45:48.938 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:48.938 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:48.938 -07 000000547 INF: FPGA: Recv ZSGSRD 36854 17-03-17 23:45:48.948 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:48.948 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:48.948 -07 000000482 INF: FPGA: Recv ZSGSRD 36858 17-03-17 23:45:48.958 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:48.958 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:48.958 -07 000000480 INF: FPGA: Recv ZSGSRD 36858 17-03-17 23:45:48.968 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:48.968 -07 000000409 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:45:48.968 -07 000000502 INF: FPGA: Recv ZPIEZORD 32968 17-03-17 23:45:48.978 -07 000000409 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:48.978 -07 000000409 INF: Z Motor: Piezo is near 50.4 V (nominally 0 to 100 V), expect near 59.0 V, since DAC is at 5.903 V. Piezo Error = -8.6 V. 17-03-17 23:45:48.978 -07 000000409 INF: Z Motor: ReadAdcAverage: Commanded Z = -177.1 um, Read 10 ADC samples: Avg = 36859 (-176.2 uncal um), Error = 0.9 uncal um, Median = 36858 (-176.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36852 (-176.2 uncal um), Max = 36865 (-176.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um) 17-03-17 23:45:48.978 -07 000000409 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36859, posNoise = 6, negNoise = 7 17-03-17 23:45:48.978 -07 000000409 INF: Z Motor: After move to -0.177102, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:45:48.978 -07 000000409 INF: Z Motor: Settle wait time = 1464 ms, measure time = 103 ms (allowed 150 ms), total time = 1567 ms 17-03-17 23:45:48.978 -07 000000409 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms 17-03-17 23:45:49.028 -07 000000409 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1618 ms 17-03-17 23:45:49.028 -07 000000409 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 23:45:49.028 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:45:49.028 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:45:49.028 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:45:49.028 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 23:45:49.028 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:45:49.028 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:45:49.028 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-17 23:45:49.028 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 23:45:49.028 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-17 23:45:49.038 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 23:45:49.038 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms. 17-03-17 23:45:49.038 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms. 17-03-17 23:45:49.048 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:45:49.088 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 23:45:49.388 -07 000000486 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-17 23:45:49.388 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-17 23:45:49.388 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 23:45:49.388 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 615841328, 0x0, 559484976) start. 17-03-17 23:45:49.428 -07 000000561 INF: FPGA: Recv @CAMSNAP 383 17-03-17 23:45:49.428 -07 000000541 INF: FPGA: Recv CAMSNAP 17-03-17 23:45:49.428 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 387 ms overall 17-03-17 23:45:49.508 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 615841328, 0x0, 559484976) end. Duration was 118 ms. 17-03-17 23:45:49.508 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:45:49.508 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-17 23:45:49.508 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 121 ms. 17-03-17 23:45:49.528 -07 000000409 INF: Autofocus start 17-03-17 23:45:49.528 -07 000000409 INF: MeasureProfile start 17-03-17 23:45:49.528 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:45:49.528 -07 000000475 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:45:49.538 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 23:45:49.538 -07 000000433 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 23:45:49.538 -07 000000409 INF: MeasureProfile done 17-03-17 23:45:49.538 -07 000000409 INF: X=0 Z correction [um]=-0.0713522 17-03-17 23:45:49.538 -07 000000409 INF: Autofocus finished 17-03-17 23:45:49.738 -07 000000561 INF: FPGA: Recv FOCMRRIMG 17-03-17 23:45:49.738 -07 000000433 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 23:45:49.738 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.177113387344302. ---------- 17-03-17 23:45:49.748 -07 000000610 INF: Cycle 78 Tile 4 Exposure Settings A 1037 G 500 T 500 C 1037 17-03-17 23:45:49.748 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37185, sync = True, waitForSettling = True) 17-03-17 23:45:49.748 -07 000000610 INF: Z Motor: Moving to -0.170222 mm, started at -0.177113 mm, distance = 6.89 um 17-03-17 23:45:49.748 -07 000000610 INF: FPGA: Xmit ZDACW 37185\n [Z Motor] 17-03-17 23:45:49.748 -07 000000502 INF: FPGA: Recv ZDACW 17-03-17 23:45:49.758 -07 000000610 INF: FPGA: 'ZDACW 37185' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:45:49.758 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:45:49.758 -07 000000433 INF: FPGA: Recv ZDACR 37185 17-03-17 23:45:49.768 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:49.768 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:45:49.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:49.918 -07 000000627 INF: FPGA: Recv ZSGSRD 35787 17-03-17 23:45:49.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:45:49.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:49.928 -07 000000486 INF: FPGA: Recv ZSGSRD 35788 17-03-17 23:45:49.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:49.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:49.938 -07 000000438 INF: FPGA: Recv ZSGSRD 35792 17-03-17 23:45:49.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:49.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:49.948 -07 000000618 INF: FPGA: Recv ZSGSRD 35787 17-03-17 23:45:49.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:49.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:49.958 -07 000000475 INF: FPGA: Recv ZSGSRD 35789 17-03-17 23:45:49.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:49.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:49.968 -07 000000486 INF: FPGA: Recv ZSGSRD 35789 17-03-17 23:45:49.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:49.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:49.978 -07 000000459 INF: FPGA: Recv ZSGSRD 35791 17-03-17 23:45:49.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:49.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:49.988 -07 000000627 INF: FPGA: Recv ZSGSRD 35790 17-03-17 23:45:49.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:49.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:49.998 -07 000000618 INF: FPGA: Recv ZSGSRD 35785 17-03-17 23:45:50.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:50.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:50.008 -07 000000433 INF: FPGA: Recv ZSGSRD 35787 17-03-17 23:45:50.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:50.018 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:45:50.018 -07 000000438 INF: FPGA: Recv ZPIEZORD 31563 17-03-17 23:45:50.028 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:50.028 -07 000000610 INF: Z Motor: Piezo is near 47.4 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.674 V. Piezo Error = -9.3 V. 17-03-17 23:45:50.028 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.2 um, Read 10 ADC samples: Avg = 35788 (-169.4 uncal um), Error = 0.9 uncal um, Median = 35788 (-169.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35785 (-169.3 uncal um), Max = 35792 (-169.4 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um) 17-03-17 23:45:50.028 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35788, posNoise = 4, negNoise = 3 17-03-17 23:45:50.028 -07 000000610 INF: Z Motor: After move to -0.170222, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:45:50.028 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms) 17-03-17 23:45:50.028 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:45:50.028 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:45:50.028 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:45:50.028 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:45:50.028 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 23:45:50.028 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:45:50.028 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 23:45:50.028 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 23:45:50.028 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:45:50.028 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 23:45:50.028 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-17 23:45:50.028 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 23:45:50.028 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-17 23:45:50.028 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 23:45:50.038 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-17 23:45:50.038 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 23:45:50.048 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms. 17-03-17 23:45:50.048 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms. 17-03-17 23:45:50.048 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms. 17-03-17 23:45:50.048 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms. 17-03-17 23:45:50.048 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 37361 150\n [Camera] 17-03-17 23:45:50.248 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 23:45:51.288 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229 17-03-17 23:45:51.288 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229 17-03-17 23:45:51.288 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:45:51.288 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:45:51.288 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start. 17-03-17 23:45:51.288 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229 17-03-17 23:45:51.298 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229 17-03-17 23:45:51.298 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:45:51.298 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:45:51.298 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start. 17-03-17 23:45:51.478 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37361 1422 17-03-17 23:45:51.638 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1574 17-03-17 23:45:51.688 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 392 ms. 17-03-17 23:45:51.688 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms. 17-03-17 23:45:51.688 -07 000000541 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:45:51.688 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 396 ms. 17-03-17 23:45:51.688 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms. 17-03-17 23:45:51.688 -07 000000627 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:45:51.688 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:45:51.688 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:45:51.688 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms. 17-03-17 23:45:51.698 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms. 17-03-17 23:45:52.098 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:45:52.098 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 77. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1270, R2=1321, Total=2591. Warn if over 250 bubbles per interval. 17-03-17 23:45:52.138 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2074 17-03-17 23:45:52.138 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2074 17-03-17 23:45:52.138 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:45:52.138 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:45:52.138 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start. 17-03-17 23:45:52.138 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2074 17-03-17 23:45:52.138 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2074 17-03-17 23:45:52.138 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:45:52.138 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:45:52.138 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start. 17-03-17 23:45:52.328 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 2264 17-03-17 23:45:52.328 -07 000000576 INF: FPGA: Recv CAMDBLSNAP 17-03-17 23:45:52.328 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 37361 150' command took 2 ms to send, 2261 ms to get response, and 2272 ms overall 17-03-17 23:45:52.448 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-17 23:45:52.448 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.3955078125, Z-Position -0.170233056140476. ------ 17-03-17 23:45:52.448 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:45:52.448 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.17680 mm 17-03-17 23:45:52.448 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 23:45:52.448 -07 000000547 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:45:52.448 -07 000000475 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True) 17-03-17 23:45:52.448 -07 000000475 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm 17-03-17 23:45:52.458 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-17 23:45:52.458 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:45:52.458 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 38621, sync = True, waitForSettling = False) 17-03-17 23:45:52.458 -07 000000438 INF: Z Motor: Moving to -0.176796 mm, started at -0.170233 mm, distance = -6.56 um 17-03-17 23:45:52.458 -07 000000502 INF: FPGA: Recv YRDPOS 127786 17-03-17 23:45:52.468 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:45:52.468 -07 000000475 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:45:52.468 -07 000000475 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 23:45:52.468 -07 000000475 INF: Y Motor: Moving 1339 steps-15 17-03-17 23:45:52.468 -07 000000459 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 23:45:52.478 -07 000000438 INF: FPGA: Xmit ZDACW 38621\n [Z Motor] 17-03-17 23:45:52.478 -07 000000627 INF: FPGA: Recv ZDACW 17-03-17 23:45:52.488 -07 000000475 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 23:45:52.488 -07 000000438 INF: FPGA: 'ZDACW 38621' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-17 23:45:52.498 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:45:52.498 -07 000000576 INF: FPGA: Recv ZDACR 38621 17-03-17 23:45:52.508 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-17 23:45:52.508 -07 000000438 INF: Z Motor: MoveAbsStepped took 49 ms (did NOT wait for settling yet)) 17-03-17 23:45:52.538 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 400 ms. 17-03-17 23:45:52.538 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms. 17-03-17 23:45:52.538 -07 000000541 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:45:52.538 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 399 ms. 17-03-17 23:45:52.538 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms. 17-03-17 23:45:52.538 -07 000000480 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:45:52.538 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:45:52.548 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms. 17-03-17 23:45:52.548 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms. 17-03-17 23:45:52.548 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms. 17-03-17 23:45:52.668 -07 000000547 INF: FPGA: Recv FOCMRRFOC 17-03-17 23:45:52.668 -07 000000459 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall 17-03-17 23:45:52.858 -07 000000486 INF: FPGA: Recv YMVTILE 17-03-17 23:45:52.858 -07 000000475 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall 17-03-17 23:45:52.898 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:45:52.908 -07 000000547 INF: FPGA: Recv YRDPOS 129483 17-03-17 23:45:52.908 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall 17-03-17 23:45:52.908 -07 000000475 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:45:52.908 -07 000000475 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm) 17-03-17 23:45:52.908 -07 000000475 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.837 mm, average velocity = 2.109 mm/sec 17-03-17 23:45:53.538 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 78, FrontChillerTemperature: 3.979922, 17-03-17 23:45:53.858 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:45:53.858 -07 000000623 INF: FPGA: Recv YRDPOS 129483 17-03-17 23:45:53.868 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:45:53.868 -07 000000475 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:45:53.898 -07 000000475 INF: Y Motor: After move to 63.232609, error = -0.008488, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 23:45:53.898 -07 000000475 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm) 17-03-17 23:45:53.898 -07 000000475 INF: Y Motor: Moved to 63.2241 after 1449 ms (table move) 17-03-17 23:45:53.908 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176796 mm (DAC = 38621) 17-03-17 23:45:53.908 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:53.908 -07 000000541 INF: FPGA: Recv ZSGSRD 36807 17-03-17 23:45:53.918 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-17 23:45:53.918 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:53.918 -07 000000433 INF: FPGA: Recv ZSGSRD 36805 17-03-17 23:45:53.928 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:53.928 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:53.928 -07 000000475 INF: FPGA: Recv ZSGSRD 36810 17-03-17 23:45:53.938 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:53.938 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:53.938 -07 000000409 INF: FPGA: Recv ZSGSRD 36813 17-03-17 23:45:53.948 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:53.948 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:53.948 -07 000000576 INF: FPGA: Recv ZSGSRD 36812 17-03-17 23:45:53.958 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:53.958 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:53.958 -07 000000561 INF: FPGA: Recv ZSGSRD 36804 17-03-17 23:45:53.968 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:53.968 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:53.968 -07 000000448 INF: FPGA: Recv ZSGSRD 36809 17-03-17 23:45:53.978 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:53.978 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:53.978 -07 000000475 INF: FPGA: Recv ZSGSRD 36811 17-03-17 23:45:53.988 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:53.988 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:53.988 -07 000000438 INF: FPGA: Recv ZSGSRD 36809 17-03-17 23:45:53.998 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:53.998 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:53.998 -07 000000480 INF: FPGA: Recv ZSGSRD 36808 17-03-17 23:45:54.008 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:54.008 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:45:54.008 -07 000000627 INF: FPGA: Recv ZPIEZORD 32909 17-03-17 23:45:54.018 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:54.018 -07 000000618 INF: Z Motor: Piezo is near 50.3 V (nominally 0 to 100 V), expect near 58.9 V, since DAC is at 5.893 V. Piezo Error = -8.6 V. 17-03-17 23:45:54.018 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.8 um, Read 10 ADC samples: Avg = 36809 (-175.9 uncal um), Error = 0.9 uncal um, Median = 36809 (-175.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36804 (-175.9 uncal um), Max = 36813 (-175.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-17 23:45:54.018 -07 000000618 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36809, posNoise = 4, negNoise = 5 17-03-17 23:45:54.018 -07 000000618 INF: Z Motor: After move to -0.176796, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:45:54.018 -07 000000618 INF: Z Motor: Settle wait time = 1454 ms, measure time = 105 ms (allowed 150 ms), total time = 1559 ms 17-03-17 23:45:54.018 -07 000000618 INF: Z Motor: Waiting extra 45 ms after reading position to reach expected total of 150 ms 17-03-17 23:45:54.068 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1613 ms 17-03-17 23:45:54.068 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 23:45:54.068 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:45:54.068 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:45:54.068 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:45:54.068 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:45:54.068 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 23:45:54.068 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:45:54.078 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:45:54.078 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 23:45:54.078 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-17 23:45:54.078 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 23:45:54.088 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms. 17-03-17 23:45:54.088 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms. 17-03-17 23:45:54.088 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:45:54.138 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 43 17-03-17 23:45:54.438 -07 000000448 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-17 23:45:54.438 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-17 23:45:54.438 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 23:45:54.438 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start. 17-03-17 23:45:54.468 -07 000000618 INF: FPGA: Recv @CAMSNAP 380 17-03-17 23:45:54.468 -07 000000627 INF: FPGA: Recv CAMSNAP 17-03-17 23:45:54.468 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall 17-03-17 23:45:54.548 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms. 17-03-17 23:45:54.548 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:45:54.548 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-17 23:45:54.548 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms. 17-03-17 23:45:54.568 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:45:54.568 -07 000000480 INF: Autofocus start 17-03-17 23:45:54.568 -07 000000480 INF: MeasureProfile start 17-03-17 23:45:54.568 -07 000000623 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:45:54.578 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-17 23:45:54.578 -07 000000482 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 23:45:54.578 -07 000000480 INF: MeasureProfile done 17-03-17 23:45:54.578 -07 000000480 INF: X=32 Z correction [um]=0.09220707 17-03-17 23:45:54.578 -07 000000480 INF: Autofocus finished 17-03-17 23:45:54.778 -07 000000512 INF: FPGA: Recv FOCMRRIMG 17-03-17 23:45:54.778 -07 000000482 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 23:45:54.778 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22412109375, Z-position -0.176792176737214. ---------- 17-03-17 23:45:54.778 -07 000000610 INF: Cycle 78 Tile 5 Exposure Settings A 1037 G 500 T 500 C 1037 17-03-17 23:45:54.788 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37154, sync = True, waitForSettling = True) 17-03-17 23:45:54.788 -07 000000610 INF: Z Motor: Moving to -0.170080 mm, started at -0.176792 mm, distance = 6.71 um 17-03-17 23:45:54.788 -07 000000610 INF: FPGA: Xmit ZDACW 37154\n [Z Motor] 17-03-17 23:45:54.788 -07 000000618 INF: FPGA: Recv ZDACW 17-03-17 23:45:54.798 -07 000000610 INF: FPGA: 'ZDACW 37154' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:45:54.798 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:45:54.798 -07 000000486 INF: FPGA: Recv ZDACR 37154 17-03-17 23:45:54.808 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:54.808 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:45:54.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:54.958 -07 000000433 INF: FPGA: Recv ZSGSRD 35769 17-03-17 23:45:54.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:45:54.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:54.968 -07 000000576 INF: FPGA: Recv ZSGSRD 35764 17-03-17 23:45:54.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:54.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:54.978 -07 000000448 INF: FPGA: Recv ZSGSRD 35769 17-03-17 23:45:54.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:54.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:54.988 -07 000000438 INF: FPGA: Recv ZSGSRD 35767 17-03-17 23:45:54.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:54.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:54.998 -07 000000561 INF: FPGA: Recv ZSGSRD 35765 17-03-17 23:45:55.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:55.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:55.008 -07 000000433 INF: FPGA: Recv ZSGSRD 35767 17-03-17 23:45:55.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:55.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:55.018 -07 000000576 INF: FPGA: Recv ZSGSRD 35764 17-03-17 23:45:55.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:55.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:55.028 -07 000000448 INF: FPGA: Recv ZSGSRD 35764 17-03-17 23:45:55.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:55.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:55.038 -07 000000438 INF: FPGA: Recv ZSGSRD 35766 17-03-17 23:45:55.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:55.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:55.048 -07 000000486 INF: FPGA: Recv ZSGSRD 35761 17-03-17 23:45:55.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:55.058 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:45:55.058 -07 000000512 INF: FPGA: Recv ZPIEZORD 31506 17-03-17 23:45:55.068 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:55.068 -07 000000610 INF: Z Motor: Piezo is near 47.3 V (nominally 0 to 100 V), expect near 56.7 V, since DAC is at 5.669 V. Piezo Error = -9.4 V. 17-03-17 23:45:55.068 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -170.1 um, Read 10 ADC samples: Avg = 35766 (-169.2 uncal um), Error = 0.9 uncal um, Median = 35766 (-169.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35761 (-169.2 uncal um), Max = 35769 (-169.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-17 23:45:55.068 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35766, posNoise = 3, negNoise = 5 17-03-17 23:45:55.068 -07 000000610 INF: Z Motor: After move to -0.170080, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:45:55.068 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms) 17-03-17 23:45:55.068 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:45:55.068 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:45:55.068 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:45:55.068 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:45:55.068 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 23:45:55.068 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:45:55.068 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 23:45:55.068 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 23:45:55.068 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:45:55.068 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 23:45:55.068 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-17 23:45:55.068 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 23:45:55.078 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-17 23:45:55.078 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 23:45:55.078 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-17 23:45:55.078 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 23:45:55.088 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms. 17-03-17 23:45:55.088 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms. 17-03-17 23:45:55.088 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms. 17-03-17 23:45:55.088 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms. 17-03-17 23:45:55.098 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 37330 150\n [Camera] 17-03-17 23:45:55.298 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 23:45:56.338 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229 17-03-17 23:45:56.338 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229 17-03-17 23:45:56.338 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:45:56.338 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229 17-03-17 23:45:56.338 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229 17-03-17 23:45:56.338 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:45:56.338 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:45:56.338 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start. 17-03-17 23:45:56.348 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:45:56.348 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start. 17-03-17 23:45:56.528 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37330 1422 17-03-17 23:45:56.678 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572 17-03-17 23:45:56.738 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 395 ms. 17-03-17 23:45:56.738 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms. 17-03-17 23:45:56.738 -07 000000576 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:45:56.738 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:45:56.738 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms. 17-03-17 23:45:56.748 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 396 ms. 17-03-17 23:45:56.748 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms. 17-03-17 23:45:56.748 -07 000000486 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:45:56.748 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:45:56.758 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 417 ms. 17-03-17 23:45:57.098 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:45:57.098 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 77. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1270, R2=1321, Total=2591. Warn if over 250 bubbles per interval. 17-03-17 23:45:57.178 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072 17-03-17 23:45:57.178 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072 17-03-17 23:45:57.178 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:45:57.178 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072 17-03-17 23:45:57.178 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072 17-03-17 23:45:57.178 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:45:57.188 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:45:57.188 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start. 17-03-17 23:45:57.188 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:45:57.188 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start. 17-03-17 23:45:57.368 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 2265 17-03-17 23:45:57.368 -07 000000459 INF: FPGA: Recv CAMDBLSNAP 17-03-17 23:45:57.368 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 37330 150' command took 2 ms to send, 2262 ms to get response, and 2272 ms overall 17-03-17 23:45:57.368 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-17 23:45:57.368 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22412109375, Z-Position -0.170091723473357. ------ 17-03-17 23:45:57.368 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:45:57.368 -07 000000627 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.17660 mm 17-03-17 23:45:57.368 -07 000000627 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 23:45:57.498 -07 000000482 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:45:57.498 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 124 ms overall 17-03-17 23:45:57.498 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 23:45:57.498 -07 000000433 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True) 17-03-17 23:45:57.498 -07 000000433 INF: Y Motor: Moving to 64.0626 mm, started at 63.2241 mm, delta = 0.8385 mm 17-03-17 23:45:57.498 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 38579, sync = True, waitForSettling = False) 17-03-17 23:45:57.498 -07 000000561 INF: Z Motor: Moving to -0.176603 mm, started at -0.170092 mm, distance = -6.51 um 17-03-17 23:45:57.508 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:45:57.508 -07 000000482 INF: FPGA: Recv YRDPOS 129483 17-03-17 23:45:57.518 -07 000000561 INF: FPGA: Xmit ZDACW 38579\n [Z Motor] 17-03-17 23:45:57.518 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall 17-03-17 23:45:57.518 -07 000000433 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:45:57.518 -07 000000433 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 23:45:57.518 -07 000000433 INF: Y Motor: Moving 1342 steps-17 17-03-17 23:45:57.518 -07 000000459 INF: FPGA: Recv ZDACW 17-03-17 23:45:57.528 -07 000000561 INF: FPGA: 'ZDACW 38579' command took 0 ms to send, 0 ms to get response, and 26 ms overall 17-03-17 23:45:57.528 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:45:57.528 -07 000000475 INF: FPGA: Recv ZDACR 38579 17-03-17 23:45:57.538 -07 000000433 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 23:45:57.538 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:57.538 -07 000000561 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet)) 17-03-17 23:45:57.578 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 394 ms. 17-03-17 23:45:57.578 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms. 17-03-17 23:45:57.578 -07 000000480 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:45:57.578 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 395 ms. 17-03-17 23:45:57.578 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms. 17-03-17 23:45:57.578 -07 000000486 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:45:57.588 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:45:57.588 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:45:57.588 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms. 17-03-17 23:45:57.598 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 416 ms. 17-03-17 23:45:57.698 -07 000000475 INF: FPGA: Recv FOCMRRFOC 17-03-17 23:45:57.698 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall 17-03-17 23:45:57.908 -07 000000382 INF: FPGA: Recv YMVTILE 17-03-17 23:45:57.908 -07 000000433 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall 17-03-17 23:45:57.948 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:45:57.958 -07 000000576 INF: FPGA: Recv YRDPOS 131189 17-03-17 23:45:57.958 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall 17-03-17 23:45:57.958 -07 000000433 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:45:57.958 -07 000000433 INF: Y Motor: Position error before settling (table move) = -11 encoder counts (-0.005 mm) 17-03-17 23:45:57.958 -07 000000433 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.838 mm, average velocity = 2.112 mm/sec 17-03-17 23:45:58.908 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:45:58.908 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 78, FrontChillerTemperature: 3.979922, 17-03-17 23:45:58.908 -07 000000415 INF: FPGA: Recv YRDPOS 131189 17-03-17 23:45:58.918 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:58.918 -07 000000433 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:45:58.938 -07 000000433 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 23:45:58.938 -07 000000433 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm) 17-03-17 23:45:58.938 -07 000000433 INF: Y Motor: Moved to 64.0571 after 1442 ms (table move) 17-03-17 23:45:58.938 -07 000000627 INF: Z Motor: EndOfMoveAbsStepped: target = -0.176603 mm (DAC = 38579) 17-03-17 23:45:58.968 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:58.968 -07 000000438 INF: FPGA: Recv ZSGSRD 36778 17-03-17 23:45:58.978 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 30 ms overall 17-03-17 23:45:58.978 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:58.978 -07 000000433 INF: FPGA: Recv ZSGSRD 36785 17-03-17 23:45:58.988 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:58.988 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:58.988 -07 000000448 INF: FPGA: Recv ZSGSRD 36781 17-03-17 23:45:58.998 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:58.998 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:58.998 -07 000000623 INF: FPGA: Recv ZSGSRD 36789 17-03-17 23:45:59.008 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:59.008 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:59.008 -07 000000475 INF: FPGA: Recv ZSGSRD 36779 17-03-17 23:45:59.018 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:59.018 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:59.018 -07 000000480 INF: FPGA: Recv ZSGSRD 36777 17-03-17 23:45:59.028 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:59.028 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:59.028 -07 000000433 INF: FPGA: Recv ZSGSRD 36780 17-03-17 23:45:59.038 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:59.038 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:59.038 -07 000000382 INF: FPGA: Recv ZSGSRD 36776 17-03-17 23:45:59.048 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:59.048 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:59.048 -07 000000415 INF: FPGA: Recv ZSGSRD 36785 17-03-17 23:45:59.058 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:59.058 -07 000000627 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:59.058 -07 000000512 INF: FPGA: Recv ZSGSRD 36777 17-03-17 23:45:59.068 -07 000000627 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:59.068 -07 000000627 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:45:59.068 -07 000000480 INF: FPGA: Recv ZPIEZORD 32877 17-03-17 23:45:59.078 -07 000000627 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:59.078 -07 000000627 INF: Z Motor: Piezo is near 50.2 V (nominally 0 to 100 V), expect near 58.9 V, since DAC is at 5.887 V. Piezo Error = -8.6 V. 17-03-17 23:45:59.078 -07 000000627 INF: Z Motor: ReadAdcAverage: Commanded Z = -176.6 um, Read 10 ADC samples: Avg = 36781 (-175.7 uncal um), Error = 0.9 uncal um, Median = 36780 (-175.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36776 (-175.7 uncal um), Max = 36789 (-175.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-17 23:45:59.078 -07 000000627 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36781, posNoise = 8, negNoise = 5 17-03-17 23:45:59.078 -07 000000627 INF: Z Motor: After move to -0.176603, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:45:59.078 -07 000000627 INF: Z Motor: Settle wait time = 1445 ms, measure time = 132 ms (allowed 150 ms), total time = 1577 ms 17-03-17 23:45:59.078 -07 000000627 INF: Z Motor: Waiting extra 18 ms after reading position to reach expected total of 150 ms 17-03-17 23:45:59.098 -07 000000627 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1722 ms 17-03-17 23:45:59.098 -07 000000627 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 23:45:59.098 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:45:59.098 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:45:59.098 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:45:59.098 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:45:59.098 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 23:45:59.098 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:45:59.098 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:45:59.098 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 23:45:59.108 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-17 23:45:59.108 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 23:45:59.108 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms. 17-03-17 23:45:59.108 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms. 17-03-17 23:45:59.118 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:45:59.158 -07 000000623 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 23:45:59.458 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-17 23:45:59.458 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-17 23:45:59.458 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 23:45:59.458 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start. 17-03-17 23:45:59.498 -07 000000409 INF: FPGA: Recv @CAMSNAP 380 17-03-17 23:45:59.498 -07 000000459 INF: FPGA: Recv CAMSNAP 17-03-17 23:45:59.498 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 387 ms overall 17-03-17 23:45:59.578 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms. 17-03-17 23:45:59.578 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:45:59.578 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-17 23:45:59.578 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms. 17-03-17 23:45:59.598 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:45:59.598 -07 000000438 INF: Autofocus start 17-03-17 23:45:59.598 -07 000000438 INF: MeasureProfile start 17-03-17 23:45:59.598 -07 000000415 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:45:59.608 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 23:45:59.608 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 23:45:59.608 -07 000000438 INF: MeasureProfile done 17-03-17 23:45:59.608 -07 000000438 INF: X=-16 Z correction [um]=-0.1496812 17-03-17 23:45:59.608 -07 000000438 INF: Autofocus finished 17-03-17 23:45:59.808 -07 000000618 INF: FPGA: Recv FOCMRRIMG 17-03-17 23:45:59.808 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 23:45:59.808 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.176612298797245. ---------- 17-03-17 23:45:59.808 -07 000000610 INF: Cycle 78 Tile 6 Exposure Settings A 1037 G 500 T 500 C 1037 17-03-17 23:45:59.818 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 37059, sync = True, waitForSettling = True) 17-03-17 23:45:59.818 -07 000000610 INF: Z Motor: Moving to -0.169645 mm, started at -0.176612 mm, distance = 6.97 um 17-03-17 23:45:59.818 -07 000000610 INF: FPGA: Xmit ZDACW 37059\n [Z Motor] 17-03-17 23:45:59.818 -07 000000623 INF: FPGA: Recv ZDACW 17-03-17 23:45:59.828 -07 000000610 INF: FPGA: 'ZDACW 37059' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:59.828 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:45:59.828 -07 000000618 INF: FPGA: Recv ZDACR 37059 17-03-17 23:45:59.838 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:45:59.838 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:45:59.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:59.988 -07 000000382 INF: FPGA: Recv ZSGSRD 35702 17-03-17 23:45:59.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:45:59.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:45:59.998 -07 000000486 INF: FPGA: Recv ZSGSRD 35707 17-03-17 23:46:00.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:00.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:00.008 -07 000000415 INF: FPGA: Recv ZSGSRD 35695 17-03-17 23:46:00.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:00.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:00.018 -07 000000482 INF: FPGA: Recv ZSGSRD 35696 17-03-17 23:46:00.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:00.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:00.028 -07 000000512 INF: FPGA: Recv ZSGSRD 35698 17-03-17 23:46:00.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:00.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:00.038 -07 000000480 INF: FPGA: Recv ZSGSRD 35704 17-03-17 23:46:00.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:00.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:00.048 -07 000000623 INF: FPGA: Recv ZSGSRD 35703 17-03-17 23:46:00.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:46:00.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:00.058 -07 000000512 INF: FPGA: Recv ZSGSRD 35692 17-03-17 23:46:00.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:00.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:00.068 -07 000000547 INF: FPGA: Recv ZSGSRD 35695 17-03-17 23:46:00.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:00.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:00.078 -07 000000576 INF: FPGA: Recv ZSGSRD 35699 17-03-17 23:46:00.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:00.088 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:46:00.088 -07 000000459 INF: FPGA: Recv ZPIEZORD 31436 17-03-17 23:46:00.098 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:00.098 -07 000000610 INF: Z Motor: Piezo is near 47.2 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.655 V. Piezo Error = -9.4 V. 17-03-17 23:46:00.098 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.6 um, Read 10 ADC samples: Avg = 35699 (-168.8 uncal um), Error = 0.9 uncal um, Median = 35698 (-168.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 35692 (-168.7 uncal um), Max = 35707 (-168.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 7 (0.0 uncal um) 17-03-17 23:46:00.098 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35699, posNoise = 8, negNoise = 7 17-03-17 23:46:00.098 -07 000000610 INF: Z Motor: After move to -0.169645, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:46:00.098 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms) 17-03-17 23:46:00.098 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:46:00.098 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:46:00.098 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:46:00.098 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:46:00.098 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 23:46:00.098 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:46:00.098 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 23:46:00.098 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 23:46:00.098 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:46:00.098 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 23:46:00.098 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-17 23:46:00.098 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 23:46:00.098 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-17 23:46:00.098 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 23:46:00.108 -07 000000576 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms. 17-03-17 23:46:00.108 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 23:46:00.118 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms. 17-03-17 23:46:00.118 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms. 17-03-17 23:46:00.118 -07 000000576 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms. 17-03-17 23:46:00.118 -07 000000576 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms. 17-03-17 23:46:00.128 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 37236 150\n [Camera] 17-03-17 23:46:00.318 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 23:46:01.358 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229 17-03-17 23:46:01.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229 17-03-17 23:46:01.358 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:46:01.368 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229 17-03-17 23:46:01.368 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229 17-03-17 23:46:01.368 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:46:01.368 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:46:01.368 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start. 17-03-17 23:46:01.368 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:46:01.368 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start. 17-03-17 23:46:01.558 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37236 1422 17-03-17 23:46:01.698 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572 17-03-17 23:46:01.748 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 380 ms. 17-03-17 23:46:01.748 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 381 ms. 17-03-17 23:46:01.748 -07 000000512 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:46:01.758 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:46:01.758 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 391 ms. 17-03-17 23:46:01.758 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 392 ms. 17-03-17 23:46:01.758 -07 000000486 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:46:01.758 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms. 17-03-17 23:46:01.758 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:46:01.758 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 399 ms. 17-03-17 23:46:02.098 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:46:02.098 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 77. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1270, R2=1321, Total=2591. Warn if over 250 bubbles per interval. 17-03-17 23:46:02.208 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072 17-03-17 23:46:02.208 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072 17-03-17 23:46:02.208 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:46:02.208 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:46:02.208 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) start. 17-03-17 23:46:02.208 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072 17-03-17 23:46:02.208 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072 17-03-17 23:46:02.208 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:46:02.208 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:46:02.208 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start. 17-03-17 23:46:02.398 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 2265 17-03-17 23:46:02.398 -07 000000382 INF: FPGA: Recv CAMDBLSNAP 17-03-17 23:46:02.398 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 37236 150' command took 2 ms to send, 2262 ms to get response, and 2272 ms overall 17-03-17 23:46:02.398 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-17 23:46:02.398 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05712890625, Z-Position -0.169661301259859. ------ 17-03-17 23:46:02.398 -07 000000547 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.17576 mm 17-03-17 23:46:02.398 -07 000000547 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 23:46:02.398 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:46:02.408 -07 000000482 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True) 17-03-17 23:46:02.408 -07 000000541 INF: Z Motor: Entering MoveAbsStepped (DAC = 38394, sync = True, waitForSettling = False) 17-03-17 23:46:02.408 -07 000000482 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm 17-03-17 23:46:02.408 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:46:02.408 -07 000000541 INF: Z Motor: Moving to -0.175756 mm, started at -0.169661 mm, distance = -6.10 um 17-03-17 23:46:02.408 -07 000000512 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:46:02.408 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall 17-03-17 23:46:02.408 -07 000000623 INF: FPGA: Recv YRDPOS 131189 17-03-17 23:46:02.418 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:46:02.418 -07 000000482 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:46:02.418 -07 000000482 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 23:46:02.418 -07 000000482 INF: Y Motor: Moving 1337 steps-11 17-03-17 23:46:02.418 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 23:46:02.428 -07 000000541 INF: FPGA: Xmit ZDACW 38394\n [Z Motor] 17-03-17 23:46:02.428 -07 000000480 INF: FPGA: Recv ZDACW 17-03-17 23:46:02.438 -07 000000482 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 23:46:02.438 -07 000000541 INF: FPGA: 'ZDACW 38394' command took 0 ms to send, 0 ms to get response, and 28 ms overall 17-03-17 23:46:02.448 -07 000000541 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:46:02.448 -07 000000480 INF: FPGA: Recv ZDACR 38394 17-03-17 23:46:02.458 -07 000000541 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-17 23:46:02.458 -07 000000541 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet)) 17-03-17 23:46:02.608 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) end. Duration was 402 ms. 17-03-17 23:46:02.608 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms. 17-03-17 23:46:02.608 -07 000000409 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:46:02.608 -07 000000576 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 401 ms. 17-03-17 23:46:02.608 -07 000000576 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms. 17-03-17 23:46:02.608 -07 000000576 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:46:02.608 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:46:02.618 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms. 17-03-17 23:46:02.618 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms. 17-03-17 23:46:02.618 -07 000000438 INF: FPGA: Recv FOCMRRFOC 17-03-17 23:46:02.618 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 210 ms overall 17-03-17 23:46:02.618 -07 000000576 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms. 17-03-17 23:46:02.808 -07 000000433 INF: FPGA: Recv YMVTILE 17-03-17 23:46:02.808 -07 000000482 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall 17-03-17 23:46:02.848 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:46:02.858 -07 000000459 INF: FPGA: Recv YRDPOS 132872 17-03-17 23:46:02.858 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall 17-03-17 23:46:02.858 -07 000000482 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:46:02.858 -07 000000482 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm) 17-03-17 23:46:02.858 -07 000000482 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.835 mm, average velocity = 2.099 mm/sec 17-03-17 23:46:03.808 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:46:03.808 -07 000000480 INF: FPGA: Recv YRDPOS 132872 17-03-17 23:46:03.818 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:03.818 -07 000000482 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:46:03.838 -07 000000482 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 23:46:03.838 -07 000000482 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm) 17-03-17 23:46:03.838 -07 000000482 INF: Y Motor: Moved to 64.8789 after 1436 ms (table move) 17-03-17 23:46:03.848 -07 000000547 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175756 mm (DAC = 38394) 17-03-17 23:46:03.848 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:03.848 -07 000000382 INF: FPGA: Recv ZSGSRD 36646 17-03-17 23:46:03.858 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:03.858 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:03.858 -07 000000618 INF: FPGA: Recv ZSGSRD 36645 17-03-17 23:46:03.868 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:03.868 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:03.868 -07 000000486 INF: FPGA: Recv ZSGSRD 36651 17-03-17 23:46:03.878 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:03.878 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:03.878 -07 000000475 INF: FPGA: Recv ZSGSRD 36654 17-03-17 23:46:03.888 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:03.888 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:03.888 -07 000000512 INF: FPGA: Recv ZSGSRD 36656 17-03-17 23:46:03.898 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:03.898 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:03.898 -07 000000480 INF: FPGA: Recv ZSGSRD 36650 17-03-17 23:46:03.908 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:03.908 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:03.908 -07 000000433 INF: FPGA: Recv ZSGSRD 36646 17-03-17 23:46:03.918 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:03.918 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:03.918 -07 000000561 INF: FPGA: Recv ZSGSRD 36648 17-03-17 23:46:03.928 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:03.928 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:03.928 -07 000000459 INF: FPGA: Recv ZSGSRD 36643 17-03-17 23:46:03.938 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:03.938 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:03.938 -07 000000512 INF: FPGA: Recv ZSGSRD 36649 17-03-17 23:46:03.948 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:03.948 -07 000000547 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:46:03.948 -07 000000618 INF: FPGA: Recv ZPIEZORD 32712 17-03-17 23:46:03.958 -07 000000547 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:03.958 -07 000000547 INF: Z Motor: Piezo is near 49.9 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.859 V. Piezo Error = -8.7 V. 17-03-17 23:46:03.958 -07 000000547 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.8 um, Read 10 ADC samples: Avg = 36649 (-174.9 uncal um), Error = 0.9 uncal um, Median = 36648 (-174.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36643 (-174.8 uncal um), Max = 36656 (-174.9 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um) 17-03-17 23:46:03.958 -07 000000547 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36649, posNoise = 7, negNoise = 6 17-03-17 23:46:03.958 -07 000000547 INF: Z Motor: After move to -0.175756, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:46:03.958 -07 000000547 INF: Z Motor: Settle wait time = 1439 ms, measure time = 109 ms (allowed 150 ms), total time = 1548 ms 17-03-17 23:46:03.958 -07 000000547 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms 17-03-17 23:46:04.008 -07 000000547 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1601 ms 17-03-17 23:46:04.008 -07 000000547 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 23:46:04.008 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:46:04.008 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:46:04.008 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:46:04.008 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:46:04.008 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 23:46:04.008 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:46:04.008 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:46:04.008 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 23:46:04.018 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-17 23:46:04.018 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 23:46:04.018 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms. 17-03-17 23:46:04.018 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms. 17-03-17 23:46:04.028 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:46:04.068 -07 000000623 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 23:46:04.288 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 78, FrontChillerTemperature: 4.003063, 17-03-17 23:46:04.368 -07 000000382 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-17 23:46:04.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-17 23:46:04.368 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 23:46:04.368 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 615841328, 0x0, 559484976) start. 17-03-17 23:46:04.408 -07 000000459 INF: FPGA: Recv @CAMSNAP 380 17-03-17 23:46:04.408 -07 000000618 INF: FPGA: Recv CAMSNAP 17-03-17 23:46:04.408 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 385 ms overall 17-03-17 23:46:04.498 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 615841328, 0x0, 559484976) end. Duration was 126 ms. 17-03-17 23:46:04.498 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:46:04.498 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-17 23:46:04.498 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms. 17-03-17 23:46:04.508 -07 000000438 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:46:04.508 -07 000000480 INF: Autofocus start 17-03-17 23:46:04.508 -07 000000480 INF: MeasureProfile start 17-03-17 23:46:04.508 -07 000000486 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:46:04.518 -07 000000438 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-17 23:46:04.518 -07 000000438 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 23:46:04.518 -07 000000480 INF: MeasureProfile done 17-03-17 23:46:04.518 -07 000000480 INF: X=96 Z correction [um]=0.4193256 17-03-17 23:46:04.518 -07 000000480 INF: Autofocus finished 17-03-17 23:46:04.718 -07 000000541 INF: FPGA: Recv FOCMRRIMG 17-03-17 23:46:04.718 -07 000000438 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 23:46:04.718 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.175764302794532. ---------- 17-03-17 23:46:04.718 -07 000000610 INF: Cycle 78 Tile 7 Exposure Settings A 1037 G 500 T 500 C 1037 17-03-17 23:46:04.728 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36999, sync = True, waitForSettling = True) 17-03-17 23:46:04.728 -07 000000610 INF: Z Motor: Moving to -0.169371 mm, started at -0.175764 mm, distance = 6.39 um 17-03-17 23:46:04.728 -07 000000610 INF: FPGA: Xmit ZDACW 36999\n [Z Motor] 17-03-17 23:46:04.728 -07 000000618 INF: FPGA: Recv ZDACW 17-03-17 23:46:04.738 -07 000000610 INF: FPGA: 'ZDACW 36999' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:46:04.738 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:46:04.738 -07 000000512 INF: FPGA: Recv ZDACR 36999 17-03-17 23:46:04.748 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:04.748 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:46:04.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:04.898 -07 000000541 INF: FPGA: Recv ZSGSRD 35658 17-03-17 23:46:04.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:46:04.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:04.908 -07 000000459 INF: FPGA: Recv ZSGSRD 35653 17-03-17 23:46:04.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:04.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:04.918 -07 000000561 INF: FPGA: Recv ZSGSRD 35658 17-03-17 23:46:04.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:04.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:04.928 -07 000000576 INF: FPGA: Recv ZSGSRD 35655 17-03-17 23:46:04.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:04.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:04.938 -07 000000448 INF: FPGA: Recv ZSGSRD 35653 17-03-17 23:46:04.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:04.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:04.948 -07 000000541 INF: FPGA: Recv ZSGSRD 35656 17-03-17 23:46:04.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:04.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:04.958 -07 000000409 INF: FPGA: Recv ZSGSRD 35649 17-03-17 23:46:04.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:04.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:04.968 -07 000000547 INF: FPGA: Recv ZSGSRD 35661 17-03-17 23:46:04.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:04.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:04.978 -07 000000382 INF: FPGA: Recv ZSGSRD 35657 17-03-17 23:46:04.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:04.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:04.988 -07 000000480 INF: FPGA: Recv ZSGSRD 35651 17-03-17 23:46:04.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:04.998 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:46:04.998 -07 000000482 INF: FPGA: Recv ZPIEZORD 31373 17-03-17 23:46:05.008 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:05.008 -07 000000610 INF: Z Motor: Piezo is near 47.0 V (nominally 0 to 100 V), expect near 56.5 V, since DAC is at 5.646 V. Piezo Error = -9.4 V. 17-03-17 23:46:05.008 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.4 um, Read 10 ADC samples: Avg = 35655 (-168.5 uncal um), Error = 0.9 uncal um, Median = 35656 (-168.5 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35649 (-168.5 uncal um), Max = 35661 (-168.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um) 17-03-17 23:46:05.008 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35655, posNoise = 6, negNoise = 6 17-03-17 23:46:05.008 -07 000000610 INF: Z Motor: After move to -0.169371, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:46:05.008 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms) 17-03-17 23:46:05.008 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:46:05.008 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:46:05.008 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:46:05.008 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 23:46:05.008 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:46:05.008 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:46:05.008 -07 000000409 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 23:46:05.008 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 23:46:05.008 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:46:05.008 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 23:46:05.008 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-17 23:46:05.008 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 23:46:05.018 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms. 17-03-17 23:46:05.018 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 23:46:05.018 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-17 23:46:05.018 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 23:46:05.038 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 17 ms. 17-03-17 23:46:05.038 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 25 ms. 17-03-17 23:46:05.038 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 17 ms. 17-03-17 23:46:05.038 -07 000000409 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms. 17-03-17 23:46:05.038 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 37175 150\n [Camera] 17-03-17 23:46:05.238 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning red on 195 17-03-17 23:46:06.268 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229 17-03-17 23:46:06.268 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229 17-03-17 23:46:06.278 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:46:06.278 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:46:06.278 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start. 17-03-17 23:46:06.278 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229 17-03-17 23:46:06.278 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229 17-03-17 23:46:06.278 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:46:06.278 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:46:06.278 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start. 17-03-17 23:46:06.468 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37175 1422 17-03-17 23:46:06.618 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572 17-03-17 23:46:06.678 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 400 ms. 17-03-17 23:46:06.678 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms. 17-03-17 23:46:06.678 -07 000000480 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:46:06.678 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 399 ms. 17-03-17 23:46:06.678 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms. 17-03-17 23:46:06.678 -07 000000409 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:46:06.678 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:46:06.678 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms. 17-03-17 23:46:06.678 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:46:06.688 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms. 17-03-17 23:46:07.098 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:46:07.098 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 77. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1270, R2=1321, Total=2591. Warn if over 250 bubbles per interval. 17-03-17 23:46:07.118 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072 17-03-17 23:46:07.118 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072 17-03-17 23:46:07.118 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:46:07.118 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:46:07.118 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start. 17-03-17 23:46:07.118 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072 17-03-17 23:46:07.118 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072 17-03-17 23:46:07.118 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:46:07.118 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:46:07.118 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start. 17-03-17 23:46:07.308 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 2265 17-03-17 23:46:07.308 -07 000000438 INF: FPGA: Recv CAMDBLSNAP 17-03-17 23:46:07.308 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 37175 150' command took 2 ms to send, 2263 ms to get response, and 2272 ms overall 17-03-17 23:46:07.308 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-17 23:46:07.308 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87890625, Z-Position -0.169378635925622. ------ 17-03-17 23:46:07.308 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:46:07.308 -07 000000433 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.17594 mm 17-03-17 23:46:07.308 -07 000000433 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 23:46:07.318 -07 000000486 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:46:07.318 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 3 ms overall 17-03-17 23:46:07.318 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True) 17-03-17 23:46:07.438 -07 000000623 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm 17-03-17 23:46:07.438 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 23:46:07.438 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 38435, sync = True, waitForSettling = False) 17-03-17 23:46:07.438 -07 000000512 INF: Z Motor: Moving to -0.175944 mm, started at -0.169379 mm, distance = -6.57 um 17-03-17 23:46:07.448 -07 000000512 INF: FPGA: Xmit ZDACW 38435\n [Z Motor] 17-03-17 23:46:07.448 -07 000000459 INF: FPGA: Recv ZDACW 17-03-17 23:46:07.458 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:46:07.458 -07 000000512 INF: FPGA: 'ZDACW 38435' command took 0 ms to send, 0 ms to get response, and 16 ms overall 17-03-17 23:46:07.458 -07 000000618 INF: FPGA: Recv YRDPOS 132872 17-03-17 23:46:07.468 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall 17-03-17 23:46:07.468 -07 000000623 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:46:07.468 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:46:07.468 -07 000000623 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 23:46:07.468 -07 000000623 INF: Y Motor: Moving 1350 steps-28 17-03-17 23:46:07.468 -07 000000459 INF: FPGA: Recv ZDACR 38435 17-03-17 23:46:07.478 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-17 23:46:07.478 -07 000000512 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet)) 17-03-17 23:46:07.478 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 23:46:07.508 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 390 ms. 17-03-17 23:46:07.508 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms. 17-03-17 23:46:07.508 -07 000000480 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:46:07.508 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 396 ms. 17-03-17 23:46:07.508 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms. 17-03-17 23:46:07.508 -07 000000547 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:46:07.518 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:46:07.518 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms. 17-03-17 23:46:07.518 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms. 17-03-17 23:46:07.518 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms. 17-03-17 23:46:07.638 -07 000000618 INF: FPGA: Recv FOCMRRFOC 17-03-17 23:46:07.638 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 203 ms overall 17-03-17 23:46:07.848 -07 000000561 INF: FPGA: Recv YMVTILE 17-03-17 23:46:07.848 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall 17-03-17 23:46:07.888 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:46:07.898 -07 000000486 INF: FPGA: Recv YRDPOS 134582 17-03-17 23:46:07.898 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall 17-03-17 23:46:07.898 -07 000000623 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:46:07.898 -07 000000623 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm) 17-03-17 23:46:07.898 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.844 mm, average velocity = 2.180 mm/sec 17-03-17 23:46:08.848 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:46:08.848 -07 000000547 INF: FPGA: Recv YRDPOS 134582 17-03-17 23:46:08.858 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:08.858 -07 000000623 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:46:08.888 -07 000000623 INF: Y Motor: After move to 65.722610, error = -0.008743, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 23:46:08.888 -07 000000623 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm) 17-03-17 23:46:08.888 -07 000000623 INF: Y Motor: Moved to 65.7139 after 1448 ms (table move) 17-03-17 23:46:08.888 -07 000000433 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175944 mm (DAC = 38435) 17-03-17 23:46:08.888 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:08.888 -07 000000409 INF: FPGA: Recv ZSGSRD 36689 17-03-17 23:46:08.898 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 23:46:08.898 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:08.898 -07 000000541 INF: FPGA: Recv ZSGSRD 36673 17-03-17 23:46:08.908 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:08.908 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:08.908 -07 000000486 INF: FPGA: Recv ZSGSRD 36679 17-03-17 23:46:08.918 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:08.918 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:08.918 -07 000000482 INF: FPGA: Recv ZSGSRD 36684 17-03-17 23:46:08.928 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:08.928 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:08.928 -07 000000475 INF: FPGA: Recv ZSGSRD 36683 17-03-17 23:46:08.938 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:08.938 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:08.938 -07 000000459 INF: FPGA: Recv ZSGSRD 36680 17-03-17 23:46:08.948 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:08.948 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:08.948 -07 000000547 INF: FPGA: Recv ZSGSRD 36678 17-03-17 23:46:08.958 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:08.958 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:08.958 -07 000000623 INF: FPGA: Recv ZSGSRD 36675 17-03-17 23:46:08.968 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:08.968 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:08.968 -07 000000561 INF: FPGA: Recv ZSGSRD 36676 17-03-17 23:46:08.978 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:08.978 -07 000000433 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:08.978 -07 000000459 INF: FPGA: Recv ZSGSRD 36676 17-03-17 23:46:08.988 -07 000000433 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:08.988 -07 000000433 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:46:08.988 -07 000000475 INF: FPGA: Recv ZPIEZORD 32752 17-03-17 23:46:08.998 -07 000000433 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:08.998 -07 000000433 INF: Z Motor: Piezo is near 50.0 V (nominally 0 to 100 V), expect near 58.6 V, since DAC is at 5.865 V. Piezo Error = -8.7 V. 17-03-17 23:46:08.998 -07 000000433 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.9 um, Read 10 ADC samples: Avg = 36679 (-175.1 uncal um), Error = 0.9 uncal um, Median = 36678 (-175.1 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36673 (-175.0 uncal um), Max = 36689 (-175.1 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um) 17-03-17 23:46:08.998 -07 000000433 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36679, posNoise = 10, negNoise = 6 17-03-17 23:46:08.998 -07 000000433 INF: Z Motor: After move to -0.175944, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:46:08.998 -07 000000433 INF: Z Motor: Settle wait time = 1450 ms, measure time = 107 ms (allowed 150 ms), total time = 1557 ms 17-03-17 23:46:08.998 -07 000000433 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms 17-03-17 23:46:09.048 -07 000000433 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1730 ms 17-03-17 23:46:09.048 -07 000000433 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 23:46:09.048 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:46:09.048 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:46:09.048 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:46:09.048 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:46:09.048 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 23:46:09.048 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:46:09.058 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:46:09.058 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 23:46:09.058 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-17 23:46:09.058 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 23:46:09.068 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms. 17-03-17 23:46:09.068 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms. 17-03-17 23:46:09.068 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:46:09.108 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 23:46:09.408 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-17 23:46:09.408 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-17 23:46:09.408 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 23:46:09.418 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start. 17-03-17 23:46:09.448 -07 000000475 INF: FPGA: Recv @CAMSNAP 380 17-03-17 23:46:09.448 -07 000000459 INF: FPGA: Recv CAMSNAP 17-03-17 23:46:09.448 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall 17-03-17 23:46:09.528 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms. 17-03-17 23:46:09.528 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:46:09.528 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-17 23:46:09.528 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 116 ms. 17-03-17 23:46:09.548 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:46:09.548 -07 000000486 INF: Autofocus start 17-03-17 23:46:09.548 -07 000000486 INF: MeasureProfile start 17-03-17 23:46:09.548 -07 000000480 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:46:09.558 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 23:46:09.558 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 23:46:09.558 -07 000000486 INF: MeasureProfile done 17-03-17 23:46:09.558 -07 000000486 INF: X=-16 Z correction [um]=-0.1496812 17-03-17 23:46:09.558 -07 000000486 INF: Autofocus finished 17-03-17 23:46:09.658 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 78, FrontChillerTemperature: 4.015368, 17-03-17 23:46:09.758 -07 000000482 INF: FPGA: Recv FOCMRRIMG 17-03-17 23:46:09.758 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 23:46:09.758 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.7138671875, Z-position -0.175957029158785. ---------- 17-03-17 23:46:09.758 -07 000000610 INF: Cycle 78 Tile 8 Exposure Settings A 1037 G 500 T 500 C 1037 17-03-17 23:46:09.758 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36915, sync = True, waitForSettling = True) 17-03-17 23:46:09.768 -07 000000610 INF: Z Motor: Moving to -0.168986 mm, started at -0.175957 mm, distance = 6.97 um 17-03-17 23:46:09.768 -07 000000610 INF: FPGA: Xmit ZDACW 36915\n [Z Motor] 17-03-17 23:46:09.768 -07 000000576 INF: FPGA: Recv ZDACW 17-03-17 23:46:09.778 -07 000000610 INF: FPGA: 'ZDACW 36915' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:46:09.778 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:46:09.778 -07 000000618 INF: FPGA: Recv ZDACR 36915 17-03-17 23:46:09.788 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:09.788 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:46:09.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:09.938 -07 000000618 INF: FPGA: Recv ZSGSRD 35599 17-03-17 23:46:09.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:46:09.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:09.948 -07 000000438 INF: FPGA: Recv ZSGSRD 35598 17-03-17 23:46:09.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:09.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:09.958 -07 000000561 INF: FPGA: Recv ZSGSRD 35595 17-03-17 23:46:09.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:09.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:09.978 -07 000000475 INF: FPGA: Recv ZSGSRD 35596 17-03-17 23:46:09.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-17 23:46:09.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:09.988 -07 000000627 INF: FPGA: Recv ZSGSRD 35596 17-03-17 23:46:09.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:10.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:10.008 -07 000000475 INF: FPGA: Recv ZSGSRD 35598 17-03-17 23:46:10.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-17 23:46:10.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:10.038 -07 000000486 INF: FPGA: Recv ZSGSRD 35588 17-03-17 23:46:10.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-17 23:46:10.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:10.058 -07 000000541 INF: FPGA: Recv ZSGSRD 35599 17-03-17 23:46:10.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-17 23:46:10.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:10.068 -07 000000482 INF: FPGA: Recv ZSGSRD 35591 17-03-17 23:46:10.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:10.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:10.078 -07 000000448 INF: FPGA: Recv ZSGSRD 35595 17-03-17 23:46:10.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:10.088 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:46:10.088 -07 000000482 INF: FPGA: Recv ZPIEZORD 31270 17-03-17 23:46:10.098 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:10.098 -07 000000610 INF: Z Motor: Piezo is near 46.8 V (nominally 0 to 100 V), expect near 56.3 V, since DAC is at 5.633 V. Piezo Error = -9.5 V. 17-03-17 23:46:10.098 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -169.0 um, Read 10 ADC samples: Avg = 35596 (-168.1 uncal um), Error = 0.9 uncal um, Median = 35596 (-168.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35588 (-168.1 uncal um), Max = 35599 (-168.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um) 17-03-17 23:46:10.098 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35596, posNoise = 3, negNoise = 8 17-03-17 23:46:10.098 -07 000000610 INF: Z Motor: After move to -0.168986, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:46:10.098 -07 000000610 INF: Z Motor: MoveAbsStepped took 336 ms) 17-03-17 23:46:10.098 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:46:10.098 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:46:10.108 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:46:10.108 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 23:46:10.108 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:46:10.108 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:46:10.108 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 23:46:10.108 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 23:46:10.108 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-17 23:46:10.108 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 23:46:10.108 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 2 ms. 17-03-17 23:46:10.108 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 23:46:10.108 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-17 23:46:10.108 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 23:46:10.108 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms. 17-03-17 23:46:10.108 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 23:46:10.128 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms. 17-03-17 23:46:10.128 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 23 ms. 17-03-17 23:46:10.128 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms. 17-03-17 23:46:10.128 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 24 ms. 17-03-17 23:46:10.128 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 37092 150\n [Camera] 17-03-17 23:46:10.328 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 23:46:11.368 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229 17-03-17 23:46:11.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229 17-03-17 23:46:11.368 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:46:11.368 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229 17-03-17 23:46:11.368 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229 17-03-17 23:46:11.378 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:46:11.378 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:46:11.378 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start. 17-03-17 23:46:11.378 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:46:11.378 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start. 17-03-17 23:46:11.558 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37092 1422 17-03-17 23:46:11.708 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572 17-03-17 23:46:11.758 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 380 ms. 17-03-17 23:46:11.758 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 380 ms. 17-03-17 23:46:11.758 -07 000000482 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:46:11.758 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 387 ms. 17-03-17 23:46:11.768 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms. 17-03-17 23:46:11.768 -07 000000480 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:46:11.768 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:46:11.768 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:46:11.768 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms. 17-03-17 23:46:11.768 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 396 ms. 17-03-17 23:46:12.098 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:46:12.098 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 77. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1270, R2=1321, Total=2591. Warn if over 250 bubbles per interval. 17-03-17 23:46:12.208 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072 17-03-17 23:46:12.208 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072 17-03-17 23:46:12.218 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:46:12.218 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072 17-03-17 23:46:12.218 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072 17-03-17 23:46:12.218 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:46:12.218 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:46:12.218 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start. 17-03-17 23:46:12.228 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:46:12.228 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start. 17-03-17 23:46:12.408 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 2264 17-03-17 23:46:12.408 -07 000000459 INF: FPGA: Recv CAMDBLSNAP 17-03-17 23:46:12.408 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 37092 150' command took 2 ms to send, 2271 ms to get response, and 2274 ms overall 17-03-17 23:46:12.408 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-17 23:46:12.408 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.7138671875, Z-Position -0.168999607409258. ------ 17-03-17 23:46:12.408 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:46:12.408 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.17545 mm 17-03-17 23:46:12.408 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 23:46:12.408 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True) 17-03-17 23:46:12.408 -07 000000480 INF: Y Motor: Moving to 66.5526 mm, started at 65.7139 mm, delta = 0.8387 mm 17-03-17 23:46:12.408 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 38326, sync = True, waitForSettling = False) 17-03-17 23:46:12.408 -07 000000486 INF: Z Motor: Moving to -0.175445 mm, started at -0.169000 mm, distance = -6.45 um 17-03-17 23:46:12.408 -07 000000459 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:46:12.418 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-17 23:46:12.418 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:46:12.418 -07 000000438 INF: FPGA: Recv YRDPOS 134583 17-03-17 23:46:12.428 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 11 ms overall 17-03-17 23:46:12.428 -07 000000480 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:46:12.538 -07 000000486 INF: FPGA: Xmit ZDACW 38326\n [Z Motor] 17-03-17 23:46:12.538 -07 000000409 INF: FPGA: Recv ZDACW 17-03-17 23:46:12.548 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 23:46:12.548 -07 000000486 INF: FPGA: 'ZDACW 38326' command took 116 ms to send, 0 ms to get response, and 130 ms overall 17-03-17 23:46:12.548 -07 000000480 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 23:46:12.548 -07 000000480 INF: Y Motor: Moving 1341 steps-18 17-03-17 23:46:12.558 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 23:46:12.568 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:46:12.568 -07 000000627 INF: FPGA: Recv ZDACR 38326 17-03-17 23:46:12.578 -07 000000486 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-17 23:46:12.578 -07 000000486 INF: Z Motor: MoveAbsStepped took 161 ms (did NOT wait for settling yet)) 17-03-17 23:46:12.618 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 395 ms. 17-03-17 23:46:12.618 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms. 17-03-17 23:46:12.618 -07 000000475 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:46:12.618 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 393 ms. 17-03-17 23:46:12.618 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms. 17-03-17 23:46:12.618 -07 000000541 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:46:12.618 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:46:12.618 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms. 17-03-17 23:46:12.628 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:46:12.628 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms. 17-03-17 23:46:12.748 -07 000000486 INF: FPGA: Recv FOCMRRFOC 17-03-17 23:46:12.748 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 334 ms overall 17-03-17 23:46:12.928 -07 000000475 INF: FPGA: Recv YMVTILE 17-03-17 23:46:12.928 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 386 ms overall 17-03-17 23:46:12.978 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:46:12.978 -07 000000409 INF: FPGA: Recv YRDPOS 136272 17-03-17 23:46:12.988 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:12.988 -07 000000480 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:46:12.988 -07 000000480 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm) 17-03-17 23:46:12.988 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.839 mm, average velocity = 2.167 mm/sec 17-03-17 23:46:13.938 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:46:13.938 -07 000000541 INF: FPGA: Recv YRDPOS 136273 17-03-17 23:46:13.948 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:46:13.948 -07 000000480 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:46:13.968 -07 000000480 INF: Y Motor: After move to 66.552605, error = -0.013054, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 23:46:13.968 -07 000000480 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 1 counts (0.000 mm) 17-03-17 23:46:13.968 -07 000000480 INF: Y Motor: Moved to 66.5396 after 1559 ms (table move) 17-03-17 23:46:13.978 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175445 mm (DAC = 38326) 17-03-17 23:46:13.978 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:13.978 -07 000000475 INF: FPGA: Recv ZSGSRD 36598 17-03-17 23:46:13.988 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:46:13.988 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:13.988 -07 000000438 INF: FPGA: Recv ZSGSRD 36599 17-03-17 23:46:13.998 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:13.998 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:13.998 -07 000000438 INF: FPGA: Recv ZSGSRD 36609 17-03-17 23:46:14.008 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:14.008 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:14.008 -07 000000561 INF: FPGA: Recv ZSGSRD 36607 17-03-17 23:46:14.018 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:14.018 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:14.018 -07 000000561 INF: FPGA: Recv ZSGSRD 36603 17-03-17 23:46:14.028 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:14.028 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:14.028 -07 000000561 INF: FPGA: Recv ZSGSRD 36597 17-03-17 23:46:14.038 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:14.038 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:14.038 -07 000000561 INF: FPGA: Recv ZSGSRD 36605 17-03-17 23:46:14.048 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:14.048 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:14.048 -07 000000561 INF: FPGA: Recv ZSGSRD 36600 17-03-17 23:46:14.058 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:14.058 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:14.058 -07 000000409 INF: FPGA: Recv ZSGSRD 36598 17-03-17 23:46:14.068 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:14.068 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:14.068 -07 000000409 INF: FPGA: Recv ZSGSRD 36601 17-03-17 23:46:14.078 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:14.078 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:46:14.078 -07 000000561 INF: FPGA: Recv ZPIEZORD 32656 17-03-17 23:46:14.088 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:14.088 -07 000000576 INF: Z Motor: Piezo is near 49.8 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.848 V. Piezo Error = -8.7 V. 17-03-17 23:46:14.088 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.4 um, Read 10 ADC samples: Avg = 36602 (-174.6 uncal um), Error = 0.9 uncal um, Median = 36600 (-174.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36597 (-174.5 uncal um), Max = 36609 (-174.6 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-17 23:46:14.088 -07 000000576 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36602, posNoise = 7, negNoise = 5 17-03-17 23:46:14.088 -07 000000576 INF: Z Motor: After move to -0.175445, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:46:14.088 -07 000000576 INF: Z Motor: Settle wait time = 1562 ms, measure time = 109 ms (allowed 150 ms), total time = 1671 ms 17-03-17 23:46:14.088 -07 000000576 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms 17-03-17 23:46:14.138 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1723 ms 17-03-17 23:46:14.138 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 23:46:14.138 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:46:14.138 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:46:14.138 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:46:14.138 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:46:14.138 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 23:46:14.138 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:46:14.138 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:46:14.138 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 23:46:14.148 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-17 23:46:14.148 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 23:46:14.158 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms. 17-03-17 23:46:14.158 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms. 17-03-17 23:46:14.158 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:46:14.208 -07 000000475 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 23:46:14.508 -07 000000409 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-17 23:46:14.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-17 23:46:14.508 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 23:46:14.508 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start. 17-03-17 23:46:14.548 -07 000000561 INF: FPGA: Recv @CAMSNAP 380 17-03-17 23:46:14.548 -07 000000576 INF: FPGA: Recv CAMSNAP 17-03-17 23:46:14.548 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall 17-03-17 23:46:14.628 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 123 ms. 17-03-17 23:46:14.628 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:46:14.628 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-17 23:46:14.628 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 126 ms. 17-03-17 23:46:14.648 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:46:14.648 -07 000000459 INF: Autofocus start 17-03-17 23:46:14.648 -07 000000459 INF: MeasureProfile start 17-03-17 23:46:14.648 -07 000000480 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:46:14.658 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 23:46:14.658 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 23:46:14.658 -07 000000459 INF: MeasureProfile done 17-03-17 23:46:14.658 -07 000000459 INF: X=32 Z correction [um]=0.09220707 17-03-17 23:46:14.658 -07 000000459 INF: Autofocus finished 17-03-17 23:46:14.858 -07 000000486 INF: FPGA: Recv FOCMRRIMG 17-03-17 23:46:14.858 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 23:46:14.858 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.53955078125, Z-position -0.17546236482387. ---------- 17-03-17 23:46:14.858 -07 000000610 INF: Cycle 78 Tile 9 Exposure Settings A 1037 G 500 T 500 C 1037 17-03-17 23:46:14.868 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36859, sync = True, waitForSettling = True) 17-03-17 23:46:14.868 -07 000000610 INF: Z Motor: Moving to -0.168730 mm, started at -0.175462 mm, distance = 6.73 um 17-03-17 23:46:14.868 -07 000000610 INF: FPGA: Xmit ZDACW 36859\n [Z Motor] 17-03-17 23:46:14.868 -07 000000438 INF: FPGA: Recv ZDACW 17-03-17 23:46:14.878 -07 000000610 INF: FPGA: 'ZDACW 36859' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:46:14.878 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:46:14.878 -07 000000561 INF: FPGA: Recv ZDACR 36859 17-03-17 23:46:14.888 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:14.888 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:46:15.028 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 78, FrontChillerTemperature: 4.000345, 17-03-17 23:46:15.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:15.038 -07 000000480 INF: FPGA: Recv ZSGSRD 35555 17-03-17 23:46:15.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:15.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:15.048 -07 000000486 INF: FPGA: Recv ZSGSRD 35549 17-03-17 23:46:15.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:15.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:15.068 -07 000000475 INF: FPGA: Recv ZSGSRD 35557 17-03-17 23:46:15.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-17 23:46:15.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:15.098 -07 000000409 INF: FPGA: Recv ZSGSRD 35551 17-03-17 23:46:15.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-17 23:46:15.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:15.108 -07 000000438 INF: FPGA: Recv ZSGSRD 35563 17-03-17 23:46:15.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:15.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:15.128 -07 000000627 INF: FPGA: Recv ZSGSRD 35558 17-03-17 23:46:15.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-17 23:46:15.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:15.138 -07 000000459 INF: FPGA: Recv ZSGSRD 35555 17-03-17 23:46:15.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:15.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:15.148 -07 000000486 INF: FPGA: Recv ZSGSRD 35551 17-03-17 23:46:15.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:15.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:15.158 -07 000000459 INF: FPGA: Recv ZSGSRD 35558 17-03-17 23:46:15.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:15.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:15.168 -07 000000627 INF: FPGA: Recv ZSGSRD 35553 17-03-17 23:46:15.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:15.178 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:46:15.178 -07 000000459 INF: FPGA: Recv ZPIEZORD 31241 17-03-17 23:46:15.188 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:15.188 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.624 V. Piezo Error = -9.5 V. 17-03-17 23:46:15.188 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.7 um, Read 10 ADC samples: Avg = 35555 (-167.9 uncal um), Error = 0.9 uncal um, Median = 35555 (-167.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35549 (-167.8 uncal um), Max = 35563 (-167.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um) 17-03-17 23:46:15.188 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35555, posNoise = 8, negNoise = 6 17-03-17 23:46:15.188 -07 000000610 INF: Z Motor: After move to -0.168730, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:46:15.188 -07 000000610 INF: Z Motor: MoveAbsStepped took 320 ms) 17-03-17 23:46:15.188 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:46:15.188 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:46:15.188 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:46:15.188 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:46:15.188 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 23:46:15.188 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 23:46:15.188 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 23:46:15.188 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:46:15.188 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-17 23:46:15.188 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 23:46:15.188 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:46:15.188 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 23:46:15.198 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-17 23:46:15.198 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 23:46:15.198 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-17 23:46:15.198 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 23:46:15.208 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms. 17-03-17 23:46:15.208 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms. 17-03-17 23:46:15.208 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms. 17-03-17 23:46:15.208 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms. 17-03-17 23:46:15.208 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 37035 150\n [Camera] 17-03-17 23:46:15.408 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 23:46:16.448 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1230 17-03-17 23:46:16.448 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1230 17-03-17 23:46:16.448 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:46:16.458 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1230 17-03-17 23:46:16.458 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1230 17-03-17 23:46:16.458 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:46:16.458 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:46:16.458 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start. 17-03-17 23:46:16.458 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:46:16.458 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start. 17-03-17 23:46:16.638 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37035 1422 17-03-17 23:46:16.788 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572 17-03-17 23:46:16.858 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 396 ms. 17-03-17 23:46:16.858 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms. 17-03-17 23:46:16.858 -07 000000482 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:46:16.858 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 396 ms. 17-03-17 23:46:16.858 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms. 17-03-17 23:46:16.858 -07 000000627 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:46:16.858 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:46:16.858 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms. 17-03-17 23:46:16.858 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:46:16.868 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms. 17-03-17 23:46:17.098 -07 000000576 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:46:17.098 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 77. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1270, R2=1321, Total=2591. Warn if over 250 bubbles per interval. 17-03-17 23:46:17.288 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072 17-03-17 23:46:17.288 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072 17-03-17 23:46:17.298 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:46:17.298 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:46:17.298 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) start. 17-03-17 23:46:17.298 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072 17-03-17 23:46:17.298 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072 17-03-17 23:46:17.298 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:46:17.298 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:46:17.298 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) start. 17-03-17 23:46:17.488 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP 2265 17-03-17 23:46:17.488 -07 000000482 INF: FPGA: Recv CAMDBLSNAP 17-03-17 23:46:17.488 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 37035 150' command took 2 ms to send, 2261 ms to get response, and 2272 ms overall 17-03-17 23:46:17.488 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-17 23:46:17.488 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.53955078125, Z-Position -0.168736214711446. ------ 17-03-17 23:46:17.488 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:46:17.488 -07 000000482 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.17553 mm 17-03-17 23:46:17.488 -07 000000482 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 23:46:17.498 -07 000000459 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:46:17.498 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall 17-03-17 23:46:17.498 -07 000000627 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 23:46:17.498 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True) 17-03-17 23:46:17.498 -07 000000561 INF: Y Motor: Moving to 67.3826 mm, started at 66.5396 mm, delta = 0.8431 mm 17-03-17 23:46:17.498 -07 000000541 INF: Z Motor: Entering MoveAbsStepped (DAC = 38343, sync = True, waitForSettling = False) 17-03-17 23:46:17.498 -07 000000541 INF: Z Motor: Moving to -0.175523 mm, started at -0.168736 mm, distance = -6.79 um 17-03-17 23:46:17.508 -07 000000541 INF: FPGA: Xmit ZDACW 38343\n [Z Motor] 17-03-17 23:46:17.508 -07 000000409 INF: FPGA: Recv ZDACW 17-03-17 23:46:17.518 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:46:17.518 -07 000000541 INF: FPGA: 'ZDACW 38343' command took 0 ms to send, 0 ms to get response, and 17 ms overall 17-03-17 23:46:17.518 -07 000000448 INF: FPGA: Recv YRDPOS 136273 17-03-17 23:46:17.528 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 27 ms overall 17-03-17 23:46:17.528 -07 000000541 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:46:17.528 -07 000000561 INF: Y Motor: Encoder = 136273 = motor step 106463.3 = 66.5396 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:46:17.528 -07 000000561 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 23:46:17.528 -07 000000561 INF: Y Motor: Moving 1349 steps-28 17-03-17 23:46:17.528 -07 000000448 INF: FPGA: Recv ZDACR 38343 17-03-17 23:46:17.538 -07 000000541 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-17 23:46:17.538 -07 000000541 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet)) 17-03-17 23:46:17.538 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 23:46:17.698 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) end. Duration was 400 ms. 17-03-17 23:46:17.698 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms. 17-03-17 23:46:17.698 -07 000000576 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:46:17.698 -07 000000475 INF: FPGA: Recv FOCMRRFOC 17-03-17 23:46:17.698 -07 000000627 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 195 ms to get response, and 202 ms overall 17-03-17 23:46:17.698 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) end. Duration was 402 ms. 17-03-17 23:46:17.698 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms. 17-03-17 23:46:17.698 -07 000000438 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:46:17.708 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms. 17-03-17 23:46:17.708 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 10 ms. 17-03-17 23:46:17.708 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms. 17-03-17 23:46:17.708 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms. 17-03-17 23:46:17.918 -07 000000627 INF: FPGA: Recv YMVTILE 17-03-17 23:46:17.918 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 391 ms overall 17-03-17 23:46:17.958 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:46:17.958 -07 000000409 INF: FPGA: Recv YRDPOS 137978 17-03-17 23:46:17.968 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-17 23:46:17.968 -07 000000561 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:46:17.968 -07 000000561 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm) 17-03-17 23:46:17.968 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.843 mm, average velocity = 2.156 mm/sec 17-03-17 23:46:18.918 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:46:18.918 -07 000000459 INF: FPGA: Recv YRDPOS 137978 17-03-17 23:46:18.928 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:46:18.928 -07 000000561 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:46:18.948 -07 000000561 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 23:46:18.948 -07 000000561 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm) 17-03-17 23:46:18.948 -07 000000561 INF: Y Motor: Moved to 67.3721 after 1454 ms (table move) 17-03-17 23:46:18.958 -07 000000482 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175523 mm (DAC = 38343) 17-03-17 23:46:18.958 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:18.958 -07 000000576 INF: FPGA: Recv ZSGSRD 36612 17-03-17 23:46:18.968 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:18.968 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:18.968 -07 000000576 INF: FPGA: Recv ZSGSRD 36609 17-03-17 23:46:18.978 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:18.978 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:18.978 -07 000000475 INF: FPGA: Recv ZSGSRD 36607 17-03-17 23:46:18.988 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:18.988 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:18.988 -07 000000576 INF: FPGA: Recv ZSGSRD 36612 17-03-17 23:46:18.998 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:18.998 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:18.998 -07 000000576 INF: FPGA: Recv ZSGSRD 36611 17-03-17 23:46:19.008 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:19.008 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:19.008 -07 000000576 INF: FPGA: Recv ZSGSRD 36617 17-03-17 23:46:19.018 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:19.018 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:19.018 -07 000000627 INF: FPGA: Recv ZSGSRD 36616 17-03-17 23:46:19.028 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:19.028 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:19.028 -07 000000576 INF: FPGA: Recv ZSGSRD 36612 17-03-17 23:46:19.038 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:19.038 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:19.038 -07 000000576 INF: FPGA: Recv ZSGSRD 36611 17-03-17 23:46:19.048 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:19.048 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:19.048 -07 000000409 INF: FPGA: Recv ZSGSRD 36611 17-03-17 23:46:19.058 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:19.058 -07 000000482 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:46:19.058 -07 000000409 INF: FPGA: Recv ZPIEZORD 32671 17-03-17 23:46:19.068 -07 000000482 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:19.068 -07 000000482 INF: Z Motor: Piezo is near 49.8 V (nominally 0 to 100 V), expect near 58.5 V, since DAC is at 5.851 V. Piezo Error = -8.7 V. 17-03-17 23:46:19.068 -07 000000482 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.5 um, Read 10 ADC samples: Avg = 36612 (-174.6 uncal um), Error = 0.9 uncal um, Median = 36612 (-174.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 36607 (-174.6 uncal um), Max = 36617 (-174.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-17 23:46:19.068 -07 000000482 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36612, posNoise = 5, negNoise = 5 17-03-17 23:46:19.068 -07 000000482 INF: Z Motor: After move to -0.175523, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:46:19.068 -07 000000482 INF: Z Motor: Settle wait time = 1457 ms, measure time = 112 ms (allowed 150 ms), total time = 1569 ms 17-03-17 23:46:19.068 -07 000000482 INF: Z Motor: Waiting extra 38 ms after reading position to reach expected total of 150 ms 17-03-17 23:46:19.108 -07 000000482 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1611 ms 17-03-17 23:46:19.108 -07 000000482 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 23:46:19.108 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:46:19.108 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:46:19.108 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:46:19.108 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:46:19.108 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 23:46:19.108 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:46:19.108 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:46:19.108 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 23:46:19.108 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-17 23:46:19.118 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 23:46:19.128 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms. 17-03-17 23:46:19.128 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms. 17-03-17 23:46:19.128 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:46:19.178 -07 000000541 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 23:46:19.478 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-17 23:46:19.478 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-17 23:46:19.478 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 23:46:19.478 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 615841328, 0x0, 559484976) start. 17-03-17 23:46:19.518 -07 000000459 INF: FPGA: Recv @CAMSNAP 380 17-03-17 23:46:19.518 -07 000000482 INF: FPGA: Recv CAMSNAP 17-03-17 23:46:19.518 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall 17-03-17 23:46:19.608 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 615841328, 0x0, 559484976) end. Duration was 127 ms. 17-03-17 23:46:19.608 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:46:19.608 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-17 23:46:19.608 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms. 17-03-17 23:46:19.618 -07 000000486 INF: Autofocus start 17-03-17 23:46:19.618 -07 000000486 INF: MeasureProfile start 17-03-17 23:46:19.618 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:46:19.618 -07 000000627 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:46:19.628 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 23:46:19.628 -07 000000448 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 23:46:19.628 -07 000000486 INF: MeasureProfile done 17-03-17 23:46:19.628 -07 000000486 INF: X=0 Z correction [um]=-0.0713522 17-03-17 23:46:19.628 -07 000000486 INF: Autofocus finished 17-03-17 23:46:19.828 -07 000000541 INF: FPGA: Recv FOCMRRIMG 17-03-17 23:46:19.828 -07 000000448 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 23:46:19.828 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.175526606945287. ---------- 17-03-17 23:46:19.828 -07 000000610 INF: Cycle 78 Tile 10 Exposure Settings A 1037 G 500 T 500 C 1037 17-03-17 23:46:19.838 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36840, sync = True, waitForSettling = True) 17-03-17 23:46:19.838 -07 000000610 INF: Z Motor: Moving to -0.168643 mm, started at -0.175527 mm, distance = 6.88 um 17-03-17 23:46:19.838 -07 000000610 INF: FPGA: Xmit ZDACW 36840\n [Z Motor] 17-03-17 23:46:19.838 -07 000000475 INF: FPGA: Recv ZDACW 17-03-17 23:46:19.848 -07 000000610 INF: FPGA: 'ZDACW 36840' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:19.848 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:46:19.848 -07 000000541 INF: FPGA: Recv ZDACR 36840 17-03-17 23:46:19.858 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:19.858 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:46:20.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:20.008 -07 000000541 INF: FPGA: Recv ZSGSRD 35542 17-03-17 23:46:20.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:20.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:20.018 -07 000000541 INF: FPGA: Recv ZSGSRD 35539 17-03-17 23:46:20.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:20.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:20.028 -07 000000459 INF: FPGA: Recv ZSGSRD 35537 17-03-17 23:46:20.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:20.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:20.038 -07 000000459 INF: FPGA: Recv ZSGSRD 35551 17-03-17 23:46:20.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:20.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:20.048 -07 000000459 INF: FPGA: Recv ZSGSRD 35545 17-03-17 23:46:20.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:20.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:20.058 -07 000000576 INF: FPGA: Recv ZSGSRD 35541 17-03-17 23:46:20.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:20.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:20.068 -07 000000576 INF: FPGA: Recv ZSGSRD 35545 17-03-17 23:46:20.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:20.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:20.078 -07 000000409 INF: FPGA: Recv ZSGSRD 35542 17-03-17 23:46:20.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:20.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:20.088 -07 000000448 INF: FPGA: Recv ZSGSRD 35545 17-03-17 23:46:20.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:20.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:20.098 -07 000000448 INF: FPGA: Recv ZSGSRD 35539 17-03-17 23:46:20.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:20.108 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:46:20.108 -07 000000541 INF: FPGA: Recv ZPIEZORD 31238 17-03-17 23:46:20.118 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:20.118 -07 000000610 INF: Z Motor: Piezo is near 46.7 V (nominally 0 to 100 V), expect near 56.2 V, since DAC is at 5.621 V. Piezo Error = -9.5 V. 17-03-17 23:46:20.118 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -168.6 um, Read 10 ADC samples: Avg = 35543 (-167.8 uncal um), Error = 0.9 uncal um, Median = 35542 (-167.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 35537 (-167.7 uncal um), Max = 35551 (-167.8 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um) 17-03-17 23:46:20.118 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35543, posNoise = 8, negNoise = 6 17-03-17 23:46:20.118 -07 000000610 INF: Z Motor: After move to -0.168643, error = -0.000016, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:46:20.118 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms) 17-03-17 23:46:20.118 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:46:20.118 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:46:20.118 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:46:20.118 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 23:46:20.118 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 23:46:20.118 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:46:20.118 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 23:46:20.118 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:46:20.118 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms. 17-03-17 23:46:20.118 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 23:46:20.118 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:46:20.118 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 23:46:20.128 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms. 17-03-17 23:46:20.128 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-17 23:46:20.128 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 23:46:20.128 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 23:46:20.138 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 12 ms. 17-03-17 23:46:20.138 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms. 17-03-17 23:46:20.138 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms. 17-03-17 23:46:20.138 -07 000000482 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms. 17-03-17 23:46:20.138 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 37017 150\n [Camera] 17-03-17 23:46:20.348 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 23:46:20.448 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 78, FrontChillerTemperature: 4.014009, 17-03-17 23:46:21.378 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229 17-03-17 23:46:21.378 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229 17-03-17 23:46:21.388 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:46:21.388 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:46:21.388 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start. 17-03-17 23:46:21.388 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229 17-03-17 23:46:21.388 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229 17-03-17 23:46:21.388 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:46:21.388 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:46:21.388 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start. 17-03-17 23:46:21.578 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 37017 1422 17-03-17 23:46:21.728 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572 17-03-17 23:46:21.778 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 397 ms. 17-03-17 23:46:21.778 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms. 17-03-17 23:46:21.778 -07 000000475 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:46:21.788 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:46:21.788 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms. 17-03-17 23:46:21.788 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 401 ms. 17-03-17 23:46:21.788 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms. 17-03-17 23:46:21.788 -07 000000409 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:46:21.788 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:46:21.798 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms. 17-03-17 23:46:22.098 -07 000000486 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:46:22.098 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 77. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1270, R2=1321, Total=2591. Warn if over 250 bubbles per interval. 17-03-17 23:46:22.228 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072 17-03-17 23:46:22.228 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072 17-03-17 23:46:22.228 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072 17-03-17 23:46:22.228 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:46:22.228 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072 17-03-17 23:46:22.228 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:46:22.228 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start. 17-03-17 23:46:22.228 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:46:22.228 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:46:22.228 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start. 17-03-17 23:46:22.418 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 2265 17-03-17 23:46:22.418 -07 000000627 INF: FPGA: Recv CAMDBLSNAP 17-03-17 23:46:22.418 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 37017 150' command took 2 ms to send, 2263 ms to get response, and 2275 ms overall 17-03-17 23:46:22.418 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-17 23:46:22.418 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.3720703125, Z-Position -0.168659124165745. ------ 17-03-17 23:46:22.418 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:46:22.418 -07 000000482 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.17505 mm 17-03-17 23:46:22.418 -07 000000482 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 23:46:22.428 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 38240, sync = True, waitForSettling = False) 17-03-17 23:46:22.428 -07 000000486 INF: Z Motor: Moving to -0.175051 mm, started at -0.168659 mm, distance = -6.39 um 17-03-17 23:46:22.428 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True) 17-03-17 23:46:22.428 -07 000000459 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm 17-03-17 23:46:22.428 -07 000000409 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:46:22.428 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 2 ms to get response, and 4 ms overall 17-03-17 23:46:22.428 -07 000000486 INF: FPGA: Xmit ZDACW 38240\n [Z Motor] 17-03-17 23:46:22.428 -07 000000541 INF: FPGA: Recv ZDACW 17-03-17 23:46:22.438 -07 000000486 INF: FPGA: 'ZDACW 38240' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:46:22.438 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:46:22.438 -07 000000576 INF: FPGA: Recv ZDACR 38240 17-03-17 23:46:22.448 -07 000000486 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:22.448 -07 000000486 INF: Z Motor: MoveAbsStepped took 18 ms (did NOT wait for settling yet)) 17-03-17 23:46:22.448 -07 000000475 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 23:46:22.568 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:46:22.568 -07 000000409 INF: FPGA: Recv YRDPOS 137978 17-03-17 23:46:22.578 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 148 ms overall 17-03-17 23:46:22.578 -07 000000459 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:46:22.578 -07 000000459 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 23:46:22.578 -07 000000459 INF: Y Motor: Moving 1345 steps-22 17-03-17 23:46:22.578 -07 000000459 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 23:46:22.628 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 401 ms. 17-03-17 23:46:22.628 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms. 17-03-17 23:46:22.628 -07 000000561 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:46:22.638 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 405 ms. 17-03-17 23:46:22.638 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms. 17-03-17 23:46:22.638 -07 000000438 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:46:22.638 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:46:22.638 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms. 17-03-17 23:46:22.638 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms. 17-03-17 23:46:22.638 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms. 17-03-17 23:46:22.768 -07 000000409 INF: FPGA: Recv FOCMRRFOC 17-03-17 23:46:22.768 -07 000000475 INF: FPGA: 'FOCMRRFOC' command took 118 ms to send, 201 ms to get response, and 338 ms overall 17-03-17 23:46:22.948 -07 000000438 INF: FPGA: Recv YMVTILE 17-03-17 23:46:22.948 -07 000000459 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 369 ms to get response, and 378 ms overall 17-03-17 23:46:22.998 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:46:22.998 -07 000000623 INF: FPGA: Recv YRDPOS 139684 17-03-17 23:46:23.008 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:46:23.008 -07 000000459 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:46:23.008 -07 000000459 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm) 17-03-17 23:46:23.008 -07 000000459 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 379 ms, distance = 0.841 mm, average velocity = 2.218 mm/sec 17-03-17 23:46:23.958 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:46:23.958 -07 000000415 INF: FPGA: Recv YRDPOS 139684 17-03-17 23:46:23.968 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:46:23.968 -07 000000459 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:46:23.988 -07 000000459 INF: Y Motor: After move to 68.212608, error = -0.007530, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 23:46:23.988 -07 000000459 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm) 17-03-17 23:46:23.988 -07 000000459 INF: Y Motor: Moved to 68.2051 after 1563 ms (table move) 17-03-17 23:46:23.988 -07 000000482 INF: Z Motor: EndOfMoveAbsStepped: target = -0.175051 mm (DAC = 38240) 17-03-17 23:46:23.988 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:23.998 -07 000000409 INF: FPGA: Recv ZSGSRD 36550 17-03-17 23:46:23.998 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 3 ms overall 17-03-17 23:46:23.998 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:23.998 -07 000000502 INF: FPGA: Recv ZSGSRD 36539 17-03-17 23:46:24.008 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:46:24.008 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:24.008 -07 000000502 INF: FPGA: Recv ZSGSRD 36543 17-03-17 23:46:24.018 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:24.018 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:24.018 -07 000000415 INF: FPGA: Recv ZSGSRD 36537 17-03-17 23:46:24.028 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:24.028 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:24.028 -07 000000459 INF: FPGA: Recv ZSGSRD 36533 17-03-17 23:46:24.038 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:24.038 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:24.038 -07 000000623 INF: FPGA: Recv ZSGSRD 36536 17-03-17 23:46:24.048 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:24.048 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:24.048 -07 000000382 INF: FPGA: Recv ZSGSRD 36538 17-03-17 23:46:24.058 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:24.058 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:24.058 -07 000000541 INF: FPGA: Recv ZSGSRD 36535 17-03-17 23:46:24.068 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:24.068 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:24.068 -07 000000561 INF: FPGA: Recv ZSGSRD 36537 17-03-17 23:46:24.078 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:24.078 -07 000000482 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:24.078 -07 000000623 INF: FPGA: Recv ZSGSRD 36546 17-03-17 23:46:24.088 -07 000000482 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:24.088 -07 000000482 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:46:24.088 -07 000000561 INF: FPGA: Recv ZPIEZORD 32606 17-03-17 23:46:24.098 -07 000000482 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:24.098 -07 000000482 INF: Z Motor: Piezo is near 49.7 V (nominally 0 to 100 V), expect near 58.4 V, since DAC is at 5.835 V. Piezo Error = -8.7 V. 17-03-17 23:46:24.098 -07 000000482 INF: Z Motor: ReadAdcAverage: Commanded Z = -175.1 um, Read 10 ADC samples: Avg = 36539 (-174.2 uncal um), Error = 0.9 uncal um, Median = 36538 (-174.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 17 (0.1 uncal um), Min = 36533 (-174.1 uncal um), Max = 36550 (-174.2 uncal um), Pos Noise = 11 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um) 17-03-17 23:46:24.098 -07 000000482 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36539, posNoise = 11, negNoise = 6 17-03-17 23:46:24.098 -07 000000482 INF: Z Motor: After move to -0.175051, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:46:24.098 -07 000000482 INF: Z Motor: Settle wait time = 1566 ms, measure time = 103 ms (allowed 150 ms), total time = 1669 ms 17-03-17 23:46:24.098 -07 000000482 INF: Z Motor: Waiting extra 47 ms after reading position to reach expected total of 150 ms 17-03-17 23:46:24.148 -07 000000482 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1721 ms 17-03-17 23:46:24.148 -07 000000482 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 23:46:24.148 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:46:24.148 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:46:24.148 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:46:24.148 -07 000000409 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:46:24.148 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 23:46:24.148 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:46:24.148 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:46:24.148 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 23:46:24.158 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-17 23:46:24.158 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 23:46:24.168 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms. 17-03-17 23:46:24.168 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms. 17-03-17 23:46:24.168 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:46:24.218 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 23:46:24.518 -07 000000502 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-17 23:46:24.518 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-17 23:46:24.518 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 23:46:24.518 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start. 17-03-17 23:46:24.558 -07 000000512 INF: FPGA: Recv @CAMSNAP 380 17-03-17 23:46:24.558 -07 000000623 INF: FPGA: Recv CAMSNAP 17-03-17 23:46:24.558 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 385 ms overall 17-03-17 23:46:24.638 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 127 ms. 17-03-17 23:46:24.648 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:46:24.648 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-17 23:46:24.648 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms. 17-03-17 23:46:24.658 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:46:24.658 -07 000000448 INF: Autofocus start 17-03-17 23:46:24.658 -07 000000448 INF: MeasureProfile start 17-03-17 23:46:24.658 -07 000000459 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:46:24.668 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-17 23:46:24.668 -07 000000482 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 23:46:24.668 -07 000000448 INF: MeasureProfile done 17-03-17 23:46:24.668 -07 000000448 INF: X=-80 Z correction [um]=-0.4885566 17-03-17 23:46:24.668 -07 000000448 INF: Autofocus finished 17-03-17 23:46:24.868 -07 000000475 INF: FPGA: Recv FOCMRRIMG 17-03-17 23:46:24.868 -07 000000482 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 23:46:24.868 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.205078125, Z-position -0.175057639458939. ---------- 17-03-17 23:46:24.868 -07 000000610 INF: Cycle 78 Tile 11 Exposure Settings A 1037 G 500 T 500 C 1037 17-03-17 23:46:24.878 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36645, sync = True, waitForSettling = True) 17-03-17 23:46:24.878 -07 000000610 INF: Z Motor: Moving to -0.167750 mm, started at -0.175058 mm, distance = 7.31 um 17-03-17 23:46:24.878 -07 000000610 INF: FPGA: Xmit ZDACW 36645\n [Z Motor] 17-03-17 23:46:24.878 -07 000000438 INF: FPGA: Recv ZDACW 17-03-17 23:46:24.888 -07 000000610 INF: FPGA: 'ZDACW 36645' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:46:24.888 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:46:24.888 -07 000000438 INF: FPGA: Recv ZDACR 36645 17-03-17 23:46:24.898 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:24.898 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:46:25.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:25.048 -07 000000438 INF: FPGA: Recv ZSGSRD 35409 17-03-17 23:46:25.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:46:25.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:25.058 -07 000000438 INF: FPGA: Recv ZSGSRD 35399 17-03-17 23:46:25.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:25.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:25.068 -07 000000438 INF: FPGA: Recv ZSGSRD 35399 17-03-17 23:46:25.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:25.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:25.078 -07 000000438 INF: FPGA: Recv ZSGSRD 35397 17-03-17 23:46:25.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:25.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:25.088 -07 000000438 INF: FPGA: Recv ZSGSRD 35406 17-03-17 23:46:25.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:25.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:25.098 -07 000000438 INF: FPGA: Recv ZSGSRD 35405 17-03-17 23:46:25.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:25.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:25.108 -07 000000482 INF: FPGA: Recv ZSGSRD 35404 17-03-17 23:46:25.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:25.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:25.118 -07 000000482 INF: FPGA: Recv ZSGSRD 35404 17-03-17 23:46:25.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:25.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:25.128 -07 000000482 INF: FPGA: Recv ZSGSRD 35404 17-03-17 23:46:25.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:25.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:25.138 -07 000000502 INF: FPGA: Recv ZSGSRD 35403 17-03-17 23:46:25.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:25.148 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:46:25.148 -07 000000502 INF: FPGA: Recv ZPIEZORD 31039 17-03-17 23:46:25.158 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:25.158 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.9 V, since DAC is at 5.592 V. Piezo Error = -9.6 V. 17-03-17 23:46:25.158 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.8 um, Read 10 ADC samples: Avg = 35403 (-166.9 uncal um), Error = 0.9 uncal um, Median = 35404 (-166.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 35397 (-166.9 uncal um), Max = 35409 (-166.9 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um) 17-03-17 23:46:25.158 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35403, posNoise = 6, negNoise = 6 17-03-17 23:46:25.158 -07 000000610 INF: Z Motor: After move to -0.167750, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:46:25.158 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms) 17-03-17 23:46:25.158 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:46:25.158 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:46:25.158 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:46:25.158 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:46:25.158 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 23:46:25.158 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:46:25.158 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms. 17-03-17 23:46:25.158 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 23:46:25.158 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 23:46:25.158 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 23:46:25.158 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-17 23:46:25.158 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 23:46:25.168 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms. 17-03-17 23:46:25.168 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 23:46:25.168 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms. 17-03-17 23:46:25.168 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 23:46:25.178 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms. 17-03-17 23:46:25.178 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms. 17-03-17 23:46:25.178 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms. 17-03-17 23:46:25.178 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms. 17-03-17 23:46:25.178 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 36822 150\n [Camera] 17-03-17 23:46:25.378 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 23:46:25.818 -07 000000512 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 78, FrontChillerTemperature: 3.985358, 17-03-17 23:46:26.418 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229 17-03-17 23:46:26.418 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229 17-03-17 23:46:26.418 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:46:26.418 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229 17-03-17 23:46:26.418 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229 17-03-17 23:46:26.418 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:46:26.428 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:46:26.428 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start. 17-03-17 23:46:26.428 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:46:26.428 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start. 17-03-17 23:46:26.608 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36822 1422 17-03-17 23:46:26.758 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572 17-03-17 23:46:26.818 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 397 ms. 17-03-17 23:46:26.818 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms. 17-03-17 23:46:26.818 -07 000000409 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:46:26.828 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 397 ms. 17-03-17 23:46:26.828 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms. 17-03-17 23:46:26.828 -07 000000448 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:46:26.828 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms. 17-03-17 23:46:26.828 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms. 17-03-17 23:46:26.828 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:46:26.838 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms. 17-03-17 23:46:27.098 -07 000000502 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:46:27.098 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 77. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1270, R2=1321, Total=2591. Warn if over 250 bubbles per interval. 17-03-17 23:46:27.258 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072 17-03-17 23:46:27.258 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072 17-03-17 23:46:27.258 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:46:27.268 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072 17-03-17 23:46:27.268 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072 17-03-17 23:46:27.268 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:46:27.268 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:46:27.268 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start. 17-03-17 23:46:27.278 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:46:27.278 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start. 17-03-17 23:46:27.458 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP 2267 17-03-17 23:46:27.458 -07 000000482 INF: FPGA: Recv CAMDBLSNAP 17-03-17 23:46:27.458 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 36822 150' command took 2 ms to send, 2262 ms to get response, and 2274 ms overall 17-03-17 23:46:27.458 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-17 23:46:27.458 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.205078125, Z-Position -0.167759734465898. ------ 17-03-17 23:46:27.458 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:46:27.458 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.17426 mm 17-03-17 23:46:27.458 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 23:46:27.578 -07 000000512 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:46:27.578 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 116 ms overall 17-03-17 23:46:27.578 -07 000000623 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 23:46:27.578 -07 000000459 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True) 17-03-17 23:46:27.578 -07 000000459 INF: Y Motor: Moving to 69.0426 mm, started at 68.2051 mm, delta = 0.8375 mm 17-03-17 23:46:27.578 -07 000000448 INF: Z Motor: Entering MoveAbsStepped (DAC = 38068, sync = True, waitForSettling = False) 17-03-17 23:46:27.578 -07 000000448 INF: Z Motor: Moving to -0.174264 mm, started at -0.167760 mm, distance = -6.50 um 17-03-17 23:46:27.588 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:46:27.588 -07 000000512 INF: FPGA: Recv YRDPOS 139684 17-03-17 23:46:27.598 -07 000000448 INF: FPGA: Xmit ZDACW 38068\n [Z Motor] 17-03-17 23:46:27.598 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 15 ms overall 17-03-17 23:46:27.598 -07 000000459 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:46:27.598 -07 000000459 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 23:46:27.598 -07 000000459 INF: Y Motor: Moving 1340 steps-15 17-03-17 23:46:27.598 -07 000000547 INF: FPGA: Recv ZDACW 17-03-17 23:46:27.608 -07 000000448 INF: FPGA: 'ZDACW 38068' command took 0 ms to send, 0 ms to get response, and 25 ms overall 17-03-17 23:46:27.608 -07 000000459 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 23:46:27.618 -07 000000448 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:46:27.618 -07 000000433 INF: FPGA: Recv ZDACR 38068 17-03-17 23:46:27.628 -07 000000448 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-17 23:46:27.628 -07 000000448 INF: Z Motor: MoveAbsStepped took 45 ms (did NOT wait for settling yet)) 17-03-17 23:46:27.668 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 395 ms. 17-03-17 23:46:27.668 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms. 17-03-17 23:46:27.668 -07 000000409 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:46:27.668 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 392 ms. 17-03-17 23:46:27.668 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms. 17-03-17 23:46:27.668 -07 000000438 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:46:27.668 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:46:27.668 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms. 17-03-17 23:46:27.668 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:46:27.678 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms. 17-03-17 23:46:27.778 -07 000000482 INF: FPGA: Recv FOCMRRFOC 17-03-17 23:46:27.778 -07 000000623 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 202 ms overall 17-03-17 23:46:27.978 -07 000000382 INF: FPGA: Recv YMVTILE 17-03-17 23:46:27.978 -07 000000459 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall 17-03-17 23:46:28.028 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:46:28.028 -07 000000448 INF: FPGA: Recv YRDPOS 141367 17-03-17 23:46:28.038 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:46:28.038 -07 000000459 INF: Y Motor: Encoder = 141367 = motor step 110443.0 = 69.0269 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:46:28.038 -07 000000459 INF: Y Motor: Position error before settling (table move) = -32 encoder counts (-0.016 mm) 17-03-17 23:46:28.038 -07 000000459 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.838 mm, average velocity = 2.159 mm/sec 17-03-17 23:46:28.988 -07 000000459 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:46:28.988 -07 000000512 INF: FPGA: Recv YRDPOS 141368 17-03-17 23:46:28.998 -07 000000459 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:28.998 -07 000000459 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:46:29.018 -07 000000459 INF: Y Motor: After move to 69.042610, error = -0.015266, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 23:46:29.018 -07 000000459 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 1 counts (0.000 mm) 17-03-17 23:46:29.018 -07 000000459 INF: Y Motor: Moved to 69.0273 after 1441 ms (table move) 17-03-17 23:46:29.018 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.174264 mm (DAC = 38068) 17-03-17 23:46:29.018 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:29.028 -07 000000475 INF: FPGA: Recv ZSGSRD 36420 17-03-17 23:46:29.028 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall 17-03-17 23:46:29.028 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:29.028 -07 000000502 INF: FPGA: Recv ZSGSRD 36413 17-03-17 23:46:29.038 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:46:29.038 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:29.038 -07 000000459 INF: FPGA: Recv ZSGSRD 36414 17-03-17 23:46:29.048 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:29.048 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:29.048 -07 000000502 INF: FPGA: Recv ZSGSRD 36414 17-03-17 23:46:29.058 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:29.058 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:29.058 -07 000000459 INF: FPGA: Recv ZSGSRD 36421 17-03-17 23:46:29.068 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:29.068 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:29.068 -07 000000438 INF: FPGA: Recv ZSGSRD 36415 17-03-17 23:46:29.078 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:29.078 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:29.078 -07 000000502 INF: FPGA: Recv ZSGSRD 36417 17-03-17 23:46:29.088 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:29.088 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:29.088 -07 000000623 INF: FPGA: Recv ZSGSRD 36409 17-03-17 23:46:29.098 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:29.098 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:29.098 -07 000000438 INF: FPGA: Recv ZSGSRD 36417 17-03-17 23:46:29.108 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:29.108 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:29.108 -07 000000459 INF: FPGA: Recv ZSGSRD 36416 17-03-17 23:46:29.118 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:29.118 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:46:29.118 -07 000000433 INF: FPGA: Recv ZPIEZORD 32400 17-03-17 23:46:29.128 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:29.128 -07 000000561 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 58.1 V, since DAC is at 5.809 V. Piezo Error = -8.9 V. 17-03-17 23:46:29.128 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -174.3 um, Read 10 ADC samples: Avg = 36416 (-173.4 uncal um), Error = 0.9 uncal um, Median = 36416 (-173.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36409 (-173.3 uncal um), Max = 36421 (-173.4 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um) 17-03-17 23:46:29.128 -07 000000561 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36416, posNoise = 5, negNoise = 7 17-03-17 23:46:29.128 -07 000000561 INF: Z Motor: After move to -0.174264, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:46:29.128 -07 000000561 INF: Z Motor: Settle wait time = 1444 ms, measure time = 102 ms (allowed 150 ms), total time = 1546 ms 17-03-17 23:46:29.128 -07 000000561 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms 17-03-17 23:46:29.178 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1712 ms 17-03-17 23:46:29.178 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 23:46:29.178 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:46:29.178 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:46:29.178 -07 000000409 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:46:29.178 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 23:46:29.178 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:46:29.178 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:46:29.178 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-17 23:46:29.178 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 23:46:29.188 -07 000000433 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-17 23:46:29.188 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 23:46:29.198 -07 000000433 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms. 17-03-17 23:46:29.198 -07 000000433 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms. 17-03-17 23:46:29.198 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:46:29.248 -07 000000502 INF: FPGA: Recv @CAMSNAP turning led on 43 17-03-17 23:46:29.548 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 343 17-03-17 23:46:29.548 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 343 17-03-17 23:46:29.548 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 23:46:29.548 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start. 17-03-17 23:46:29.578 -07 000000382 INF: FPGA: Recv @CAMSNAP 380 17-03-17 23:46:29.578 -07 000000502 INF: FPGA: Recv CAMSNAP 17-03-17 23:46:29.578 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 385 ms overall 17-03-17 23:46:29.678 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms. 17-03-17 23:46:29.678 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:46:29.678 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-17 23:46:29.678 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms. 17-03-17 23:46:29.778 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:46:29.778 -07 000000433 INF: Autofocus start 17-03-17 23:46:29.778 -07 000000433 INF: MeasureProfile start 17-03-17 23:46:29.778 -07 000000547 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:46:29.788 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 23:46:29.788 -07 000000512 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 23:46:29.788 -07 000000433 INF: MeasureProfile done 17-03-17 23:46:29.788 -07 000000433 INF: X=32 Z correction [um]=0.09220707 17-03-17 23:46:29.788 -07 000000433 INF: Autofocus finished 17-03-17 23:46:29.988 -07 000000459 INF: FPGA: Recv FOCMRRIMG 17-03-17 23:46:29.988 -07 000000512 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 23:46:29.988 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02734375, Z-position -0.174267461365502. ---------- 17-03-17 23:46:29.988 -07 000000610 INF: Cycle 78 Tile 12 Exposure Settings A 1037 G 500 T 500 C 1037 17-03-17 23:46:29.998 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36600, sync = True, waitForSettling = True) 17-03-17 23:46:29.998 -07 000000610 INF: Z Motor: Moving to -0.167544 mm, started at -0.174267 mm, distance = 6.72 um 17-03-17 23:46:29.998 -07 000000610 INF: FPGA: Xmit ZDACW 36600\n [Z Motor] 17-03-17 23:46:29.998 -07 000000623 INF: FPGA: Recv ZDACW 17-03-17 23:46:30.008 -07 000000610 INF: FPGA: 'ZDACW 36600' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:30.008 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:46:30.008 -07 000000502 INF: FPGA: Recv ZDACR 36600 17-03-17 23:46:30.018 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:30.018 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:46:30.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:30.168 -07 000000438 INF: FPGA: Recv ZSGSRD 35373 17-03-17 23:46:30.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:46:30.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:30.178 -07 000000382 INF: FPGA: Recv ZSGSRD 35372 17-03-17 23:46:30.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:30.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:30.188 -07 000000623 INF: FPGA: Recv ZSGSRD 35372 17-03-17 23:46:30.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:30.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:30.198 -07 000000502 INF: FPGA: Recv ZSGSRD 35366 17-03-17 23:46:30.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:30.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:30.208 -07 000000480 INF: FPGA: Recv ZSGSRD 35369 17-03-17 23:46:30.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:30.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:30.218 -07 000000438 INF: FPGA: Recv ZSGSRD 35373 17-03-17 23:46:30.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:30.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:30.228 -07 000000561 INF: FPGA: Recv ZSGSRD 35372 17-03-17 23:46:30.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:30.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:30.238 -07 000000433 INF: FPGA: Recv ZSGSRD 35373 17-03-17 23:46:30.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:46:30.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:30.248 -07 000000438 INF: FPGA: Recv ZSGSRD 35373 17-03-17 23:46:30.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:30.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:30.258 -07 000000438 INF: FPGA: Recv ZSGSRD 35372 17-03-17 23:46:30.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:30.268 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:46:30.268 -07 000000438 INF: FPGA: Recv ZPIEZORD 31033 17-03-17 23:46:30.278 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:30.278 -07 000000610 INF: Z Motor: Piezo is near 46.3 V (nominally 0 to 100 V), expect near 55.8 V, since DAC is at 5.585 V. Piezo Error = -9.6 V. 17-03-17 23:46:30.278 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.5 um, Read 10 ADC samples: Avg = 35372 (-166.7 uncal um), Error = 0.9 uncal um, Median = 35372 (-166.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35366 (-166.7 uncal um), Max = 35373 (-166.7 uncal um), Pos Noise = 1 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um) 17-03-17 23:46:30.278 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35372, posNoise = 1, negNoise = 6 17-03-17 23:46:30.278 -07 000000610 INF: Z Motor: After move to -0.167544, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:46:30.278 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms) 17-03-17 23:46:30.278 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:46:30.278 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:46:30.278 -07 000000409 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:46:30.278 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:46:30.278 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 23:46:30.278 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:46:30.278 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 23:46:30.278 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 23:46:30.278 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:46:30.278 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 23:46:30.278 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-17 23:46:30.278 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 23:46:30.278 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-17 23:46:30.288 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 23:46:30.288 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-17 23:46:30.288 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 23:46:30.298 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms. 17-03-17 23:46:30.298 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms. 17-03-17 23:46:30.298 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms. 17-03-17 23:46:30.298 -07 000000433 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms. 17-03-17 23:46:30.298 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 36777 150\n [Camera] 17-03-17 23:46:30.498 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 23:46:31.188 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 78, FrontChillerTemperature: 4.001704, 17-03-17 23:46:31.538 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229 17-03-17 23:46:31.538 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229 17-03-17 23:46:31.538 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:46:31.548 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:46:31.548 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start. 17-03-17 23:46:31.548 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229 17-03-17 23:46:31.548 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229 17-03-17 23:46:31.548 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:46:31.548 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:46:31.548 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start. 17-03-17 23:46:31.728 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36777 1422 17-03-17 23:46:31.878 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572 17-03-17 23:46:31.938 -07 000000433 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 395 ms. 17-03-17 23:46:31.938 -07 000000433 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms. 17-03-17 23:46:31.938 -07 000000433 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:46:31.948 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:46:31.948 -07 000000433 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms. 17-03-17 23:46:31.948 -07 000000448 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 397 ms. 17-03-17 23:46:31.948 -07 000000448 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms. 17-03-17 23:46:31.948 -07 000000448 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:46:31.948 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:46:31.958 -07 000000448 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms. 17-03-17 23:46:32.098 -07 000000433 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:46:32.098 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 77. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1270, R2=1321, Total=2591. Warn if over 250 bubbles per interval. 17-03-17 23:46:32.378 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072 17-03-17 23:46:32.378 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072 17-03-17 23:46:32.388 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:46:32.388 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:46:32.388 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) start. 17-03-17 23:46:32.388 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072 17-03-17 23:46:32.388 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072 17-03-17 23:46:32.388 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:46:32.388 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:46:32.388 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start. 17-03-17 23:46:32.578 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP 2264 17-03-17 23:46:32.578 -07 000000547 INF: FPGA: Recv CAMDBLSNAP 17-03-17 23:46:32.578 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 36777 150' command took 2 ms to send, 2262 ms to get response, and 2273 ms overall 17-03-17 23:46:32.578 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-17 23:46:32.578 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02734375, Z-Position -0.167560583889504. ------ 17-03-17 23:46:32.578 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:46:32.578 -07 000000409 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.17395 mm 17-03-17 23:46:32.578 -07 000000409 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 23:46:32.588 -07 000000480 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True) 17-03-17 23:46:32.588 -07 000000512 INF: Z Motor: Entering MoveAbsStepped (DAC = 37998, sync = True, waitForSettling = False) 17-03-17 23:46:32.588 -07 000000512 INF: Z Motor: Moving to -0.173944 mm, started at -0.167561 mm, distance = -6.38 um 17-03-17 23:46:32.588 -07 000000512 INF: FPGA: Xmit ZDACW 37998\n [Z Motor] 17-03-17 23:46:32.588 -07 000000438 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:46:32.588 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-17 23:46:32.588 -07 000000480 INF: Y Motor: Moving to 69.8726 mm, started at 69.0273 mm, delta = 0.8453 mm 17-03-17 23:46:32.588 -07 000000438 INF: FPGA: Recv ZDACW 17-03-17 23:46:32.598 -07 000000512 INF: FPGA: 'ZDACW 37998' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:32.598 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:46:32.598 -07 000000448 INF: FPGA: Recv YRDPOS 141368 17-03-17 23:46:32.608 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 23:46:32.608 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall 17-03-17 23:46:32.608 -07 000000480 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:46:32.608 -07 000000480 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 23:46:32.608 -07 000000480 INF: Y Motor: Moving 1352 steps-32 17-03-17 23:46:32.618 -07 000000512 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:46:32.618 -07 000000547 INF: FPGA: Recv ZDACR 37998 17-03-17 23:46:32.628 -07 000000480 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 23:46:32.628 -07 000000512 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-17 23:46:32.628 -07 000000512 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet)) 17-03-17 23:46:32.788 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) end. Duration was 402 ms. 17-03-17 23:46:32.788 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms. 17-03-17 23:46:32.788 -07 000000561 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:46:32.788 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 400 ms. 17-03-17 23:46:32.788 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms. 17-03-17 23:46:32.788 -07 000000623 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:46:32.788 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:46:32.798 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms. 17-03-17 23:46:32.798 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms. 17-03-17 23:46:32.798 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms. 17-03-17 23:46:32.808 -07 000000627 INF: FPGA: Recv FOCMRRFOC 17-03-17 23:46:32.808 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall 17-03-17 23:46:32.998 -07 000000448 INF: FPGA: Recv YMVTILE 17-03-17 23:46:32.998 -07 000000480 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall 17-03-17 23:46:33.048 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:46:33.048 -07 000000618 INF: FPGA: Recv YRDPOS 143080 17-03-17 23:46:33.058 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:33.058 -07 000000480 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:46:33.058 -07 000000480 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm) 17-03-17 23:46:33.058 -07 000000480 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.129 mm/sec 17-03-17 23:46:34.008 -07 000000480 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:46:34.008 -07 000000415 INF: FPGA: Recv YRDPOS 143080 17-03-17 23:46:34.018 -07 000000480 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:46:34.018 -07 000000480 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:46:34.038 -07 000000480 INF: Y Motor: After move to 69.872612, error = -0.009331, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 23:46:34.038 -07 000000480 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm) 17-03-17 23:46:34.038 -07 000000480 INF: Y Motor: Moved to 69.8633 after 1456 ms (table move) 17-03-17 23:46:34.048 -07 000000409 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173944 mm (DAC = 37998) 17-03-17 23:46:34.048 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:34.048 -07 000000433 INF: FPGA: Recv ZSGSRD 36370 17-03-17 23:46:34.058 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:34.058 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:34.058 -07 000000561 INF: FPGA: Recv ZSGSRD 36359 17-03-17 23:46:34.068 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:34.068 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:34.068 -07 000000415 INF: FPGA: Recv ZSGSRD 36376 17-03-17 23:46:34.078 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:34.078 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:34.078 -07 000000433 INF: FPGA: Recv ZSGSRD 36372 17-03-17 23:46:34.088 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:34.088 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:34.088 -07 000000415 INF: FPGA: Recv ZSGSRD 36364 17-03-17 23:46:34.098 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:34.098 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:34.098 -07 000000448 INF: FPGA: Recv ZSGSRD 36377 17-03-17 23:46:34.108 -07 000000409 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:34.108 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:34.108 -07 000000502 INF: FPGA: Recv ZSGSRD 36365 17-03-17 23:46:34.118 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:34.118 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:34.118 -07 000000448 INF: FPGA: Recv ZSGSRD 36366 17-03-17 23:46:34.128 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:34.128 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:34.128 -07 000000438 INF: FPGA: Recv ZSGSRD 36359 17-03-17 23:46:34.138 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:34.138 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:34.138 -07 000000623 INF: FPGA: Recv ZSGSRD 36371 17-03-17 23:46:34.148 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:34.148 -07 000000409 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:46:34.148 -07 000000502 INF: FPGA: Recv ZPIEZORD 32407 17-03-17 23:46:34.158 -07 000000409 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:34.158 -07 000000409 INF: Z Motor: Piezo is near 49.2 V (nominally 0 to 100 V), expect near 58.0 V, since DAC is at 5.798 V. Piezo Error = -8.8 V. 17-03-17 23:46:34.158 -07 000000409 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.9 um, Read 10 ADC samples: Avg = 36368 (-173.1 uncal um), Error = 0.9 uncal um, Median = 36368 (-173.1 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36359 (-173.0 uncal um), Max = 36377 (-173.1 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 9 (0.1 uncal um) 17-03-17 23:46:34.158 -07 000000409 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36368, posNoise = 9, negNoise = 9 17-03-17 23:46:34.158 -07 000000409 INF: Z Motor: After move to -0.173944, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:46:34.158 -07 000000409 INF: Z Motor: Settle wait time = 1459 ms, measure time = 111 ms (allowed 150 ms), total time = 1570 ms 17-03-17 23:46:34.158 -07 000000409 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms 17-03-17 23:46:34.198 -07 000000409 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1612 ms 17-03-17 23:46:34.198 -07 000000409 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 23:46:34.198 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:46:34.198 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:46:34.198 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:46:34.198 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:46:34.198 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 23:46:34.198 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:46:34.198 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:46:34.198 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 23:46:34.208 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 4 ms. 17-03-17 23:46:34.208 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 23:46:34.218 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms. 17-03-17 23:46:34.218 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms. 17-03-17 23:46:34.218 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:46:34.268 -07 000000433 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 23:46:34.568 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-17 23:46:34.568 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-17 23:46:34.568 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 23:46:34.568 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 615841328, 0x0, 559484976) start. 17-03-17 23:46:34.608 -07 000000448 INF: FPGA: Recv @CAMSNAP 380 17-03-17 23:46:34.608 -07 000000618 INF: FPGA: Recv CAMSNAP 17-03-17 23:46:34.608 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 385 ms overall 17-03-17 23:46:34.698 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 615841328, 0x0, 559484976) end. Duration was 126 ms. 17-03-17 23:46:34.698 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:46:34.698 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-17 23:46:34.698 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms. 17-03-17 23:46:34.708 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:46:34.708 -07 000000438 INF: Autofocus start 17-03-17 23:46:34.708 -07 000000438 INF: MeasureProfile start 17-03-17 23:46:34.708 -07 000000623 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:46:34.718 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 23:46:34.718 -07 000000561 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 23:46:34.718 -07 000000438 INF: MeasureProfile done 17-03-17 23:46:34.718 -07 000000438 INF: X=16 Z correction [um]=0.01042744 17-03-17 23:46:34.718 -07 000000438 INF: Autofocus finished 17-03-17 23:46:34.918 -07 000000618 INF: FPGA: Recv FOCMRRIMG 17-03-17 23:46:34.918 -07 000000561 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 23:46:34.918 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86328125, Z-position -0.173959099182697. ---------- 17-03-17 23:46:34.918 -07 000000610 INF: Cycle 78 Tile 13 Exposure Settings A 1037 G 500 T 500 C 1037 17-03-17 23:46:34.918 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36513, sync = True, waitForSettling = True) 17-03-17 23:46:34.918 -07 000000610 INF: Z Motor: Moving to -0.167146 mm, started at -0.173959 mm, distance = 6.81 um 17-03-17 23:46:34.918 -07 000000610 INF: FPGA: Xmit ZDACW 36513\n [Z Motor] 17-03-17 23:46:34.928 -07 000000627 INF: FPGA: Recv ZDACW 17-03-17 23:46:34.938 -07 000000610 INF: FPGA: 'ZDACW 36513' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:46:34.938 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:46:34.938 -07 000000541 INF: FPGA: Recv ZDACR 36513 17-03-17 23:46:34.948 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:34.948 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:46:35.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:35.098 -07 000000433 INF: FPGA: Recv ZSGSRD 35311 17-03-17 23:46:35.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:46:35.108 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:35.108 -07 000000415 INF: FPGA: Recv ZSGSRD 35312 17-03-17 23:46:35.118 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:35.118 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:35.118 -07 000000502 INF: FPGA: Recv ZSGSRD 35307 17-03-17 23:46:35.128 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:35.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:35.128 -07 000000541 INF: FPGA: Recv ZSGSRD 35305 17-03-17 23:46:35.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:35.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:35.138 -07 000000480 INF: FPGA: Recv ZSGSRD 35309 17-03-17 23:46:35.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:35.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:35.148 -07 000000415 INF: FPGA: Recv ZSGSRD 35310 17-03-17 23:46:35.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:35.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:35.158 -07 000000627 INF: FPGA: Recv ZSGSRD 35307 17-03-17 23:46:35.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:35.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:35.168 -07 000000438 INF: FPGA: Recv ZSGSRD 35307 17-03-17 23:46:35.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:35.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:35.178 -07 000000480 INF: FPGA: Recv ZSGSRD 35305 17-03-17 23:46:35.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:35.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:35.188 -07 000000415 INF: FPGA: Recv ZSGSRD 35307 17-03-17 23:46:35.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:35.198 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:46:35.198 -07 000000561 INF: FPGA: Recv ZPIEZORD 30970 17-03-17 23:46:35.208 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:35.208 -07 000000610 INF: Z Motor: Piezo is near 46.2 V (nominally 0 to 100 V), expect near 55.7 V, since DAC is at 5.572 V. Piezo Error = -9.6 V. 17-03-17 23:46:35.208 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -167.1 um, Read 10 ADC samples: Avg = 35308 (-166.3 uncal um), Error = 0.9 uncal um, Median = 35307 (-166.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35305 (-166.3 uncal um), Max = 35312 (-166.3 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um) 17-03-17 23:46:35.208 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35308, posNoise = 4, negNoise = 3 17-03-17 23:46:35.208 -07 000000610 INF: Z Motor: After move to -0.167146, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:46:35.208 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms) 17-03-17 23:46:35.208 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:46:35.208 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:46:35.208 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:46:35.208 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:46:35.208 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 23:46:35.208 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:46:35.208 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 23:46:35.208 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 23:46:35.208 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms. 17-03-17 23:46:35.208 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 23:46:35.208 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-17 23:46:35.208 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 23:46:35.218 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms. 17-03-17 23:46:35.218 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 23:46:35.218 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-17 23:46:35.218 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 23:46:35.228 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms. 17-03-17 23:46:35.228 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 23 ms. 17-03-17 23:46:35.228 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms. 17-03-17 23:46:35.228 -07 000000547 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms. 17-03-17 23:46:35.238 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 36690 150\n [Camera] 17-03-17 23:46:35.438 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 23:46:36.468 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229 17-03-17 23:46:36.468 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229 17-03-17 23:46:36.468 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:46:36.468 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:46:36.468 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start. 17-03-17 23:46:36.478 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229 17-03-17 23:46:36.478 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229 17-03-17 23:46:36.478 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:46:36.478 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:46:36.478 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start. 17-03-17 23:46:36.558 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 78, FrontChillerTemperature: 3.978563, 17-03-17 23:46:36.668 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36690 1422 17-03-17 23:46:36.808 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572 17-03-17 23:46:36.868 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 398 ms. 17-03-17 23:46:36.868 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms. 17-03-17 23:46:36.868 -07 000000480 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:46:36.878 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 398 ms. 17-03-17 23:46:36.878 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms. 17-03-17 23:46:36.878 -07 000000541 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:46:36.878 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:46:36.878 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms. 17-03-17 23:46:36.878 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms. 17-03-17 23:46:36.888 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms. 17-03-17 23:46:37.098 -07 000000618 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:46:37.098 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 77. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1270, R2=1321, Total=2591. Warn if over 250 bubbles per interval. 17-03-17 23:46:37.318 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072 17-03-17 23:46:37.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072 17-03-17 23:46:37.318 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:46:37.318 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:46:37.318 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start. 17-03-17 23:46:37.318 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072 17-03-17 23:46:37.318 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072 17-03-17 23:46:37.318 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:46:37.318 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:46:37.318 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start. 17-03-17 23:46:37.508 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 2265 17-03-17 23:46:37.508 -07 000000623 INF: FPGA: Recv CAMDBLSNAP 17-03-17 23:46:37.508 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 36690 150' command took 2 ms to send, 2262 ms to get response, and 2272 ms overall 17-03-17 23:46:37.508 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-17 23:46:37.508 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86328125, Z-Position -0.167149434312431. ------ 17-03-17 23:46:37.508 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:46:37.508 -07 000000415 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.17359 mm 17-03-17 23:46:37.508 -07 000000415 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 23:46:37.628 -07 000000618 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:46:37.628 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 120 ms overall 17-03-17 23:46:37.628 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 23:46:37.628 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True) 17-03-17 23:46:37.628 -07 000000623 INF: Y Motor: Moving to 70.7026 mm, started at 69.8633 mm, delta = 0.8393 mm 17-03-17 23:46:37.628 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 37920, sync = True, waitForSettling = False) 17-03-17 23:46:37.628 -07 000000561 INF: Z Motor: Moving to -0.173587 mm, started at -0.167149 mm, distance = -6.44 um 17-03-17 23:46:37.638 -07 000000561 INF: FPGA: Xmit ZDACW 37920\n [Z Motor] 17-03-17 23:46:37.638 -07 000000541 INF: FPGA: Recv ZDACW 17-03-17 23:46:37.648 -07 000000561 INF: FPGA: 'ZDACW 37920' command took 0 ms to send, 0 ms to get response, and 11 ms overall 17-03-17 23:46:37.648 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:46:37.648 -07 000000541 INF: FPGA: Recv YRDPOS 143080 17-03-17 23:46:37.658 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:46:37.658 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall 17-03-17 23:46:37.658 -07 000000623 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:46:37.658 -07 000000623 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 23:46:37.658 -07 000000623 INF: Y Motor: Moving 1343 steps-19 17-03-17 23:46:37.658 -07 000000541 INF: FPGA: Recv ZDACR 37920 17-03-17 23:46:37.668 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-17 23:46:37.668 -07 000000561 INF: Z Motor: MoveAbsStepped took 31 ms (did NOT wait for settling yet)) 17-03-17 23:46:37.668 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 23:46:37.718 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 402 ms. 17-03-17 23:46:37.718 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 403 ms. 17-03-17 23:46:37.718 -07 000000502 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:46:37.718 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 401 ms. 17-03-17 23:46:37.718 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms. 17-03-17 23:46:37.718 -07 000000409 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:46:37.718 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:46:37.728 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms. 17-03-17 23:46:37.728 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms. 17-03-17 23:46:37.728 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms. 17-03-17 23:46:37.838 -07 000000618 INF: FPGA: Recv FOCMRRFOC 17-03-17 23:46:37.838 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 200 ms to get response, and 202 ms overall 17-03-17 23:46:38.048 -07 000000561 INF: FPGA: Recv YMVTILE 17-03-17 23:46:38.048 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 372 ms to get response, and 391 ms overall 17-03-17 23:46:38.088 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:46:38.088 -07 000000618 INF: FPGA: Recv YRDPOS 144770 17-03-17 23:46:38.098 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-17 23:46:38.098 -07 000000623 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:46:38.098 -07 000000623 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm) 17-03-17 23:46:38.098 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 391 ms, distance = 0.839 mm, average velocity = 2.147 mm/sec 17-03-17 23:46:39.048 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:46:39.048 -07 000000409 INF: FPGA: Recv YRDPOS 144770 17-03-17 23:46:39.058 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:46:39.058 -07 000000623 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:46:39.078 -07 000000623 INF: Y Motor: After move to 70.702606, error = -0.014130, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 23:46:39.078 -07 000000623 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm) 17-03-17 23:46:39.078 -07 000000623 INF: Y Motor: Moved to 70.6885 after 1447 ms (table move) 17-03-17 23:46:39.078 -07 000000415 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173587 mm (DAC = 37920) 17-03-17 23:46:39.078 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:39.088 -07 000000409 INF: FPGA: Recv ZSGSRD 36310 17-03-17 23:46:39.098 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:46:39.098 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:39.098 -07 000000486 INF: FPGA: Recv ZSGSRD 36317 17-03-17 23:46:39.108 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:39.108 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:39.108 -07 000000561 INF: FPGA: Recv ZSGSRD 36315 17-03-17 23:46:39.118 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:39.118 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:39.118 -07 000000480 INF: FPGA: Recv ZSGSRD 36315 17-03-17 23:46:39.128 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:39.128 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:39.128 -07 000000618 INF: FPGA: Recv ZSGSRD 36311 17-03-17 23:46:39.138 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:39.138 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:39.138 -07 000000486 INF: FPGA: Recv ZSGSRD 36307 17-03-17 23:46:39.148 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:39.148 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:39.148 -07 000000502 INF: FPGA: Recv ZSGSRD 36317 17-03-17 23:46:39.158 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:39.158 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:39.158 -07 000000486 INF: FPGA: Recv ZSGSRD 36307 17-03-17 23:46:39.168 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:39.168 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:39.168 -07 000000618 INF: FPGA: Recv ZSGSRD 36313 17-03-17 23:46:39.178 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:39.178 -07 000000415 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:39.178 -07 000000486 INF: FPGA: Recv ZSGSRD 36319 17-03-17 23:46:39.188 -07 000000415 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:39.188 -07 000000415 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:46:39.188 -07 000000502 INF: FPGA: Recv ZPIEZORD 32313 17-03-17 23:46:39.198 -07 000000415 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:39.198 -07 000000415 INF: Z Motor: Piezo is near 49.0 V (nominally 0 to 100 V), expect near 57.9 V, since DAC is at 5.786 V. Piezo Error = -8.8 V. 17-03-17 23:46:39.198 -07 000000415 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.6 um, Read 10 ADC samples: Avg = 36313 (-172.7 uncal um), Error = 0.9 uncal um, Median = 36314 (-172.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 36307 (-172.7 uncal um), Max = 36319 (-172.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um) 17-03-17 23:46:39.198 -07 000000415 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36313, posNoise = 6, negNoise = 6 17-03-17 23:46:39.198 -07 000000415 INF: Z Motor: After move to -0.173587, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:46:39.198 -07 000000415 INF: Z Motor: Settle wait time = 1450 ms, measure time = 111 ms (allowed 150 ms), total time = 1561 ms 17-03-17 23:46:39.198 -07 000000415 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms 17-03-17 23:46:39.238 -07 000000415 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1723 ms 17-03-17 23:46:39.238 -07 000000415 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 23:46:39.238 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:46:39.238 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:46:39.238 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:46:39.238 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:46:39.238 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 23:46:39.238 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:46:39.238 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-17 23:46:39.238 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 23:46:39.248 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-17 23:46:39.248 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 23:46:39.258 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms. 17-03-17 23:46:39.258 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms. 17-03-17 23:46:39.258 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:46:39.298 -07 000000486 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 23:46:39.598 -07 000000480 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-17 23:46:39.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-17 23:46:39.598 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 23:46:39.598 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start. 17-03-17 23:46:39.638 -07 000000623 INF: FPGA: Recv @CAMSNAP 380 17-03-17 23:46:39.638 -07 000000486 INF: FPGA: Recv CAMSNAP 17-03-17 23:46:39.638 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 385 ms overall 17-03-17 23:46:39.728 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 125 ms. 17-03-17 23:46:39.728 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:46:39.728 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-17 23:46:39.728 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms. 17-03-17 23:46:39.738 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:46:39.738 -07 000000415 INF: Autofocus start 17-03-17 23:46:39.738 -07 000000415 INF: MeasureProfile start 17-03-17 23:46:39.738 -07 000000480 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:46:39.748 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-17 23:46:39.748 -07 000000541 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 23:46:39.748 -07 000000415 INF: MeasureProfile done 17-03-17 23:46:39.748 -07 000000415 INF: X=16 Z correction [um]=0.01042744 17-03-17 23:46:39.748 -07 000000415 INF: Autofocus finished 17-03-17 23:46:39.948 -07 000000409 INF: FPGA: Recv FOCMRRIMG 17-03-17 23:46:39.948 -07 000000541 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 23:46:39.948 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6884765625, Z-position -0.173605767514901. ---------- 17-03-17 23:46:39.948 -07 000000610 INF: Cycle 78 Tile 14 Exposure Settings A 1037 G 500 T 500 C 1037 17-03-17 23:46:39.958 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36435, sync = True, waitForSettling = True) 17-03-17 23:46:39.958 -07 000000610 INF: Z Motor: Moving to -0.166789 mm, started at -0.173606 mm, distance = 6.82 um 17-03-17 23:46:39.958 -07 000000610 INF: FPGA: Xmit ZDACW 36435\n [Z Motor] 17-03-17 23:46:39.958 -07 000000486 INF: FPGA: Recv ZDACW 17-03-17 23:46:39.968 -07 000000610 INF: FPGA: 'ZDACW 36435' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:46:39.968 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:46:39.968 -07 000000623 INF: FPGA: Recv ZDACR 36435 17-03-17 23:46:39.978 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:39.978 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:46:40.128 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:40.128 -07 000000486 INF: FPGA: Recv ZSGSRD 35254 17-03-17 23:46:40.138 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:40.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:40.138 -07 000000623 INF: FPGA: Recv ZSGSRD 35260 17-03-17 23:46:40.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:40.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:40.148 -07 000000502 INF: FPGA: Recv ZSGSRD 35253 17-03-17 23:46:40.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:40.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:40.158 -07 000000561 INF: FPGA: Recv ZSGSRD 35249 17-03-17 23:46:40.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:40.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:40.168 -07 000000618 INF: FPGA: Recv ZSGSRD 35259 17-03-17 23:46:40.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:40.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:40.178 -07 000000486 INF: FPGA: Recv ZSGSRD 35253 17-03-17 23:46:40.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:40.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:40.188 -07 000000409 INF: FPGA: Recv ZSGSRD 35252 17-03-17 23:46:40.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:40.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:40.198 -07 000000415 INF: FPGA: Recv ZSGSRD 35256 17-03-17 23:46:40.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:40.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:40.208 -07 000000409 INF: FPGA: Recv ZSGSRD 35249 17-03-17 23:46:40.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:40.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:40.218 -07 000000415 INF: FPGA: Recv ZSGSRD 35255 17-03-17 23:46:40.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:40.228 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:46:40.228 -07 000000486 INF: FPGA: Recv ZPIEZORD 30903 17-03-17 23:46:40.238 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:40.238 -07 000000610 INF: Z Motor: Piezo is near 46.0 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.560 V. Piezo Error = -9.6 V. 17-03-17 23:46:40.238 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.8 um, Read 10 ADC samples: Avg = 35254 (-165.9 uncal um), Error = 0.9 uncal um, Median = 35254 (-165.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 35249 (-165.9 uncal um), Max = 35260 (-166.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-17 23:46:40.238 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35254, posNoise = 6, negNoise = 5 17-03-17 23:46:40.238 -07 000000610 INF: Z Motor: After move to -0.166789, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:46:40.238 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms) 17-03-17 23:46:40.238 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:46:40.238 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:46:40.238 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:46:40.238 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:46:40.238 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 23:46:40.238 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 23:46:40.238 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 23:46:40.238 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:46:40.238 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-17 23:46:40.238 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 23:46:40.238 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:46:40.238 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 23:46:40.248 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-17 23:46:40.248 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 23:46:40.248 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-17 23:46:40.248 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 23:46:40.258 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms. 17-03-17 23:46:40.258 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms. 17-03-17 23:46:40.258 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms. 17-03-17 23:46:40.258 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms. 17-03-17 23:46:40.258 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 36612 150\n [Camera] 17-03-17 23:46:40.458 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 23:46:41.498 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229 17-03-17 23:46:41.498 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229 17-03-17 23:46:41.498 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:46:41.498 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229 17-03-17 23:46:41.498 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229 17-03-17 23:46:41.508 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:46:41.508 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:46:41.508 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start. 17-03-17 23:46:41.508 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:46:41.508 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start. 17-03-17 23:46:41.688 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36612 1422 17-03-17 23:46:41.838 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572 17-03-17 23:46:41.898 -07 000000415 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 396 ms. 17-03-17 23:46:41.898 -07 000000415 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms. 17-03-17 23:46:41.898 -07 000000415 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:46:41.898 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 393 ms. 17-03-17 23:46:41.898 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms. 17-03-17 23:46:41.898 -07 000000409 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:46:41.908 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:46:41.908 -07 000000415 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms. 17-03-17 23:46:41.908 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:46:41.918 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms. 17-03-17 23:46:41.928 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 78, FrontChillerTemperature: 3.983999, 17-03-17 23:46:42.098 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:46:42.098 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 77. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1270, R2=1321, Total=2591. Warn if over 250 bubbles per interval. 17-03-17 23:46:42.338 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072 17-03-17 23:46:42.338 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072 17-03-17 23:46:42.348 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:46:42.348 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072 17-03-17 23:46:42.348 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072 17-03-17 23:46:42.348 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:46:42.348 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:46:42.348 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start. 17-03-17 23:46:42.358 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:46:42.358 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1094749800, 0x0, 418435064) start. 17-03-17 23:46:42.538 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 2265 17-03-17 23:46:42.538 -07 000000618 INF: FPGA: Recv CAMDBLSNAP 17-03-17 23:46:42.538 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 36612 150' command took 2 ms to send, 2261 ms to get response, and 2272 ms overall 17-03-17 23:46:42.538 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-17 23:46:42.538 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6884765625, Z-Position -0.166802526856776. ------ 17-03-17 23:46:42.658 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:46:42.658 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.17345 mm 17-03-17 23:46:42.658 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 23:46:42.658 -07 000000618 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:46:42.658 -07 000000409 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True) 17-03-17 23:46:42.658 -07 000000541 INF: Z Motor: Entering MoveAbsStepped (DAC = 37890, sync = True, waitForSettling = False) 17-03-17 23:46:42.658 -07 000000541 INF: Z Motor: Moving to -0.173449 mm, started at -0.166803 mm, distance = -6.65 um 17-03-17 23:46:42.658 -07 000000409 INF: Y Motor: Moving to 71.5326 mm, started at 70.6885 mm, delta = 0.8441 mm 17-03-17 23:46:42.668 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:46:42.668 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:46:42.668 -07 000000618 INF: FPGA: Recv YRDPOS 144770 17-03-17 23:46:42.678 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 13 ms overall 17-03-17 23:46:42.678 -07 000000409 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:46:42.678 -07 000000409 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 23:46:42.678 -07 000000409 INF: Y Motor: Moving 1351 steps-29 17-03-17 23:46:42.678 -07 000000541 INF: FPGA: Xmit ZDACW 37890\n [Z Motor] 17-03-17 23:46:42.678 -07 000000618 INF: FPGA: Recv ZDACW 17-03-17 23:46:42.688 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 23:46:42.688 -07 000000541 INF: FPGA: 'ZDACW 37890' command took 1 ms to send, 0 ms to get response, and 24 ms overall 17-03-17 23:46:42.698 -07 000000409 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 23:46:42.708 -07 000000541 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:46:42.708 -07 000000618 INF: FPGA: Recv ZDACR 37890 17-03-17 23:46:42.718 -07 000000541 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-17 23:46:42.718 -07 000000541 INF: Z Motor: MoveAbsStepped took 54 ms (did NOT wait for settling yet)) 17-03-17 23:46:42.748 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 394 ms. 17-03-17 23:46:42.748 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms. 17-03-17 23:46:42.748 -07 000000561 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:46:42.748 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:46:42.748 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms. 17-03-17 23:46:42.748 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1094749800, 0x0, 418435064) end. Duration was 391 ms. 17-03-17 23:46:42.748 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms. 17-03-17 23:46:42.748 -07 000000480 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:46:42.748 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:46:42.758 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms. 17-03-17 23:46:42.888 -07 000000480 INF: FPGA: Recv FOCMRRFOC 17-03-17 23:46:42.888 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall 17-03-17 23:46:43.068 -07 000000480 INF: FPGA: Recv YMVTILE 17-03-17 23:46:43.068 -07 000000409 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall 17-03-17 23:46:43.118 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:46:43.118 -07 000000480 INF: FPGA: Recv YRDPOS 146471 17-03-17 23:46:43.128 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:43.128 -07 000000409 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:46:43.128 -07 000000409 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm) 17-03-17 23:46:43.128 -07 000000409 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.844 mm, average velocity = 2.126 mm/sec 17-03-17 23:46:44.078 -07 000000409 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:46:44.078 -07 000000618 INF: FPGA: Recv YRDPOS 146471 17-03-17 23:46:44.088 -07 000000409 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:44.088 -07 000000409 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:46:44.108 -07 000000409 INF: Y Motor: After move to 71.532608, error = -0.013565, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 23:46:44.108 -07 000000409 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm) 17-03-17 23:46:44.108 -07 000000409 INF: Y Motor: Moved to 71.5190 after 1450 ms (table move) 17-03-17 23:46:44.108 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173449 mm (DAC = 37890) 17-03-17 23:46:44.108 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:44.118 -07 000000561 INF: FPGA: Recv ZSGSRD 36291 17-03-17 23:46:44.118 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall 17-03-17 23:46:44.118 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:44.118 -07 000000409 INF: FPGA: Recv ZSGSRD 36298 17-03-17 23:46:44.128 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:46:44.128 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:44.128 -07 000000561 INF: FPGA: Recv ZSGSRD 36282 17-03-17 23:46:44.138 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:44.138 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:44.138 -07 000000409 INF: FPGA: Recv ZSGSRD 36291 17-03-17 23:46:44.148 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:44.148 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:44.148 -07 000000541 INF: FPGA: Recv ZSGSRD 36286 17-03-17 23:46:44.158 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:44.158 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:44.158 -07 000000561 INF: FPGA: Recv ZSGSRD 36284 17-03-17 23:46:44.168 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:44.168 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:44.168 -07 000000618 INF: FPGA: Recv ZSGSRD 36291 17-03-17 23:46:44.178 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:44.178 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:44.178 -07 000000541 INF: FPGA: Recv ZSGSRD 36283 17-03-17 23:46:44.188 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:44.188 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:44.188 -07 000000576 INF: FPGA: Recv ZSGSRD 36292 17-03-17 23:46:44.198 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:44.198 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:44.198 -07 000000618 INF: FPGA: Recv ZSGSRD 36285 17-03-17 23:46:44.208 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:44.208 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:46:44.208 -07 000000576 INF: FPGA: Recv ZPIEZORD 32286 17-03-17 23:46:44.218 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:44.218 -07 000000502 INF: Z Motor: Piezo is near 49.0 V (nominally 0 to 100 V), expect near 57.8 V, since DAC is at 5.782 V. Piezo Error = -8.8 V. 17-03-17 23:46:44.218 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.4 um, Read 10 ADC samples: Avg = 36288 (-172.6 uncal um), Error = 0.9 uncal um, Median = 36288 (-172.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 36282 (-172.5 uncal um), Max = 36298 (-172.6 uncal um), Pos Noise = 10 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um) 17-03-17 23:46:44.218 -07 000000502 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36288, posNoise = 10, negNoise = 6 17-03-17 23:46:44.218 -07 000000502 INF: Z Motor: After move to -0.173449, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:46:44.218 -07 000000502 INF: Z Motor: Settle wait time = 1453 ms, measure time = 102 ms (allowed 150 ms), total time = 1555 ms 17-03-17 23:46:44.218 -07 000000502 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms 17-03-17 23:46:44.268 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms 17-03-17 23:46:44.268 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 23:46:44.268 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:46:44.268 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:46:44.268 -07 000000480 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:46:44.268 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 23:46:44.268 -07 000000409 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:46:44.268 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:46:44.268 -07 000000576 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:46:44.268 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 23:46:44.278 -07 000000576 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-17 23:46:44.278 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 23:46:44.288 -07 000000576 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms. 17-03-17 23:46:44.288 -07 000000576 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms. 17-03-17 23:46:44.288 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:46:44.338 -07 000000541 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 23:46:44.638 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-17 23:46:44.638 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-17 23:46:44.638 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 23:46:44.638 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start. 17-03-17 23:46:44.678 -07 000000618 INF: FPGA: Recv @CAMSNAP 380 17-03-17 23:46:44.678 -07 000000480 INF: FPGA: Recv CAMSNAP 17-03-17 23:46:44.678 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall 17-03-17 23:46:44.758 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 125 ms. 17-03-17 23:46:44.758 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:46:44.758 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-17 23:46:44.758 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms. 17-03-17 23:46:44.778 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:46:44.778 -07 000000576 INF: Autofocus start 17-03-17 23:46:44.778 -07 000000576 INF: MeasureProfile start 17-03-17 23:46:44.778 -07 000000409 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:46:44.788 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 23:46:44.788 -07 000000541 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 23:46:44.788 -07 000000576 INF: MeasureProfile done 17-03-17 23:46:44.788 -07 000000576 INF: X=16 Z correction [um]=0.01042744 17-03-17 23:46:44.788 -07 000000576 INF: Autofocus finished 17-03-17 23:46:44.988 -07 000000502 INF: FPGA: Recv FOCMRRIMG 17-03-17 23:46:44.988 -07 000000541 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 192 ms to get response, and 202 ms overall 17-03-17 23:46:44.988 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51904296875, Z-position -0.173445162211357. ---------- 17-03-17 23:46:44.988 -07 000000610 INF: Cycle 78 Tile 15 Exposure Settings A 1037 G 500 T 500 C 1037 17-03-17 23:46:44.998 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36405, sync = True, waitForSettling = True) 17-03-17 23:46:44.998 -07 000000610 INF: Z Motor: Moving to -0.166651 mm, started at -0.173445 mm, distance = 6.79 um 17-03-17 23:46:44.998 -07 000000610 INF: FPGA: Xmit ZDACW 36405\n [Z Motor] 17-03-17 23:46:44.998 -07 000000541 INF: FPGA: Recv ZDACW 17-03-17 23:46:45.008 -07 000000610 INF: FPGA: 'ZDACW 36405' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:45.008 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:46:45.008 -07 000000409 INF: FPGA: Recv ZDACR 36405 17-03-17 23:46:45.018 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:45.018 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:46:45.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:45.168 -07 000000576 INF: FPGA: Recv ZSGSRD 35234 17-03-17 23:46:45.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:46:45.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:45.178 -07 000000561 INF: FPGA: Recv ZSGSRD 35233 17-03-17 23:46:45.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:45.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:45.188 -07 000000576 INF: FPGA: Recv ZSGSRD 35226 17-03-17 23:46:45.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:45.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:45.198 -07 000000618 INF: FPGA: Recv ZSGSRD 35235 17-03-17 23:46:45.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:45.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:45.208 -07 000000576 INF: FPGA: Recv ZSGSRD 35227 17-03-17 23:46:45.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:45.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:45.218 -07 000000480 INF: FPGA: Recv ZSGSRD 35228 17-03-17 23:46:45.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:45.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:45.228 -07 000000502 INF: FPGA: Recv ZSGSRD 35227 17-03-17 23:46:45.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:45.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:45.238 -07 000000618 INF: FPGA: Recv ZSGSRD 35235 17-03-17 23:46:45.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:45.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:45.248 -07 000000561 INF: FPGA: Recv ZSGSRD 35228 17-03-17 23:46:45.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:45.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:45.258 -07 000000502 INF: FPGA: Recv ZSGSRD 35227 17-03-17 23:46:45.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:45.268 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:46:45.268 -07 000000618 INF: FPGA: Recv ZPIEZORD 30856 17-03-17 23:46:45.278 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:45.278 -07 000000610 INF: Z Motor: Piezo is near 45.9 V (nominally 0 to 100 V), expect near 55.6 V, since DAC is at 5.555 V. Piezo Error = -9.6 V. 17-03-17 23:46:45.278 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.7 um, Read 10 ADC samples: Avg = 35230 (-165.8 uncal um), Error = 0.9 uncal um, Median = 35228 (-165.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 35226 (-165.8 uncal um), Max = 35235 (-165.8 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um) 17-03-17 23:46:45.278 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35230, posNoise = 5, negNoise = 4 17-03-17 23:46:45.278 -07 000000610 INF: Z Motor: After move to -0.166651, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:46:45.278 -07 000000610 INF: Z Motor: MoveAbsStepped took 282 ms) 17-03-17 23:46:45.278 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:46:45.278 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:46:45.278 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:46:45.278 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:46:45.278 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 23:46:45.278 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:46:45.278 -07 000000409 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 23:46:45.278 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 23:46:45.278 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:46:45.278 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 23:46:45.278 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-17 23:46:45.278 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 23:46:45.288 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-17 23:46:45.288 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 23:46:45.288 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms. 17-03-17 23:46:45.288 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 23:46:45.298 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms. 17-03-17 23:46:45.298 -07 000000409 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms. 17-03-17 23:46:45.298 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms. 17-03-17 23:46:45.298 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms. 17-03-17 23:46:45.308 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 36582 150\n [Camera] 17-03-17 23:46:45.508 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 23:46:46.538 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229 17-03-17 23:46:46.538 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229 17-03-17 23:46:46.538 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:46:46.548 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229 17-03-17 23:46:46.548 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229 17-03-17 23:46:46.548 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:46:46.548 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:46:46.548 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start. 17-03-17 23:46:46.548 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:46:46.548 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start. 17-03-17 23:46:46.738 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36582 1422 17-03-17 23:46:46.878 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572 17-03-17 23:46:46.938 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 395 ms. 17-03-17 23:46:46.938 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms. 17-03-17 23:46:46.938 -07 000000576 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:46:46.948 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 395 ms. 17-03-17 23:46:46.948 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms. 17-03-17 23:46:46.948 -07 000000541 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:46:46.948 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:46:46.948 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms. 17-03-17 23:46:46.948 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:46:46.958 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms. 17-03-17 23:46:47.098 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:46:47.098 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 77. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1270, R2=1321, Total=2591. Warn if over 250 bubbles per interval. 17-03-17 23:46:47.298 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 78, FrontChillerTemperature: 4.003063, 17-03-17 23:46:47.388 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072 17-03-17 23:46:47.388 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072 17-03-17 23:46:47.388 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:46:47.388 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:46:47.388 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) start. 17-03-17 23:46:47.388 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072 17-03-17 23:46:47.388 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072 17-03-17 23:46:47.388 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:46:47.388 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:46:47.388 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) start. 17-03-17 23:46:47.578 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP 2264 17-03-17 23:46:47.578 -07 000000576 INF: FPGA: Recv CAMDBLSNAP 17-03-17 23:46:47.578 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 36582 150' command took 2 ms to send, 2262 ms to get response, and 2272 ms overall 17-03-17 23:46:47.578 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-17 23:46:47.578 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51904296875, Z-Position -0.166648345765373. ------ 17-03-17 23:46:47.578 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:46:47.578 -07 000000576 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.17306 mm 17-03-17 23:46:47.578 -07 000000576 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 23:46:47.588 -07 000000475 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True) 17-03-17 23:46:47.588 -07 000000475 INF: Y Motor: Moving to 72.3626 mm, started at 71.5190 mm, delta = 0.8436 mm 17-03-17 23:46:47.588 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:46:47.588 -07 000000541 INF: Z Motor: Entering MoveAbsStepped (DAC = 37805, sync = True, waitForSettling = False) 17-03-17 23:46:47.588 -07 000000541 INF: Z Motor: Moving to -0.173060 mm, started at -0.166648 mm, distance = -6.41 um 17-03-17 23:46:47.598 -07 000000541 INF: FPGA: Xmit ZDACW 37805\n [Z Motor] 17-03-17 23:46:47.778 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) end. Duration was 394 ms. 17-03-17 23:46:47.778 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms. 17-03-17 23:46:47.778 -07 000000382 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:46:47.788 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) end. Duration was 399 ms. 17-03-17 23:46:47.788 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms. 17-03-17 23:46:47.788 -07 000000482 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:46:47.788 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:46:47.788 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms. 17-03-17 23:46:47.788 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms. 17-03-17 23:46:47.788 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 405 ms. 17-03-17 23:46:47.798 -07 000000482 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:46:47.798 -07 000000482 INF: FPGA: Recv YRDPOS 146471 17-03-17 23:46:47.798 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 219 ms to get response, and 220 ms overall 17-03-17 23:46:47.798 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 209 ms to get response, and 218 ms overall 17-03-17 23:46:47.798 -07 000000482 INF: FPGA: Recv ZDACW 17-03-17 23:46:47.798 -07 000000541 INF: FPGA: 'ZDACW 37805' command took 0 ms to send, 199 ms to get response, and 218 ms overall 17-03-17 23:46:47.808 -07 000000475 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:46:47.808 -07 000000475 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 23:46:47.808 -07 000000475 INF: Y Motor: Moving 1350 steps-28 17-03-17 23:46:47.818 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 23:46:47.828 -07 000000541 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:46:47.828 -07 000000482 INF: FPGA: Recv ZDACR 37805 17-03-17 23:46:47.838 -07 000000475 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 23:46:47.838 -07 000000541 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 30 ms overall 17-03-17 23:46:47.838 -07 000000541 INF: Z Motor: MoveAbsStepped took 248 ms (did NOT wait for settling yet)) 17-03-17 23:46:48.018 -07 000000382 INF: FPGA: Recv FOCMRRFOC 17-03-17 23:46:48.018 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 210 ms overall 17-03-17 23:46:48.208 -07 000000541 INF: FPGA: Recv YMVTILE 17-03-17 23:46:48.208 -07 000000475 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 405 ms overall 17-03-17 23:46:48.268 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:46:48.268 -07 000000482 INF: FPGA: Recv YRDPOS 148172 17-03-17 23:46:48.278 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:46:48.278 -07 000000475 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:46:48.278 -07 000000475 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm) 17-03-17 23:46:48.278 -07 000000475 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 405 ms, distance = 0.844 mm, average velocity = 2.083 mm/sec 17-03-17 23:46:49.228 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:46:49.228 -07 000000482 INF: FPGA: Recv YRDPOS 148172 17-03-17 23:46:49.238 -07 000000475 INF: FPGA: 'YRDPOS' command took 3 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:46:49.238 -07 000000475 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:46:49.258 -07 000000475 INF: Y Motor: After move to 72.362610, error = -0.013000, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 23:46:49.258 -07 000000475 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm) 17-03-17 23:46:49.258 -07 000000475 INF: Y Motor: Moved to 72.3496 after 1675 ms (table move) 17-03-17 23:46:49.258 -07 000000576 INF: Z Motor: EndOfMoveAbsStepped: target = -0.173060 mm (DAC = 37805) 17-03-17 23:46:49.268 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:49.268 -07 000000541 INF: FPGA: Recv ZSGSRD 36232 17-03-17 23:46:49.278 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:46:49.278 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:49.278 -07 000000459 INF: FPGA: Recv ZSGSRD 36234 17-03-17 23:46:49.288 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:49.288 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:49.288 -07 000000482 INF: FPGA: Recv ZSGSRD 36233 17-03-17 23:46:49.298 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:49.298 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:49.298 -07 000000459 INF: FPGA: Recv ZSGSRD 36229 17-03-17 23:46:49.308 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:49.308 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:49.308 -07 000000482 INF: FPGA: Recv ZSGSRD 36231 17-03-17 23:46:49.318 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:49.318 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:49.318 -07 000000541 INF: FPGA: Recv ZSGSRD 36229 17-03-17 23:46:49.328 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:49.328 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:49.328 -07 000000482 INF: FPGA: Recv ZSGSRD 36230 17-03-17 23:46:49.338 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:49.338 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:49.338 -07 000000459 INF: FPGA: Recv ZSGSRD 36231 17-03-17 23:46:49.348 -07 000000576 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:49.348 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:49.348 -07 000000475 INF: FPGA: Recv ZSGSRD 36225 17-03-17 23:46:49.358 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:49.358 -07 000000576 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:49.358 -07 000000438 INF: FPGA: Recv ZSGSRD 36232 17-03-17 23:46:49.368 -07 000000576 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:49.368 -07 000000576 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:46:49.368 -07 000000482 INF: FPGA: Recv ZPIEZORD 32203 17-03-17 23:46:49.378 -07 000000576 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:49.378 -07 000000576 INF: Z Motor: Piezo is near 48.8 V (nominally 0 to 100 V), expect near 57.7 V, since DAC is at 5.769 V. Piezo Error = -8.9 V. 17-03-17 23:46:49.378 -07 000000576 INF: Z Motor: ReadAdcAverage: Commanded Z = -173.1 um, Read 10 ADC samples: Avg = 36231 (-172.2 uncal um), Error = 0.9 uncal um, Median = 36231 (-172.2 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 36225 (-172.2 uncal um), Max = 36234 (-172.2 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um) 17-03-17 23:46:49.378 -07 000000576 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36231, posNoise = 3, negNoise = 6 17-03-17 23:46:49.378 -07 000000576 INF: Z Motor: After move to -0.173060, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:46:49.378 -07 000000576 INF: Z Motor: Settle wait time = 1678 ms, measure time = 111 ms (allowed 150 ms), total time = 1789 ms 17-03-17 23:46:49.378 -07 000000576 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms 17-03-17 23:46:49.418 -07 000000576 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1831 ms 17-03-17 23:46:49.418 -07 000000576 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 23:46:49.418 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:46:49.418 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:46:49.418 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:46:49.418 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:46:49.418 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 23:46:49.418 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:46:49.418 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:46:49.418 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 23:46:49.418 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-17 23:46:49.418 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 23:46:49.428 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms. 17-03-17 23:46:49.428 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms. 17-03-17 23:46:49.438 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:46:49.478 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 23:46:49.778 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-17 23:46:49.778 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-17 23:46:49.778 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 23:46:49.788 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 615841328, 0x0, 559484976) start. 17-03-17 23:46:49.818 -07 000000475 INF: FPGA: Recv @CAMSNAP 380 17-03-17 23:46:49.818 -07 000000438 INF: FPGA: Recv CAMSNAP 17-03-17 23:46:49.818 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall 17-03-17 23:46:49.908 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 615841328, 0x0, 559484976) end. Duration was 126 ms. 17-03-17 23:46:49.908 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:46:49.908 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-17 23:46:49.908 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms. 17-03-17 23:46:50.018 -07 000000541 INF: Autofocus start 17-03-17 23:46:50.018 -07 000000541 INF: MeasureProfile start 17-03-17 23:46:50.018 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:46:50.018 -07 000000482 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:46:50.028 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 23:46:50.028 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 23:46:50.028 -07 000000541 INF: MeasureProfile done 17-03-17 23:46:50.028 -07 000000541 INF: X=16 Z correction [um]=0.01042744 17-03-17 23:46:50.028 -07 000000541 INF: Autofocus finished 17-03-17 23:46:50.228 -07 000000482 INF: FPGA: Recv FOCMRRIMG 17-03-17 23:46:50.228 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 202 ms overall 17-03-17 23:46:50.228 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.349609375, Z-position -0.173078982119276. ---------- 17-03-17 23:46:50.238 -07 000000610 INF: Cycle 78 Tile 16 Exposure Settings A 1037 G 500 T 500 C 1037 17-03-17 23:46:50.238 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36319, sync = True, waitForSettling = True) 17-03-17 23:46:50.238 -07 000000610 INF: Z Motor: Moving to -0.166258 mm, started at -0.173079 mm, distance = 6.82 um 17-03-17 23:46:50.238 -07 000000610 INF: FPGA: Xmit ZDACW 36319\n [Z Motor] 17-03-17 23:46:50.238 -07 000000482 INF: FPGA: Recv ZDACW 17-03-17 23:46:50.248 -07 000000610 INF: FPGA: 'ZDACW 36319' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:46:50.248 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:46:50.248 -07 000000541 INF: FPGA: Recv ZDACR 36319 17-03-17 23:46:50.258 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:50.258 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:46:50.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:50.408 -07 000000576 INF: FPGA: Recv ZSGSRD 35170 17-03-17 23:46:50.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:46:50.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:50.418 -07 000000459 INF: FPGA: Recv ZSGSRD 35174 17-03-17 23:46:50.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:50.428 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:50.428 -07 000000502 INF: FPGA: Recv ZSGSRD 35169 17-03-17 23:46:50.438 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:50.438 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:50.438 -07 000000482 INF: FPGA: Recv ZSGSRD 35172 17-03-17 23:46:50.448 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:46:50.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:50.448 -07 000000438 INF: FPGA: Recv ZSGSRD 35170 17-03-17 23:46:50.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:50.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:50.458 -07 000000502 INF: FPGA: Recv ZSGSRD 35172 17-03-17 23:46:50.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:50.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:50.468 -07 000000576 INF: FPGA: Recv ZSGSRD 35171 17-03-17 23:46:50.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:50.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:50.478 -07 000000382 INF: FPGA: Recv ZSGSRD 35171 17-03-17 23:46:50.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:50.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:50.488 -07 000000502 INF: FPGA: Recv ZSGSRD 35168 17-03-17 23:46:50.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:50.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:50.498 -07 000000438 INF: FPGA: Recv ZSGSRD 35174 17-03-17 23:46:50.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:50.508 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:46:50.508 -07 000000541 INF: FPGA: Recv ZPIEZORD 30760 17-03-17 23:46:50.518 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:50.518 -07 000000610 INF: Z Motor: Piezo is near 45.7 V (nominally 0 to 100 V), expect near 55.4 V, since DAC is at 5.542 V. Piezo Error = -9.7 V. 17-03-17 23:46:50.518 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.3 um, Read 10 ADC samples: Avg = 35171 (-165.4 uncal um), Error = 0.9 uncal um, Median = 35171 (-165.4 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 35168 (-165.4 uncal um), Max = 35174 (-165.4 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um) 17-03-17 23:46:50.518 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35171, posNoise = 3, negNoise = 3 17-03-17 23:46:50.518 -07 000000610 INF: Z Motor: After move to -0.166258, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:46:50.518 -07 000000610 INF: Z Motor: MoveAbsStepped took 278 ms) 17-03-17 23:46:50.518 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:46:50.518 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:46:50.518 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:46:50.518 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:46:50.518 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 23:46:50.518 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:46:50.518 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 23:46:50.518 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 23:46:50.518 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-17 23:46:50.518 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 23:46:50.518 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:46:50.518 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 23:46:50.528 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-17 23:46:50.528 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 23:46:50.528 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-17 23:46:50.528 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 23:46:50.538 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms. 17-03-17 23:46:50.538 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms. 17-03-17 23:46:50.538 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms. 17-03-17 23:46:50.538 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms. 17-03-17 23:46:50.548 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 36496 150\n [Camera] 17-03-17 23:46:50.748 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 23:46:51.778 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229 17-03-17 23:46:51.778 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229 17-03-17 23:46:51.778 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:46:51.778 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:46:51.778 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start. 17-03-17 23:46:51.788 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229 17-03-17 23:46:51.788 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229 17-03-17 23:46:51.788 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:46:51.788 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:46:51.788 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start. 17-03-17 23:46:51.978 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36496 1422 17-03-17 23:46:52.098 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:46:52.098 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 77. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1270, R2=1321, Total=2591. Warn if over 250 bubbles per interval. 17-03-17 23:46:52.128 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572 17-03-17 23:46:52.178 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 399 ms. 17-03-17 23:46:52.178 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms. 17-03-17 23:46:52.178 -07 000000459 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:46:52.188 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:46:52.188 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms. 17-03-17 23:46:52.188 -07 000000438 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 400 ms. 17-03-17 23:46:52.188 -07 000000438 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 401 ms. 17-03-17 23:46:52.188 -07 000000438 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:46:52.188 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:46:52.198 -07 000000438 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms. 17-03-17 23:46:52.628 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072 17-03-17 23:46:52.628 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072 17-03-17 23:46:52.628 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:46:52.628 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:46:52.628 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start. 17-03-17 23:46:52.628 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072 17-03-17 23:46:52.628 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072 17-03-17 23:46:52.628 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:46:52.628 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:46:52.628 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start. 17-03-17 23:46:52.778 -07 000000438 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 78, FrontChillerTemperature: 3.99219, 17-03-17 23:46:52.818 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP 2265 17-03-17 23:46:52.818 -07 000000576 INF: FPGA: Recv CAMDBLSNAP 17-03-17 23:46:52.818 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 36496 150' command took 2 ms to send, 2262 ms to get response, and 2272 ms overall 17-03-17 23:46:52.818 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-17 23:46:52.818 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.349609375, Z-Position -0.16626931724901. ------ 17-03-17 23:46:52.818 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:46:52.818 -07 000000438 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.17292 mm 17-03-17 23:46:52.818 -07 000000438 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 23:46:53.028 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 401 ms. 17-03-17 23:46:53.028 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms. 17-03-17 23:46:53.028 -07 000000382 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:46:53.028 -07 000000541 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 400 ms. 17-03-17 23:46:53.028 -07 000000541 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms. 17-03-17 23:46:53.028 -07 000000541 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:46:53.028 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:46:53.038 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms. 17-03-17 23:46:53.038 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms. 17-03-17 23:46:53.038 -07 000000541 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms. 17-03-17 23:46:53.048 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True) 17-03-17 23:46:53.048 -07 000000382 INF: Y Motor: Moving to 73.1926 mm, started at 72.3496 mm, delta = 0.8430 mm 17-03-17 23:46:53.048 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:46:53.048 -07 000000541 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:46:53.048 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 227 ms to get response, and 230 ms overall 17-03-17 23:46:53.048 -07 000000541 INF: FPGA: Recv YRDPOS 148173 17-03-17 23:46:53.048 -07 000000541 INF: Z Motor: Entering MoveAbsStepped (DAC = 37774, sync = True, waitForSettling = False) 17-03-17 23:46:53.048 -07 000000541 INF: Z Motor: Moving to -0.172918 mm, started at -0.166269 mm, distance = -6.65 um 17-03-17 23:46:53.058 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:46:53.058 -07 000000382 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:46:53.058 -07 000000541 INF: FPGA: Xmit ZDACW 37774\n [Z Motor] 17-03-17 23:46:53.058 -07 000000382 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 23:46:53.058 -07 000000382 INF: Y Motor: Moving 1348 steps-27 17-03-17 23:46:53.068 -07 000000576 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 23:46:53.078 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 23:46:53.988 -07 000000448 INF: FPGA: Recv ZDACW 17-03-17 23:46:53.988 -07 000000448 INF: FPGA: Recv FOCMRRFOC 17-03-17 23:46:53.988 -07 000000541 INF: FPGA: 'ZDACW 37774' command took 0 ms to send, 920 ms to get response, and 931 ms overall 17-03-17 23:46:53.988 -07 000000448 INF: FPGA: Recv YMVTILE 17-03-17 23:46:53.988 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 901 ms to get response, and 924 ms overall 17-03-17 23:46:53.988 -07 000000576 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 910 ms to get response, and 932 ms overall 17-03-17 23:46:54.008 -07 000000541 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:46:54.008 -07 000000486 INF: FPGA: Recv ZDACR 37774 17-03-17 23:46:54.018 -07 000000541 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 27 ms overall 17-03-17 23:46:54.018 -07 000000541 INF: Z Motor: MoveAbsStepped took 960 ms (did NOT wait for settling yet)) 17-03-17 23:46:54.038 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:46:54.038 -07 000000627 INF: FPGA: Recv YRDPOS 149865 17-03-17 23:46:54.048 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:54.048 -07 000000382 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:46:54.048 -07 000000382 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm) 17-03-17 23:46:54.048 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 924 ms, distance = 0.843 mm, average velocity = 0.912 mm/sec 17-03-17 23:46:54.998 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:46:54.998 -07 000000512 INF: FPGA: Recv YRDPOS 149865 17-03-17 23:46:55.008 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:46:55.008 -07 000000382 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:46:55.028 -07 000000382 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 23:46:55.028 -07 000000382 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm) 17-03-17 23:46:55.028 -07 000000382 INF: Y Motor: Moved to 73.1763 after 1983 ms (table move) 17-03-17 23:46:55.028 -07 000000438 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172918 mm (DAC = 37774) 17-03-17 23:46:55.028 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:55.038 -07 000000547 INF: FPGA: Recv ZSGSRD 36209 17-03-17 23:46:55.048 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:46:55.048 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:55.048 -07 000000486 INF: FPGA: Recv ZSGSRD 36211 17-03-17 23:46:55.058 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:55.058 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:55.058 -07 000000382 INF: FPGA: Recv ZSGSRD 36207 17-03-17 23:46:55.068 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:55.068 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:55.068 -07 000000382 INF: FPGA: Recv ZSGSRD 36206 17-03-17 23:46:55.078 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:55.078 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:55.078 -07 000000433 INF: FPGA: Recv ZSGSRD 36212 17-03-17 23:46:55.088 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:55.088 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:55.088 -07 000000382 INF: FPGA: Recv ZSGSRD 36208 17-03-17 23:46:55.098 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:55.098 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:55.098 -07 000000547 INF: FPGA: Recv ZSGSRD 36208 17-03-17 23:46:55.108 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:55.108 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:55.108 -07 000000433 INF: FPGA: Recv ZSGSRD 36208 17-03-17 23:46:55.118 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:55.118 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:55.118 -07 000000547 INF: FPGA: Recv ZSGSRD 36207 17-03-17 23:46:55.128 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:55.128 -07 000000438 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:55.128 -07 000000486 INF: FPGA: Recv ZSGSRD 36211 17-03-17 23:46:55.138 -07 000000438 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:55.138 -07 000000438 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:46:55.138 -07 000000541 INF: FPGA: Recv ZPIEZORD 32211 17-03-17 23:46:55.148 -07 000000438 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:55.148 -07 000000438 INF: Z Motor: Piezo is near 48.8 V (nominally 0 to 100 V), expect near 57.6 V, since DAC is at 5.764 V. Piezo Error = -8.8 V. 17-03-17 23:46:55.148 -07 000000438 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.9 um, Read 10 ADC samples: Avg = 36209 (-172.1 uncal um), Error = 0.9 uncal um, Median = 36208 (-172.0 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 36206 (-172.0 uncal um), Max = 36212 (-172.1 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um) 17-03-17 23:46:55.148 -07 000000438 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36209, posNoise = 3, negNoise = 3 17-03-17 23:46:55.148 -07 000000438 INF: Z Motor: After move to -0.172918, error = -0.000019, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:46:55.148 -07 000000438 INF: Z Motor: Settle wait time = 1980 ms, measure time = 111 ms (allowed 150 ms), total time = 2091 ms 17-03-17 23:46:55.148 -07 000000438 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms 17-03-17 23:46:55.188 -07 000000438 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2362 ms 17-03-17 23:46:55.188 -07 000000438 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 23:46:55.188 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:46:55.188 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:46:55.188 -07 000000541 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:46:55.188 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:46:55.188 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 23:46:55.188 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:46:55.188 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:46:55.188 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 23:46:55.198 -07 000000627 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-17 23:46:55.198 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 23:46:55.208 -07 000000627 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms. 17-03-17 23:46:55.208 -07 000000627 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms. 17-03-17 23:46:55.208 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:46:55.258 -07 000000512 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 23:46:55.548 -07 000000512 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-17 23:46:55.548 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-17 23:46:55.558 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 23:46:55.558 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start. 17-03-17 23:46:55.588 -07 000000576 INF: FPGA: Recv @CAMSNAP 380 17-03-17 23:46:55.588 -07 000000486 INF: FPGA: Recv CAMSNAP 17-03-17 23:46:55.588 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall 17-03-17 23:46:55.678 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 127 ms. 17-03-17 23:46:55.678 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:46:55.688 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-17 23:46:55.688 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms. 17-03-17 23:46:55.788 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:46:55.788 -07 000000433 INF: Autofocus start 17-03-17 23:46:55.788 -07 000000433 INF: MeasureProfile start 17-03-17 23:46:55.788 -07 000000438 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:46:55.798 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 23:46:55.798 -07 000000541 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 23:46:55.798 -07 000000433 INF: MeasureProfile done 17-03-17 23:46:55.798 -07 000000433 INF: X=0 Z correction [um]=-0.0713522 17-03-17 23:46:55.798 -07 000000433 INF: Autofocus finished 17-03-17 23:46:55.998 -07 000000627 INF: FPGA: Recv FOCMRRIMG 17-03-17 23:46:55.998 -07 000000541 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 23:46:55.998 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.172937649452157. ---------- 17-03-17 23:46:55.998 -07 000000610 INF: Cycle 78 Tile 17 Exposure Settings A 1037 G 500 T 500 C 1037 17-03-17 23:46:56.008 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36271, sync = True, waitForSettling = True) 17-03-17 23:46:56.008 -07 000000610 INF: Z Motor: Moving to -0.166038 mm, started at -0.172938 mm, distance = 6.90 um 17-03-17 23:46:56.008 -07 000000610 INF: FPGA: Xmit ZDACW 36271\n [Z Motor] 17-03-17 23:46:56.008 -07 000000433 INF: FPGA: Recv ZDACW 17-03-17 23:46:56.018 -07 000000610 INF: FPGA: 'ZDACW 36271' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:46:56.018 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:46:56.018 -07 000000433 INF: FPGA: Recv ZDACR 36271 17-03-17 23:46:56.028 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:56.028 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:46:56.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:56.178 -07 000000433 INF: FPGA: Recv ZSGSRD 35132 17-03-17 23:46:56.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:46:56.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:56.188 -07 000000433 INF: FPGA: Recv ZSGSRD 35139 17-03-17 23:46:56.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:56.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:56.198 -07 000000512 INF: FPGA: Recv ZSGSRD 35139 17-03-17 23:46:56.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:56.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:56.208 -07 000000433 INF: FPGA: Recv ZSGSRD 35136 17-03-17 23:46:56.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:56.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:56.218 -07 000000512 INF: FPGA: Recv ZSGSRD 35135 17-03-17 23:46:56.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:56.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:56.228 -07 000000433 INF: FPGA: Recv ZSGSRD 35138 17-03-17 23:46:56.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:56.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:56.238 -07 000000512 INF: FPGA: Recv ZSGSRD 35137 17-03-17 23:46:56.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:56.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:56.248 -07 000000512 INF: FPGA: Recv ZSGSRD 35137 17-03-17 23:46:56.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:56.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:56.258 -07 000000576 INF: FPGA: Recv ZSGSRD 35137 17-03-17 23:46:56.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:56.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:46:56.268 -07 000000433 INF: FPGA: Recv ZSGSRD 35139 17-03-17 23:46:56.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:56.278 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:46:56.278 -07 000000576 INF: FPGA: Recv ZPIEZORD 30768 17-03-17 23:46:56.288 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:46:56.288 -07 000000610 INF: Z Motor: Piezo is near 45.7 V (nominally 0 to 100 V), expect near 55.3 V, since DAC is at 5.535 V. Piezo Error = -9.6 V. 17-03-17 23:46:56.288 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -166.0 um, Read 10 ADC samples: Avg = 35137 (-165.2 uncal um), Error = 0.9 uncal um, Median = 35137 (-165.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 35132 (-165.2 uncal um), Max = 35139 (-165.2 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-17 23:46:56.288 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35137, posNoise = 2, negNoise = 5 17-03-17 23:46:56.288 -07 000000610 INF: Z Motor: After move to -0.166038, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:46:56.288 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms) 17-03-17 23:46:56.288 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:46:56.288 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:46:56.288 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:46:56.288 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 23:46:56.288 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 23:46:56.288 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 23:46:56.288 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:46:56.288 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:46:56.288 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-17 23:46:56.288 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 23:46:56.288 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:46:56.288 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 23:46:56.298 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-17 23:46:56.298 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 23:46:56.298 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-17 23:46:56.298 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 23:46:56.308 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms. 17-03-17 23:46:56.308 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms. 17-03-17 23:46:56.308 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms. 17-03-17 23:46:56.308 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms. 17-03-17 23:46:56.318 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 36448 150\n [Camera] 17-03-17 23:46:56.508 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 23:46:57.098 -07 000000547 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:46:57.098 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 77. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1270, R2=1321, Total=2591. Warn if over 250 bubbles per interval. 17-03-17 23:46:57.558 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229 17-03-17 23:46:57.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229 17-03-17 23:46:57.558 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:46:57.558 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229 17-03-17 23:46:57.558 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229 17-03-17 23:46:57.558 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:46:57.558 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:46:57.558 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start. 17-03-17 23:46:57.558 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:46:57.558 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start. 17-03-17 23:46:57.748 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36448 1422 17-03-17 23:46:57.888 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572 17-03-17 23:46:57.958 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 397 ms. 17-03-17 23:46:57.958 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms. 17-03-17 23:46:57.958 -07 000000547 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:46:57.958 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 397 ms. 17-03-17 23:46:57.958 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms. 17-03-17 23:46:57.958 -07 000000433 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:46:57.958 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:46:57.958 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms. 17-03-17 23:46:57.968 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:46:57.968 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms. 17-03-17 23:46:58.138 -07 000000576 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 78, FrontChillerTemperature: 4.001704, 17-03-17 23:46:58.398 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072 17-03-17 23:46:58.398 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072 17-03-17 23:46:58.398 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:46:58.398 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072 17-03-17 23:46:58.398 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072 17-03-17 23:46:58.398 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:46:58.398 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:46:58.398 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start. 17-03-17 23:46:58.408 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:46:58.408 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start. 17-03-17 23:46:58.588 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP 2265 17-03-17 23:46:58.588 -07 000000623 INF: FPGA: Recv CAMDBLSNAP 17-03-17 23:46:58.588 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 36448 150' command took 2 ms to send, 2262 ms to get response, and 2272 ms overall 17-03-17 23:46:58.588 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-17 23:46:58.588 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17626953125, Z-Position -0.16605089403619. ------ 17-03-17 23:46:58.708 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:46:58.708 -07 000000547 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.17236 mm 17-03-17 23:46:58.708 -07 000000547 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 23:46:58.708 -07 000000480 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:46:58.708 -07 000000433 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True) 17-03-17 23:46:58.708 -07 000000433 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm 17-03-17 23:46:58.708 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 37652, sync = True, waitForSettling = False) 17-03-17 23:46:58.708 -07 000000561 INF: Z Motor: Moving to -0.172360 mm, started at -0.166051 mm, distance = -6.31 um 17-03-17 23:46:58.718 -07 000000561 INF: FPGA: Xmit ZDACW 37652\n [Z Motor] 17-03-17 23:46:58.718 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:46:58.718 -07 000000480 INF: FPGA: Recv ZDACW 17-03-17 23:46:58.728 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:46:58.728 -07 000000561 INF: FPGA: 'ZDACW 37652' command took 0 ms to send, 0 ms to get response, and 12 ms overall 17-03-17 23:46:58.728 -07 000000618 INF: FPGA: Recv YRDPOS 149865 17-03-17 23:46:58.738 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 23 ms overall 17-03-17 23:46:58.738 -07 000000433 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:46:58.738 -07 000000433 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 23:46:58.738 -07 000000433 INF: Y Motor: Moving 1354 steps-33 17-03-17 23:46:58.738 -07 000000415 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 23:46:58.748 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:46:58.748 -07 000000618 INF: FPGA: Recv ZDACR 37652 17-03-17 23:46:58.758 -07 000000433 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 23:46:58.758 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-17 23:46:58.758 -07 000000561 INF: Z Motor: MoveAbsStepped took 43 ms (did NOT wait for settling yet)) 17-03-17 23:46:58.798 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 395 ms. 17-03-17 23:46:58.798 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms. 17-03-17 23:46:58.798 -07 000000576 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:46:58.798 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 393 ms. 17-03-17 23:46:58.798 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms. 17-03-17 23:46:58.798 -07 000000512 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:46:58.798 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:46:58.798 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms. 17-03-17 23:46:58.808 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms. 17-03-17 23:46:58.808 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms. 17-03-17 23:46:58.938 -07 000000512 INF: FPGA: Recv FOCMRRFOC 17-03-17 23:46:58.938 -07 000000415 INF: FPGA: 'FOCMRRFOC' command took 1 ms to send, 193 ms to get response, and 223 ms overall 17-03-17 23:46:59.128 -07 000000623 INF: FPGA: Recv YMVTILE 17-03-17 23:46:59.128 -07 000000433 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall 17-03-17 23:46:59.168 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:46:59.168 -07 000000480 INF: FPGA: Recv YRDPOS 151569 17-03-17 23:46:59.178 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:46:59.178 -07 000000433 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:46:59.178 -07 000000433 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm) 17-03-17 23:46:59.178 -07 000000433 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.846 mm, average velocity = 2.126 mm/sec 17-03-17 23:47:00.128 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:47:00.128 -07 000000618 INF: FPGA: Recv YRDPOS 151569 17-03-17 23:47:00.138 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:47:00.138 -07 000000433 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:47:00.148 -07 000000433 INF: Y Motor: After move to 74.022606, error = -0.014305, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 23:47:00.148 -07 000000433 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm) 17-03-17 23:47:00.148 -07 000000433 INF: Y Motor: Moved to 74.0083 after 1443 ms (table move) 17-03-17 23:47:00.158 -07 000000547 INF: Z Motor: EndOfMoveAbsStepped: target = -0.172360 mm (DAC = 37652) 17-03-17 23:47:00.158 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:00.158 -07 000000576 INF: FPGA: Recv ZSGSRD 36128 17-03-17 23:47:00.168 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 23:47:00.168 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:00.168 -07 000000480 INF: FPGA: Recv ZSGSRD 36121 17-03-17 23:47:00.178 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:00.178 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:00.178 -07 000000415 INF: FPGA: Recv ZSGSRD 36110 17-03-17 23:47:00.188 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:00.188 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:00.188 -07 000000623 INF: FPGA: Recv ZSGSRD 36120 17-03-17 23:47:00.198 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:00.198 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:00.198 -07 000000415 INF: FPGA: Recv ZSGSRD 36125 17-03-17 23:47:00.208 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:00.208 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:00.208 -07 000000512 INF: FPGA: Recv ZSGSRD 36127 17-03-17 23:47:00.218 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:47:00.218 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:00.218 -07 000000623 INF: FPGA: Recv ZSGSRD 36126 17-03-17 23:47:00.228 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:00.228 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:00.228 -07 000000415 INF: FPGA: Recv ZSGSRD 36117 17-03-17 23:47:00.238 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:00.238 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:00.238 -07 000000480 INF: FPGA: Recv ZSGSRD 36121 17-03-17 23:47:00.248 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:00.248 -07 000000547 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:00.248 -07 000000433 INF: FPGA: Recv ZSGSRD 36116 17-03-17 23:47:00.258 -07 000000547 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:00.258 -07 000000547 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:47:00.258 -07 000000576 INF: FPGA: Recv ZPIEZORD 32067 17-03-17 23:47:00.268 -07 000000547 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:00.268 -07 000000547 INF: Z Motor: Piezo is near 48.5 V (nominally 0 to 100 V), expect near 57.5 V, since DAC is at 5.745 V. Piezo Error = -8.9 V. 17-03-17 23:47:00.268 -07 000000547 INF: Z Motor: ReadAdcAverage: Commanded Z = -172.4 um, Read 10 ADC samples: Avg = 36121 (-171.5 uncal um), Error = 0.9 uncal um, Median = 36121 (-171.5 uncal um), StdDev = 6 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 36110 (-171.4 uncal um), Max = 36128 (-171.5 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 11 (0.1 uncal um) 17-03-17 23:47:00.268 -07 000000547 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36121, posNoise = 7, negNoise = 11 17-03-17 23:47:00.268 -07 000000547 INF: Z Motor: After move to -0.172360, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:47:00.268 -07 000000547 INF: Z Motor: Settle wait time = 1445 ms, measure time = 108 ms (allowed 150 ms), total time = 1553 ms 17-03-17 23:47:00.268 -07 000000547 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms 17-03-17 23:47:00.318 -07 000000547 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1607 ms 17-03-17 23:47:00.318 -07 000000547 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 23:47:00.318 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:47:00.318 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:47:00.318 -07 000000512 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:47:00.318 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:47:00.318 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 23:47:00.318 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:47:00.318 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:47:00.318 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 23:47:00.318 -07 000000561 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-17 23:47:00.318 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 23:47:00.328 -07 000000561 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms. 17-03-17 23:47:00.328 -07 000000561 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 13 ms. 17-03-17 23:47:00.338 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:47:00.378 -07 000000547 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 23:47:00.678 -07 000000561 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-17 23:47:00.678 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-17 23:47:00.678 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 23:47:00.678 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start. 17-03-17 23:47:00.718 -07 000000561 INF: FPGA: Recv @CAMSNAP 380 17-03-17 23:47:00.718 -07 000000561 INF: FPGA: Recv CAMSNAP 17-03-17 23:47:00.718 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 377 ms to get response, and 384 ms overall 17-03-17 23:47:00.808 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms. 17-03-17 23:47:00.808 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:47:00.808 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-17 23:47:00.808 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms. 17-03-17 23:47:00.918 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:47:00.918 -07 000000415 INF: Autofocus start 17-03-17 23:47:00.918 -07 000000415 INF: MeasureProfile start 17-03-17 23:47:00.918 -07 000000561 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:47:00.928 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 23:47:00.928 -07 000000547 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 23:47:00.928 -07 000000415 INF: MeasureProfile done 17-03-17 23:47:00.928 -07 000000415 INF: X=32 Z correction [um]=0.09220707 17-03-17 23:47:00.928 -07 000000415 INF: Autofocus finished 17-03-17 23:47:01.128 -07 000000415 INF: FPGA: Recv FOCMRRIMG 17-03-17 23:47:01.128 -07 000000547 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 23:47:01.128 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.00830078125, Z-position -0.172372318783683. ---------- 17-03-17 23:47:01.128 -07 000000610 INF: Cycle 78 Tile 18 Exposure Settings A 1037 G 500 T 500 C 1037 17-03-17 23:47:01.128 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36185, sync = True, waitForSettling = True) 17-03-17 23:47:01.128 -07 000000610 INF: Z Motor: Moving to -0.165644 mm, started at -0.172372 mm, distance = 6.73 um 17-03-17 23:47:01.138 -07 000000610 INF: FPGA: Xmit ZDACW 36185\n [Z Motor] 17-03-17 23:47:01.138 -07 000000547 INF: FPGA: Recv ZDACW 17-03-17 23:47:01.148 -07 000000610 INF: FPGA: 'ZDACW 36185' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:47:01.148 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:47:01.148 -07 000000561 INF: FPGA: Recv ZDACR 36185 17-03-17 23:47:01.158 -07 000000610 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:01.158 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:47:01.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:01.308 -07 000000561 INF: FPGA: Recv ZSGSRD 35075 17-03-17 23:47:01.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:47:01.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:01.318 -07 000000561 INF: FPGA: Recv ZSGSRD 35079 17-03-17 23:47:01.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:01.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:01.328 -07 000000415 INF: FPGA: Recv ZSGSRD 35072 17-03-17 23:47:01.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:01.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:01.338 -07 000000561 INF: FPGA: Recv ZSGSRD 35079 17-03-17 23:47:01.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:01.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:01.348 -07 000000547 INF: FPGA: Recv ZSGSRD 35074 17-03-17 23:47:01.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:01.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:01.358 -07 000000561 INF: FPGA: Recv ZSGSRD 35072 17-03-17 23:47:01.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:01.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:01.368 -07 000000547 INF: FPGA: Recv ZSGSRD 35075 17-03-17 23:47:01.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:01.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:01.378 -07 000000561 INF: FPGA: Recv ZSGSRD 35074 17-03-17 23:47:01.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:01.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:01.388 -07 000000561 INF: FPGA: Recv ZSGSRD 35080 17-03-17 23:47:01.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:01.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:01.398 -07 000000561 INF: FPGA: Recv ZSGSRD 35075 17-03-17 23:47:01.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:01.408 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:47:01.408 -07 000000547 INF: FPGA: Recv ZPIEZORD 30695 17-03-17 23:47:01.418 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:01.418 -07 000000610 INF: Z Motor: Piezo is near 45.6 V (nominally 0 to 100 V), expect near 55.2 V, since DAC is at 5.521 V. Piezo Error = -9.6 V. 17-03-17 23:47:01.418 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -165.6 um, Read 10 ADC samples: Avg = 35076 (-164.8 uncal um), Error = 0.8 uncal um, Median = 35075 (-164.8 uncal um), StdDev = 3 (0.0 uncal um), Range = 8 (0.1 uncal um), Min = 35072 (-164.8 uncal um), Max = 35080 (-164.8 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um) 17-03-17 23:47:01.418 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 35076, posNoise = 4, negNoise = 4 17-03-17 23:47:01.418 -07 000000610 INF: Z Motor: After move to -0.165644, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:47:01.418 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms) 17-03-17 23:47:01.418 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:47:01.418 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:47:01.418 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:47:01.418 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:47:01.418 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 23:47:01.418 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:47:01.418 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:47:01.418 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 23:47:01.418 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 23:47:01.418 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 23:47:01.418 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-17 23:47:01.418 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 23:47:01.428 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-17 23:47:01.428 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 23:47:01.428 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 5 ms. 17-03-17 23:47:01.428 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 23:47:01.438 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms. 17-03-17 23:47:01.438 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms. 17-03-17 23:47:01.438 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms. 17-03-17 23:47:01.438 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms. 17-03-17 23:47:01.448 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 36361 150\n [Camera] 17-03-17 23:47:01.648 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 23:47:02.098 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:47:02.098 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 77. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1270, R2=1321, Total=2591. Warn if over 250 bubbles per interval. 17-03-17 23:47:02.688 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229 17-03-17 23:47:02.688 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229 17-03-17 23:47:02.688 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:47:02.688 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229 17-03-17 23:47:02.688 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229 17-03-17 23:47:02.688 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:47:02.688 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:47:02.688 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start. 17-03-17 23:47:02.698 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:47:02.698 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start. 17-03-17 23:47:02.878 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36361 1422 17-03-17 23:47:03.028 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572 17-03-17 23:47:03.088 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 395 ms. 17-03-17 23:47:03.088 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms. 17-03-17 23:47:03.088 -07 000000547 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:47:03.088 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:47:03.088 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms. 17-03-17 23:47:03.088 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 397 ms. 17-03-17 23:47:03.088 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms. 17-03-17 23:47:03.088 -07 000000475 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:47:03.098 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:47:03.098 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms. 17-03-17 23:47:03.498 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 78, FrontChillerTemperature: 3.990831, 17-03-17 23:47:03.528 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072 17-03-17 23:47:03.528 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072 17-03-17 23:47:03.528 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:47:03.528 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:47:03.528 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) start. 17-03-17 23:47:03.528 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072 17-03-17 23:47:03.528 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072 17-03-17 23:47:03.528 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:47:03.528 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:47:03.528 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start. 17-03-17 23:47:03.718 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP 2265 17-03-17 23:47:03.718 -07 000000409 INF: FPGA: Recv CAMDBLSNAP 17-03-17 23:47:03.718 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 36361 150' command took 2 ms to send, 2266 ms to get response, and 2275 ms overall 17-03-17 23:47:03.718 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 0 - Best Z for this model is: -0.172880 17-03-17 23:47:03.718 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.00830078125, Z-Position -0.165659017095542. ------ 17-03-17 23:47:03.728 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:47:03.728 -07 000000409 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.17186 mm 17-03-17 23:47:03.728 -07 000000409 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 23:47:03.728 -07 000000475 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True) 17-03-17 23:47:03.728 -07 000000415 INF: Z Motor: Entering MoveAbsStepped (DAC = 37543, sync = True, waitForSettling = False) 17-03-17 23:47:03.728 -07 000000415 INF: Z Motor: Moving to -0.171861 mm, started at -0.165659 mm, distance = -6.20 um 17-03-17 23:47:03.728 -07 000000475 INF: Y Motor: Moving to 74.8526 mm, started at 74.0083 mm, delta = 0.8443 mm 17-03-17 23:47:03.738 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:47:03.748 -07 000000415 INF: FPGA: Xmit ZDACW 37543\n [Z Motor] 17-03-17 23:47:03.938 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) end. Duration was 404 ms. 17-03-17 23:47:03.938 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 405 ms. 17-03-17 23:47:03.938 -07 000000502 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:47:03.938 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 402 ms. 17-03-17 23:47:03.938 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms. 17-03-17 23:47:03.938 -07 000000482 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:47:03.938 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:47:03.938 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms. 17-03-17 23:47:03.938 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms. 17-03-17 23:47:03.948 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms. 17-03-17 23:47:03.948 -07 000000502 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:47:03.948 -07 000000502 INF: FPGA: Recv YRDPOS 151570 17-03-17 23:47:03.948 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 219 ms to get response, and 227 ms overall 17-03-17 23:47:03.948 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 209 ms to get response, and 224 ms overall 17-03-17 23:47:03.948 -07 000000502 INF: FPGA: Recv ZDACW 17-03-17 23:47:03.948 -07 000000415 INF: FPGA: 'ZDACW 37543' command took 0 ms to send, 199 ms to get response, and 224 ms overall 17-03-17 23:47:03.948 -07 000000475 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:47:03.958 -07 000000415 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:47:03.958 -07 000000482 INF: FPGA: Recv ZDACR 37543 17-03-17 23:47:03.958 -07 000000475 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 23:47:03.958 -07 000000475 INF: Y Motor: Moving 1350 steps-29 17-03-17 23:47:03.968 -07 000000415 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:47:03.968 -07 000000415 INF: Z Motor: MoveAbsStepped took 235 ms (did NOT wait for settling yet)) 17-03-17 23:47:03.968 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 23:47:03.978 -07 000000475 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 23:47:04.168 -07 000000502 INF: FPGA: Recv FOCMRRFOC 17-03-17 23:47:04.168 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 212 ms overall 17-03-17 23:47:04.358 -07 000000415 INF: FPGA: Recv YMVTILE 17-03-17 23:47:04.358 -07 000000475 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 370 ms to get response, and 395 ms overall 17-03-17 23:47:04.378 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:47:04.388 -07 000000482 INF: FPGA: Recv YRDPOS 153255 17-03-17 23:47:04.388 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall 17-03-17 23:47:04.388 -07 000000475 INF: Y Motor: Encoder = 153255 = motor step 119730.5 = 74.8315 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:47:04.388 -07 000000475 INF: Y Motor: Position error before settling (table move) = -43 encoder counts (-0.021 mm) 17-03-17 23:47:04.388 -07 000000475 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.844 mm, average velocity = 2.137 mm/sec 17-03-17 23:47:05.338 -07 000000475 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:47:05.728 -07 000000502 INF: FPGA: Recv YRDPOS 153256 17-03-17 23:47:05.728 -07 000000475 INF: FPGA: 'YRDPOS' command took 0 ms to send, 380 ms to get response, and 390 ms overall 17-03-17 23:47:05.728 -07 000000475 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:47:05.748 -07 000000475 INF: Y Motor: After move to 74.852608, error = -0.020576, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 23:47:05.748 -07 000000475 INF: Y Motor: Position error after settling (table move) = -42 encoder counts (-0.021 mm), Delta during settling = 1 counts (0.000 mm) 17-03-17 23:47:05.748 -07 000000475 INF: Y Motor: Moved to 74.8320 after 2015 ms (table move) 17-03-17 23:47:05.748 -07 000000409 INF: Z Motor: EndOfMoveAbsStepped: target = -0.171861 mm (DAC = 37543) 17-03-17 23:47:05.748 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:05.748 -07 000000502 INF: FPGA: Recv ZSGSRD 36046 17-03-17 23:47:05.758 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 23:47:05.758 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:05.758 -07 000000459 INF: FPGA: Recv ZSGSRD 36044 17-03-17 23:47:05.768 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:05.768 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:05.768 -07 000000561 INF: FPGA: Recv ZSGSRD 36043 17-03-17 23:47:05.778 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:05.778 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:05.778 -07 000000502 INF: FPGA: Recv ZSGSRD 36044 17-03-17 23:47:05.788 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:05.788 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:05.788 -07 000000475 INF: FPGA: Recv ZSGSRD 36044 17-03-17 23:47:05.798 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:05.798 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:05.798 -07 000000502 INF: FPGA: Recv ZSGSRD 36041 17-03-17 23:47:05.808 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:05.808 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:05.808 -07 000000459 INF: FPGA: Recv ZSGSRD 36037 17-03-17 23:47:05.818 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:05.818 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:05.818 -07 000000459 INF: FPGA: Recv ZSGSRD 36046 17-03-17 23:47:05.828 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:05.828 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:05.828 -07 000000502 INF: FPGA: Recv ZSGSRD 36050 17-03-17 23:47:05.838 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:05.838 -07 000000409 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:05.838 -07 000000475 INF: FPGA: Recv ZSGSRD 36042 17-03-17 23:47:05.848 -07 000000409 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:05.848 -07 000000409 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:47:05.848 -07 000000561 INF: FPGA: Recv ZPIEZORD 31981 17-03-17 23:47:05.858 -07 000000409 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:05.858 -07 000000409 INF: Z Motor: Piezo is near 48.3 V (nominally 0 to 100 V), expect near 57.3 V, since DAC is at 5.729 V. Piezo Error = -9.0 V. 17-03-17 23:47:05.858 -07 000000409 INF: Z Motor: ReadAdcAverage: Commanded Z = -171.9 um, Read 10 ADC samples: Avg = 36044 (-171.0 uncal um), Error = 0.9 uncal um, Median = 36044 (-171.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 36037 (-171.0 uncal um), Max = 36050 (-171.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um) 17-03-17 23:47:05.858 -07 000000409 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 36044, posNoise = 6, negNoise = 7 17-03-17 23:47:05.858 -07 000000409 INF: Z Motor: After move to -0.171861, error = -0.000017, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:47:05.858 -07 000000409 INF: Z Motor: Settle wait time = 2018 ms, measure time = 107 ms (allowed 150 ms), total time = 2125 ms 17-03-17 23:47:05.858 -07 000000409 INF: Z Motor: Waiting extra 43 ms after reading position to reach expected total of 150 ms 17-03-17 23:47:05.908 -07 000000409 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2177 ms 17-03-17 23:47:05.908 -07 000000409 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 23:47:05.908 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:47:05.908 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:47:05.908 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:47:05.908 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:47:05.908 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 23:47:05.908 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:47:05.918 -07 000000502 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:47:05.918 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 23:47:05.918 -07 000000502 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-17 23:47:05.918 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 23:47:05.928 -07 000000502 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 14 ms. 17-03-17 23:47:05.928 -07 000000502 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 18 ms. 17-03-17 23:47:05.928 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:47:05.978 -07 000000459 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 23:47:06.278 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-17 23:47:06.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-17 23:47:06.278 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 23:47:06.278 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 615841328, 0x0, 559484976) start. 17-03-17 23:47:06.318 -07 000000502 INF: FPGA: Recv @CAMSNAP 380 17-03-17 23:47:06.318 -07 000000409 INF: FPGA: Recv CAMSNAP 17-03-17 23:47:06.318 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 2 ms to send, 376 ms to get response, and 386 ms overall 17-03-17 23:47:06.408 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 615841328, 0x0, 559484976) end. Duration was 126 ms. 17-03-17 23:47:06.408 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:47:06.408 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-17 23:47:06.408 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms. 17-03-17 23:47:06.518 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:47:06.518 -07 000000502 INF: Autofocus start 17-03-17 23:47:06.518 -07 000000502 INF: MeasureProfile start 17-03-17 23:47:06.518 -07 000000561 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:47:06.528 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 23:47:06.528 -07 000000459 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 23:47:06.528 -07 000000502 INF: MeasureProfile done 17-03-17 23:47:06.528 -07 000000502 INF: X=-16 Z correction [um]=-0.1496812 17-03-17 23:47:06.528 -07 000000502 INF: Autofocus finished 17-03-17 23:47:06.728 -07 000000502 INF: FPGA: Recv FOCMRRIMG 17-03-17 23:47:06.728 -07 000000459 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 23:47:06.728 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83203125, Z-position -0.171877654448767. ---------- 17-03-17 23:47:06.728 -07 000000610 INF: Cycle 78 Tile 19 Exposure Settings A 1037 G 500 T 500 C 1037 17-03-17 23:47:06.738 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 36023, sync = True, waitForSettling = True) 17-03-17 23:47:06.738 -07 000000610 INF: Z Motor: Moving to -0.164903 mm, started at -0.171878 mm, distance = 6.97 um 17-03-17 23:47:06.738 -07 000000610 INF: FPGA: Xmit ZDACW 36023\n [Z Motor] 17-03-17 23:47:06.738 -07 000000475 INF: FPGA: Recv ZDACW 17-03-17 23:47:06.748 -07 000000610 INF: FPGA: 'ZDACW 36023' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:06.748 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:47:06.748 -07 000000475 INF: FPGA: Recv ZDACR 36023 17-03-17 23:47:06.758 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:06.758 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:47:06.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:06.908 -07 000000409 INF: FPGA: Recv ZSGSRD 34962 17-03-17 23:47:06.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:06.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:06.918 -07 000000409 INF: FPGA: Recv ZSGSRD 34953 17-03-17 23:47:06.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:06.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:06.928 -07 000000459 INF: FPGA: Recv ZSGSRD 34966 17-03-17 23:47:06.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:06.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:06.938 -07 000000409 INF: FPGA: Recv ZSGSRD 34958 17-03-17 23:47:06.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:06.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:06.948 -07 000000561 INF: FPGA: Recv ZSGSRD 34958 17-03-17 23:47:06.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:06.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:06.958 -07 000000502 INF: FPGA: Recv ZSGSRD 34964 17-03-17 23:47:06.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:06.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:06.968 -07 000000459 INF: FPGA: Recv ZSGSRD 34956 17-03-17 23:47:06.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:06.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:06.978 -07 000000459 INF: FPGA: Recv ZSGSRD 34965 17-03-17 23:47:06.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:06.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:06.988 -07 000000502 INF: FPGA: Recv ZSGSRD 34956 17-03-17 23:47:06.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:06.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:06.998 -07 000000561 INF: FPGA: Recv ZSGSRD 34959 17-03-17 23:47:07.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:07.008 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:47:07.008 -07 000000459 INF: FPGA: Recv ZPIEZORD 30568 17-03-17 23:47:07.018 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:07.018 -07 000000610 INF: Z Motor: Piezo is near 45.3 V (nominally 0 to 100 V), expect near 55.0 V, since DAC is at 5.497 V. Piezo Error = -9.7 V. 17-03-17 23:47:07.018 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -164.9 um, Read 10 ADC samples: Avg = 34960 (-164.1 uncal um), Error = 0.9 uncal um, Median = 34958 (-164.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 34953 (-164.0 uncal um), Max = 34966 (-164.1 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um) 17-03-17 23:47:07.018 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 34960, posNoise = 6, negNoise = 7 17-03-17 23:47:07.018 -07 000000610 INF: Z Motor: After move to -0.164903, error = -0.000011, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:47:07.018 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms) 17-03-17 23:47:07.018 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:47:07.018 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:47:07.018 -07 000000409 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:47:07.018 -07 000000561 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:47:07.018 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 23:47:07.018 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:47:07.018 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 23:47:07.018 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 23:47:07.018 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:47:07.018 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 23:47:07.018 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-17 23:47:07.018 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 23:47:07.018 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms. 17-03-17 23:47:07.018 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 23:47:07.028 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-17 23:47:07.028 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 23:47:07.038 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms. 17-03-17 23:47:07.038 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms. 17-03-17 23:47:07.038 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms. 17-03-17 23:47:07.038 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms. 17-03-17 23:47:07.038 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 36200 150\n [Camera] 17-03-17 23:47:07.098 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:47:07.098 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 77. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1270, R2=1321, Total=2591. Warn if over 250 bubbles per interval. 17-03-17 23:47:07.238 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 23:47:08.278 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229 17-03-17 23:47:08.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229 17-03-17 23:47:08.278 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:47:08.278 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:47:08.278 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start. 17-03-17 23:47:08.288 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229 17-03-17 23:47:08.288 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229 17-03-17 23:47:08.288 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:47:08.288 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:47:08.288 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start. 17-03-17 23:47:08.478 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 36200 1422 17-03-17 23:47:08.618 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572 17-03-17 23:47:08.688 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 401 ms. 17-03-17 23:47:08.688 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 402 ms. 17-03-17 23:47:08.688 -07 000000409 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:47:08.688 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 401 ms. 17-03-17 23:47:08.688 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms. 17-03-17 23:47:08.688 -07 000000502 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:47:08.688 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:47:08.688 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms. 17-03-17 23:47:08.688 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:47:08.698 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms. 17-03-17 23:47:08.858 -07 000000561 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 78, FrontChillerTemperature: 3.986717, 17-03-17 23:47:09.128 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072 17-03-17 23:47:09.128 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072 17-03-17 23:47:09.128 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:47:09.128 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:47:09.128 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start. 17-03-17 23:47:09.128 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072 17-03-17 23:47:09.128 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072 17-03-17 23:47:09.128 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:47:09.128 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:47:09.128 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start. 17-03-17 23:47:09.438 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 2265 17-03-17 23:47:09.438 -07 000000459 INF: FPGA: Recv CAMDBLSNAP 17-03-17 23:47:09.438 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 36200 150' command took 2 ms to send, 2383 ms to get response, and 2394 ms overall 17-03-17 23:47:09.508 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 383 ms. 17-03-17 23:47:09.508 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms. 17-03-17 23:47:09.508 -07 000000409 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:47:09.508 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 387 ms. 17-03-17 23:47:09.508 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms. 17-03-17 23:47:09.508 -07 000000561 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:47:09.518 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:47:09.518 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms. 17-03-17 23:47:09.518 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 395 ms. 17-03-17 23:47:09.518 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start. 17-03-17 23:47:09.518 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms. 17-03-17 23:47:09.558 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 41 ms. 17-03-17 23:47:09.558 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start. 17-03-17 23:47:09.608 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 41 ms. 17-03-17 23:47:09.608 -07 000000610 INF: Move compensator for Bottom-surface imaging. 17-03-17 23:47:09.608 -07 000000610 INF: FPGA: Xmit EMCUR 80\n [Compensator] 17-03-17 23:47:09.608 -07 000000459 INF: FPGA: Recv EMCUR 17-03-17 23:47:09.618 -07 000000610 INF: FPGA: 'EMCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:47:09.618 -07 000000610 INF: FPGA: Xmit EMIN 20 40\n [Compensator] 17-03-17 23:47:10.118 -07 000000561 INF: FPGA: Recv EMIN 17-03-17 23:47:10.118 -07 000000610 INF: FPGA: 'EMIN 20 40' command took 0 ms to send, 493 ms to get response, and 502 ms overall 17-03-17 23:47:10.118 -07 000000610 INF: FPGA: Xmit EMCUR 60\n [Compensator] 17-03-17 23:47:10.118 -07 000000502 INF: FPGA: Recv EMCUR 17-03-17 23:47:10.128 -07 000000610 INF: FPGA: 'EMCUR 60' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 23:47:10.128 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-17 23:47:10.128 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 1 at Y-position 74.83203125, Z-Position -0.164913808487098. ------ 17-03-17 23:47:10.138 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 59.9126 mm, moving Z to -0.13993 mm 17-03-17 23:47:10.138 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 23:47:10.138 -07 000000561 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:47:10.138 -07 000000627 INF: Y Motor: Entering MoveAbsStepped (target = 95860 steps, sync = True, waitForSettling = True) 17-03-17 23:47:10.138 -07 000000627 INF: Y Motor: Moving to 59.9126 mm, started at 74.8320 mm, delta = -14.9194 mm 17-03-17 23:47:10.148 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:47:10.148 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 30568, sync = True, waitForSettling = False) 17-03-17 23:47:10.148 -07 000000486 INF: Z Motor: Moving to -0.139931 mm, started at -0.164914 mm, distance = 24.98 um 17-03-17 23:47:10.158 -07 000000486 INF: FPGA: Xmit ZDACW 30568\n [Z Motor] 17-03-17 23:47:10.728 -07 000000448 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:47:10.728 -07 000000448 INF: FPGA: Recv YRDPOS 153257 17-03-17 23:47:10.728 -07 000000448 INF: FPGA: Recv ZDACW 17-03-17 23:47:10.728 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 570 ms to get response, and 580 ms overall 17-03-17 23:47:10.728 -07 000000627 INF: Y Motor: Encoder = 153257 = motor step 119732.0 = 74.8325 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:47:10.728 -07 000000486 INF: FPGA: 'ZDACW 30568' command took 0 ms to send, 560 ms to get response, and 580 ms overall 17-03-17 23:47:10.728 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:47:10.728 -07 000000561 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 580 ms to get response, and 584 ms overall 17-03-17 23:47:10.728 -07 000000448 INF: FPGA: Recv ZDACR 30568 17-03-17 23:47:10.728 -07 000000627 INF: Y Motor: Last commanded position = 74.8526 mm (119764.2 steps), delta from last commanded position = -14.9400 mm (-23904.0 steps). UsingTableMove = False 17-03-17 23:47:10.728 -07 000000627 INF: Y Motor: Moving to 122701 encoder counts 17-03-17 23:47:10.738 -07 000000486 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:47:10.738 -07 000000627 INF: FPGA: Xmit YMVTO 122701\n [Y Motor] 17-03-17 23:47:10.738 -07 000000486 INF: Z Motor: MoveAbsStepped took 589 ms (did NOT wait for settling yet)) 17-03-17 23:47:10.748 -07 000000561 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 23:47:10.948 -07 000000448 INF: FPGA: Recv FOCMRRFOC 17-03-17 23:47:10.948 -07 000000561 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 222 ms overall 17-03-17 23:47:12.098 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:47:12.098 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 77. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1270, R2=1321, Total=2591. Warn if over 250 bubbles per interval. 17-03-17 23:47:12.358 -07 000000561 INF: FPGA: Recv YMVTO 122703 23904 17-03-17 23:47:12.358 -07 000000627 INF: FPGA: 'YMVTO 122701' command took 0 ms to send, 1618 ms to get response, and 1633 ms overall 17-03-17 23:47:12.358 -07 000000627 INF: Y Motor: Position error before settling = 2 encoder counts (0.001 mm) 17-03-17 23:47:12.358 -07 000000627 INF: Y Motor: To move from 74.833 to 59.913 (-14.919 mm) should take 23872 steps, but required 23904 steps (14.940 mm). Slippage = 0.020 mm (0.00%). 17-03-17 23:47:12.358 -07 000000627 INF: Y Motor: FPGA move command 'YMVTO 122701' took 1633 ms, distance = 14.919 mm, average velocity = 9.136 mm/sec 17-03-17 23:47:14.218 -07 000000486 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 78, FrontChillerTemperature: 4.003063, 17-03-17 23:47:15.208 -07 000000627 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:47:15.208 -07 000000448 INF: FPGA: Recv YRDPOS 122698 17-03-17 23:47:15.218 -07 000000627 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:47:15.218 -07 000000627 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:47:15.248 -07 000000627 INF: Y Motor: After move to 59.912609, error = -0.001476, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 23:47:15.248 -07 000000627 INF: Y Motor: Position error after settling = -3 encoder counts (-0.001 mm), Delta during settling = -5 counts (-0.002 mm) 17-03-17 23:47:15.248 -07 000000627 INF: Y Motor: Moved to 59.9111 after 5106 ms 17-03-17 23:47:15.248 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.139931 mm (DAC = 30568) 17-03-17 23:47:15.258 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:15.258 -07 000000618 INF: FPGA: Recv ZSGSRD 31074 17-03-17 23:47:15.268 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:47:15.268 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:15.268 -07 000000623 INF: FPGA: Recv ZSGSRD 31072 17-03-17 23:47:15.278 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:15.278 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:15.278 -07 000000618 INF: FPGA: Recv ZSGSRD 31075 17-03-17 23:47:15.288 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:15.288 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:15.288 -07 000000448 INF: FPGA: Recv ZSGSRD 31071 17-03-17 23:47:15.298 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:15.298 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:15.298 -07 000000561 INF: FPGA: Recv ZSGSRD 31067 17-03-17 23:47:15.308 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:15.308 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:15.308 -07 000000627 INF: FPGA: Recv ZSGSRD 31079 17-03-17 23:47:15.318 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:15.318 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:15.318 -07 000000561 INF: FPGA: Recv ZSGSRD 31070 17-03-17 23:47:15.328 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:15.328 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:15.328 -07 000000618 INF: FPGA: Recv ZSGSRD 31073 17-03-17 23:47:15.338 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:15.338 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:15.338 -07 000000561 INF: FPGA: Recv ZSGSRD 31074 17-03-17 23:47:15.348 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:15.348 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:15.348 -07 000000623 INF: FPGA: Recv ZSGSRD 31073 17-03-17 23:47:15.358 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:15.358 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:47:15.358 -07 000000561 INF: FPGA: Recv ZPIEZORD 26505 17-03-17 23:47:15.368 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:15.368 -07 000000382 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 46.6 V, since DAC is at 4.664 V. Piezo Error = -10.0 V. 17-03-17 23:47:15.368 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -139.9 um, Read 10 ADC samples: Avg = 31073 (-139.1 uncal um), Error = 0.8 uncal um, Median = 31073 (-139.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 31067 (-139.1 uncal um), Max = 31079 (-139.2 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um) 17-03-17 23:47:15.368 -07 000000382 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 31073, posNoise = 6, negNoise = 6 17-03-17 23:47:15.368 -07 000000382 INF: Z Motor: After move to -0.139931, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:47:15.368 -07 000000382 INF: Z Motor: Settle wait time = 5109 ms, measure time = 110 ms (allowed 150 ms), total time = 5219 ms 17-03-17 23:47:15.368 -07 000000382 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms 17-03-17 23:47:15.408 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 5263 ms 17-03-17 23:47:15.408 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 23:47:15.408 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:47:15.408 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:47:15.408 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:47:15.408 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 23:47:15.408 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:47:15.408 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:47:15.408 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:47:15.408 -07 000000512 INF: Camera: sBCa_SetPowerMode(785074288, 1) start. 17-03-17 23:47:15.428 -07 000000512 INF: Camera: sBCa_SetPowerMode(785074288, 1) end. Duration was 20 ms. 17-03-17 23:47:15.428 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 23:47:15.438 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-17 23:47:15.438 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 23:47:15.438 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms. 17-03-17 23:47:15.438 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 30 ms. 17-03-17 23:47:15.448 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:47:15.488 -07 000000561 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 23:47:15.788 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-17 23:47:15.788 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-17 23:47:15.788 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 23:47:15.788 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start. 17-03-17 23:47:15.828 -07 000000627 INF: FPGA: Recv @CAMSNAP 380 17-03-17 23:47:15.828 -07 000000623 INF: FPGA: Recv CAMSNAP 17-03-17 23:47:15.828 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall 17-03-17 23:47:15.908 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 114 ms. 17-03-17 23:47:15.908 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:47:15.908 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-17 23:47:15.908 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms. 17-03-17 23:47:15.928 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:47:15.928 -07 000000627 INF: Image SNR check: start 17-03-17 23:47:15.928 -07 000000486 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:47:15.938 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 23:47:15.938 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 23:47:15.948 -07 000000627 INF: Image SNR check: pass [peak (Max-Min)=166.85] 17-03-17 23:47:15.948 -07 000000627 INF: Autofocus start 17-03-17 23:47:15.948 -07 000000627 INF: MeasureProfile start 17-03-17 23:47:15.958 -07 000000627 INF: MeasureProfile done 17-03-17 23:47:15.958 -07 000000627 INF: X=-79 Z correction [um]=-0.3879607 17-03-17 23:47:15.958 -07 000000627 INF: Autofocus finished 17-03-17 23:47:16.138 -07 000000561 INF: FPGA: Recv FOCMRRIMG 17-03-17 23:47:16.138 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 23:47:16.138 -07 000000610 INF: ------------ Scan Snapping tile 1 at Y-position 59.9111328125, Z-position -0.139942895892073. ---------- 17-03-17 23:47:16.138 -07 000000610 INF: Cycle 78 Tile 1 Exposure Settings A 1037 G 500 T 500 C 1037 17-03-17 23:47:16.148 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28996, sync = True, waitForSettling = True) 17-03-17 23:47:16.148 -07 000000610 INF: Z Motor: Moving to -0.132735 mm, started at -0.139943 mm, distance = 7.21 um 17-03-17 23:47:16.148 -07 000000610 INF: FPGA: Xmit ZDACW 28996\n [Z Motor] 17-03-17 23:47:16.148 -07 000000623 INF: FPGA: Recv ZDACW 17-03-17 23:47:16.158 -07 000000610 INF: FPGA: 'ZDACW 28996' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:16.158 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:47:16.158 -07 000000512 INF: FPGA: Recv ZDACR 28996 17-03-17 23:47:16.168 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:16.168 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:47:16.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:16.318 -07 000000627 INF: FPGA: Recv ZSGSRD 29953 17-03-17 23:47:16.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:47:16.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:16.328 -07 000000512 INF: FPGA: Recv ZSGSRD 29950 17-03-17 23:47:16.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:16.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:16.338 -07 000000623 INF: FPGA: Recv ZSGSRD 29957 17-03-17 23:47:16.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:16.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:16.348 -07 000000382 INF: FPGA: Recv ZSGSRD 29947 17-03-17 23:47:16.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:16.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:16.358 -07 000000480 INF: FPGA: Recv ZSGSRD 29955 17-03-17 23:47:16.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:16.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:16.368 -07 000000627 INF: FPGA: Recv ZSGSRD 29955 17-03-17 23:47:16.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:16.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:16.378 -07 000000618 INF: FPGA: Recv ZSGSRD 29943 17-03-17 23:47:16.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:16.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:16.398 -07 000000512 INF: FPGA: Recv ZSGSRD 29955 17-03-17 23:47:16.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-17 23:47:16.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:16.398 -07 000000627 INF: FPGA: Recv ZSGSRD 29954 17-03-17 23:47:16.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:16.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:16.408 -07 000000382 INF: FPGA: Recv ZSGSRD 29949 17-03-17 23:47:16.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:16.418 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:47:16.418 -07 000000382 INF: FPGA: Recv ZPIEZORD 25311 17-03-17 23:47:16.428 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:16.428 -07 000000610 INF: Z Motor: Piezo is near 34.1 V (nominally 0 to 100 V), expect near 44.2 V, since DAC is at 4.425 V. Piezo Error = -10.2 V. 17-03-17 23:47:16.428 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.7 um, Read 10 ADC samples: Avg = 29952 (-132.0 uncal um), Error = 0.8 uncal um, Median = 29954 (-132.0 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29943 (-131.9 uncal um), Max = 29957 (-132.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 9 (0.1 uncal um) 17-03-17 23:47:16.428 -07 000000610 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29952, posNoise = 5, negNoise = 9 17-03-17 23:47:16.428 -07 000000610 INF: Z Motor: After move to -0.132735, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:47:16.428 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms) 17-03-17 23:47:16.428 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:47:16.428 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:47:16.428 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:47:16.428 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:47:16.428 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 23:47:16.428 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:47:16.428 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 23:47:16.428 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 23:47:16.428 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:47:16.428 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 23:47:16.428 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-17 23:47:16.428 -07 000000512 INF: Camera: sBCa_SetPowerMode(785074704, 1) start. 17-03-17 23:47:16.428 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms. 17-03-17 23:47:16.428 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 23:47:16.448 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms. 17-03-17 23:47:16.448 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 17 ms. 17-03-17 23:47:16.448 -07 000000512 INF: Camera: sBCa_SetPowerMode(785074704, 1) end. Duration was 21 ms. 17-03-17 23:47:16.448 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 23:47:16.458 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-17 23:47:16.458 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 23:47:16.468 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms. 17-03-17 23:47:16.468 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 39 ms. 17-03-17 23:47:16.478 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 29173 150\n [Camera] 17-03-17 23:47:16.668 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 23:47:17.098 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:47:17.098 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 77. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1270, R2=1321, Total=2591. Warn if over 250 bubbles per interval. 17-03-17 23:47:17.708 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229 17-03-17 23:47:17.708 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229 17-03-17 23:47:17.708 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:47:17.718 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229 17-03-17 23:47:17.718 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229 17-03-17 23:47:17.718 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:47:17.718 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:47:17.718 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start. 17-03-17 23:47:17.718 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:47:17.718 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start. 17-03-17 23:47:17.908 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29173 1422 17-03-17 23:47:18.048 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572 17-03-17 23:47:18.108 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 396 ms. 17-03-17 23:47:18.108 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms. 17-03-17 23:47:18.108 -07 000000512 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:47:18.118 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 396 ms. 17-03-17 23:47:18.118 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:47:18.118 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms. 17-03-17 23:47:18.118 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms. 17-03-17 23:47:18.118 -07 000000486 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:47:18.118 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:47:18.128 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms. 17-03-17 23:47:18.558 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072 17-03-17 23:47:18.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072 17-03-17 23:47:18.558 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:47:18.558 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072 17-03-17 23:47:18.558 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072 17-03-17 23:47:18.558 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:47:18.558 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:47:18.558 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start. 17-03-17 23:47:18.568 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:47:18.568 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1094749800, 0x0, 418435064) start. 17-03-17 23:47:18.748 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP 2265 17-03-17 23:47:18.748 -07 000000512 INF: FPGA: Recv CAMDBLSNAP 17-03-17 23:47:18.748 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 29173 150' command took 2 ms to send, 2262 ms to get response, and 2274 ms overall 17-03-17 23:47:18.858 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-17 23:47:18.858 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 2 at Y-position 59.9111328125, Z-Position -0.132741354081159. ------ 17-03-17 23:47:18.868 -07 000000512 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:47:18.868 -07 000000486 INF: Y Motor: MoveYZ optimized starting. Moving Y to 60.7426 mm, moving Z to -0.13880 mm 17-03-17 23:47:18.868 -07 000000486 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 23:47:18.958 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 396 ms. 17-03-17 23:47:18.958 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms. 17-03-17 23:47:18.958 -07 000000561 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:47:18.958 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:47:18.958 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms. 17-03-17 23:47:18.958 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1094749800, 0x0, 418435064) end. Duration was 395 ms. 17-03-17 23:47:18.958 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms. 17-03-17 23:47:18.958 -07 000000480 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:47:18.968 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:47:18.968 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 97188 steps, sync = True, waitForSettling = True) 17-03-17 23:47:18.968 -07 000000561 INF: Y Motor: Moving to 60.7426 mm, started at 59.9111 mm, delta = 0.8315 mm 17-03-17 23:47:18.968 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:47:18.978 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms. 17-03-17 23:47:18.978 -07 000000480 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:47:18.978 -07 000000480 INF: FPGA: Recv YRDPOS 122698 17-03-17 23:47:18.978 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 9 ms to get response, and 10 ms overall 17-03-17 23:47:18.978 -07 000000561 INF: Y Motor: Encoder = 122698 = motor step 95857.8 = 59.9111 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:47:18.978 -07 000000561 INF: Y Motor: Last commanded position = 59.9126 mm (95860.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 23:47:18.988 -07 000000561 INF: Y Motor: Moving 1330 steps2 17-03-17 23:47:18.988 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 23:47:18.988 -07 000000512 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 109 ms to get response, and 116 ms overall 17-03-17 23:47:18.988 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 30320, sync = True, waitForSettling = False) 17-03-17 23:47:18.988 -07 000000480 INF: Z Motor: Moving to -0.138796 mm, started at -0.132741 mm, distance = -6.05 um 17-03-17 23:47:18.998 -07 000000512 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 23:47:19.008 -07 000000480 INF: FPGA: Xmit ZDACW 30320\n [Z Motor] 17-03-17 23:47:19.548 -07 000000576 INF: FPGA: Recv ZDACW 17-03-17 23:47:19.548 -07 000000576 INF: FPGA: Recv FOCMRRFOC 17-03-17 23:47:19.548 -07 000000576 INF: FPGA: Recv YMVTILE 17-03-17 23:47:19.548 -07 000000512 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 540 ms to get response, and 557 ms overall 17-03-17 23:47:19.548 -07 000000480 INF: FPGA: 'ZDACW 30320' command took 0 ms to send, 530 ms to get response, and 557 ms overall 17-03-17 23:47:19.548 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:47:19.548 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 550 ms to get response, and 560 ms overall 17-03-17 23:47:19.548 -07 000000576 INF: FPGA: Recv ZDACR 30320 17-03-17 23:47:19.558 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:47:19.558 -07 000000480 INF: Z Motor: MoveAbsStepped took 567 ms (did NOT wait for settling yet)) 17-03-17 23:47:19.578 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:47:19.588 -07 000000480 INF: FPGA: Recv YRDPOS 124381 17-03-17 23:47:19.588 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall 17-03-17 23:47:19.588 -07 000000561 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:47:19.588 -07 000000561 INF: Y Motor: Position error before settling (table move) = -20 encoder counts (-0.010 mm) 17-03-17 23:47:19.588 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 561 ms, distance = 0.831 mm, average velocity = 1.482 mm/sec 17-03-17 23:47:19.858 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 78, FrontChillerTemperature: 3.963579, 17-03-17 23:47:20.538 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:47:20.538 -07 000000512 INF: FPGA: Recv YRDPOS 124381 17-03-17 23:47:20.548 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:47:20.548 -07 000000561 INF: Y Motor: Encoder = 124381 = motor step 97172.7 = 60.7329 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:47:20.568 -07 000000561 INF: Y Motor: After move to 60.742607, error = -0.009697, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 23:47:20.568 -07 000000561 INF: Y Motor: Position error after settling (table move) = -20 encoder counts (-0.010 mm), Delta during settling = 0 counts (0.000 mm) 17-03-17 23:47:20.568 -07 000000561 INF: Y Motor: Moved to 60.7329 after 1598 ms (table move) 17-03-17 23:47:20.578 -07 000000486 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138796 mm (DAC = 30320) 17-03-17 23:47:20.578 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:20.578 -07 000000482 INF: FPGA: Recv ZSGSRD 30900 17-03-17 23:47:20.588 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:20.588 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:20.588 -07 000000433 INF: FPGA: Recv ZSGSRD 30895 17-03-17 23:47:20.598 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:20.598 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:20.598 -07 000000482 INF: FPGA: Recv ZSGSRD 30896 17-03-17 23:47:20.608 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:20.608 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:20.608 -07 000000576 INF: FPGA: Recv ZSGSRD 30897 17-03-17 23:47:20.618 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:20.618 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:20.618 -07 000000482 INF: FPGA: Recv ZSGSRD 30889 17-03-17 23:47:20.628 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:20.628 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:20.628 -07 000000512 INF: FPGA: Recv ZSGSRD 30891 17-03-17 23:47:20.638 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:20.638 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:20.638 -07 000000433 INF: FPGA: Recv ZSGSRD 30897 17-03-17 23:47:20.648 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:20.648 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:20.648 -07 000000561 INF: FPGA: Recv ZSGSRD 30897 17-03-17 23:47:20.658 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:20.658 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:20.658 -07 000000547 INF: FPGA: Recv ZSGSRD 30892 17-03-17 23:47:20.668 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:20.668 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:20.668 -07 000000433 INF: FPGA: Recv ZSGSRD 30895 17-03-17 23:47:20.678 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:20.678 -07 000000486 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:47:20.678 -07 000000480 INF: FPGA: Recv ZPIEZORD 26613 17-03-17 23:47:20.688 -07 000000486 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:20.688 -07 000000486 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.3 V, since DAC is at 4.627 V. Piezo Error = -9.4 V. 17-03-17 23:47:20.688 -07 000000486 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.8 um, Read 10 ADC samples: Avg = 30895 (-138.0 uncal um), Error = 0.8 uncal um, Median = 30896 (-138.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 30889 (-138.0 uncal um), Max = 30900 (-138.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um) 17-03-17 23:47:20.688 -07 000000486 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30895, posNoise = 5, negNoise = 6 17-03-17 23:47:20.688 -07 000000486 INF: Z Motor: After move to -0.138796, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:47:20.688 -07 000000486 INF: Z Motor: Settle wait time = 1588 ms, measure time = 109 ms (allowed 150 ms), total time = 1697 ms 17-03-17 23:47:20.688 -07 000000486 INF: Z Motor: Waiting extra 41 ms after reading position to reach expected total of 150 ms 17-03-17 23:47:20.738 -07 000000486 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1867 ms 17-03-17 23:47:20.738 -07 000000486 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 23:47:20.738 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:47:20.738 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:47:20.738 -07 000000486 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:47:20.738 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:47:20.738 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 23:47:20.738 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:47:20.738 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:47:20.738 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 23:47:20.748 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-17 23:47:20.748 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 23:47:20.758 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms. 17-03-17 23:47:20.758 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms. 17-03-17 23:47:20.758 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:47:20.808 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 23:47:21.108 -07 000000486 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-17 23:47:21.108 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-17 23:47:21.108 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 23:47:21.108 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start. 17-03-17 23:47:21.138 -07 000000561 INF: FPGA: Recv @CAMSNAP 380 17-03-17 23:47:21.148 -07 000000482 INF: FPGA: Recv CAMSNAP 17-03-17 23:47:21.148 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall 17-03-17 23:47:21.228 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms. 17-03-17 23:47:21.228 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:47:21.238 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-17 23:47:21.238 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms. 17-03-17 23:47:21.248 -07 000000561 INF: Autofocus start 17-03-17 23:47:21.248 -07 000000561 INF: MeasureProfile start 17-03-17 23:47:21.248 -07 000000576 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:47:21.248 -07 000000547 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:47:21.258 -07 000000576 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 23:47:21.258 -07 000000576 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 23:47:21.258 -07 000000561 INF: MeasureProfile done 17-03-17 23:47:21.258 -07 000000561 INF: X=0 Z correction [um]=-0.02394831 17-03-17 23:47:21.258 -07 000000561 INF: Autofocus finished 17-03-17 23:47:21.458 -07 000000512 INF: FPGA: Recv FOCMRRIMG 17-03-17 23:47:21.458 -07 000000576 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 204 ms overall 17-03-17 23:47:21.458 -07 000000610 INF: ------------ Scan Snapping tile 2 at Y-position 60.73291015625, Z-position -0.13879938613084. ---------- 17-03-17 23:47:21.458 -07 000000610 INF: Cycle 78 Tile 2 Exposure Settings A 1037 G 500 T 500 C 1037 17-03-17 23:47:21.468 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28827, sync = True, waitForSettling = True) 17-03-17 23:47:21.468 -07 000000610 INF: Z Motor: Moving to -0.131962 mm, started at -0.138799 mm, distance = 6.84 um 17-03-17 23:47:21.468 -07 000000610 INF: FPGA: Xmit ZDACW 28827\n [Z Motor] 17-03-17 23:47:21.468 -07 000000482 INF: FPGA: Recv ZDACW 17-03-17 23:47:21.478 -07 000000610 INF: FPGA: 'ZDACW 28827' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:47:21.488 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:47:21.488 -07 000000433 INF: FPGA: Recv ZDACR 28827 17-03-17 23:47:21.498 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-17 23:47:21.498 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:47:21.648 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:21.648 -07 000000547 INF: FPGA: Recv ZSGSRD 29826 17-03-17 23:47:21.658 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:47:21.658 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:21.658 -07 000000480 INF: FPGA: Recv ZSGSRD 29831 17-03-17 23:47:21.668 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:21.668 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:21.668 -07 000000482 INF: FPGA: Recv ZSGSRD 29827 17-03-17 23:47:21.678 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:21.678 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:21.678 -07 000000480 INF: FPGA: Recv ZSGSRD 29832 17-03-17 23:47:21.688 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:21.688 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:21.688 -07 000000576 INF: FPGA: Recv ZSGSRD 29836 17-03-17 23:47:21.698 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:21.698 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:21.698 -07 000000486 INF: FPGA: Recv ZSGSRD 29831 17-03-17 23:47:21.708 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:21.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:21.708 -07 000000482 INF: FPGA: Recv ZSGSRD 29835 17-03-17 23:47:21.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:21.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:21.718 -07 000000547 INF: FPGA: Recv ZSGSRD 29831 17-03-17 23:47:21.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:21.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:21.728 -07 000000486 INF: FPGA: Recv ZSGSRD 29826 17-03-17 23:47:21.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:21.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:21.738 -07 000000547 INF: FPGA: Recv ZSGSRD 29834 17-03-17 23:47:21.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:21.748 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:47:21.748 -07 000000433 INF: FPGA: Recv ZPIEZORD 25230 17-03-17 23:47:21.758 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:21.758 -07 000000610 INF: Z Motor: Piezo is near 33.9 V (nominally 0 to 100 V), expect near 44.0 V, since DAC is at 4.399 V. Piezo Error = -10.1 V. 17-03-17 23:47:21.758 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -132.0 um, Read 10 ADC samples: Avg = 29831 (-131.2 uncal um), Error = 0.8 uncal um, Median = 29831 (-131.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29826 (-131.1 uncal um), Max = 29836 (-131.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-17 23:47:21.758 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29831, posNoise = 5, negNoise = 5 17-03-17 23:47:21.758 -07 000000610 INF: Z Motor: After move to -0.131962, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:47:21.758 -07 000000610 INF: Z Motor: MoveAbsStepped took 289 ms) 17-03-17 23:47:21.758 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:47:21.758 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:47:21.758 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:47:21.758 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 23:47:21.758 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:47:21.758 -07 000000480 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:47:21.758 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 23:47:21.758 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 23:47:21.758 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:47:21.758 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 23:47:21.758 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-17 23:47:21.758 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 23:47:21.758 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-17 23:47:21.758 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 23:47:21.768 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-17 23:47:21.768 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 23:47:21.778 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms. 17-03-17 23:47:21.778 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms. 17-03-17 23:47:21.778 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms. 17-03-17 23:47:21.778 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms. 17-03-17 23:47:21.778 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 29004 150\n [Camera] 17-03-17 23:47:21.978 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 23:47:22.098 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:47:22.098 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 77. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1270, R2=1321, Total=2591. Warn if over 250 bubbles per interval. 17-03-17 23:47:23.018 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229 17-03-17 23:47:23.018 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229 17-03-17 23:47:23.018 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:47:23.018 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229 17-03-17 23:47:23.018 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229 17-03-17 23:47:23.018 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:47:23.028 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:47:23.028 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start. 17-03-17 23:47:23.028 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:47:23.028 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start. 17-03-17 23:47:23.208 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 29004 1422 17-03-17 23:47:23.358 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1573 17-03-17 23:47:23.418 -07 000000486 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 397 ms. 17-03-17 23:47:23.418 -07 000000486 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms. 17-03-17 23:47:23.418 -07 000000486 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:47:23.428 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 397 ms. 17-03-17 23:47:23.428 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 398 ms. 17-03-17 23:47:23.428 -07 000000480 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:47:23.428 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:47:23.428 -07 000000486 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms. 17-03-17 23:47:23.428 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:47:23.438 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 413 ms. 17-03-17 23:47:23.858 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072 17-03-17 23:47:23.858 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072 17-03-17 23:47:23.858 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:47:23.858 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:47:23.858 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) start. 17-03-17 23:47:23.868 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072 17-03-17 23:47:23.868 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072 17-03-17 23:47:23.868 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:47:23.868 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:47:23.868 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) start. 17-03-17 23:47:24.048 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP 2265 17-03-17 23:47:24.048 -07 000000486 INF: FPGA: Recv CAMDBLSNAP 17-03-17 23:47:24.058 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 29004 150' command took 2 ms to send, 2259 ms to get response, and 2272 ms overall 17-03-17 23:47:24.058 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-17 23:47:24.058 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 3 at Y-position 60.73291015625, Z-Position -0.131964024412006. ------ 17-03-17 23:47:24.058 -07 000000486 INF: Y Motor: MoveYZ optimized starting. Moving Y to 61.5726 mm, moving Z to -0.13873 mm 17-03-17 23:47:24.058 -07 000000486 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 23:47:24.058 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:47:24.058 -07 000000547 INF: Y Motor: Entering MoveAbsStepped (target = 98516 steps, sync = True, waitForSettling = True) 17-03-17 23:47:24.058 -07 000000547 INF: Y Motor: Moving to 61.5726 mm, started at 60.7329 mm, delta = 0.8397 mm 17-03-17 23:47:24.068 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:47:24.268 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) end. Duration was 401 ms. 17-03-17 23:47:24.268 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms. 17-03-17 23:47:24.268 -07 000000480 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:47:24.268 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) end. Duration was 399 ms. 17-03-17 23:47:24.268 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms. 17-03-17 23:47:24.268 -07 000000561 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:47:24.268 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:47:24.268 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms. 17-03-17 23:47:24.268 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms. 17-03-17 23:47:24.278 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms. 17-03-17 23:47:24.288 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 30306, sync = True, waitForSettling = False) 17-03-17 23:47:24.288 -07 000000480 INF: Z Motor: Moving to -0.138732 mm, started at -0.131964 mm, distance = -6.77 um 17-03-17 23:47:24.288 -07 000000480 INF: FPGA: Xmit ZDACW 30306\n [Z Motor] 17-03-17 23:47:24.288 -07 000000502 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:47:24.288 -07 000000502 INF: FPGA: Recv YRDPOS 124382 17-03-17 23:47:24.288 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 223 ms to get response, and 225 ms overall 17-03-17 23:47:24.288 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 213 ms to get response, and 223 ms overall 17-03-17 23:47:24.288 -07 000000547 INF: Y Motor: Encoder = 124382 = motor step 97173.4 = 60.7334 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:47:24.288 -07 000000459 INF: FPGA: Recv ZDACW 17-03-17 23:47:24.298 -07 000000480 INF: FPGA: 'ZDACW 30306' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:47:24.298 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:47:24.298 -07 000000547 INF: Y Motor: Last commanded position = 60.7426 mm (97188.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 23:47:24.298 -07 000000547 INF: Y Motor: Moving 1343 steps-20 17-03-17 23:47:24.298 -07 000000502 INF: FPGA: Recv ZDACR 30306 17-03-17 23:47:24.308 -07 000000433 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 23:47:24.308 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:24.308 -07 000000480 INF: Z Motor: MoveAbsStepped took 18 ms (did NOT wait for settling yet)) 17-03-17 23:47:24.318 -07 000000547 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 23:47:24.508 -07 000000561 INF: FPGA: Recv FOCMRRFOC 17-03-17 23:47:24.508 -07 000000433 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 218 ms overall 17-03-17 23:47:24.688 -07 000000438 INF: FPGA: Recv YMVTILE 17-03-17 23:47:24.688 -07 000000547 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 396 ms overall 17-03-17 23:47:24.738 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:47:24.738 -07 000000561 INF: FPGA: Recv YRDPOS 126083 17-03-17 23:47:24.748 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:24.748 -07 000000547 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:47:24.748 -07 000000547 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm) 17-03-17 23:47:24.748 -07 000000547 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.840 mm, average velocity = 2.115 mm/sec 17-03-17 23:47:25.218 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 78, FrontChillerTemperature: 3.960826, 17-03-17 23:47:25.698 -07 000000547 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:47:25.698 -07 000000475 INF: FPGA: Recv YRDPOS 126083 17-03-17 23:47:25.708 -07 000000547 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:47:25.708 -07 000000547 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:47:25.728 -07 000000547 INF: Y Motor: After move to 61.572609, error = -0.008644, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 23:47:25.728 -07 000000547 INF: Y Motor: Position error after settling (table move) = -18 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm) 17-03-17 23:47:25.728 -07 000000547 INF: Y Motor: Moved to 61.5640 after 1667 ms (table move) 17-03-17 23:47:25.738 -07 000000486 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138732 mm (DAC = 30306) 17-03-17 23:47:25.738 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:25.738 -07 000000409 INF: FPGA: Recv ZSGSRD 30884 17-03-17 23:47:25.748 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:47:25.748 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:25.748 -07 000000433 INF: FPGA: Recv ZSGSRD 30888 17-03-17 23:47:25.758 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:25.758 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:25.758 -07 000000433 INF: FPGA: Recv ZSGSRD 30873 17-03-17 23:47:25.768 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:25.768 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:25.768 -07 000000547 INF: FPGA: Recv ZSGSRD 30884 17-03-17 23:47:25.778 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:25.778 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:25.778 -07 000000415 INF: FPGA: Recv ZSGSRD 30889 17-03-17 23:47:25.788 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:25.788 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:25.788 -07 000000438 INF: FPGA: Recv ZSGSRD 30888 17-03-17 23:47:25.798 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:25.798 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:25.798 -07 000000547 INF: FPGA: Recv ZSGSRD 30879 17-03-17 23:47:25.808 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:25.808 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:25.808 -07 000000459 INF: FPGA: Recv ZSGSRD 30879 17-03-17 23:47:25.818 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:25.818 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:25.818 -07 000000480 INF: FPGA: Recv ZSGSRD 30888 17-03-17 23:47:25.828 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:25.828 -07 000000486 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:25.828 -07 000000480 INF: FPGA: Recv ZSGSRD 30887 17-03-17 23:47:25.838 -07 000000486 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:25.838 -07 000000486 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:47:25.838 -07 000000480 INF: FPGA: Recv ZPIEZORD 26637 17-03-17 23:47:25.848 -07 000000486 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:25.848 -07 000000486 INF: Z Motor: Piezo is near 36.9 V (nominally 0 to 100 V), expect near 46.2 V, since DAC is at 4.624 V. Piezo Error = -9.3 V. 17-03-17 23:47:25.848 -07 000000486 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.7 um, Read 10 ADC samples: Avg = 30884 (-137.9 uncal um), Error = 0.8 uncal um, Median = 30886 (-137.9 uncal um), StdDev = 5 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30873 (-137.9 uncal um), Max = 30889 (-138.0 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 11 (0.1 uncal um) 17-03-17 23:47:25.848 -07 000000486 INF: Z Motor: ADC noise = 11, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30884, posNoise = 5, negNoise = 11 17-03-17 23:47:25.848 -07 000000486 INF: Z Motor: After move to -0.138732, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:47:25.848 -07 000000486 INF: Z Motor: Settle wait time = 1449 ms, measure time = 110 ms (allowed 150 ms), total time = 1559 ms 17-03-17 23:47:25.848 -07 000000486 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms 17-03-17 23:47:25.888 -07 000000486 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1822 ms 17-03-17 23:47:25.888 -07 000000486 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 23:47:25.888 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:47:25.888 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:47:25.888 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:47:25.888 -07 000000415 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:47:25.888 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 23:47:25.888 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:47:25.888 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:47:25.888 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 23:47:25.898 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-17 23:47:25.898 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 23:47:25.908 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms. 17-03-17 23:47:25.908 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms. 17-03-17 23:47:25.908 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:47:25.948 -07 000000486 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 23:47:26.248 -07 000000459 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-17 23:47:26.248 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-17 23:47:26.248 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 23:47:26.258 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 615841328, 0x0, 559484976) start. 17-03-17 23:47:26.288 -07 000000433 INF: FPGA: Recv @CAMSNAP 380 17-03-17 23:47:26.288 -07 000000541 INF: FPGA: Recv CAMSNAP 17-03-17 23:47:26.288 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 378 ms to get response, and 384 ms overall 17-03-17 23:47:26.378 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 615841328, 0x0, 559484976) end. Duration was 126 ms. 17-03-17 23:47:26.378 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:47:26.378 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-17 23:47:26.378 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms. 17-03-17 23:47:26.488 -07 000000475 INF: Autofocus start 17-03-17 23:47:26.488 -07 000000475 INF: MeasureProfile start 17-03-17 23:47:26.488 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:47:26.488 -07 000000459 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:47:26.498 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-17 23:47:26.498 -07 000000415 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 23:47:26.498 -07 000000475 INF: MeasureProfile done 17-03-17 23:47:26.498 -07 000000475 INF: X=-16 Z correction [um]=-0.08128808 17-03-17 23:47:26.498 -07 000000475 INF: Autofocus finished 17-03-17 23:47:26.698 -07 000000502 INF: FPGA: Recv FOCMRRIMG 17-03-17 23:47:26.698 -07 000000415 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 23:47:26.698 -07 000000610 INF: ------------ Scan Snapping tile 3 at Y-position 61.56396484375, Z-position -0.13872871979728. ---------- 17-03-17 23:47:26.698 -07 000000610 INF: Cycle 78 Tile 3 Exposure Settings A 1037 G 500 T 500 C 1037 17-03-17 23:47:26.708 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28801, sync = True, waitForSettling = True) 17-03-17 23:47:26.708 -07 000000610 INF: Z Motor: Moving to -0.131843 mm, started at -0.138729 mm, distance = 6.89 um 17-03-17 23:47:26.708 -07 000000610 INF: FPGA: Xmit ZDACW 28801\n [Z Motor] 17-03-17 23:47:26.708 -07 000000541 INF: FPGA: Recv ZDACW 17-03-17 23:47:26.718 -07 000000610 INF: FPGA: 'ZDACW 28801' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:47:26.718 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:47:26.718 -07 000000475 INF: FPGA: Recv ZDACR 28801 17-03-17 23:47:26.728 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:26.728 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:47:26.878 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:26.878 -07 000000480 INF: FPGA: Recv ZSGSRD 29808 17-03-17 23:47:26.888 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:47:26.888 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:26.888 -07 000000486 INF: FPGA: Recv ZSGSRD 29809 17-03-17 23:47:26.898 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:26.898 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:26.898 -07 000000486 INF: FPGA: Recv ZSGSRD 29813 17-03-17 23:47:26.908 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:26.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:26.908 -07 000000475 INF: FPGA: Recv ZSGSRD 29815 17-03-17 23:47:26.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:26.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:26.918 -07 000000409 INF: FPGA: Recv ZSGSRD 29816 17-03-17 23:47:26.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:26.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:26.928 -07 000000486 INF: FPGA: Recv ZSGSRD 29808 17-03-17 23:47:26.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:26.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:26.938 -07 000000475 INF: FPGA: Recv ZSGSRD 29815 17-03-17 23:47:26.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:26.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:26.948 -07 000000561 INF: FPGA: Recv ZSGSRD 29814 17-03-17 23:47:26.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:26.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:26.958 -07 000000409 INF: FPGA: Recv ZSGSRD 29810 17-03-17 23:47:26.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:26.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:26.968 -07 000000480 INF: FPGA: Recv ZSGSRD 29807 17-03-17 23:47:26.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:26.978 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:47:26.978 -07 000000480 INF: FPGA: Recv ZPIEZORD 25258 17-03-17 23:47:26.988 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:26.988 -07 000000610 INF: Z Motor: Piezo is near 34.0 V (nominally 0 to 100 V), expect near 43.9 V, since DAC is at 4.395 V. Piezo Error = -10.0 V. 17-03-17 23:47:26.988 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.8 um, Read 10 ADC samples: Avg = 29812 (-131.1 uncal um), Error = 0.8 uncal um, Median = 29812 (-131.1 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 29807 (-131.0 uncal um), Max = 29816 (-131.1 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-17 23:47:26.988 -07 000000610 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29812, posNoise = 4, negNoise = 5 17-03-17 23:47:26.988 -07 000000610 INF: Z Motor: After move to -0.131843, error = 0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:47:26.988 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms) 17-03-17 23:47:26.988 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:47:26.988 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:47:26.988 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:47:26.988 -07 000000409 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:47:26.988 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 23:47:26.988 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:47:26.988 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 23:47:26.988 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 23:47:26.988 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:47:26.988 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 23:47:26.988 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-17 23:47:26.988 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 23:47:26.998 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms. 17-03-17 23:47:26.998 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-17 23:47:26.998 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 23:47:26.998 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 23:47:27.008 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms. 17-03-17 23:47:27.008 -07 000000561 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms. 17-03-17 23:47:27.008 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms. 17-03-17 23:47:27.008 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms. 17-03-17 23:47:27.018 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 28977 150\n [Camera] 17-03-17 23:47:27.098 -07 000000561 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:47:27.098 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 77. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1270, R2=1321, Total=2591. Warn if over 250 bubbles per interval. 17-03-17 23:47:27.218 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 23:47:28.248 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229 17-03-17 23:47:28.248 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229 17-03-17 23:47:28.248 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:47:28.248 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:47:28.248 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start. 17-03-17 23:47:28.258 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229 17-03-17 23:47:28.258 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229 17-03-17 23:47:28.258 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:47:28.258 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:47:28.258 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start. 17-03-17 23:47:28.448 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28977 1422 17-03-17 23:47:28.588 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572 17-03-17 23:47:28.648 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 399 ms. 17-03-17 23:47:28.648 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms. 17-03-17 23:47:28.648 -07 000000409 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:47:28.658 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 399 ms. 17-03-17 23:47:28.658 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms. 17-03-17 23:47:28.658 -07 000000486 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:47:28.658 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:47:28.658 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms. 17-03-17 23:47:28.658 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:47:28.668 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms. 17-03-17 23:47:29.098 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072 17-03-17 23:47:29.098 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072 17-03-17 23:47:29.098 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:47:29.098 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:47:29.098 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start. 17-03-17 23:47:29.098 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072 17-03-17 23:47:29.098 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072 17-03-17 23:47:29.098 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:47:29.098 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:47:29.098 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start. 17-03-17 23:47:29.288 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP 2264 17-03-17 23:47:29.288 -07 000000618 INF: FPGA: Recv CAMDBLSNAP 17-03-17 23:47:29.288 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 28977 150' command took 2 ms to send, 2262 ms to get response, and 2272 ms overall 17-03-17 23:47:29.288 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-17 23:47:29.288 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 4 at Y-position 61.56396484375, Z-Position -0.131841964381313. ------ 17-03-17 23:47:29.288 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 62.4026 mm, moving Z to -0.13829 mm 17-03-17 23:47:29.288 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 23:47:29.288 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:47:29.418 -07 000000382 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:47:29.418 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 125 ms overall 17-03-17 23:47:29.418 -07 000000475 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 23:47:29.418 -07 000000561 INF: Y Motor: Entering MoveAbsStepped (target = 99844 steps, sync = True, waitForSettling = True) 17-03-17 23:47:29.418 -07 000000561 INF: Y Motor: Moving to 62.4026 mm, started at 61.5640 mm, delta = 0.8386 mm 17-03-17 23:47:29.418 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 30210, sync = True, waitForSettling = False) 17-03-17 23:47:29.418 -07 000000486 INF: Z Motor: Moving to -0.138293 mm, started at -0.131842 mm, distance = -6.45 um 17-03-17 23:47:29.428 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:47:29.428 -07 000000627 INF: FPGA: Recv YRDPOS 126083 17-03-17 23:47:29.438 -07 000000486 INF: FPGA: Xmit ZDACW 30210\n [Z Motor] 17-03-17 23:47:29.438 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 16 ms overall 17-03-17 23:47:29.438 -07 000000561 INF: Y Motor: Encoder = 126083 = motor step 98502.3 = 61.5640 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:47:29.438 -07 000000561 INF: Y Motor: Last commanded position = 61.5726 mm (98516.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 23:47:29.438 -07 000000561 INF: Y Motor: Moving 1342 steps-18 17-03-17 23:47:29.438 -07 000000627 INF: FPGA: Recv ZDACW 17-03-17 23:47:29.448 -07 000000486 INF: FPGA: 'ZDACW 30210' command took 0 ms to send, 0 ms to get response, and 25 ms overall 17-03-17 23:47:29.448 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:47:29.448 -07 000000512 INF: FPGA: Recv ZDACR 30210 17-03-17 23:47:29.458 -07 000000486 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:29.458 -07 000000561 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 23:47:29.458 -07 000000486 INF: Z Motor: MoveAbsStepped took 36 ms (did NOT wait for settling yet)) 17-03-17 23:47:29.488 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 396 ms. 17-03-17 23:47:29.488 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms. 17-03-17 23:47:29.488 -07 000000480 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:47:29.498 -07 000000409 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 397 ms. 17-03-17 23:47:29.498 -07 000000409 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms. 17-03-17 23:47:29.498 -07 000000409 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:47:29.498 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:47:29.498 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms. 17-03-17 23:47:29.498 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms. 17-03-17 23:47:29.508 -07 000000409 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 408 ms. 17-03-17 23:47:29.618 -07 000000480 INF: FPGA: Recv FOCMRRFOC 17-03-17 23:47:29.618 -07 000000475 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 196 ms to get response, and 202 ms overall 17-03-17 23:47:29.838 -07 000000448 INF: FPGA: Recv YMVTILE 17-03-17 23:47:29.838 -07 000000561 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 400 ms overall 17-03-17 23:47:29.878 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:47:29.878 -07 000000486 INF: FPGA: Recv YRDPOS 127786 17-03-17 23:47:29.888 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 23:47:29.888 -07 000000561 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:47:29.888 -07 000000561 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm) 17-03-17 23:47:29.888 -07 000000561 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 401 ms, distance = 0.839 mm, average velocity = 2.091 mm/sec 17-03-17 23:47:30.578 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 78, FrontChillerTemperature: 3.954032, 17-03-17 23:47:30.838 -07 000000561 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:47:30.838 -07 000000576 INF: FPGA: Recv YRDPOS 127786 17-03-17 23:47:30.848 -07 000000561 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:47:30.848 -07 000000561 INF: Y Motor: Encoder = 127786 = motor step 99832.8 = 62.3955 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:47:30.868 -07 000000561 INF: Y Motor: After move to 62.402607, error = -0.007099, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 23:47:30.868 -07 000000561 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm) 17-03-17 23:47:30.868 -07 000000561 INF: Y Motor: Moved to 62.3955 after 1452 ms (table move) 17-03-17 23:47:30.868 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138293 mm (DAC = 30210) 17-03-17 23:47:30.868 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:30.878 -07 000000561 INF: FPGA: Recv ZSGSRD 30818 17-03-17 23:47:30.878 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall 17-03-17 23:47:30.878 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:30.878 -07 000000561 INF: FPGA: Recv ZSGSRD 30824 17-03-17 23:47:30.888 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:47:30.888 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:30.888 -07 000000475 INF: FPGA: Recv ZSGSRD 30811 17-03-17 23:47:30.898 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:30.898 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:30.898 -07 000000512 INF: FPGA: Recv ZSGSRD 30813 17-03-17 23:47:30.908 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:30.908 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:30.908 -07 000000512 INF: FPGA: Recv ZSGSRD 30824 17-03-17 23:47:30.918 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:30.918 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:30.918 -07 000000475 INF: FPGA: Recv ZSGSRD 30822 17-03-17 23:47:30.928 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:30.928 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:30.928 -07 000000475 INF: FPGA: Recv ZSGSRD 30820 17-03-17 23:47:30.938 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:30.938 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:30.938 -07 000000475 INF: FPGA: Recv ZSGSRD 30821 17-03-17 23:47:30.948 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:30.948 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:30.948 -07 000000475 INF: FPGA: Recv ZSGSRD 30817 17-03-17 23:47:30.958 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:30.958 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:30.958 -07 000000409 INF: FPGA: Recv ZSGSRD 30810 17-03-17 23:47:30.968 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:30.968 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:47:30.968 -07 000000448 INF: FPGA: Recv ZPIEZORD 26592 17-03-17 23:47:30.978 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:30.978 -07 000000618 INF: Z Motor: Piezo is near 36.8 V (nominally 0 to 100 V), expect near 46.1 V, since DAC is at 4.610 V. Piezo Error = -9.3 V. 17-03-17 23:47:30.978 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.3 um, Read 10 ADC samples: Avg = 30818 (-137.5 uncal um), Error = 0.8 uncal um, Median = 30819 (-137.5 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30810 (-137.5 uncal um), Max = 30824 (-137.5 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um) 17-03-17 23:47:30.978 -07 000000618 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30818, posNoise = 6, negNoise = 8 17-03-17 23:47:30.978 -07 000000618 INF: Z Motor: After move to -0.138293, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:47:30.978 -07 000000618 INF: Z Motor: Settle wait time = 1454 ms, measure time = 102 ms (allowed 150 ms), total time = 1556 ms 17-03-17 23:47:30.978 -07 000000618 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms 17-03-17 23:47:31.028 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1732 ms 17-03-17 23:47:31.028 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 23:47:31.028 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:47:31.028 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:47:31.028 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:47:31.028 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 23:47:31.028 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:47:31.028 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:47:31.028 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:47:31.028 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 23:47:31.038 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-17 23:47:31.038 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 23:47:31.048 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms. 17-03-17 23:47:31.048 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms. 17-03-17 23:47:31.048 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:47:31.098 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 23:47:31.398 -07 000000623 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-17 23:47:31.398 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-17 23:47:31.398 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 23:47:31.398 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start. 17-03-17 23:47:31.438 -07 000000561 INF: FPGA: Recv @CAMSNAP 380 17-03-17 23:47:31.438 -07 000000576 INF: FPGA: Recv CAMSNAP 17-03-17 23:47:31.438 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall 17-03-17 23:47:31.528 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 127 ms. 17-03-17 23:47:31.528 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:47:31.528 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-17 23:47:31.528 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms. 17-03-17 23:47:31.538 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:47:31.538 -07 000000512 INF: Autofocus start 17-03-17 23:47:31.538 -07 000000512 INF: MeasureProfile start 17-03-17 23:47:31.538 -07 000000448 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:47:31.548 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 23:47:31.548 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 23:47:31.548 -07 000000512 INF: MeasureProfile done 17-03-17 23:47:31.548 -07 000000512 INF: X=0 Z correction [um]=-0.02394831 17-03-17 23:47:31.548 -07 000000512 INF: Autofocus finished 17-03-17 23:47:31.748 -07 000000618 INF: FPGA: Recv FOCMRRIMG 17-03-17 23:47:31.748 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 23:47:31.748 -07 000000610 INF: ------------ Scan Snapping tile 4 at Y-position 62.3955078125, Z-position -0.138304721795924. ---------- 17-03-17 23:47:31.748 -07 000000610 INF: Cycle 78 Tile 4 Exposure Settings A 1037 G 500 T 500 C 1037 17-03-17 23:47:31.758 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28718, sync = True, waitForSettling = True) 17-03-17 23:47:31.758 -07 000000610 INF: Z Motor: Moving to -0.131463 mm, started at -0.138305 mm, distance = 6.84 um 17-03-17 23:47:31.758 -07 000000610 INF: FPGA: Xmit ZDACW 28718\n [Z Motor] 17-03-17 23:47:31.758 -07 000000623 INF: FPGA: Recv ZDACW 17-03-17 23:47:31.768 -07 000000610 INF: FPGA: 'ZDACW 28718' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:31.768 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:47:31.768 -07 000000475 INF: FPGA: Recv ZDACR 28718 17-03-17 23:47:31.778 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:31.778 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:47:31.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:31.928 -07 000000512 INF: FPGA: Recv ZSGSRD 29754 17-03-17 23:47:31.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:47:31.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:31.938 -07 000000618 INF: FPGA: Recv ZSGSRD 29751 17-03-17 23:47:31.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:31.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:31.948 -07 000000623 INF: FPGA: Recv ZSGSRD 29752 17-03-17 23:47:31.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:31.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:31.958 -07 000000512 INF: FPGA: Recv ZSGSRD 29757 17-03-17 23:47:31.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:31.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:31.968 -07 000000512 INF: FPGA: Recv ZSGSRD 29756 17-03-17 23:47:31.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:31.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:31.978 -07 000000618 INF: FPGA: Recv ZSGSRD 29756 17-03-17 23:47:31.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:31.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:31.988 -07 000000512 INF: FPGA: Recv ZSGSRD 29755 17-03-17 23:47:31.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:31.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:31.998 -07 000000623 INF: FPGA: Recv ZSGSRD 29754 17-03-17 23:47:32.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:32.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:32.008 -07 000000623 INF: FPGA: Recv ZSGSRD 29755 17-03-17 23:47:32.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:32.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:32.018 -07 000000382 INF: FPGA: Recv ZSGSRD 29752 17-03-17 23:47:32.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:32.028 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:47:32.028 -07 000000382 INF: FPGA: Recv ZPIEZORD 25190 17-03-17 23:47:32.038 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:32.038 -07 000000610 INF: Z Motor: Piezo is near 33.8 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.382 V. Piezo Error = -10.0 V. 17-03-17 23:47:32.038 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.5 um, Read 10 ADC samples: Avg = 29754 (-130.7 uncal um), Error = 0.8 uncal um, Median = 29754 (-130.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29751 (-130.7 uncal um), Max = 29757 (-130.7 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um) 17-03-17 23:47:32.038 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29754, posNoise = 3, negNoise = 3 17-03-17 23:47:32.038 -07 000000610 INF: Z Motor: After move to -0.131463, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:47:32.038 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms) 17-03-17 23:47:32.038 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:47:32.038 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:47:32.038 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:47:32.038 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 23:47:32.038 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 23:47:32.038 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:47:32.038 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 23:47:32.038 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:47:32.038 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-17 23:47:32.038 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 23:47:32.038 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:47:32.038 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 23:47:32.038 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms. 17-03-17 23:47:32.038 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 23:47:32.048 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-17 23:47:32.048 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 23:47:32.058 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms. 17-03-17 23:47:32.058 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms. 17-03-17 23:47:32.058 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms. 17-03-17 23:47:32.058 -07 000000623 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms. 17-03-17 23:47:32.068 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 28894 150\n [Camera] 17-03-17 23:47:32.098 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:47:32.098 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 77. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1270, R2=1321, Total=2591. Warn if over 250 bubbles per interval. 17-03-17 23:47:32.268 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 23:47:33.308 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229 17-03-17 23:47:33.308 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229 17-03-17 23:47:33.308 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:47:33.308 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229 17-03-17 23:47:33.308 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229 17-03-17 23:47:33.308 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:47:33.308 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:47:33.308 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start. 17-03-17 23:47:33.308 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:47:33.308 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start. 17-03-17 23:47:33.498 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28894 1422 17-03-17 23:47:33.648 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572 17-03-17 23:47:33.708 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 392 ms. 17-03-17 23:47:33.708 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms. 17-03-17 23:47:33.708 -07 000000475 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:47:33.708 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 395 ms. 17-03-17 23:47:33.708 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms. 17-03-17 23:47:33.708 -07 000000618 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:47:33.708 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms. 17-03-17 23:47:33.708 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms. 17-03-17 23:47:33.708 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms. 17-03-17 23:47:33.718 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms. 17-03-17 23:47:34.148 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072 17-03-17 23:47:34.148 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072 17-03-17 23:47:34.148 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:47:34.148 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072 17-03-17 23:47:34.148 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072 17-03-17 23:47:34.148 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:47:34.158 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:47:34.158 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start. 17-03-17 23:47:34.158 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:47:34.158 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start. 17-03-17 23:47:34.338 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP 2265 17-03-17 23:47:34.338 -07 000000623 INF: FPGA: Recv CAMDBLSNAP 17-03-17 23:47:34.338 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 28894 150' command took 2 ms to send, 2264 ms to get response, and 2275 ms overall 17-03-17 23:47:34.458 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-17 23:47:34.458 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 5 at Y-position 62.3955078125, Z-Position -0.131469360077091. ------ 17-03-17 23:47:34.458 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:47:34.458 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 63.2326 mm, moving Z to -0.13814 mm 17-03-17 23:47:34.458 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 23:47:34.458 -07 000000623 INF: Z Motor: Entering MoveAbsStepped (DAC = 30176, sync = True, waitForSettling = False) 17-03-17 23:47:34.458 -07 000000623 INF: Z Motor: Moving to -0.138137 mm, started at -0.131469 mm, distance = -6.67 um 17-03-17 23:47:34.458 -07 000000438 INF: Y Motor: Entering MoveAbsStepped (target = 101172 steps, sync = True, waitForSettling = True) 17-03-17 23:47:34.458 -07 000000438 INF: Y Motor: Moving to 63.2326 mm, started at 62.3955 mm, delta = 0.8371 mm 17-03-17 23:47:34.468 -07 000000502 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:47:34.468 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-17 23:47:34.468 -07 000000623 INF: FPGA: Xmit ZDACW 30176\n [Z Motor] 17-03-17 23:47:34.468 -07 000000547 INF: FPGA: Recv ZDACW 17-03-17 23:47:34.478 -07 000000623 INF: FPGA: 'ZDACW 30176' command took 0 ms to send, 0 ms to get response, and 11 ms overall 17-03-17 23:47:34.478 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:47:34.478 -07 000000482 INF: FPGA: Recv YRDPOS 127787 17-03-17 23:47:34.488 -07 000000475 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 23:47:34.488 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 21 ms overall 17-03-17 23:47:34.488 -07 000000438 INF: Y Motor: Encoder = 127787 = motor step 99833.6 = 62.3960 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:47:34.488 -07 000000438 INF: Y Motor: Last commanded position = 62.4026 mm (99844.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 23:47:34.488 -07 000000438 INF: Y Motor: Moving 1339 steps-15 17-03-17 23:47:34.498 -07 000000623 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:47:34.498 -07 000000482 INF: FPGA: Recv ZDACR 30176 17-03-17 23:47:34.508 -07 000000623 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-17 23:47:34.508 -07 000000623 INF: Z Motor: MoveAbsStepped took 42 ms (did NOT wait for settling yet)) 17-03-17 23:47:34.508 -07 000000438 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 23:47:34.548 -07 000000512 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 394 ms. 17-03-17 23:47:34.548 -07 000000512 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms. 17-03-17 23:47:34.548 -07 000000512 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:47:34.548 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 392 ms. 17-03-17 23:47:34.548 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms. 17-03-17 23:47:34.548 -07 000000618 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:47:34.548 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:47:34.558 -07 000000512 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms. 17-03-17 23:47:34.558 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:47:34.558 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms. 17-03-17 23:47:34.688 -07 000000623 INF: FPGA: Recv FOCMRRFOC 17-03-17 23:47:34.688 -07 000000475 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall 17-03-17 23:47:34.878 -07 000000547 INF: FPGA: Recv YMVTILE 17-03-17 23:47:34.878 -07 000000438 INF: FPGA: 'YMVTILE 1327' command took 2 ms to send, 369 ms to get response, and 395 ms overall 17-03-17 23:47:34.928 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:47:34.928 -07 000000512 INF: FPGA: Recv YRDPOS 129483 17-03-17 23:47:34.938 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:34.938 -07 000000438 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:47:34.938 -07 000000438 INF: Y Motor: Position error before settling (table move) = -17 encoder counts (-0.008 mm) 17-03-17 23:47:34.938 -07 000000438 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 395 ms, distance = 0.837 mm, average velocity = 2.119 mm/sec 17-03-17 23:47:35.888 -07 000000438 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:47:35.888 -07 000000502 INF: FPGA: Recv YRDPOS 129483 17-03-17 23:47:35.898 -07 000000438 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:47:35.898 -07 000000438 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:47:35.918 -07 000000438 INF: Y Motor: After move to 63.232609, error = -0.008488, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 23:47:35.918 -07 000000438 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 0 counts (0.000 mm) 17-03-17 23:47:35.918 -07 000000438 INF: Y Motor: Moved to 63.2241 after 1459 ms (table move) 17-03-17 23:47:35.928 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.138137 mm (DAC = 30176) 17-03-17 23:47:35.938 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:35.938 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 78, FrontChillerTemperature: 4.012614, 17-03-17 23:47:35.938 -07 000000541 INF: FPGA: Recv ZSGSRD 30796 17-03-17 23:47:35.948 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 18 ms overall 17-03-17 23:47:35.968 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:35.968 -07 000000623 INF: FPGA: Recv ZSGSRD 30786 17-03-17 23:47:35.978 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-17 23:47:35.998 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:35.998 -07 000000623 INF: FPGA: Recv ZSGSRD 30791 17-03-17 23:47:36.008 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-17 23:47:36.008 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:36.008 -07 000000541 INF: FPGA: Recv ZSGSRD 30795 17-03-17 23:47:36.018 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:36.018 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:36.018 -07 000000482 INF: FPGA: Recv ZSGSRD 30800 17-03-17 23:47:36.028 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:36.028 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:36.028 -07 000000475 INF: FPGA: Recv ZSGSRD 30795 17-03-17 23:47:36.038 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:36.038 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:36.038 -07 000000459 INF: FPGA: Recv ZSGSRD 30799 17-03-17 23:47:36.048 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:36.048 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:36.048 -07 000000502 INF: FPGA: Recv ZSGSRD 30790 17-03-17 23:47:36.058 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:36.058 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:36.058 -07 000000459 INF: FPGA: Recv ZSGSRD 30788 17-03-17 23:47:36.068 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:36.068 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:36.068 -07 000000502 INF: FPGA: Recv ZSGSRD 30788 17-03-17 23:47:36.078 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:36.078 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:47:36.078 -07 000000618 INF: FPGA: Recv ZPIEZORD 26559 17-03-17 23:47:36.088 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:36.088 -07 000000382 INF: Z Motor: Piezo is near 36.7 V (nominally 0 to 100 V), expect near 46.0 V, since DAC is at 4.605 V. Piezo Error = -9.3 V. 17-03-17 23:47:36.088 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -138.1 um, Read 10 ADC samples: Avg = 30793 (-137.3 uncal um), Error = 0.8 uncal um, Median = 30793 (-137.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30786 (-137.3 uncal um), Max = 30800 (-137.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um) 17-03-17 23:47:36.088 -07 000000382 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30793, posNoise = 7, negNoise = 7 17-03-17 23:47:36.088 -07 000000382 INF: Z Motor: After move to -0.138137, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:47:36.088 -07 000000382 INF: Z Motor: Settle wait time = 1462 ms, measure time = 160 ms (allowed 150 ms), total time = 1622 ms 17-03-17 23:47:36.088 -07 000000382 INF: Z Motor: Warning: Actual position measuring time = 160 ms, longer than max expected time of 150 ms 17-03-17 23:47:36.088 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1625 ms 17-03-17 23:47:36.088 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 23:47:36.088 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:47:36.088 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:47:36.088 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:47:36.088 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:47:36.098 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 23:47:36.098 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:47:36.098 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-17 23:47:36.098 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 23:47:36.098 -07 000000547 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms. 17-03-17 23:47:36.098 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 23:47:36.108 -07 000000547 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms. 17-03-17 23:47:36.108 -07 000000547 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms. 17-03-17 23:47:36.108 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:47:36.158 -07 000000459 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 23:47:36.448 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-17 23:47:36.458 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-17 23:47:36.458 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 23:47:36.458 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start. 17-03-17 23:47:36.488 -07 000000618 INF: FPGA: Recv @CAMSNAP 380 17-03-17 23:47:36.498 -07 000000475 INF: FPGA: Recv CAMSNAP 17-03-17 23:47:36.498 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall 17-03-17 23:47:36.578 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 127 ms. 17-03-17 23:47:36.578 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:47:36.588 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-17 23:47:36.588 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 130 ms. 17-03-17 23:47:36.598 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:47:36.598 -07 000000547 INF: Autofocus start 17-03-17 23:47:36.598 -07 000000547 INF: MeasureProfile start 17-03-17 23:47:36.598 -07 000000415 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:47:36.608 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-17 23:47:36.608 -07 000000618 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 23:47:36.608 -07 000000547 INF: MeasureProfile done 17-03-17 23:47:36.608 -07 000000547 INF: X=8 Z correction [um]=0.01453479 17-03-17 23:47:36.608 -07 000000547 INF: Autofocus finished 17-03-17 23:47:36.808 -07 000000415 INF: FPGA: Recv FOCMRRIMG 17-03-17 23:47:36.808 -07 000000618 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 23:47:36.808 -07 000000610 INF: ------------ Scan Snapping tile 5 at Y-position 63.22412109375, Z-position -0.13814411649238. ---------- 17-03-17 23:47:36.808 -07 000000610 INF: Cycle 78 Tile 5 Exposure Settings A 1037 G 500 T 500 C 1037 17-03-17 23:47:36.818 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28692, sync = True, waitForSettling = True) 17-03-17 23:47:36.818 -07 000000610 INF: Z Motor: Moving to -0.131344 mm, started at -0.138144 mm, distance = 6.80 um 17-03-17 23:47:36.818 -07 000000610 INF: FPGA: Xmit ZDACW 28692\n [Z Motor] 17-03-17 23:47:36.818 -07 000000475 INF: FPGA: Recv ZDACW 17-03-17 23:47:36.828 -07 000000610 INF: FPGA: 'ZDACW 28692' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:47:36.828 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:47:36.828 -07 000000475 INF: FPGA: Recv ZDACR 28692 17-03-17 23:47:36.838 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:36.838 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:47:36.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:36.988 -07 000000475 INF: FPGA: Recv ZSGSRD 29738 17-03-17 23:47:36.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:47:36.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:36.998 -07 000000482 INF: FPGA: Recv ZSGSRD 29734 17-03-17 23:47:37.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:37.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:37.008 -07 000000475 INF: FPGA: Recv ZSGSRD 29733 17-03-17 23:47:37.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:37.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:37.018 -07 000000475 INF: FPGA: Recv ZSGSRD 29738 17-03-17 23:47:37.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:37.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:37.028 -07 000000618 INF: FPGA: Recv ZSGSRD 29732 17-03-17 23:47:37.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:37.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:37.038 -07 000000482 INF: FPGA: Recv ZSGSRD 29739 17-03-17 23:47:37.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:37.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:37.048 -07 000000547 INF: FPGA: Recv ZSGSRD 29734 17-03-17 23:47:37.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:37.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:37.058 -07 000000618 INF: FPGA: Recv ZSGSRD 29740 17-03-17 23:47:37.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:37.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:37.068 -07 000000482 INF: FPGA: Recv ZSGSRD 29736 17-03-17 23:47:37.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:37.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:37.078 -07 000000475 INF: FPGA: Recv ZSGSRD 29729 17-03-17 23:47:37.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:37.088 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:47:37.088 -07 000000618 INF: FPGA: Recv ZPIEZORD 25153 17-03-17 23:47:37.098 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:37.098 -07 000000610 INF: Z Motor: Piezo is near 33.7 V (nominally 0 to 100 V), expect near 43.8 V, since DAC is at 4.378 V. Piezo Error = -10.0 V. 17-03-17 23:47:37.098 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.3 um, Read 10 ADC samples: Avg = 29735 (-130.6 uncal um), Error = 0.8 uncal um, Median = 29735 (-130.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 11 (0.1 uncal um), Min = 29729 (-130.5 uncal um), Max = 29740 (-130.6 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um) 17-03-17 23:47:37.098 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29735, posNoise = 5, negNoise = 6 17-03-17 23:47:37.098 -07 000000610 INF: Z Motor: After move to -0.131344, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:47:37.098 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms) 17-03-17 23:47:37.098 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:47:37.098 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:47:37.098 -07 000000547 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:47:37.098 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 23:47:37.098 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:47:37.098 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:47:37.098 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:47:37.098 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 23:47:37.098 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 23:47:37.098 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 77. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1270, R2=1321, Total=2591. Warn if over 250 bubbles per interval. 17-03-17 23:47:37.098 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 3 ms. 17-03-17 23:47:37.098 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 23:47:37.098 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-17 23:47:37.098 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 23:47:37.108 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms. 17-03-17 23:47:37.108 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 23:47:37.108 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-17 23:47:37.108 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 23:47:37.118 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms. 17-03-17 23:47:37.118 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 22 ms. 17-03-17 23:47:37.118 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms. 17-03-17 23:47:37.118 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms. 17-03-17 23:47:37.118 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 28868 150\n [Camera] 17-03-17 23:47:37.318 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 23:47:38.358 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229 17-03-17 23:47:38.358 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229 17-03-17 23:47:38.358 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:47:38.368 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:47:38.368 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start. 17-03-17 23:47:38.368 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229 17-03-17 23:47:38.368 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229 17-03-17 23:47:38.368 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:47:38.368 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:47:38.368 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start. 17-03-17 23:47:38.548 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28868 1422 17-03-17 23:47:38.698 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572 17-03-17 23:47:38.758 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 397 ms. 17-03-17 23:47:38.758 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms. 17-03-17 23:47:38.768 -07 000000475 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:47:38.768 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 397 ms. 17-03-17 23:47:38.768 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 397 ms. 17-03-17 23:47:38.768 -07 000000618 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:47:38.768 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:47:38.768 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms. 17-03-17 23:47:38.768 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:47:38.778 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms. 17-03-17 23:47:39.198 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072 17-03-17 23:47:39.198 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072 17-03-17 23:47:39.208 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:47:39.208 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:47:39.208 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) start. 17-03-17 23:47:39.208 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072 17-03-17 23:47:39.208 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072 17-03-17 23:47:39.208 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:47:39.208 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:47:39.208 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start. 17-03-17 23:47:39.398 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP 2265 17-03-17 23:47:39.398 -07 000000448 INF: FPGA: Recv CAMDBLSNAP 17-03-17 23:47:39.398 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 28868 150' command took 2 ms to send, 2261 ms to get response, and 2272 ms overall 17-03-17 23:47:39.398 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-17 23:47:39.398 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 6 at Y-position 63.22412109375, Z-Position -0.131347300046397. ------ 17-03-17 23:47:39.398 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:47:39.398 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.0626 mm, moving Z to -0.13781 mm 17-03-17 23:47:39.398 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 23:47:39.408 -07 000000627 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:47:39.408 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-17 23:47:39.408 -07 000000448 INF: Y Motor: Entering MoveAbsStepped (target = 102500 steps, sync = True, waitForSettling = True) 17-03-17 23:47:39.408 -07 000000448 INF: Y Motor: Moving to 64.0626 mm, started at 63.2241 mm, delta = 0.8385 mm 17-03-17 23:47:39.408 -07 000000475 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 23:47:39.408 -07 000000547 INF: Z Motor: Entering MoveAbsStepped (DAC = 30105, sync = True, waitForSettling = False) 17-03-17 23:47:39.408 -07 000000547 INF: Z Motor: Moving to -0.137812 mm, started at -0.131347 mm, distance = -6.46 um 17-03-17 23:47:39.418 -07 000000547 INF: FPGA: Xmit ZDACW 30105\n [Z Motor] 17-03-17 23:47:39.418 -07 000000576 INF: FPGA: Recv ZDACW 17-03-17 23:47:39.428 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:47:39.428 -07 000000547 INF: FPGA: 'ZDACW 30105' command took 0 ms to send, 0 ms to get response, and 17 ms overall 17-03-17 23:47:39.428 -07 000000480 INF: FPGA: Recv YRDPOS 129483 17-03-17 23:47:39.438 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-17 23:47:39.438 -07 000000448 INF: Y Motor: Encoder = 129483 = motor step 101158.6 = 63.2241 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:47:39.438 -07 000000448 INF: Y Motor: Last commanded position = 63.2326 mm (101172.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 23:47:39.438 -07 000000448 INF: Y Motor: Moving 1342 steps-17 17-03-17 23:47:39.438 -07 000000547 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:47:39.438 -07 000000433 INF: FPGA: Recv ZDACR 30105 17-03-17 23:47:39.448 -07 000000547 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 19 ms overall 17-03-17 23:47:39.448 -07 000000547 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet)) 17-03-17 23:47:39.448 -07 000000448 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 23:47:39.598 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 389 ms. 17-03-17 23:47:39.598 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 389 ms. 17-03-17 23:47:39.598 -07 000000561 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:47:39.598 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:47:39.598 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) end. Duration was 396 ms. 17-03-17 23:47:39.598 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 396 ms. 17-03-17 23:47:39.598 -07 000000482 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:47:39.608 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 400 ms. 17-03-17 23:47:39.608 -07 000000576 INF: FPGA: Recv FOCMRRFOC 17-03-17 23:47:39.608 -07 000000475 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 23:47:39.608 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms. 17-03-17 23:47:39.608 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms. 17-03-17 23:47:39.818 -07 000000433 INF: FPGA: Recv YMVTILE 17-03-17 23:47:39.818 -07 000000448 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall 17-03-17 23:47:39.868 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:47:39.868 -07 000000475 INF: FPGA: Recv YRDPOS 131189 17-03-17 23:47:39.878 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:39.878 -07 000000448 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:47:39.878 -07 000000448 INF: Y Motor: Position error before settling (table move) = -11 encoder counts (-0.005 mm) 17-03-17 23:47:39.878 -07 000000448 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 388 ms, distance = 0.838 mm, average velocity = 2.161 mm/sec 17-03-17 23:47:40.828 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:47:40.828 -07 000000415 INF: FPGA: Recv YRDPOS 131189 17-03-17 23:47:40.838 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:40.838 -07 000000448 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:47:40.858 -07 000000448 INF: Y Motor: After move to 64.062607, error = -0.005478, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 23:47:40.858 -07 000000448 INF: Y Motor: Position error after settling (table move) = -11 encoder counts (-0.005 mm), Delta during settling = 0 counts (0.000 mm) 17-03-17 23:47:40.858 -07 000000448 INF: Y Motor: Moved to 64.0571 after 1452 ms (table move) 17-03-17 23:47:40.858 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137812 mm (DAC = 30105) 17-03-17 23:47:40.858 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:40.868 -07 000000576 INF: FPGA: Recv ZSGSRD 30740 17-03-17 23:47:40.868 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 4 ms to get response, and 8 ms overall 17-03-17 23:47:40.868 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:40.878 -07 000000415 INF: FPGA: Recv ZSGSRD 30735 17-03-17 23:47:40.878 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 23:47:40.878 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:40.878 -07 000000627 INF: FPGA: Recv ZSGSRD 30736 17-03-17 23:47:40.888 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:40.888 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:40.888 -07 000000480 INF: FPGA: Recv ZSGSRD 30746 17-03-17 23:47:40.898 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:40.898 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:40.898 -07 000000576 INF: FPGA: Recv ZSGSRD 30750 17-03-17 23:47:40.908 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:40.908 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:40.908 -07 000000415 INF: FPGA: Recv ZSGSRD 30736 17-03-17 23:47:40.918 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:40.918 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:40.918 -07 000000627 INF: FPGA: Recv ZSGSRD 30741 17-03-17 23:47:40.928 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:40.928 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:40.928 -07 000000415 INF: FPGA: Recv ZSGSRD 30744 17-03-17 23:47:40.938 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:40.938 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:40.938 -07 000000433 INF: FPGA: Recv ZSGSRD 30736 17-03-17 23:47:40.948 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:40.948 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:40.948 -07 000000576 INF: FPGA: Recv ZSGSRD 30743 17-03-17 23:47:40.958 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:40.958 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:47:40.958 -07 000000627 INF: FPGA: Recv ZPIEZORD 26495 17-03-17 23:47:40.968 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:40.968 -07 000000618 INF: Z Motor: Piezo is near 36.6 V (nominally 0 to 100 V), expect near 45.9 V, since DAC is at 4.594 V. Piezo Error = -9.3 V. 17-03-17 23:47:40.968 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.8 um, Read 10 ADC samples: Avg = 30741 (-137.0 uncal um), Error = 0.8 uncal um, Median = 30740 (-137.0 uncal um), StdDev = 5 (0.0 uncal um), Range = 15 (0.1 uncal um), Min = 30735 (-137.0 uncal um), Max = 30750 (-137.1 uncal um), Pos Noise = 9 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um) 17-03-17 23:47:40.968 -07 000000618 INF: Z Motor: ADC noise = 9, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30741, posNoise = 9, negNoise = 6 17-03-17 23:47:40.968 -07 000000618 INF: Z Motor: After move to -0.137812, error = 0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:47:40.968 -07 000000618 INF: Z Motor: Settle wait time = 1454 ms, measure time = 104 ms (allowed 150 ms), total time = 1558 ms 17-03-17 23:47:40.968 -07 000000618 INF: Z Motor: Waiting extra 46 ms after reading position to reach expected total of 150 ms 17-03-17 23:47:41.018 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1613 ms 17-03-17 23:47:41.018 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 23:47:41.018 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:47:41.018 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:47:41.018 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:47:41.018 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 23:47:41.018 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:47:41.018 -07 000000409 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:47:41.018 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms. 17-03-17 23:47:41.018 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 23:47:41.028 -07 000000482 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-17 23:47:41.028 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 23:47:41.028 -07 000000482 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms. 17-03-17 23:47:41.028 -07 000000482 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms. 17-03-17 23:47:41.038 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:47:41.078 -07 000000415 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 23:47:41.318 -07 000000409 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 78, FrontChillerTemperature: 4.012614, 17-03-17 23:47:41.378 -07 000000433 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-17 23:47:41.378 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-17 23:47:41.378 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 23:47:41.378 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 615841328, 0x0, 559484976) start. 17-03-17 23:47:41.418 -07 000000482 INF: FPGA: Recv @CAMSNAP 380 17-03-17 23:47:41.418 -07 000000547 INF: FPGA: Recv CAMSNAP 17-03-17 23:47:41.418 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall 17-03-17 23:47:41.498 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 615841328, 0x0, 559484976) end. Duration was 114 ms. 17-03-17 23:47:41.498 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:47:41.498 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-17 23:47:41.498 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 117 ms. 17-03-17 23:47:41.518 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:47:41.518 -07 000000627 INF: Autofocus start 17-03-17 23:47:41.518 -07 000000627 INF: MeasureProfile start 17-03-17 23:47:41.518 -07 000000482 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:47:41.528 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-17 23:47:41.528 -07 000000433 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 23:47:41.528 -07 000000627 INF: MeasureProfile done 17-03-17 23:47:41.528 -07 000000627 INF: X=0 Z correction [um]=-0.02394831 17-03-17 23:47:41.528 -07 000000627 INF: Autofocus finished 17-03-17 23:47:41.728 -07 000000627 INF: FPGA: Recv FOCMRRIMG 17-03-17 23:47:41.728 -07 000000433 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 23:47:41.728 -07 000000610 INF: ------------ Scan Snapping tile 6 at Y-position 64.05712890625, Z-position -0.137810057461009. ---------- 17-03-17 23:47:41.728 -07 000000610 INF: Cycle 78 Tile 6 Exposure Settings A 1037 G 500 T 500 C 1037 17-03-17 23:47:41.738 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28612, sync = True, waitForSettling = True) 17-03-17 23:47:41.738 -07 000000610 INF: Z Motor: Moving to -0.130977 mm, started at -0.137810 mm, distance = 6.83 um 17-03-17 23:47:41.738 -07 000000610 INF: FPGA: Xmit ZDACW 28612\n [Z Motor] 17-03-17 23:47:41.738 -07 000000482 INF: FPGA: Recv ZDACW 17-03-17 23:47:41.748 -07 000000610 INF: FPGA: 'ZDACW 28612' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:47:41.748 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:47:41.748 -07 000000480 INF: FPGA: Recv ZDACR 28612 17-03-17 23:47:41.758 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:41.758 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:47:41.908 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:41.908 -07 000000627 INF: FPGA: Recv ZSGSRD 29677 17-03-17 23:47:41.918 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:47:41.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:41.918 -07 000000433 INF: FPGA: Recv ZSGSRD 29678 17-03-17 23:47:41.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:41.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:41.928 -07 000000482 INF: FPGA: Recv ZSGSRD 29677 17-03-17 23:47:41.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:41.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:41.938 -07 000000433 INF: FPGA: Recv ZSGSRD 29676 17-03-17 23:47:41.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:41.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:41.948 -07 000000627 INF: FPGA: Recv ZSGSRD 29674 17-03-17 23:47:41.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:41.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:41.958 -07 000000627 INF: FPGA: Recv ZSGSRD 29681 17-03-17 23:47:41.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:41.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:41.968 -07 000000627 INF: FPGA: Recv ZSGSRD 29676 17-03-17 23:47:41.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:41.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:41.978 -07 000000627 INF: FPGA: Recv ZSGSRD 29681 17-03-17 23:47:41.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:41.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:41.988 -07 000000480 INF: FPGA: Recv ZSGSRD 29677 17-03-17 23:47:41.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:41.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:41.998 -07 000000482 INF: FPGA: Recv ZSGSRD 29677 17-03-17 23:47:42.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:42.008 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:47:42.008 -07 000000480 INF: FPGA: Recv ZPIEZORD 25101 17-03-17 23:47:42.018 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:42.018 -07 000000610 INF: Z Motor: Piezo is near 33.6 V (nominally 0 to 100 V), expect near 43.7 V, since DAC is at 4.366 V. Piezo Error = -10.0 V. 17-03-17 23:47:42.018 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -131.0 um, Read 10 ADC samples: Avg = 29677 (-130.2 uncal um), Error = 0.8 uncal um, Median = 29677 (-130.2 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29674 (-130.2 uncal um), Max = 29681 (-130.2 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um) 17-03-17 23:47:42.018 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29677, posNoise = 4, negNoise = 3 17-03-17 23:47:42.018 -07 000000610 INF: Z Motor: After move to -0.130977, error = 0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:47:42.018 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms) 17-03-17 23:47:42.018 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:47:42.018 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:47:42.018 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:47:42.018 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:47:42.018 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 23:47:42.018 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 23:47:42.018 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 23:47:42.018 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:47:42.018 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-17 23:47:42.018 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 23:47:42.018 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:47:42.018 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 23:47:42.028 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-17 23:47:42.028 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 23:47:42.028 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms. 17-03-17 23:47:42.028 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 23:47:42.038 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms. 17-03-17 23:47:42.038 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms. 17-03-17 23:47:42.038 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms. 17-03-17 23:47:42.038 -07 000000480 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms. 17-03-17 23:47:42.048 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 28789 150\n [Camera] 17-03-17 23:47:42.098 -07 000000627 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:47:42.098 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 77. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1270, R2=1321, Total=2591. Warn if over 250 bubbles per interval. 17-03-17 23:47:42.248 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 23:47:43.278 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229 17-03-17 23:47:43.278 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229 17-03-17 23:47:43.278 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:47:43.278 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:47:43.288 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start. 17-03-17 23:47:43.288 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229 17-03-17 23:47:43.288 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229 17-03-17 23:47:43.288 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:47:43.288 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:47:43.288 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start. 17-03-17 23:47:43.478 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28789 1424 17-03-17 23:47:43.628 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572 17-03-17 23:47:43.678 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 399 ms. 17-03-17 23:47:43.678 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms. 17-03-17 23:47:43.678 -07 000000627 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:47:43.688 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 399 ms. 17-03-17 23:47:43.688 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms. 17-03-17 23:47:43.688 -07 000000482 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:47:43.688 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:47:43.688 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms. 17-03-17 23:47:43.688 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:47:43.698 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms. 17-03-17 23:47:44.128 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072 17-03-17 23:47:44.128 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072 17-03-17 23:47:44.128 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:47:44.128 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:47:44.128 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start. 17-03-17 23:47:44.128 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072 17-03-17 23:47:44.128 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072 17-03-17 23:47:44.128 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:47:44.128 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:47:44.128 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start. 17-03-17 23:47:44.318 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 2264 17-03-17 23:47:44.318 -07 000000627 INF: FPGA: Recv CAMDBLSNAP 17-03-17 23:47:44.318 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 28789 150' command took 2 ms to send, 2263 ms to get response, and 2272 ms overall 17-03-17 23:47:44.318 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-17 23:47:44.318 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 7 at Y-position 64.05712890625, Z-Position -0.130974695742175. ------ 17-03-17 23:47:44.318 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:47:44.318 -07 000000459 INF: Y Motor: MoveYZ optimized starting. Moving Y to 64.8926 mm, moving Z to -0.13716 mm 17-03-17 23:47:44.318 -07 000000459 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 23:47:44.438 -07 000000438 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:47:44.438 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 118 ms to get response, and 120 ms overall 17-03-17 23:47:44.438 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 23:47:44.438 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 29963, sync = True, waitForSettling = False) 17-03-17 23:47:44.438 -07 000000627 INF: Z Motor: Moving to -0.137162 mm, started at -0.130975 mm, distance = -6.19 um 17-03-17 23:47:44.438 -07 000000433 INF: Y Motor: Entering MoveAbsStepped (target = 103828 steps, sync = True, waitForSettling = True) 17-03-17 23:47:44.448 -07 000000433 INF: Y Motor: Moving to 64.8926 mm, started at 64.0571 mm, delta = 0.8355 mm 17-03-17 23:47:44.448 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:47:44.448 -07 000000541 INF: FPGA: Recv YRDPOS 131189 17-03-17 23:47:44.458 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:44.458 -07 000000433 INF: Y Motor: Encoder = 131189 = motor step 102491.4 = 64.0571 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:47:44.458 -07 000000433 INF: Y Motor: Last commanded position = 64.0626 mm (102500.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 23:47:44.458 -07 000000433 INF: Y Motor: Moving 1337 steps-11 17-03-17 23:47:44.458 -07 000000627 INF: FPGA: Xmit ZDACW 29963\n [Z Motor] 17-03-17 23:47:44.458 -07 000000438 INF: FPGA: Recv ZDACW 17-03-17 23:47:44.468 -07 000000627 INF: FPGA: 'ZDACW 29963' command took 0 ms to send, 0 ms to get response, and 20 ms overall 17-03-17 23:47:44.468 -07 000000433 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 23:47:44.478 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:47:44.478 -07 000000512 INF: FPGA: Recv ZDACR 29963 17-03-17 23:47:44.488 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-17 23:47:44.488 -07 000000627 INF: Z Motor: MoveAbsStepped took 40 ms (did NOT wait for settling yet)) 17-03-17 23:47:44.528 -07 000000482 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 398 ms. 17-03-17 23:47:44.528 -07 000000482 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms. 17-03-17 23:47:44.528 -07 000000482 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:47:44.528 -07 000000547 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 399 ms. 17-03-17 23:47:44.528 -07 000000547 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms. 17-03-17 23:47:44.528 -07 000000547 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:47:44.528 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:47:44.528 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 8 ms. 17-03-17 23:47:44.528 -07 000000482 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms. 17-03-17 23:47:44.538 -07 000000547 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms. 17-03-17 23:47:44.648 -07 000000618 INF: FPGA: Recv FOCMRRFOC 17-03-17 23:47:44.648 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 202 ms to get response, and 202 ms overall 17-03-17 23:47:44.838 -07 000000623 INF: FPGA: Recv YMVTILE 17-03-17 23:47:44.838 -07 000000433 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 387 ms overall 17-03-17 23:47:44.878 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:47:44.888 -07 000000482 INF: FPGA: Recv YRDPOS 132872 17-03-17 23:47:44.888 -07 000000433 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 3 ms overall 17-03-17 23:47:44.888 -07 000000433 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:47:44.888 -07 000000433 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm) 17-03-17 23:47:44.888 -07 000000433 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 387 ms, distance = 0.835 mm, average velocity = 2.159 mm/sec 17-03-17 23:47:45.838 -07 000000433 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:47:45.838 -07 000000480 INF: FPGA: Recv YRDPOS 132872 17-03-17 23:47:45.848 -07 000000433 INF: FPGA: 'YRDPOS' command took 1 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:45.848 -07 000000433 INF: Y Motor: Encoder = 132872 = motor step 103806.3 = 64.8789 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:47:45.868 -07 000000433 INF: Y Motor: After move to 64.892609, error = -0.013702, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 23:47:45.868 -07 000000433 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm) 17-03-17 23:47:45.868 -07 000000433 INF: Y Motor: Moved to 64.8789 after 1425 ms (table move) 17-03-17 23:47:45.878 -07 000000459 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137162 mm (DAC = 29963) 17-03-17 23:47:45.878 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:45.878 -07 000000482 INF: FPGA: Recv ZSGSRD 30636 17-03-17 23:47:45.888 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:45.888 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:45.888 -07 000000433 INF: FPGA: Recv ZSGSRD 30638 17-03-17 23:47:45.898 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:45.898 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:45.898 -07 000000480 INF: FPGA: Recv ZSGSRD 30643 17-03-17 23:47:45.908 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:45.908 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:45.908 -07 000000623 INF: FPGA: Recv ZSGSRD 30649 17-03-17 23:47:45.918 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:45.918 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:45.918 -07 000000480 INF: FPGA: Recv ZSGSRD 30640 17-03-17 23:47:45.928 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:45.928 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:45.928 -07 000000623 INF: FPGA: Recv ZSGSRD 30647 17-03-17 23:47:45.938 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:45.938 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:45.938 -07 000000482 INF: FPGA: Recv ZSGSRD 30642 17-03-17 23:47:45.948 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:45.948 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:45.948 -07 000000480 INF: FPGA: Recv ZSGSRD 30638 17-03-17 23:47:45.958 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:45.958 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:45.958 -07 000000438 INF: FPGA: Recv ZSGSRD 30641 17-03-17 23:47:45.968 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:45.968 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:45.968 -07 000000512 INF: FPGA: Recv ZSGSRD 30636 17-03-17 23:47:45.978 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:45.978 -07 000000459 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:47:45.978 -07 000000438 INF: FPGA: Recv ZPIEZORD 26406 17-03-17 23:47:45.988 -07 000000459 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:45.988 -07 000000459 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.7 V, since DAC is at 4.572 V. Piezo Error = -9.3 V. 17-03-17 23:47:45.988 -07 000000459 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.2 um, Read 10 ADC samples: Avg = 30641 (-136.4 uncal um), Error = 0.8 uncal um, Median = 30640 (-136.4 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30636 (-136.3 uncal um), Max = 30649 (-136.4 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-17 23:47:45.988 -07 000000459 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30641, posNoise = 8, negNoise = 5 17-03-17 23:47:45.988 -07 000000459 INF: Z Motor: After move to -0.137162, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:47:45.988 -07 000000459 INF: Z Motor: Settle wait time = 1430 ms, measure time = 110 ms (allowed 150 ms), total time = 1540 ms 17-03-17 23:47:45.988 -07 000000459 INF: Z Motor: Waiting extra 40 ms after reading position to reach expected total of 150 ms 17-03-17 23:47:46.028 -07 000000459 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1701 ms 17-03-17 23:47:46.028 -07 000000459 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 23:47:46.028 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:47:46.028 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:47:46.028 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:47:46.028 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:47:46.028 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 23:47:46.028 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:47:46.028 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-17 23:47:46.028 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 23:47:46.038 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-17 23:47:46.038 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 23:47:46.038 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 7 ms. 17-03-17 23:47:46.038 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 11 ms. 17-03-17 23:47:46.048 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:47:46.088 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 23:47:46.388 -07 000000433 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-17 23:47:46.388 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-17 23:47:46.388 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 23:47:46.388 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start. 17-03-17 23:47:46.428 -07 000000459 INF: FPGA: Recv @CAMSNAP 380 17-03-17 23:47:46.428 -07 000000623 INF: FPGA: Recv CAMSNAP 17-03-17 23:47:46.428 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall 17-03-17 23:47:46.508 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms. 17-03-17 23:47:46.508 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:47:46.508 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-17 23:47:46.508 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms. 17-03-17 23:47:46.528 -07 000000480 INF: Autofocus start 17-03-17 23:47:46.528 -07 000000480 INF: MeasureProfile start 17-03-17 23:47:46.528 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:47:46.528 -07 000000618 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:47:46.538 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 23:47:46.538 -07 000000623 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 23:47:46.538 -07 000000480 INF: MeasureProfile done 17-03-17 23:47:46.538 -07 000000480 INF: X=74 Z correction [um]=0.3320204 17-03-17 23:47:46.538 -07 000000480 INF: Autofocus finished 17-03-17 23:47:46.678 -07 000000433 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 78, FrontChillerTemperature: 4.019446, 17-03-17 23:47:46.738 -07 000000480 INF: FPGA: Recv FOCMRRIMG 17-03-17 23:47:46.738 -07 000000623 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 23:47:46.738 -07 000000610 INF: ------------ Scan Snapping tile 7 at Y-position 64.87890625, Z-position -0.137167636246832. ---------- 17-03-17 23:47:46.738 -07 000000610 INF: Cycle 78 Tile 7 Exposure Settings A 1037 G 500 T 500 C 1037 17-03-17 23:47:46.748 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28548, sync = True, waitForSettling = True) 17-03-17 23:47:46.748 -07 000000610 INF: Z Motor: Moving to -0.130684 mm, started at -0.137168 mm, distance = 6.48 um 17-03-17 23:47:46.748 -07 000000610 INF: FPGA: Xmit ZDACW 28548\n [Z Motor] 17-03-17 23:47:46.748 -07 000000433 INF: FPGA: Recv ZDACW 17-03-17 23:47:46.758 -07 000000610 INF: FPGA: 'ZDACW 28548' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:46.758 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:47:46.758 -07 000000623 INF: FPGA: Recv ZDACR 28548 17-03-17 23:47:46.768 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:46.768 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:47:46.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:46.918 -07 000000623 INF: FPGA: Recv ZSGSRD 29633 17-03-17 23:47:46.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:47:46.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:46.928 -07 000000480 INF: FPGA: Recv ZSGSRD 29631 17-03-17 23:47:46.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:46.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:46.938 -07 000000480 INF: FPGA: Recv ZSGSRD 29634 17-03-17 23:47:46.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:46.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:46.948 -07 000000433 INF: FPGA: Recv ZSGSRD 29637 17-03-17 23:47:46.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:46.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:46.958 -07 000000438 INF: FPGA: Recv ZSGSRD 29635 17-03-17 23:47:46.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:47:46.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:46.968 -07 000000480 INF: FPGA: Recv ZSGSRD 29642 17-03-17 23:47:46.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:46.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:46.978 -07 000000433 INF: FPGA: Recv ZSGSRD 29631 17-03-17 23:47:46.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:46.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:46.988 -07 000000438 INF: FPGA: Recv ZSGSRD 29637 17-03-17 23:47:46.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:47:46.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:46.998 -07 000000623 INF: FPGA: Recv ZSGSRD 29635 17-03-17 23:47:47.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:47.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:47.008 -07 000000438 INF: FPGA: Recv ZSGSRD 29629 17-03-17 23:47:47.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:47.018 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:47:47.018 -07 000000480 INF: FPGA: Recv ZPIEZORD 25035 17-03-17 23:47:47.028 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:47.028 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.6 V, since DAC is at 4.356 V. Piezo Error = -10.1 V. 17-03-17 23:47:47.028 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.7 um, Read 10 ADC samples: Avg = 29634 (-129.9 uncal um), Error = 0.8 uncal um, Median = 29634 (-129.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29629 (-129.9 uncal um), Max = 29642 (-130.0 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-17 23:47:47.028 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29634, posNoise = 8, negNoise = 5 17-03-17 23:47:47.028 -07 000000610 INF: Z Motor: After move to -0.130684, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:47:47.028 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms) 17-03-17 23:47:47.028 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:47:47.028 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:47:47.028 -07 000000438 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:47:47.028 -07 000000433 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:47:47.028 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 23:47:47.028 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 23:47:47.028 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 23:47:47.028 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:47:47.028 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-17 23:47:47.028 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:47:47.028 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 23:47:47.028 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 23:47:47.038 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-17 23:47:47.038 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 23:47:47.038 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms. 17-03-17 23:47:47.038 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 23:47:47.048 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms. 17-03-17 23:47:47.048 -07 000000618 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms. 17-03-17 23:47:47.048 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms. 17-03-17 23:47:47.048 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms. 17-03-17 23:47:47.058 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 28725 150\n [Camera] 17-03-17 23:47:47.098 -07 000000438 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:47:47.098 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 77. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1270, R2=1321, Total=2591. Warn if over 250 bubbles per interval. 17-03-17 23:47:47.248 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 23:47:48.298 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1230 17-03-17 23:47:48.298 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1230 17-03-17 23:47:48.298 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:47:48.298 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1230 17-03-17 23:47:48.298 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1230 17-03-17 23:47:48.298 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:47:48.298 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:47:48.298 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start. 17-03-17 23:47:48.308 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:47:48.308 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start. 17-03-17 23:47:48.488 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28725 1422 17-03-17 23:47:48.628 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572 17-03-17 23:47:48.698 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 393 ms. 17-03-17 23:47:48.698 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms. 17-03-17 23:47:48.698 -07 000000623 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:47:48.698 -07 000000475 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 394 ms. 17-03-17 23:47:48.698 -07 000000475 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms. 17-03-17 23:47:48.698 -07 000000475 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:47:48.698 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:47:48.698 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms. 17-03-17 23:47:48.698 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:47:48.708 -07 000000475 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms. 17-03-17 23:47:49.138 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072 17-03-17 23:47:49.138 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072 17-03-17 23:47:49.138 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:47:49.138 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072 17-03-17 23:47:49.138 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072 17-03-17 23:47:49.138 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:47:49.138 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:47:49.138 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start. 17-03-17 23:47:49.148 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:47:49.148 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start. 17-03-17 23:47:49.328 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP 2264 17-03-17 23:47:49.328 -07 000000448 INF: FPGA: Recv CAMDBLSNAP 17-03-17 23:47:49.328 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 28725 150' command took 2 ms to send, 2262 ms to get response, and 2272 ms overall 17-03-17 23:47:49.328 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-17 23:47:49.328 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 8 at Y-position 64.87890625, Z-Position -0.130698454620079. ------ 17-03-17 23:47:49.448 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:47:49.448 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 65.7226 mm, moving Z to -0.13742 mm 17-03-17 23:47:49.448 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 23:47:49.448 -07 000000561 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:47:49.448 -07 000000480 INF: Z Motor: Entering MoveAbsStepped (DAC = 30020, sync = True, waitForSettling = False) 17-03-17 23:47:49.448 -07 000000480 INF: Z Motor: Moving to -0.137423 mm, started at -0.130698 mm, distance = -6.72 um 17-03-17 23:47:49.448 -07 000000448 INF: Y Motor: Entering MoveAbsStepped (target = 105156 steps, sync = True, waitForSettling = True) 17-03-17 23:47:49.448 -07 000000448 INF: Y Motor: Moving to 65.7226 mm, started at 64.8789 mm, delta = 0.8437 mm 17-03-17 23:47:49.458 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:47:49.458 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:47:49.458 -07 000000547 INF: FPGA: Recv YRDPOS 132873 17-03-17 23:47:49.468 -07 000000480 INF: FPGA: Xmit ZDACW 30020\n [Z Motor] 17-03-17 23:47:49.468 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 12 ms overall 17-03-17 23:47:49.468 -07 000000448 INF: Y Motor: Encoder = 132873 = motor step 103807.0 = 64.8794 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:47:49.468 -07 000000415 INF: FPGA: Recv ZDACW 17-03-17 23:47:49.468 -07 000000448 INF: Y Motor: Last commanded position = 64.8926 mm (103828.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 23:47:49.468 -07 000000448 INF: Y Motor: Moving 1349 steps-28 17-03-17 23:47:49.478 -07 000000433 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 23:47:49.478 -07 000000480 INF: FPGA: 'ZDACW 30020' command took 0 ms to send, 0 ms to get response, and 22 ms overall 17-03-17 23:47:49.488 -07 000000448 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 23:47:49.498 -07 000000480 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:47:49.498 -07 000000576 INF: FPGA: Recv ZDACR 30020 17-03-17 23:47:49.508 -07 000000480 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-17 23:47:49.508 -07 000000480 INF: Z Motor: MoveAbsStepped took 53 ms (did NOT wait for settling yet)) 17-03-17 23:47:49.538 -07 000000475 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 394 ms. 17-03-17 23:47:49.538 -07 000000475 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms. 17-03-17 23:47:49.538 -07 000000475 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:47:49.538 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 392 ms. 17-03-17 23:47:49.538 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms. 17-03-17 23:47:49.538 -07 000000486 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:47:49.538 -07 000000475 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:47:49.538 -07 000000475 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms. 17-03-17 23:47:49.548 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms. 17-03-17 23:47:49.548 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms. 17-03-17 23:47:49.678 -07 000000623 INF: FPGA: Recv FOCMRRFOC 17-03-17 23:47:49.678 -07 000000433 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 222 ms overall 17-03-17 23:47:49.858 -07 000000415 INF: FPGA: Recv YMVTILE 17-03-17 23:47:49.858 -07 000000448 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 393 ms overall 17-03-17 23:47:49.908 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:47:49.908 -07 000000547 INF: FPGA: Recv YRDPOS 134582 17-03-17 23:47:49.918 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:49.918 -07 000000448 INF: Y Motor: Encoder = 134582 = motor step 105142.2 = 65.7139 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:47:49.918 -07 000000448 INF: Y Motor: Position error before settling (table move) = -18 encoder counts (-0.009 mm) 17-03-17 23:47:49.918 -07 000000448 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.844 mm, average velocity = 2.147 mm/sec 17-03-17 23:47:50.868 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:47:50.868 -07 000000547 INF: FPGA: Recv YRDPOS 134583 17-03-17 23:47:50.878 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:47:50.878 -07 000000448 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:47:50.898 -07 000000448 INF: Y Motor: After move to 65.722610, error = -0.008255, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 23:47:50.898 -07 000000448 INF: Y Motor: Position error after settling (table move) = -17 encoder counts (-0.008 mm), Delta during settling = 1 counts (0.000 mm) 17-03-17 23:47:50.898 -07 000000448 INF: Y Motor: Moved to 65.7144 after 1450 ms (table move) 17-03-17 23:47:50.908 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.137423 mm (DAC = 30020) 17-03-17 23:47:50.908 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:50.908 -07 000000433 INF: FPGA: Recv ZSGSRD 30688 17-03-17 23:47:50.918 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:47:50.918 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:50.918 -07 000000623 INF: FPGA: Recv ZSGSRD 30683 17-03-17 23:47:50.928 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:50.928 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:50.928 -07 000000576 INF: FPGA: Recv ZSGSRD 30681 17-03-17 23:47:50.938 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:50.938 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:50.938 -07 000000561 INF: FPGA: Recv ZSGSRD 30688 17-03-17 23:47:50.948 -07 000000618 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:50.948 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:50.948 -07 000000480 INF: FPGA: Recv ZSGSRD 30687 17-03-17 23:47:50.958 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:50.958 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:50.958 -07 000000475 INF: FPGA: Recv ZSGSRD 30679 17-03-17 23:47:50.968 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:50.968 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:50.968 -07 000000409 INF: FPGA: Recv ZSGSRD 30684 17-03-17 23:47:50.978 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:50.978 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:50.978 -07 000000561 INF: FPGA: Recv ZSGSRD 30684 17-03-17 23:47:50.988 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:50.988 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:50.988 -07 000000409 INF: FPGA: Recv ZSGSRD 30682 17-03-17 23:47:50.998 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:50.998 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:50.998 -07 000000475 INF: FPGA: Recv ZSGSRD 30682 17-03-17 23:47:51.008 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:51.008 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:47:51.008 -07 000000480 INF: FPGA: Recv ZPIEZORD 26470 17-03-17 23:47:51.018 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:51.018 -07 000000618 INF: Z Motor: Piezo is near 36.5 V (nominally 0 to 100 V), expect near 45.8 V, since DAC is at 4.581 V. Piezo Error = -9.3 V. 17-03-17 23:47:51.018 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -137.4 um, Read 10 ADC samples: Avg = 30684 (-136.6 uncal um), Error = 0.8 uncal um, Median = 30684 (-136.6 uncal um), StdDev = 3 (0.0 uncal um), Range = 9 (0.1 uncal um), Min = 30679 (-136.6 uncal um), Max = 30688 (-136.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-17 23:47:51.018 -07 000000618 INF: Z Motor: ADC noise = 5, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30684, posNoise = 4, negNoise = 5 17-03-17 23:47:51.018 -07 000000618 INF: Z Motor: After move to -0.137423, error = -0.000021, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:47:51.018 -07 000000618 INF: Z Motor: Settle wait time = 1455 ms, measure time = 108 ms (allowed 150 ms), total time = 1563 ms 17-03-17 23:47:51.018 -07 000000618 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms 17-03-17 23:47:51.068 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1617 ms 17-03-17 23:47:51.068 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 23:47:51.068 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:47:51.068 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:47:51.068 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:47:51.068 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:47:51.068 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 23:47:51.068 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:47:51.068 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms. 17-03-17 23:47:51.068 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 23:47:51.078 -07 000000486 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms. 17-03-17 23:47:51.078 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 23:47:51.088 -07 000000486 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms. 17-03-17 23:47:51.088 -07 000000486 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 19 ms. 17-03-17 23:47:51.088 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:47:51.138 -07 000000547 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 23:47:51.438 -07 000000576 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-17 23:47:51.438 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-17 23:47:51.438 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 23:47:51.438 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start. 17-03-17 23:47:51.478 -07 000000576 INF: FPGA: Recv @CAMSNAP 381 17-03-17 23:47:51.478 -07 000000433 INF: FPGA: Recv CAMSNAP 17-03-17 23:47:51.478 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 384 ms to get response, and 385 ms overall 17-03-17 23:47:51.568 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms. 17-03-17 23:47:51.568 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:47:51.568 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-17 23:47:51.568 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms. 17-03-17 23:47:51.578 -07 000000576 INF: Autofocus start 17-03-17 23:47:51.578 -07 000000576 INF: MeasureProfile start 17-03-17 23:47:51.578 -07 000000547 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:47:51.578 -07 000000415 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:47:51.588 -07 000000547 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 23:47:51.588 -07 000000547 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 23:47:51.588 -07 000000576 INF: MeasureProfile done 17-03-17 23:47:51.588 -07 000000576 INF: X=0 Z correction [um]=-0.02394831 17-03-17 23:47:51.588 -07 000000576 INF: Autofocus finished 17-03-17 23:47:51.788 -07 000000433 INF: FPGA: Recv FOCMRRIMG 17-03-17 23:47:51.788 -07 000000547 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 23:47:51.788 -07 000000610 INF: ------------ Scan Snapping tile 8 at Y-position 65.71435546875, Z-position -0.137443877368928. ---------- 17-03-17 23:47:51.788 -07 000000610 INF: Cycle 78 Tile 8 Exposure Settings A 1037 G 500 T 500 C 1037 17-03-17 23:47:51.788 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28527, sync = True, waitForSettling = True) 17-03-17 23:47:51.798 -07 000000610 INF: Z Motor: Moving to -0.130588 mm, started at -0.137444 mm, distance = 6.86 um 17-03-17 23:47:51.798 -07 000000610 INF: FPGA: Xmit ZDACW 28527\n [Z Motor] 17-03-17 23:47:51.798 -07 000000547 INF: FPGA: Recv ZDACW 17-03-17 23:47:51.808 -07 000000610 INF: FPGA: 'ZDACW 28527' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:47:51.808 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:47:51.808 -07 000000433 INF: FPGA: Recv ZDACR 28527 17-03-17 23:47:51.818 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:51.818 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:47:51.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:51.968 -07 000000561 INF: FPGA: Recv ZSGSRD 29620 17-03-17 23:47:51.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:47:51.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:51.978 -07 000000433 INF: FPGA: Recv ZSGSRD 29623 17-03-17 23:47:51.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:51.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:51.988 -07 000000415 INF: FPGA: Recv ZSGSRD 29617 17-03-17 23:47:51.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:51.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:51.998 -07 000000433 INF: FPGA: Recv ZSGSRD 29614 17-03-17 23:47:52.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:52.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:52.008 -07 000000561 INF: FPGA: Recv ZSGSRD 29618 17-03-17 23:47:52.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:52.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:52.018 -07 000000576 INF: FPGA: Recv ZSGSRD 29617 17-03-17 23:47:52.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:52.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:52.038 -07 000000547 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 78, FrontChillerTemperature: 4.052111, 17-03-17 23:47:52.038 -07 000000576 INF: FPGA: Recv ZSGSRD 29626 17-03-17 23:47:52.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-17 23:47:52.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:52.068 -07 000000433 INF: FPGA: Recv ZSGSRD 29616 17-03-17 23:47:52.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-17 23:47:52.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:52.078 -07 000000576 INF: FPGA: Recv ZSGSRD 29617 17-03-17 23:47:52.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:52.098 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:52.098 -07 000000576 INF: FPGA: Recv ZSGSRD 29614 17-03-17 23:47:52.098 -07 000000415 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:47:52.098 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 77. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1270, R2=1321, Total=2591. Warn if over 250 bubbles per interval. 17-03-17 23:47:52.108 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-17 23:47:52.118 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:47:52.118 -07 000000561 INF: FPGA: Recv ZPIEZORD 25021 17-03-17 23:47:52.128 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 20 ms overall 17-03-17 23:47:52.128 -07 000000610 INF: Z Motor: Piezo is near 33.5 V (nominally 0 to 100 V), expect near 43.5 V, since DAC is at 4.353 V. Piezo Error = -10.1 V. 17-03-17 23:47:52.128 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.6 um, Read 10 ADC samples: Avg = 29618 (-129.8 uncal um), Error = 0.8 uncal um, Median = 29617 (-129.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29614 (-129.8 uncal um), Max = 29626 (-129.9 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 4 (0.0 uncal um) 17-03-17 23:47:52.128 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29618, posNoise = 8, negNoise = 4 17-03-17 23:47:52.128 -07 000000610 INF: Z Motor: After move to -0.130588, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:47:52.128 -07 000000610 INF: Z Motor: MoveAbsStepped took 330 ms) 17-03-17 23:47:52.128 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:47:52.128 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:47:52.128 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:47:52.128 -07 000000415 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:47:52.128 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 23:47:52.128 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 23:47:52.128 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 23:47:52.128 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:47:52.128 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-17 23:47:52.128 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 23:47:52.128 -07 000000547 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:47:52.128 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 23:47:52.138 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms. 17-03-17 23:47:52.138 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 23:47:52.138 -07 000000547 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms. 17-03-17 23:47:52.138 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 23:47:52.148 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms. 17-03-17 23:47:52.148 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms. 17-03-17 23:47:52.148 -07 000000547 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms. 17-03-17 23:47:52.148 -07 000000547 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms. 17-03-17 23:47:52.148 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 28704 150\n [Camera] 17-03-17 23:47:52.348 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 23:47:53.388 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229 17-03-17 23:47:53.388 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229 17-03-17 23:47:53.388 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:47:53.388 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229 17-03-17 23:47:53.388 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229 17-03-17 23:47:53.398 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:47:53.398 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:47:53.398 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start. 17-03-17 23:47:53.398 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:47:53.398 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start. 17-03-17 23:47:53.578 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28704 1422 17-03-17 23:47:53.728 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572 17-03-17 23:47:53.788 -07 000000561 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 395 ms. 17-03-17 23:47:53.788 -07 000000561 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms. 17-03-17 23:47:53.788 -07 000000561 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:47:53.798 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 394 ms. 17-03-17 23:47:53.798 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms. 17-03-17 23:47:53.798 -07 000000627 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:47:53.798 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:47:53.798 -07 000000561 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms. 17-03-17 23:47:53.798 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 5 ms. 17-03-17 23:47:53.808 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms. 17-03-17 23:47:54.228 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072 17-03-17 23:47:54.238 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072 17-03-17 23:47:54.238 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:47:54.238 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:47:54.238 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) start. 17-03-17 23:47:54.238 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072 17-03-17 23:47:54.238 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072 17-03-17 23:47:54.238 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:47:54.238 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:47:54.238 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) start. 17-03-17 23:47:54.428 -07 000000459 INF: FPGA: Recv @CAMDBLSNAP 2265 17-03-17 23:47:54.428 -07 000000541 INF: FPGA: Recv CAMDBLSNAP 17-03-17 23:47:54.428 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 28704 150' command took 2 ms to send, 2261 ms to get response, and 2272 ms overall 17-03-17 23:47:54.428 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-17 23:47:54.428 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 9 at Y-position 65.71435546875, Z-Position -0.130595667225811. ------ 17-03-17 23:47:54.428 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:47:54.428 -07 000000459 INF: Y Motor: MoveYZ optimized starting. Moving Y to 66.5526 mm, moving Z to -0.13691 mm 17-03-17 23:47:54.428 -07 000000459 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 23:47:54.438 -07 000000433 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:47:54.438 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-17 23:47:54.438 -07 000000502 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 23:47:54.438 -07 000000482 INF: Y Motor: Entering MoveAbsStepped (target = 106484 steps, sync = True, waitForSettling = True) 17-03-17 23:47:54.438 -07 000000482 INF: Y Motor: Moving to 66.5526 mm, started at 65.7144 mm, delta = 0.8382 mm 17-03-17 23:47:54.438 -07 000000541 INF: Z Motor: Entering MoveAbsStepped (DAC = 29909, sync = True, waitForSettling = False) 17-03-17 23:47:54.438 -07 000000541 INF: Z Motor: Moving to -0.136915 mm, started at -0.130596 mm, distance = -6.32 um 17-03-17 23:47:54.448 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:47:54.448 -07 000000382 INF: FPGA: Recv YRDPOS 134583 17-03-17 23:47:54.458 -07 000000541 INF: FPGA: Xmit ZDACW 29909\n [Z Motor] 17-03-17 23:47:54.458 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 18 ms overall 17-03-17 23:47:54.458 -07 000000482 INF: Y Motor: Encoder = 134583 = motor step 105143.0 = 65.7144 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:47:54.458 -07 000000482 INF: Y Motor: Last commanded position = 65.7226 mm (105156.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 23:47:54.458 -07 000000482 INF: Y Motor: Moving 1341 steps-18 17-03-17 23:47:54.458 -07 000000433 INF: FPGA: Recv ZDACW 17-03-17 23:47:54.468 -07 000000541 INF: FPGA: 'ZDACW 29909' command took 0 ms to send, 0 ms to get response, and 27 ms overall 17-03-17 23:47:54.468 -07 000000541 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:47:54.468 -07 000000561 INF: FPGA: Recv ZDACR 29909 17-03-17 23:47:54.478 -07 000000482 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 23:47:54.478 -07 000000541 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:54.478 -07 000000541 INF: Z Motor: MoveAbsStepped took 38 ms (did NOT wait for settling yet)) 17-03-17 23:47:54.638 -07 000000433 INF: FPGA: Recv FOCMRRFOC 17-03-17 23:47:54.638 -07 000000502 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall 17-03-17 23:47:54.638 -07 000000576 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) end. Duration was 404 ms. 17-03-17 23:47:54.638 -07 000000576 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms. 17-03-17 23:47:54.638 -07 000000576 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:47:54.638 -07 000000415 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) end. Duration was 403 ms. 17-03-17 23:47:54.638 -07 000000415 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 404 ms. 17-03-17 23:47:54.638 -07 000000415 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:47:54.648 -07 000000415 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:47:54.648 -07 000000576 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms. 17-03-17 23:47:54.648 -07 000000576 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 413 ms. 17-03-17 23:47:54.648 -07 000000415 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms. 17-03-17 23:47:54.848 -07 000000512 INF: FPGA: Recv YMVTILE 17-03-17 23:47:54.848 -07 000000482 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall 17-03-17 23:47:54.898 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:47:54.898 -07 000000547 INF: FPGA: Recv YRDPOS 136272 17-03-17 23:47:54.908 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:54.908 -07 000000482 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:47:54.908 -07 000000482 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm) 17-03-17 23:47:54.908 -07 000000482 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.838 mm, average velocity = 2.106 mm/sec 17-03-17 23:47:55.858 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:47:55.858 -07 000000433 INF: FPGA: Recv YRDPOS 136272 17-03-17 23:47:55.868 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:47:55.868 -07 000000482 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:47:55.888 -07 000000482 INF: Y Motor: After move to 66.552605, error = -0.013542, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 23:47:55.888 -07 000000482 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm) 17-03-17 23:47:55.888 -07 000000482 INF: Y Motor: Moved to 66.5391 after 1456 ms (table move) 17-03-17 23:47:55.898 -07 000000459 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136915 mm (DAC = 29909) 17-03-17 23:47:55.898 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:55.898 -07 000000502 INF: FPGA: Recv ZSGSRD 30597 17-03-17 23:47:55.908 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:47:55.908 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:55.908 -07 000000547 INF: FPGA: Recv ZSGSRD 30603 17-03-17 23:47:55.918 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:55.918 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:55.918 -07 000000547 INF: FPGA: Recv ZSGSRD 30608 17-03-17 23:47:55.928 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:55.928 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:55.928 -07 000000433 INF: FPGA: Recv ZSGSRD 30600 17-03-17 23:47:55.938 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:55.938 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:55.938 -07 000000502 INF: FPGA: Recv ZSGSRD 30600 17-03-17 23:47:55.948 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:55.948 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:55.948 -07 000000561 INF: FPGA: Recv ZSGSRD 30599 17-03-17 23:47:55.958 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:55.958 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:55.958 -07 000000561 INF: FPGA: Recv ZSGSRD 30599 17-03-17 23:47:55.968 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:55.968 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:55.968 -07 000000627 INF: FPGA: Recv ZSGSRD 30603 17-03-17 23:47:55.978 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:55.978 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:55.978 -07 000000415 INF: FPGA: Recv ZSGSRD 30595 17-03-17 23:47:55.988 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:55.988 -07 000000459 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:55.988 -07 000000512 INF: FPGA: Recv ZSGSRD 30609 17-03-17 23:47:55.998 -07 000000459 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:55.998 -07 000000459 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:47:55.998 -07 000000512 INF: FPGA: Recv ZPIEZORD 26390 17-03-17 23:47:56.008 -07 000000459 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:56.008 -07 000000459 INF: Z Motor: Piezo is near 36.4 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.564 V. Piezo Error = -9.3 V. 17-03-17 23:47:56.008 -07 000000459 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.9 um, Read 10 ADC samples: Avg = 30601 (-136.1 uncal um), Error = 0.8 uncal um, Median = 30600 (-136.1 uncal um), StdDev = 4 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 30595 (-136.1 uncal um), Max = 30609 (-136.2 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um) 17-03-17 23:47:56.008 -07 000000459 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30601, posNoise = 8, negNoise = 6 17-03-17 23:47:56.008 -07 000000459 INF: Z Motor: After move to -0.136915, error = 0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:47:56.008 -07 000000459 INF: Z Motor: Settle wait time = 1460 ms, measure time = 108 ms (allowed 150 ms), total time = 1568 ms 17-03-17 23:47:56.008 -07 000000459 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms 17-03-17 23:47:56.058 -07 000000459 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1623 ms 17-03-17 23:47:56.058 -07 000000459 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 23:47:56.058 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:47:56.058 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:47:56.058 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:47:56.058 -07 000000576 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:47:56.058 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 23:47:56.058 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:47:56.058 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-17 23:47:56.058 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 23:47:56.068 -07 000000512 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-17 23:47:56.068 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 23:47:56.068 -07 000000512 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms. 17-03-17 23:47:56.068 -07 000000512 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 10 ms. 17-03-17 23:47:56.078 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:47:56.118 -07 000000576 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 23:47:56.418 -07 000000415 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-17 23:47:56.418 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-17 23:47:56.418 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 23:47:56.418 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 615841328, 0x0, 559484976) start. 17-03-17 23:47:56.458 -07 000000512 INF: FPGA: Recv @CAMSNAP 380 17-03-17 23:47:56.458 -07 000000459 INF: FPGA: Recv CAMSNAP 17-03-17 23:47:56.458 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 376 ms to get response, and 384 ms overall 17-03-17 23:47:56.538 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 615841328, 0x0, 559484976) end. Duration was 114 ms. 17-03-17 23:47:56.538 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:47:56.538 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms. 17-03-17 23:47:56.538 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 119 ms. 17-03-17 23:47:56.558 -07 000000512 INF: Autofocus start 17-03-17 23:47:56.558 -07 000000512 INF: MeasureProfile start 17-03-17 23:47:56.558 -07 000000415 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:47:56.558 -07 000000459 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:47:56.568 -07 000000415 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 23:47:56.568 -07 000000415 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 23:47:56.568 -07 000000512 INF: MeasureProfile done 17-03-17 23:47:56.568 -07 000000512 INF: X=32 Z correction [um]=0.1299841 17-03-17 23:47:56.568 -07 000000512 INF: Autofocus finished 17-03-17 23:47:56.768 -07 000000459 INF: FPGA: Recv FOCMRRIMG 17-03-17 23:47:56.768 -07 000000415 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 195 ms to get response, and 205 ms overall 17-03-17 23:47:56.778 -07 000000610 INF: ------------ Scan Snapping tile 9 at Y-position 66.5390625, Z-position -0.136910667761162. ---------- 17-03-17 23:47:56.778 -07 000000610 INF: Cycle 78 Tile 9 Exposure Settings A 1037 G 500 T 500 C 1037 17-03-17 23:47:56.778 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28450, sync = True, waitForSettling = True) 17-03-17 23:47:56.778 -07 000000610 INF: Z Motor: Moving to -0.130236 mm, started at -0.136911 mm, distance = 6.67 um 17-03-17 23:47:56.778 -07 000000610 INF: FPGA: Xmit ZDACW 28450\n [Z Motor] 17-03-17 23:47:56.778 -07 000000512 INF: FPGA: Recv ZDACW 17-03-17 23:47:56.788 -07 000000610 INF: FPGA: 'ZDACW 28450' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-17 23:47:56.788 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:47:56.788 -07 000000459 INF: FPGA: Recv ZDACR 28450 17-03-17 23:47:56.798 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:56.798 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:47:56.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:56.948 -07 000000576 INF: FPGA: Recv ZSGSRD 29558 17-03-17 23:47:56.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:47:56.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:56.958 -07 000000459 INF: FPGA: Recv ZSGSRD 29566 17-03-17 23:47:56.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:56.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:56.968 -07 000000512 INF: FPGA: Recv ZSGSRD 29561 17-03-17 23:47:56.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:56.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:56.978 -07 000000459 INF: FPGA: Recv ZSGSRD 29565 17-03-17 23:47:56.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:56.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:56.988 -07 000000512 INF: FPGA: Recv ZSGSRD 29566 17-03-17 23:47:56.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:56.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:56.998 -07 000000512 INF: FPGA: Recv ZSGSRD 29560 17-03-17 23:47:57.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:57.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:57.008 -07 000000576 INF: FPGA: Recv ZSGSRD 29567 17-03-17 23:47:57.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:47:57.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:57.018 -07 000000512 INF: FPGA: Recv ZSGSRD 29564 17-03-17 23:47:57.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:57.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:57.028 -07 000000459 INF: FPGA: Recv ZSGSRD 29561 17-03-17 23:47:57.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:57.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:47:57.038 -07 000000576 INF: FPGA: Recv ZSGSRD 29568 17-03-17 23:47:57.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:57.048 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:47:57.048 -07 000000415 INF: FPGA: Recv ZPIEZORD 25013 17-03-17 23:47:57.058 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:57.058 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.341 V. Piezo Error = -10.0 V. 17-03-17 23:47:57.058 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.2 um, Read 10 ADC samples: Avg = 29564 (-129.5 uncal um), Error = 0.8 uncal um, Median = 29564 (-129.5 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29558 (-129.4 uncal um), Max = 29568 (-129.5 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um) 17-03-17 23:47:57.058 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29564, posNoise = 4, negNoise = 6 17-03-17 23:47:57.058 -07 000000610 INF: Z Motor: After move to -0.130236, error = -0.000013, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:47:57.058 -07 000000610 INF: Z Motor: MoveAbsStepped took 276 ms) 17-03-17 23:47:57.058 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:47:57.058 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:47:57.058 -07 000000576 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:47:57.058 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 23:47:57.058 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:47:57.058 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 23:47:57.058 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:47:57.058 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 23:47:57.058 -07 000000415 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-17 23:47:57.058 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 23:47:57.058 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-17 23:47:57.058 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 23:47:57.068 -07 000000415 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms. 17-03-17 23:47:57.068 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 23:47:57.068 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-17 23:47:57.068 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 23:47:57.078 -07 000000415 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms. 17-03-17 23:47:57.078 -07 000000415 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms. 17-03-17 23:47:57.078 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms. 17-03-17 23:47:57.078 -07 000000459 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms. 17-03-17 23:47:57.088 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 28626 150\n [Camera] 17-03-17 23:47:57.098 -07 000000512 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:47:57.098 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 77. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1270, R2=1321, Total=2591. Warn if over 250 bubbles per interval. 17-03-17 23:47:57.288 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 23:47:57.438 -07 000000415 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 78, FrontChillerTemperature: 4.023489, 17-03-17 23:47:58.318 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229 17-03-17 23:47:58.318 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229 17-03-17 23:47:58.318 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:47:58.318 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:47:58.328 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start. 17-03-17 23:47:58.328 -07 000000415 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229 17-03-17 23:47:58.328 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229 17-03-17 23:47:58.328 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:47:58.328 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:47:58.328 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start. 17-03-17 23:47:58.518 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28626 1422 17-03-17 23:47:58.668 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572 17-03-17 23:47:58.728 -07 000000623 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 400 ms. 17-03-17 23:47:58.728 -07 000000623 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms. 17-03-17 23:47:58.728 -07 000000623 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:47:58.728 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:47:58.728 -07 000000623 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms. 17-03-17 23:47:58.728 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 401 ms. 17-03-17 23:47:58.728 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 402 ms. 17-03-17 23:47:58.728 -07 000000459 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:47:58.728 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:47:58.738 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms. 17-03-17 23:47:59.168 -07 000000576 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072 17-03-17 23:47:59.168 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072 17-03-17 23:47:59.168 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:47:59.168 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:47:59.168 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start. 17-03-17 23:47:59.168 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072 17-03-17 23:47:59.168 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072 17-03-17 23:47:59.168 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:47:59.168 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:47:59.168 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start. 17-03-17 23:47:59.358 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP 2264 17-03-17 23:47:59.358 -07 000000448 INF: FPGA: Recv CAMDBLSNAP 17-03-17 23:47:59.358 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 28626 150' command took 2 ms to send, 2262 ms to get response, and 2272 ms overall 17-03-17 23:47:59.358 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-17 23:47:59.358 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 10 at Y-position 66.5390625, Z-Position -0.130248759770156. ------ 17-03-17 23:47:59.478 -07 000000475 INF: Y Motor: MoveYZ optimized starting. Moving Y to 67.3826 mm, moving Z to -0.13694 mm 17-03-17 23:47:59.478 -07 000000475 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 23:47:59.478 -07 000000623 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:47:59.488 -07 000000448 INF: Y Motor: Entering MoveAbsStepped (target = 107812 steps, sync = True, waitForSettling = True) 17-03-17 23:47:59.488 -07 000000415 INF: Z Motor: Entering MoveAbsStepped (DAC = 29915, sync = True, waitForSettling = False) 17-03-17 23:47:59.488 -07 000000415 INF: Z Motor: Moving to -0.136942 mm, started at -0.130249 mm, distance = -6.69 um 17-03-17 23:47:59.488 -07 000000415 INF: FPGA: Xmit ZDACW 29915\n [Z Motor] 17-03-17 23:47:59.488 -07 000000448 INF: Y Motor: Moving to 67.3826 mm, started at 66.5391 mm, delta = 0.8435 mm 17-03-17 23:47:59.488 -07 000000576 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:47:59.488 -07 000000623 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 3 ms overall 17-03-17 23:47:59.488 -07 000000576 INF: FPGA: Recv ZDACW 17-03-17 23:47:59.498 -07 000000415 INF: FPGA: 'ZDACW 29915' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:47:59.498 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:47:59.498 -07 000000618 INF: FPGA: Recv YRDPOS 136272 17-03-17 23:47:59.508 -07 000000623 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 23:47:59.508 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-17 23:47:59.508 -07 000000448 INF: Y Motor: Encoder = 136272 = motor step 106462.5 = 66.5391 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:47:59.508 -07 000000448 INF: Y Motor: Last commanded position = 66.5526 mm (106484.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 23:47:59.508 -07 000000448 INF: Y Motor: Moving 1350 steps-28 17-03-17 23:47:59.518 -07 000000415 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:47:59.518 -07 000000576 INF: FPGA: Recv ZDACR 29915 17-03-17 23:47:59.528 -07 000000415 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 30 ms overall 17-03-17 23:47:59.528 -07 000000415 INF: Z Motor: MoveAbsStepped took 39 ms (did NOT wait for settling yet)) 17-03-17 23:47:59.528 -07 000000448 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 23:47:59.568 -07 000000480 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 396 ms. 17-03-17 23:47:59.568 -07 000000480 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms. 17-03-17 23:47:59.568 -07 000000480 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:47:59.568 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 401 ms. 17-03-17 23:47:59.568 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 401 ms. 17-03-17 23:47:59.568 -07 000000459 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:47:59.568 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:47:59.578 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms. 17-03-17 23:47:59.578 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 409 ms. 17-03-17 23:47:59.578 -07 000000480 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 407 ms. 17-03-17 23:47:59.708 -07 000000415 INF: FPGA: Recv FOCMRRFOC 17-03-17 23:47:59.708 -07 000000623 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 221 ms overall 17-03-17 23:47:59.898 -07 000000576 INF: FPGA: Recv YMVTILE 17-03-17 23:47:59.898 -07 000000448 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 398 ms overall 17-03-17 23:47:59.948 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:47:59.948 -07 000000480 INF: FPGA: Recv YRDPOS 137978 17-03-17 23:47:59.958 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:47:59.958 -07 000000448 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:47:59.958 -07 000000448 INF: Y Motor: Position error before settling (table move) = -22 encoder counts (-0.011 mm) 17-03-17 23:47:59.958 -07 000000448 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 398 ms, distance = 0.844 mm, average velocity = 2.119 mm/sec 17-03-17 23:48:00.908 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:48:00.908 -07 000000623 INF: FPGA: Recv YRDPOS 137978 17-03-17 23:48:00.918 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:48:00.918 -07 000000448 INF: Y Motor: Encoder = 137978 = motor step 107795.3 = 67.3721 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:48:00.938 -07 000000448 INF: Y Motor: After move to 67.382607, error = -0.010536, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 23:48:00.938 -07 000000448 INF: Y Motor: Position error after settling (table move) = -22 encoder counts (-0.011 mm), Delta during settling = 0 counts (0.000 mm) 17-03-17 23:48:00.938 -07 000000448 INF: Y Motor: Moved to 67.3721 after 1455 ms (table move) 17-03-17 23:48:00.938 -07 000000475 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136942 mm (DAC = 29915) 17-03-17 23:48:00.938 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:00.948 -07 000000623 INF: FPGA: Recv ZSGSRD 30613 17-03-17 23:48:00.948 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall 17-03-17 23:48:00.948 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:00.948 -07 000000623 INF: FPGA: Recv ZSGSRD 30612 17-03-17 23:48:00.958 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:48:00.958 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:00.958 -07 000000448 INF: FPGA: Recv ZSGSRD 30609 17-03-17 23:48:00.968 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:00.968 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:00.968 -07 000000623 INF: FPGA: Recv ZSGSRD 30608 17-03-17 23:48:00.978 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:00.978 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:00.978 -07 000000623 INF: FPGA: Recv ZSGSRD 30606 17-03-17 23:48:00.988 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:00.988 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:00.988 -07 000000623 INF: FPGA: Recv ZSGSRD 30614 17-03-17 23:48:00.998 -07 000000475 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:00.998 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:00.998 -07 000000623 INF: FPGA: Recv ZSGSRD 30607 17-03-17 23:48:01.008 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:01.008 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:01.008 -07 000000623 INF: FPGA: Recv ZSGSRD 30602 17-03-17 23:48:01.018 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:01.018 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:01.018 -07 000000623 INF: FPGA: Recv ZSGSRD 30606 17-03-17 23:48:01.028 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:01.028 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:01.028 -07 000000623 INF: FPGA: Recv ZSGSRD 30613 17-03-17 23:48:01.038 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:01.038 -07 000000475 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:48:01.038 -07 000000623 INF: FPGA: Recv ZPIEZORD 26352 17-03-17 23:48:01.048 -07 000000475 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:01.048 -07 000000475 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.6 V, since DAC is at 4.565 V. Piezo Error = -9.4 V. 17-03-17 23:48:01.048 -07 000000475 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.9 um, Read 10 ADC samples: Avg = 30609 (-136.2 uncal um), Error = 0.8 uncal um, Median = 30608 (-136.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30602 (-136.1 uncal um), Max = 30614 (-136.2 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um) 17-03-17 23:48:01.048 -07 000000475 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30609, posNoise = 5, negNoise = 7 17-03-17 23:48:01.048 -07 000000475 INF: Z Motor: After move to -0.136942, error = -0.000020, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:48:01.048 -07 000000475 INF: Z Motor: Settle wait time = 1458 ms, measure time = 102 ms (allowed 150 ms), total time = 1560 ms 17-03-17 23:48:01.048 -07 000000475 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms 17-03-17 23:48:01.098 -07 000000475 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1612 ms 17-03-17 23:48:01.098 -07 000000475 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 23:48:01.098 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:48:01.098 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:48:01.098 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:48:01.098 -07 000000623 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:48:01.098 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 23:48:01.098 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:48:01.098 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-17 23:48:01.108 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 23:48:01.108 -07 000000475 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-17 23:48:01.108 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 23:48:01.118 -07 000000475 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms. 17-03-17 23:48:01.118 -07 000000475 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms. 17-03-17 23:48:01.118 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:48:01.168 -07 000000623 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 23:48:01.468 -07 000000475 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-17 23:48:01.468 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-17 23:48:01.468 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 23:48:01.468 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start. 17-03-17 23:48:01.498 -07 000000623 INF: FPGA: Recv @CAMSNAP 380 17-03-17 23:48:01.508 -07 000000448 INF: FPGA: Recv CAMSNAP 17-03-17 23:48:01.508 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall 17-03-17 23:48:01.588 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms. 17-03-17 23:48:01.598 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:48:01.598 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-17 23:48:01.598 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms. 17-03-17 23:48:01.608 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:48:01.608 -07 000000623 INF: Autofocus start 17-03-17 23:48:01.608 -07 000000623 INF: MeasureProfile start 17-03-17 23:48:01.608 -07 000000448 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:48:01.618 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 23:48:01.618 -07 000000475 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 23:48:01.618 -07 000000623 INF: MeasureProfile done 17-03-17 23:48:01.618 -07 000000623 INF: X=0 Z correction [um]=-0.02394831 17-03-17 23:48:01.618 -07 000000623 INF: Autofocus finished 17-03-17 23:48:01.818 -07 000000448 INF: FPGA: Recv FOCMRRIMG 17-03-17 23:48:01.818 -07 000000475 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 23:48:01.818 -07 000000610 INF: ------------ Scan Snapping tile 10 at Y-position 67.3720703125, Z-position -0.136962061458296. ---------- 17-03-17 23:48:01.818 -07 000000610 INF: Cycle 78 Tile 10 Exposure Settings A 1037 G 500 T 500 C 1037 17-03-17 23:48:01.818 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28422, sync = True, waitForSettling = True) 17-03-17 23:48:01.818 -07 000000610 INF: Z Motor: Moving to -0.130108 mm, started at -0.136962 mm, distance = 6.85 um 17-03-17 23:48:01.828 -07 000000610 INF: FPGA: Xmit ZDACW 28422\n [Z Motor] 17-03-17 23:48:01.828 -07 000000623 INF: FPGA: Recv ZDACW 17-03-17 23:48:01.838 -07 000000610 INF: FPGA: 'ZDACW 28422' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:48:01.838 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:48:01.838 -07 000000448 INF: FPGA: Recv ZDACR 28422 17-03-17 23:48:01.848 -07 000000610 INF: FPGA: 'ZDACR' command took 1 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:01.848 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:48:01.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:01.998 -07 000000623 INF: FPGA: Recv ZSGSRD 29541 17-03-17 23:48:02.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:48:02.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:02.008 -07 000000475 INF: FPGA: Recv ZSGSRD 29544 17-03-17 23:48:02.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:02.018 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:02.018 -07 000000623 INF: FPGA: Recv ZSGSRD 29551 17-03-17 23:48:02.028 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:02.028 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:02.028 -07 000000475 INF: FPGA: Recv ZSGSRD 29537 17-03-17 23:48:02.038 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:02.038 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:02.038 -07 000000541 INF: FPGA: Recv ZSGSRD 29546 17-03-17 23:48:02.048 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:02.048 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:02.048 -07 000000448 INF: FPGA: Recv ZSGSRD 29541 17-03-17 23:48:02.058 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:02.058 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:02.058 -07 000000541 INF: FPGA: Recv ZSGSRD 29550 17-03-17 23:48:02.068 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:02.068 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:02.068 -07 000000475 INF: FPGA: Recv ZSGSRD 29546 17-03-17 23:48:02.078 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:02.078 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:02.078 -07 000000448 INF: FPGA: Recv ZSGSRD 29537 17-03-17 23:48:02.088 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:02.088 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:02.088 -07 000000475 INF: FPGA: Recv ZSGSRD 29541 17-03-17 23:48:02.098 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:02.098 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:48:02.098 -07 000000623 INF: FPGA: Recv ZPIEZORD 25006 17-03-17 23:48:02.098 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:48:02.098 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 77. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1270, R2=1321, Total=2591. Warn if over 250 bubbles per interval. 17-03-17 23:48:02.108 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:02.108 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.4 V, since DAC is at 4.337 V. Piezo Error = -9.9 V. 17-03-17 23:48:02.108 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -130.1 um, Read 10 ADC samples: Avg = 29543 (-129.3 uncal um), Error = 0.8 uncal um, Median = 29542 (-129.3 uncal um), StdDev = 5 (0.0 uncal um), Range = 14 (0.1 uncal um), Min = 29537 (-129.3 uncal um), Max = 29551 (-129.4 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 6 (0.0 uncal um) 17-03-17 23:48:02.108 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29543, posNoise = 8, negNoise = 6 17-03-17 23:48:02.108 -07 000000610 INF: Z Motor: After move to -0.130108, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:48:02.108 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms) 17-03-17 23:48:02.108 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:48:02.108 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:48:02.108 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:48:02.108 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:48:02.108 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 23:48:02.108 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:48:02.108 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 23:48:02.108 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 23:48:02.108 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:48:02.108 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 23:48:02.108 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-17 23:48:02.108 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 23:48:02.108 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms. 17-03-17 23:48:02.108 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 23:48:02.118 -07 000000623 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms. 17-03-17 23:48:02.118 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 23:48:02.128 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms. 17-03-17 23:48:02.128 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms. 17-03-17 23:48:02.128 -07 000000623 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 13 ms. 17-03-17 23:48:02.128 -07 000000623 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms. 17-03-17 23:48:02.128 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 28599 150\n [Camera] 17-03-17 23:48:02.328 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 23:48:02.798 -07 000000623 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 78, FrontChillerTemperature: 4.02213, 17-03-17 23:48:03.368 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229 17-03-17 23:48:03.368 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229 17-03-17 23:48:03.368 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:48:03.378 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229 17-03-17 23:48:03.378 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229 17-03-17 23:48:03.378 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:48:03.378 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:48:03.378 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start. 17-03-17 23:48:03.378 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:48:03.378 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start. 17-03-17 23:48:03.558 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28599 1422 17-03-17 23:48:03.708 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572 17-03-17 23:48:03.768 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 385 ms. 17-03-17 23:48:03.768 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 386 ms. 17-03-17 23:48:03.768 -07 000000433 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:48:03.768 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:48:03.768 -07 000000448 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 393 ms. 17-03-17 23:48:03.768 -07 000000448 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms. 17-03-17 23:48:03.768 -07 000000448 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:48:03.778 -07 000000448 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:48:03.778 -07 000000448 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms. 17-03-17 23:48:03.778 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms. 17-03-17 23:48:04.208 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072 17-03-17 23:48:04.208 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072 17-03-17 23:48:04.208 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:48:04.218 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072 17-03-17 23:48:04.218 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072 17-03-17 23:48:04.218 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:48:04.218 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:48:04.218 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start. 17-03-17 23:48:04.228 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:48:04.228 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start. 17-03-17 23:48:04.398 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 2265 17-03-17 23:48:04.398 -07 000000448 INF: FPGA: Recv CAMDBLSNAP 17-03-17 23:48:04.408 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 28599 150' command took 2 ms to send, 2259 ms to get response, and 2272 ms overall 17-03-17 23:48:04.408 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-17 23:48:04.408 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 11 at Y-position 67.3720703125, Z-Position -0.130113851315179. ------ 17-03-17 23:48:04.408 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:48:04.408 -07 000000502 INF: Y Motor: MoveYZ optimized starting. Moving Y to 68.2126 mm, moving Z to -0.13657 mm 17-03-17 23:48:04.408 -07 000000502 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 23:48:04.408 -07 000000623 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:48:04.408 -07 000000448 INF: Y Motor: Entering MoveAbsStepped (target = 109140 steps, sync = True, waitForSettling = True) 17-03-17 23:48:04.408 -07 000000482 INF: Z Motor: Entering MoveAbsStepped (DAC = 29833, sync = True, waitForSettling = False) 17-03-17 23:48:04.408 -07 000000482 INF: Z Motor: Moving to -0.136567 mm, started at -0.130114 mm, distance = -6.45 um 17-03-17 23:48:04.408 -07 000000448 INF: Y Motor: Moving to 68.2126 mm, started at 67.3721 mm, delta = 0.8405 mm 17-03-17 23:48:04.418 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-17 23:48:04.418 -07 000000482 INF: FPGA: Xmit ZDACW 29833\n [Z Motor] 17-03-17 23:48:04.418 -07 000000623 INF: FPGA: Recv ZDACW 17-03-17 23:48:04.538 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:48:04.538 -07 000000482 INF: FPGA: 'ZDACW 29833' command took 0 ms to send, 0 ms to get response, and 121 ms overall 17-03-17 23:48:04.538 -07 000000623 INF: FPGA: Recv YRDPOS 137979 17-03-17 23:48:04.548 -07 000000541 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 23:48:04.548 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 130 ms overall 17-03-17 23:48:04.548 -07 000000448 INF: Y Motor: Encoder = 137979 = motor step 107796.1 = 67.3726 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:48:04.548 -07 000000448 INF: Y Motor: Last commanded position = 67.3826 mm (107812.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 23:48:04.548 -07 000000448 INF: Y Motor: Moving 1344 steps-22 17-03-17 23:48:04.568 -07 000000482 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:48:04.578 -07 000000448 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 23:48:04.618 -07 000000547 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 396 ms. 17-03-17 23:48:04.618 -07 000000547 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 397 ms. 17-03-17 23:48:04.618 -07 000000547 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:48:04.618 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 395 ms. 17-03-17 23:48:04.618 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms. 17-03-17 23:48:04.618 -07 000000433 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:48:04.618 -07 000000547 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:48:04.618 -07 000000547 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 408 ms. 17-03-17 23:48:04.628 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:48:04.628 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms. 17-03-17 23:48:05.208 -07 000000475 INF: FPGA: Recv ZDACR 29833 17-03-17 23:48:05.208 -07 000000475 INF: FPGA: Recv FOCMRRFOC 17-03-17 23:48:05.208 -07 000000475 INF: FPGA: Recv YMVTILE 17-03-17 23:48:05.208 -07 000000482 INF: FPGA: 'ZDACR' command took 0 ms to send, 630 ms to get response, and 669 ms overall 17-03-17 23:48:05.208 -07 000000482 INF: Z Motor: MoveAbsStepped took 792 ms (did NOT wait for settling yet)) 17-03-17 23:48:05.208 -07 000000448 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 621 ms to get response, and 657 ms overall 17-03-17 23:48:05.208 -07 000000541 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 651 ms to get response, and 791 ms overall 17-03-17 23:48:05.248 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:48:05.258 -07 000000486 INF: FPGA: Recv YRDPOS 139684 17-03-17 23:48:05.258 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-17 23:48:05.258 -07 000000448 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:48:05.258 -07 000000448 INF: Y Motor: Position error before settling (table move) = -15 encoder counts (-0.007 mm) 17-03-17 23:48:05.258 -07 000000448 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 657 ms, distance = 0.841 mm, average velocity = 1.279 mm/sec 17-03-17 23:48:06.208 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:48:06.208 -07 000000627 INF: FPGA: Recv YRDPOS 139684 17-03-17 23:48:06.218 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:06.218 -07 000000448 INF: Y Motor: Encoder = 139684 = motor step 109128.1 = 68.2051 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:48:06.238 -07 000000448 INF: Y Motor: After move to 68.212608, error = -0.007530, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 23:48:06.238 -07 000000448 INF: Y Motor: Position error after settling (table move) = -15 encoder counts (-0.007 mm), Delta during settling = 0 counts (0.000 mm) 17-03-17 23:48:06.238 -07 000000448 INF: Y Motor: Moved to 68.2051 after 1825 ms (table move) 17-03-17 23:48:06.238 -07 000000502 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136567 mm (DAC = 29833) 17-03-17 23:48:06.238 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:06.248 -07 000000482 INF: FPGA: Recv ZSGSRD 30543 17-03-17 23:48:06.248 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 1 ms to get response, and 2 ms overall 17-03-17 23:48:06.248 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:06.248 -07 000000475 INF: FPGA: Recv ZSGSRD 30553 17-03-17 23:48:06.258 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:48:06.258 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:06.258 -07 000000623 INF: FPGA: Recv ZSGSRD 30548 17-03-17 23:48:06.268 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:06.268 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:06.268 -07 000000627 INF: FPGA: Recv ZSGSRD 30548 17-03-17 23:48:06.278 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:06.278 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:06.278 -07 000000561 INF: FPGA: Recv ZSGSRD 30545 17-03-17 23:48:06.288 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:06.288 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:06.288 -07 000000482 INF: FPGA: Recv ZSGSRD 30546 17-03-17 23:48:06.298 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:06.298 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:06.298 -07 000000448 INF: FPGA: Recv ZSGSRD 30555 17-03-17 23:48:06.308 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:06.308 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:06.308 -07 000000541 INF: FPGA: Recv ZSGSRD 30547 17-03-17 23:48:06.318 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:06.318 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:06.318 -07 000000561 INF: FPGA: Recv ZSGSRD 30548 17-03-17 23:48:06.328 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:06.328 -07 000000502 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:06.328 -07 000000482 INF: FPGA: Recv ZSGSRD 30550 17-03-17 23:48:06.338 -07 000000502 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:06.338 -07 000000502 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:48:06.338 -07 000000623 INF: FPGA: Recv ZPIEZORD 26350 17-03-17 23:48:06.348 -07 000000502 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:06.348 -07 000000502 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.552 V. Piezo Error = -9.2 V. 17-03-17 23:48:06.348 -07 000000502 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.6 um, Read 10 ADC samples: Avg = 30548 (-135.8 uncal um), Error = 0.8 uncal um, Median = 30548 (-135.8 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30543 (-135.7 uncal um), Max = 30555 (-135.8 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 5 (0.0 uncal um) 17-03-17 23:48:06.348 -07 000000502 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30548, posNoise = 7, negNoise = 5 17-03-17 23:48:06.348 -07 000000502 INF: Z Motor: After move to -0.136567, error = -0.000003, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:48:06.348 -07 000000502 INF: Z Motor: Settle wait time = 1829 ms, measure time = 102 ms (allowed 150 ms), total time = 1931 ms 17-03-17 23:48:06.348 -07 000000502 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms 17-03-17 23:48:06.398 -07 000000502 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1985 ms 17-03-17 23:48:06.398 -07 000000502 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 23:48:06.398 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:48:06.398 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:48:06.398 -07 000000475 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:48:06.398 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:48:06.398 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 23:48:06.398 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:48:06.398 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:48:06.398 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 23:48:06.408 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-17 23:48:06.408 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 23:48:06.418 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms. 17-03-17 23:48:06.418 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms. 17-03-17 23:48:06.418 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:48:06.468 -07 000000475 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 23:48:06.768 -07 000000623 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-17 23:48:06.768 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-17 23:48:06.768 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 23:48:06.768 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start. 17-03-17 23:48:06.808 -07 000000541 INF: FPGA: Recv @CAMSNAP 380 17-03-17 23:48:06.808 -07 000000627 INF: FPGA: Recv CAMSNAP 17-03-17 23:48:06.808 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 381 ms to get response, and 384 ms overall 17-03-17 23:48:06.888 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 122 ms. 17-03-17 23:48:06.888 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:48:06.888 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-17 23:48:06.888 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 125 ms. 17-03-17 23:48:06.908 -07 000000502 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:48:06.908 -07 000000475 INF: Autofocus start 17-03-17 23:48:06.908 -07 000000475 INF: MeasureProfile start 17-03-17 23:48:06.908 -07 000000623 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:48:06.918 -07 000000502 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-17 23:48:06.918 -07 000000502 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 23:48:06.918 -07 000000475 INF: MeasureProfile done 17-03-17 23:48:06.918 -07 000000475 INF: X=0 Z correction [um]=-0.02394831 17-03-17 23:48:06.918 -07 000000475 INF: Autofocus finished 17-03-17 23:48:07.098 -07 000000482 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:48:07.098 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 77. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1270, R2=1321, Total=2591. Warn if over 250 bubbles per interval. 17-03-17 23:48:07.118 -07 000000627 INF: FPGA: Recv FOCMRRIMG 17-03-17 23:48:07.118 -07 000000502 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 23:48:07.118 -07 000000610 INF: ------------ Scan Snapping tile 11 at Y-position 68.205078125, Z-position -0.136570184517649. ---------- 17-03-17 23:48:07.118 -07 000000610 INF: Cycle 78 Tile 11 Exposure Settings A 1037 G 500 T 500 C 1037 17-03-17 23:48:07.128 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28341, sync = True, waitForSettling = True) 17-03-17 23:48:07.128 -07 000000610 INF: Z Motor: Moving to -0.129737 mm, started at -0.136570 mm, distance = 6.83 um 17-03-17 23:48:07.128 -07 000000610 INF: FPGA: Xmit ZDACW 28341\n [Z Motor] 17-03-17 23:48:07.128 -07 000000475 INF: FPGA: Recv ZDACW 17-03-17 23:48:07.138 -07 000000610 INF: FPGA: 'ZDACW 28341' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:48:07.138 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:48:07.138 -07 000000561 INF: FPGA: Recv ZDACR 28341 17-03-17 23:48:07.148 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:07.148 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:48:07.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:07.298 -07 000000623 INF: FPGA: Recv ZSGSRD 29487 17-03-17 23:48:07.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:48:07.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:07.308 -07 000000486 INF: FPGA: Recv ZSGSRD 29481 17-03-17 23:48:07.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:07.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:07.318 -07 000000482 INF: FPGA: Recv ZSGSRD 29489 17-03-17 23:48:07.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:07.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:07.328 -07 000000627 INF: FPGA: Recv ZSGSRD 29481 17-03-17 23:48:07.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:07.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:07.338 -07 000000486 INF: FPGA: Recv ZSGSRD 29484 17-03-17 23:48:07.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:07.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:07.348 -07 000000482 INF: FPGA: Recv ZSGSRD 29491 17-03-17 23:48:07.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:07.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:07.358 -07 000000448 INF: FPGA: Recv ZSGSRD 29483 17-03-17 23:48:07.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:07.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:07.368 -07 000000475 INF: FPGA: Recv ZSGSRD 29486 17-03-17 23:48:07.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:07.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:07.378 -07 000000502 INF: FPGA: Recv ZSGSRD 29484 17-03-17 23:48:07.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:07.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:07.388 -07 000000482 INF: FPGA: Recv ZSGSRD 29486 17-03-17 23:48:07.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:07.398 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:48:07.398 -07 000000561 INF: FPGA: Recv ZPIEZORD 24975 17-03-17 23:48:07.408 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:07.408 -07 000000610 INF: Z Motor: Piezo is near 33.4 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.325 V. Piezo Error = -9.9 V. 17-03-17 23:48:07.408 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.7 um, Read 10 ADC samples: Avg = 29485 (-129.0 uncal um), Error = 0.8 uncal um, Median = 29485 (-129.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 10 (0.1 uncal um), Min = 29481 (-128.9 uncal um), Max = 29491 (-129.0 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um) 17-03-17 23:48:07.408 -07 000000610 INF: Z Motor: ADC noise = 6, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29485, posNoise = 6, negNoise = 4 17-03-17 23:48:07.408 -07 000000610 INF: Z Motor: After move to -0.129737, error = -0.000004, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:48:07.408 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms) 17-03-17 23:48:07.408 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:48:07.408 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:48:07.408 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:48:07.408 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:48:07.408 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 23:48:07.408 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:48:07.408 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 23:48:07.408 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 23:48:07.408 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:48:07.408 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 23:48:07.408 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-17 23:48:07.408 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 23:48:07.418 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms. 17-03-17 23:48:07.418 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 23:48:07.418 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms. 17-03-17 23:48:07.418 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 23:48:07.428 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms. 17-03-17 23:48:07.428 -07 000000541 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 19 ms. 17-03-17 23:48:07.428 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms. 17-03-17 23:48:07.428 -07 000000475 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms. 17-03-17 23:48:07.438 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 28517 150\n [Camera] 17-03-17 23:48:07.638 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 23:48:08.158 -07 000000502 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 78, FrontChillerTemperature: 3.977204, 17-03-17 23:48:08.678 -07 000000623 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1232 17-03-17 23:48:08.678 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1232 17-03-17 23:48:08.678 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:48:08.678 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:48:08.678 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start. 17-03-17 23:48:08.678 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1232 17-03-17 23:48:08.678 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1232 17-03-17 23:48:08.678 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:48:08.688 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:48:08.688 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start. 17-03-17 23:48:08.868 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28517 1422 17-03-17 23:48:09.018 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572 17-03-17 23:48:09.068 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 393 ms. 17-03-17 23:48:09.068 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms. 17-03-17 23:48:09.068 -07 000000618 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:48:09.078 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:48:09.078 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms. 17-03-17 23:48:09.078 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 394 ms. 17-03-17 23:48:09.078 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms. 17-03-17 23:48:09.078 -07 000000623 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:48:09.088 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:48:09.088 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 409 ms. 17-03-17 23:48:09.518 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072 17-03-17 23:48:09.518 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072 17-03-17 23:48:09.518 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:48:09.518 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:48:09.518 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) start. 17-03-17 23:48:09.518 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072 17-03-17 23:48:09.518 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072 17-03-17 23:48:09.518 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:48:09.518 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:48:09.518 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start. 17-03-17 23:48:09.708 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP 2264 17-03-17 23:48:09.708 -07 000000486 INF: FPGA: Recv CAMDBLSNAP 17-03-17 23:48:09.708 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 28517 150' command took 2 ms to send, 2262 ms to get response, and 2272 ms overall 17-03-17 23:48:09.708 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-17 23:48:09.708 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 12 at Y-position 68.205078125, Z-Position -0.129741247010957. ------ 17-03-17 23:48:09.708 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:48:09.708 -07 000000541 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.0426 mm, moving Z to -0.13642 mm 17-03-17 23:48:09.708 -07 000000541 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 23:48:09.718 -07 000000618 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:48:09.718 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-17 23:48:09.718 -07 000000627 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 23:48:09.718 -07 000000486 INF: Z Motor: Entering MoveAbsStepped (DAC = 29802, sync = True, waitForSettling = False) 17-03-17 23:48:09.718 -07 000000486 INF: Z Motor: Moving to -0.136425 mm, started at -0.129741 mm, distance = -6.68 um 17-03-17 23:48:09.718 -07 000000482 INF: Y Motor: Entering MoveAbsStepped (target = 110468 steps, sync = True, waitForSettling = True) 17-03-17 23:48:09.718 -07 000000482 INF: Y Motor: Moving to 69.0426 mm, started at 68.2051 mm, delta = 0.8375 mm 17-03-17 23:48:09.728 -07 000000486 INF: FPGA: Xmit ZDACW 29802\n [Z Motor] 17-03-17 23:48:09.728 -07 000000438 INF: FPGA: Recv ZDACW 17-03-17 23:48:09.738 -07 000000486 INF: FPGA: 'ZDACW 29802' command took 0 ms to send, 0 ms to get response, and 17 ms overall 17-03-17 23:48:09.738 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:48:09.738 -07 000000438 INF: FPGA: Recv YRDPOS 139685 17-03-17 23:48:09.748 -07 000000486 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:48:09.748 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 26 ms overall 17-03-17 23:48:09.748 -07 000000482 INF: Y Motor: Encoder = 139685 = motor step 109128.9 = 68.2056 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:48:09.748 -07 000000475 INF: FPGA: Recv ZDACR 29802 17-03-17 23:48:09.748 -07 000000482 INF: Y Motor: Last commanded position = 68.2126 mm (109140.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 23:48:09.748 -07 000000482 INF: Y Motor: Moving 1339 steps-15 17-03-17 23:48:09.758 -07 000000486 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-17 23:48:09.758 -07 000000486 INF: Z Motor: MoveAbsStepped took 37 ms (did NOT wait for settling yet)) 17-03-17 23:48:09.758 -07 000000482 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 23:48:09.908 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) end. Duration was 394 ms. 17-03-17 23:48:09.908 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 395 ms. 17-03-17 23:48:09.908 -07 000000502 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:48:09.908 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 393 ms. 17-03-17 23:48:09.908 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms. 17-03-17 23:48:09.908 -07 000000561 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:48:09.918 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:48:09.918 -07 000000486 INF: FPGA: Recv FOCMRRFOC 17-03-17 23:48:09.918 -07 000000627 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 194 ms to get response, and 202 ms overall 17-03-17 23:48:09.918 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms. 17-03-17 23:48:09.918 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms. 17-03-17 23:48:09.918 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms. 17-03-17 23:48:10.128 -07 000000576 INF: FPGA: Recv YMVTILE 17-03-17 23:48:10.128 -07 000000482 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 384 ms overall 17-03-17 23:48:10.178 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:48:10.178 -07 000000512 INF: FPGA: Recv YRDPOS 141368 17-03-17 23:48:10.188 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:48:10.188 -07 000000482 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:48:10.188 -07 000000482 INF: Y Motor: Position error before settling (table move) = -31 encoder counts (-0.015 mm) 17-03-17 23:48:10.188 -07 000000482 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 384 ms, distance = 0.838 mm, average velocity = 2.181 mm/sec 17-03-17 23:48:11.138 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:48:11.138 -07 000000502 INF: FPGA: Recv YRDPOS 141368 17-03-17 23:48:11.148 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:48:11.148 -07 000000482 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:48:11.168 -07 000000482 INF: Y Motor: After move to 69.042610, error = -0.015266, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 23:48:11.168 -07 000000482 INF: Y Motor: Position error after settling (table move) = -31 encoder counts (-0.015 mm), Delta during settling = 0 counts (0.000 mm) 17-03-17 23:48:11.168 -07 000000482 INF: Y Motor: Moved to 69.0273 after 1453 ms (table move) 17-03-17 23:48:11.168 -07 000000541 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136425 mm (DAC = 29802) 17-03-17 23:48:11.168 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:11.178 -07 000000409 INF: FPGA: Recv ZSGSRD 30528 17-03-17 23:48:11.188 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:48:11.188 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:11.188 -07 000000576 INF: FPGA: Recv ZSGSRD 30531 17-03-17 23:48:11.198 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:11.198 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:11.198 -07 000000438 INF: FPGA: Recv ZSGSRD 30530 17-03-17 23:48:11.208 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:11.208 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:11.208 -07 000000448 INF: FPGA: Recv ZSGSRD 30524 17-03-17 23:48:11.218 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:11.218 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:11.218 -07 000000409 INF: FPGA: Recv ZSGSRD 30525 17-03-17 23:48:11.228 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:11.228 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:11.228 -07 000000576 INF: FPGA: Recv ZSGSRD 30530 17-03-17 23:48:11.238 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:48:11.238 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:11.238 -07 000000618 INF: FPGA: Recv ZSGSRD 30527 17-03-17 23:48:11.248 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:11.248 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:11.248 -07 000000512 INF: FPGA: Recv ZSGSRD 30519 17-03-17 23:48:11.258 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:11.258 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:11.258 -07 000000475 INF: FPGA: Recv ZSGSRD 30525 17-03-17 23:48:11.268 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:11.268 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:11.268 -07 000000438 INF: FPGA: Recv ZSGSRD 30529 17-03-17 23:48:11.278 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:11.278 -07 000000541 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:48:11.278 -07 000000475 INF: FPGA: Recv ZPIEZORD 26357 17-03-17 23:48:11.288 -07 000000541 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:11.288 -07 000000541 INF: Z Motor: Piezo is near 36.3 V (nominally 0 to 100 V), expect near 45.5 V, since DAC is at 4.547 V. Piezo Error = -9.2 V. 17-03-17 23:48:11.288 -07 000000541 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.4 um, Read 10 ADC samples: Avg = 30527 (-135.6 uncal um), Error = 0.8 uncal um, Median = 30528 (-135.6 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 30519 (-135.6 uncal um), Max = 30531 (-135.7 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um) 17-03-17 23:48:11.288 -07 000000541 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30527, posNoise = 4, negNoise = 8 17-03-17 23:48:11.288 -07 000000541 INF: Z Motor: After move to -0.136425, error = -0.000010, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:48:11.288 -07 000000541 INF: Z Motor: Settle wait time = 1457 ms, measure time = 111 ms (allowed 150 ms), total time = 1568 ms 17-03-17 23:48:11.288 -07 000000541 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms 17-03-17 23:48:11.328 -07 000000541 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1612 ms 17-03-17 23:48:11.328 -07 000000541 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 23:48:11.328 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:48:11.328 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:48:11.328 -07 000000475 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:48:11.328 -07 000000482 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:48:11.328 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 23:48:11.328 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:48:11.328 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:48:11.338 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 23:48:11.338 -07 000000438 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms. 17-03-17 23:48:11.338 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 23:48:11.348 -07 000000438 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 9 ms. 17-03-17 23:48:11.348 -07 000000438 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 14 ms. 17-03-17 23:48:11.348 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:48:11.398 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 23:48:11.698 -07 000000486 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-17 23:48:11.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-17 23:48:11.698 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 23:48:11.698 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 615841328, 0x0, 559484976) start. 17-03-17 23:48:11.728 -07 000000438 INF: FPGA: Recv @CAMSNAP 380 17-03-17 23:48:11.738 -07 000000475 INF: FPGA: Recv CAMSNAP 17-03-17 23:48:11.738 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall 17-03-17 23:48:11.818 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 615841328, 0x0, 559484976) end. Duration was 126 ms. 17-03-17 23:48:11.818 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:48:11.828 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-17 23:48:11.828 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms. 17-03-17 23:48:11.838 -07 000000486 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:48:11.838 -07 000000438 INF: Autofocus start 17-03-17 23:48:11.838 -07 000000438 INF: MeasureProfile start 17-03-17 23:48:11.838 -07 000000627 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:48:11.848 -07 000000486 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 23:48:11.848 -07 000000486 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 23:48:11.848 -07 000000438 INF: MeasureProfile done 17-03-17 23:48:11.848 -07 000000438 INF: X=16 Z correction [um]=0.0530179 17-03-17 23:48:11.848 -07 000000438 INF: Autofocus finished 17-03-17 23:48:12.048 -07 000000512 INF: FPGA: Recv FOCMRRIMG 17-03-17 23:48:12.048 -07 000000486 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 23:48:12.048 -07 000000610 INF: ------------ Scan Snapping tile 12 at Y-position 69.02734375, Z-position -0.136435276062672. ---------- 17-03-17 23:48:12.048 -07 000000610 INF: Cycle 78 Tile 12 Exposure Settings A 1037 G 500 T 500 C 1037 17-03-17 23:48:12.058 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28326, sync = True, waitForSettling = True) 17-03-17 23:48:12.058 -07 000000610 INF: Z Motor: Moving to -0.129668 mm, started at -0.136435 mm, distance = 6.77 um 17-03-17 23:48:12.058 -07 000000610 INF: FPGA: Xmit ZDACW 28326\n [Z Motor] 17-03-17 23:48:12.058 -07 000000618 INF: FPGA: Recv ZDACW 17-03-17 23:48:12.068 -07 000000610 INF: FPGA: 'ZDACW 28326' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:12.068 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:48:12.068 -07 000000541 INF: FPGA: Recv ZDACR 28326 17-03-17 23:48:12.078 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:12.078 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:48:12.098 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:48:12.098 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 77. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1270, R2=1321, Total=2591. Warn if over 250 bubbles per interval. 17-03-17 23:48:12.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:12.228 -07 000000482 INF: FPGA: Recv ZSGSRD 29475 17-03-17 23:48:12.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:48:12.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:12.238 -07 000000627 INF: FPGA: Recv ZSGSRD 29472 17-03-17 23:48:12.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:12.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:12.248 -07 000000486 INF: FPGA: Recv ZSGSRD 29474 17-03-17 23:48:12.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:12.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:12.258 -07 000000541 INF: FPGA: Recv ZSGSRD 29472 17-03-17 23:48:12.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:12.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:12.268 -07 000000618 INF: FPGA: Recv ZSGSRD 29474 17-03-17 23:48:12.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:12.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:12.278 -07 000000541 INF: FPGA: Recv ZSGSRD 29478 17-03-17 23:48:12.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:12.288 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:12.288 -07 000000438 INF: FPGA: Recv ZSGSRD 29474 17-03-17 23:48:12.298 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:12.298 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:12.298 -07 000000475 INF: FPGA: Recv ZSGSRD 29477 17-03-17 23:48:12.308 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:12.308 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:12.308 -07 000000541 INF: FPGA: Recv ZSGSRD 29471 17-03-17 23:48:12.318 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:12.318 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:12.318 -07 000000618 INF: FPGA: Recv ZSGSRD 29474 17-03-17 23:48:12.328 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:12.328 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:48:12.328 -07 000000512 INF: FPGA: Recv ZPIEZORD 24964 17-03-17 23:48:12.338 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:12.338 -07 000000610 INF: Z Motor: Piezo is near 33.3 V (nominally 0 to 100 V), expect near 43.2 V, since DAC is at 4.322 V. Piezo Error = -9.9 V. 17-03-17 23:48:12.338 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.7 um, Read 10 ADC samples: Avg = 29474 (-128.9 uncal um), Error = 0.8 uncal um, Median = 29474 (-128.9 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 29471 (-128.9 uncal um), Max = 29478 (-128.9 uncal um), Pos Noise = 4 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um) 17-03-17 23:48:12.338 -07 000000610 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29474, posNoise = 4, negNoise = 3 17-03-17 23:48:12.338 -07 000000610 INF: Z Motor: After move to -0.129668, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:48:12.338 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms) 17-03-17 23:48:12.338 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:48:12.338 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:48:12.338 -07 000000618 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:48:12.338 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 23:48:12.338 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 23:48:12.338 -07 000000486 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:48:12.338 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 23:48:12.338 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:48:12.338 -07 000000512 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-17 23:48:12.338 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 23:48:12.338 -07 000000482 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:48:12.338 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 23:48:12.348 -07 000000482 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-17 23:48:12.348 -07 000000512 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 4 ms. 17-03-17 23:48:12.348 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 23:48:12.348 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 23:48:12.358 -07 000000482 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms. 17-03-17 23:48:12.358 -07 000000482 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms. 17-03-17 23:48:12.358 -07 000000512 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms. 17-03-17 23:48:12.358 -07 000000512 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 22 ms. 17-03-17 23:48:12.368 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 28503 150\n [Camera] 17-03-17 23:48:12.568 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 23:48:13.518 -07 000000618 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 78, FrontChillerTemperature: 3.959467, 17-03-17 23:48:13.598 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229 17-03-17 23:48:13.598 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229 17-03-17 23:48:13.598 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:48:13.598 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:48:13.598 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start. 17-03-17 23:48:13.608 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229 17-03-17 23:48:13.608 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229 17-03-17 23:48:13.608 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:48:13.608 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:48:13.608 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start. 17-03-17 23:48:13.798 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28503 1422 17-03-17 23:48:13.948 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572 17-03-17 23:48:13.998 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 400 ms. 17-03-17 23:48:13.998 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms. 17-03-17 23:48:13.998 -07 000000627 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:48:14.008 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 400 ms. 17-03-17 23:48:14.008 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms. 17-03-17 23:48:14.008 -07 000000618 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:48:14.008 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:48:14.008 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 404 ms. 17-03-17 23:48:14.008 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:48:14.018 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms. 17-03-17 23:48:14.448 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072 17-03-17 23:48:14.448 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072 17-03-17 23:48:14.448 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:48:14.448 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:48:14.448 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start. 17-03-17 23:48:14.448 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072 17-03-17 23:48:14.448 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072 17-03-17 23:48:14.448 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:48:14.448 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:48:14.448 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start. 17-03-17 23:48:14.638 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP 2264 17-03-17 23:48:14.638 -07 000000482 INF: FPGA: Recv CAMDBLSNAP 17-03-17 23:48:14.638 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 28503 150' command took 2 ms to send, 2262 ms to get response, and 2272 ms overall 17-03-17 23:48:14.638 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-17 23:48:14.638 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 13 at Y-position 69.02734375, Z-Position -0.129670580677397. ------ 17-03-17 23:48:14.638 -07 000000627 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:48:14.638 -07 000000618 INF: Y Motor: MoveYZ optimized starting. Moving Y to 69.8726 mm, moving Z to -0.13601 mm 17-03-17 23:48:14.638 -07 000000618 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 23:48:14.648 -07 000000512 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:48:14.648 -07 000000482 INF: Y Motor: Entering MoveAbsStepped (target = 111796 steps, sync = True, waitForSettling = True) 17-03-17 23:48:14.648 -07 000000482 INF: Y Motor: Moving to 69.8726 mm, started at 69.0273 mm, delta = 0.8453 mm 17-03-17 23:48:14.648 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:48:14.648 -07 000000475 INF: Z Motor: Entering MoveAbsStepped (DAC = 29710, sync = True, waitForSettling = False) 17-03-17 23:48:14.648 -07 000000475 INF: Z Motor: Moving to -0.136004 mm, started at -0.129671 mm, distance = -6.33 um 17-03-17 23:48:14.648 -07 000000627 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-17 23:48:14.648 -07 000000459 INF: FPGA: Recv YRDPOS 141368 17-03-17 23:48:14.658 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:48:14.658 -07 000000475 INF: FPGA: Xmit ZDACW 29710\n [Z Motor] 17-03-17 23:48:14.658 -07 000000482 INF: Y Motor: Encoder = 141368 = motor step 110443.8 = 69.0273 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:48:14.658 -07 000000482 INF: Y Motor: Last commanded position = 69.0426 mm (110468.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 23:48:14.658 -07 000000482 INF: Y Motor: Moving 1352 steps-31 17-03-17 23:48:14.658 -07 000000512 INF: FPGA: Recv ZDACW 17-03-17 23:48:14.668 -07 000000627 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 23:48:14.668 -07 000000475 INF: FPGA: 'ZDACW 29710' command took 0 ms to send, 0 ms to get response, and 18 ms overall 17-03-17 23:48:14.678 -07 000000482 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 23:48:14.688 -07 000000475 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:48:14.688 -07 000000459 INF: FPGA: Recv ZDACR 29710 17-03-17 23:48:14.698 -07 000000475 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-17 23:48:14.698 -07 000000475 INF: Z Motor: MoveAbsStepped took 48 ms (did NOT wait for settling yet)) 17-03-17 23:48:14.838 -07 000000486 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 390 ms. 17-03-17 23:48:14.838 -07 000000486 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 391 ms. 17-03-17 23:48:14.838 -07 000000486 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:48:14.838 -07 000000438 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 393 ms. 17-03-17 23:48:14.838 -07 000000438 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms. 17-03-17 23:48:14.838 -07 000000438 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:48:14.838 -07 000000486 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:48:14.848 -07 000000438 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms. 17-03-17 23:48:14.848 -07 000000438 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms. 17-03-17 23:48:14.848 -07 000000486 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 401 ms. 17-03-17 23:48:14.868 -07 000000438 INF: FPGA: Recv FOCMRRFOC 17-03-17 23:48:14.868 -07 000000627 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 220 ms overall 17-03-17 23:48:15.048 -07 000000459 INF: FPGA: Recv YMVTILE 17-03-17 23:48:15.048 -07 000000482 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 397 ms overall 17-03-17 23:48:15.088 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:48:15.098 -07 000000547 INF: FPGA: Recv YRDPOS 143080 17-03-17 23:48:15.098 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 3 ms overall 17-03-17 23:48:15.098 -07 000000482 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:48:15.098 -07 000000482 INF: Y Motor: Position error before settling (table move) = -19 encoder counts (-0.009 mm) 17-03-17 23:48:15.098 -07 000000482 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 397 ms, distance = 0.845 mm, average velocity = 2.129 mm/sec 17-03-17 23:48:16.048 -07 000000482 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:48:16.048 -07 000000627 INF: FPGA: Recv YRDPOS 143080 17-03-17 23:48:16.058 -07 000000482 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:16.058 -07 000000482 INF: Y Motor: Encoder = 143080 = motor step 111781.3 = 69.8633 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:48:16.078 -07 000000482 INF: Y Motor: After move to 69.872612, error = -0.009331, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 23:48:16.078 -07 000000482 INF: Y Motor: Position error after settling (table move) = -19 encoder counts (-0.009 mm), Delta during settling = 0 counts (0.000 mm) 17-03-17 23:48:16.078 -07 000000482 INF: Y Motor: Moved to 69.8633 after 1436 ms (table move) 17-03-17 23:48:16.088 -07 000000618 INF: Z Motor: EndOfMoveAbsStepped: target = -0.136004 mm (DAC = 29710) 17-03-17 23:48:16.088 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:16.088 -07 000000482 INF: FPGA: Recv ZSGSRD 30464 17-03-17 23:48:16.098 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:48:16.098 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:16.098 -07 000000438 INF: FPGA: Recv ZSGSRD 30455 17-03-17 23:48:16.108 -07 000000618 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:16.108 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:16.108 -07 000000438 INF: FPGA: Recv ZSGSRD 30453 17-03-17 23:48:16.118 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:16.118 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:16.118 -07 000000438 INF: FPGA: Recv ZSGSRD 30466 17-03-17 23:48:16.128 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:16.128 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:16.128 -07 000000438 INF: FPGA: Recv ZSGSRD 30465 17-03-17 23:48:16.138 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:16.138 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:16.138 -07 000000438 INF: FPGA: Recv ZSGSRD 30460 17-03-17 23:48:16.148 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:16.148 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:16.148 -07 000000438 INF: FPGA: Recv ZSGSRD 30464 17-03-17 23:48:16.158 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:16.158 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:16.158 -07 000000438 INF: FPGA: Recv ZSGSRD 30455 17-03-17 23:48:16.168 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:16.168 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:16.168 -07 000000438 INF: FPGA: Recv ZSGSRD 30459 17-03-17 23:48:16.178 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:16.178 -07 000000618 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:16.178 -07 000000438 INF: FPGA: Recv ZSGSRD 30461 17-03-17 23:48:16.188 -07 000000618 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:16.188 -07 000000618 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:48:16.188 -07 000000438 INF: FPGA: Recv ZPIEZORD 26290 17-03-17 23:48:16.198 -07 000000618 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:16.198 -07 000000618 INF: Z Motor: Piezo is near 36.2 V (nominally 0 to 100 V), expect near 45.3 V, since DAC is at 4.533 V. Piezo Error = -9.2 V. 17-03-17 23:48:16.198 -07 000000618 INF: Z Motor: ReadAdcAverage: Commanded Z = -136.0 um, Read 10 ADC samples: Avg = 30460 (-135.2 uncal um), Error = 0.8 uncal um, Median = 30460 (-135.2 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30453 (-135.2 uncal um), Max = 30466 (-135.3 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um) 17-03-17 23:48:16.198 -07 000000618 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30460, posNoise = 6, negNoise = 7 17-03-17 23:48:16.198 -07 000000618 INF: Z Motor: After move to -0.136004, error = -0.000001, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:48:16.198 -07 000000618 INF: Z Motor: Settle wait time = 1440 ms, measure time = 108 ms (allowed 150 ms), total time = 1548 ms 17-03-17 23:48:16.198 -07 000000618 INF: Z Motor: Waiting extra 42 ms after reading position to reach expected total of 150 ms 17-03-17 23:48:16.248 -07 000000618 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1602 ms 17-03-17 23:48:16.248 -07 000000618 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 23:48:16.248 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:48:16.248 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:48:16.248 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:48:16.248 -07 000000459 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:48:16.248 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 23:48:16.248 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:48:16.248 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:48:16.248 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 23:48:16.258 -07 000000480 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms. 17-03-17 23:48:16.258 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 23:48:16.258 -07 000000480 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 6 ms. 17-03-17 23:48:16.258 -07 000000480 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms. 17-03-17 23:48:16.268 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:48:16.308 -07 000000547 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 23:48:16.608 -07 000000547 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-17 23:48:16.608 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-17 23:48:16.608 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 23:48:16.608 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start. 17-03-17 23:48:16.648 -07 000000438 INF: FPGA: Recv @CAMSNAP 380 17-03-17 23:48:16.648 -07 000000480 INF: FPGA: Recv CAMSNAP 17-03-17 23:48:16.648 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 384 ms overall 17-03-17 23:48:16.728 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 116 ms. 17-03-17 23:48:16.728 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:48:16.728 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-17 23:48:16.728 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 118 ms. 17-03-17 23:48:16.748 -07 000000459 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:48:16.748 -07 000000382 INF: Autofocus start 17-03-17 23:48:16.748 -07 000000382 INF: MeasureProfile start 17-03-17 23:48:16.748 -07 000000618 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:48:16.758 -07 000000459 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-17 23:48:16.758 -07 000000459 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 23:48:16.758 -07 000000382 INF: MeasureProfile done 17-03-17 23:48:16.758 -07 000000382 INF: X=0 Z correction [um]=-0.02394831 17-03-17 23:48:16.758 -07 000000382 INF: Autofocus finished 17-03-17 23:48:16.958 -07 000000486 INF: FPGA: Recv FOCMRRIMG 17-03-17 23:48:16.958 -07 000000459 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 23:48:16.958 -07 000000610 INF: ------------ Scan Snapping tile 13 at Y-position 69.86328125, Z-position -0.136004853849174. ---------- 17-03-17 23:48:16.958 -07 000000610 INF: Cycle 78 Tile 13 Exposure Settings A 1037 G 500 T 500 C 1037 17-03-17 23:48:16.968 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28218, sync = True, waitForSettling = True) 17-03-17 23:48:16.968 -07 000000610 INF: Z Motor: Moving to -0.129174 mm, started at -0.136005 mm, distance = 6.83 um 17-03-17 23:48:16.968 -07 000000610 INF: FPGA: Xmit ZDACW 28218\n [Z Motor] 17-03-17 23:48:16.968 -07 000000459 INF: FPGA: Recv ZDACW 17-03-17 23:48:16.978 -07 000000610 INF: FPGA: 'ZDACW 28218' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:48:16.978 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:48:16.978 -07 000000541 INF: FPGA: Recv ZDACR 28218 17-03-17 23:48:16.988 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:16.988 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:48:17.098 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:48:17.098 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 77. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1270, R2=1321, Total=2591. Warn if over 250 bubbles per interval. 17-03-17 23:48:17.138 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:17.138 -07 000000480 INF: FPGA: Recv ZSGSRD 29397 17-03-17 23:48:17.148 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:48:17.148 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:17.148 -07 000000382 INF: FPGA: Recv ZSGSRD 29398 17-03-17 23:48:17.158 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:17.158 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:17.158 -07 000000480 INF: FPGA: Recv ZSGSRD 29397 17-03-17 23:48:17.168 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:17.168 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:17.168 -07 000000382 INF: FPGA: Recv ZSGSRD 29395 17-03-17 23:48:17.178 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:17.178 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:17.178 -07 000000541 INF: FPGA: Recv ZSGSRD 29398 17-03-17 23:48:17.188 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:17.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:17.188 -07 000000475 INF: FPGA: Recv ZSGSRD 29397 17-03-17 23:48:17.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:17.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:17.198 -07 000000541 INF: FPGA: Recv ZSGSRD 29396 17-03-17 23:48:17.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:17.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:17.208 -07 000000627 INF: FPGA: Recv ZSGSRD 29399 17-03-17 23:48:17.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:17.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:17.218 -07 000000438 INF: FPGA: Recv ZSGSRD 29391 17-03-17 23:48:17.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:17.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:17.228 -07 000000482 INF: FPGA: Recv ZSGSRD 29404 17-03-17 23:48:17.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:17.238 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:48:17.238 -07 000000475 INF: FPGA: Recv ZPIEZORD 24886 17-03-17 23:48:17.248 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:17.248 -07 000000610 INF: Z Motor: Piezo is near 33.2 V (nominally 0 to 100 V), expect near 43.1 V, since DAC is at 4.306 V. Piezo Error = -9.9 V. 17-03-17 23:48:17.248 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -129.2 um, Read 10 ADC samples: Avg = 29397 (-128.4 uncal um), Error = 0.8 uncal um, Median = 29397 (-128.4 uncal um), StdDev = 3 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29391 (-128.4 uncal um), Max = 29404 (-128.4 uncal um), Pos Noise = 7 (0.0 uncal um), Neg Noise = 6 (0.0 uncal um) 17-03-17 23:48:17.248 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29397, posNoise = 7, negNoise = 6 17-03-17 23:48:17.248 -07 000000610 INF: Z Motor: After move to -0.129174, error = -0.000002, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:48:17.248 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms) 17-03-17 23:48:17.248 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:48:17.248 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:48:17.248 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:48:17.248 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:48:17.248 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 23:48:17.248 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:48:17.248 -07 000000486 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:48:17.248 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 23:48:17.248 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 23:48:17.248 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 23:48:17.248 -07 000000438 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-17 23:48:17.248 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 23:48:17.248 -07 000000486 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-17 23:48:17.258 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 23:48:17.258 -07 000000438 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-17 23:48:17.258 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 23:48:17.268 -07 000000486 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 13 ms. 17-03-17 23:48:17.268 -07 000000486 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms. 17-03-17 23:48:17.268 -07 000000438 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 12 ms. 17-03-17 23:48:17.268 -07 000000438 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 18 ms. 17-03-17 23:48:17.268 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 28395 150\n [Camera] 17-03-17 23:48:17.478 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 23:48:18.508 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229 17-03-17 23:48:18.508 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229 17-03-17 23:48:18.508 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:48:18.508 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229 17-03-17 23:48:18.508 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229 17-03-17 23:48:18.518 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:48:18.518 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:48:18.518 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start. 17-03-17 23:48:18.518 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:48:18.518 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start. 17-03-17 23:48:18.698 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28395 1422 17-03-17 23:48:18.848 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572 17-03-17 23:48:18.878 -07 000000475 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 78, FrontChillerTemperature: 3.973092, 17-03-17 23:48:18.898 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 384 ms. 17-03-17 23:48:18.898 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 384 ms. 17-03-17 23:48:18.898 -07 000000382 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:48:18.908 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 389 ms. 17-03-17 23:48:18.908 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 389 ms. 17-03-17 23:48:18.908 -07 000000627 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:48:18.908 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:48:18.908 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:48:18.908 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 400 ms. 17-03-17 23:48:18.918 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 403 ms. 17-03-17 23:48:19.348 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072 17-03-17 23:48:19.348 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072 17-03-17 23:48:19.348 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:48:19.358 -07 000000482 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072 17-03-17 23:48:19.358 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072 17-03-17 23:48:19.358 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:48:19.358 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:48:19.358 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start. 17-03-17 23:48:19.368 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:48:19.368 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start. 17-03-17 23:48:19.538 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP 2265 17-03-17 23:48:19.548 -07 000000438 INF: FPGA: Recv CAMDBLSNAP 17-03-17 23:48:19.548 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 28395 150' command took 2 ms to send, 2260 ms to get response, and 2272 ms overall 17-03-17 23:48:19.548 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-17 23:48:19.548 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 14 at Y-position 69.86328125, Z-Position -0.129175916342482. ------ 17-03-17 23:48:19.548 -07 000000482 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:48:19.548 -07 000000541 INF: Y Motor: MoveYZ optimized starting. Moving Y to 70.7026 mm, moving Z to -0.13552 mm 17-03-17 23:48:19.548 -07 000000541 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 23:48:19.668 -07 000000486 INF: Y Motor: Entering MoveAbsStepped (target = 113124 steps, sync = True, waitForSettling = True) 17-03-17 23:48:19.668 -07 000000486 INF: Y Motor: Moving to 70.7026 mm, started at 69.8633 mm, delta = 0.8393 mm 17-03-17 23:48:19.668 -07 000000438 INF: Z Motor: Entering MoveAbsStepped (DAC = 29604, sync = True, waitForSettling = False) 17-03-17 23:48:19.668 -07 000000438 INF: Z Motor: Moving to -0.135518 mm, started at -0.129176 mm, distance = -6.34 um 17-03-17 23:48:19.668 -07 000000475 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:48:19.668 -07 000000482 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 1 ms to get response, and 121 ms overall 17-03-17 23:48:19.668 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:48:19.678 -07 000000482 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 23:48:19.678 -07 000000409 INF: FPGA: Recv YRDPOS 143081 17-03-17 23:48:19.678 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 1 ms to get response, and 6 ms overall 17-03-17 23:48:19.678 -07 000000486 INF: Y Motor: Encoder = 143081 = motor step 111782.0 = 69.8638 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:48:19.678 -07 000000486 INF: Y Motor: Last commanded position = 69.8726 mm (111796.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 23:48:19.678 -07 000000486 INF: Y Motor: Moving 1342 steps-19 17-03-17 23:48:19.688 -07 000000438 INF: FPGA: Xmit ZDACW 29604\n [Z Motor] 17-03-17 23:48:19.688 -07 000000561 INF: FPGA: Recv ZDACW 17-03-17 23:48:19.698 -07 000000438 INF: FPGA: 'ZDACW 29604' command took 0 ms to send, 0 ms to get response, and 24 ms overall 17-03-17 23:48:19.698 -07 000000486 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 23:48:19.708 -07 000000438 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:48:19.708 -07 000000561 INF: FPGA: Recv ZDACR 29604 17-03-17 23:48:19.718 -07 000000438 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-17 23:48:19.718 -07 000000438 INF: Z Motor: MoveAbsStepped took 44 ms (did NOT wait for settling yet)) 17-03-17 23:48:19.758 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 394 ms. 17-03-17 23:48:19.758 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms. 17-03-17 23:48:19.758 -07 000000627 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:48:19.758 -07 000000382 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 392 ms. 17-03-17 23:48:19.758 -07 000000382 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 392 ms. 17-03-17 23:48:19.758 -07 000000382 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:48:19.758 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:48:19.758 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 405 ms. 17-03-17 23:48:19.758 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:48:19.768 -07 000000382 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms. 17-03-17 23:48:19.878 -07 000000438 INF: FPGA: Recv FOCMRRFOC 17-03-17 23:48:19.878 -07 000000482 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 206 ms overall 17-03-17 23:48:20.078 -07 000000433 INF: FPGA: Recv YMVTILE 17-03-17 23:48:20.078 -07 000000486 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 371 ms to get response, and 396 ms overall 17-03-17 23:48:20.128 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:48:20.128 -07 000000576 INF: FPGA: Recv YRDPOS 144770 17-03-17 23:48:20.138 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:20.138 -07 000000486 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:48:20.138 -07 000000486 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm) 17-03-17 23:48:20.138 -07 000000486 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 396 ms, distance = 0.839 mm, average velocity = 2.120 mm/sec 17-03-17 23:48:21.088 -07 000000486 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:48:21.088 -07 000000382 INF: FPGA: Recv YRDPOS 144770 17-03-17 23:48:21.098 -07 000000486 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:48:21.098 -07 000000486 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:48:21.118 -07 000000486 INF: Y Motor: After move to 70.702606, error = -0.014130, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 23:48:21.118 -07 000000486 INF: Y Motor: Position error after settling (table move) = -29 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm) 17-03-17 23:48:21.118 -07 000000486 INF: Y Motor: Moved to 70.6885 after 1451 ms (table move) 17-03-17 23:48:21.118 -07 000000541 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135518 mm (DAC = 29604) 17-03-17 23:48:21.118 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:21.128 -07 000000382 INF: FPGA: Recv ZSGSRD 30392 17-03-17 23:48:21.128 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall 17-03-17 23:48:21.128 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:21.128 -07 000000623 INF: FPGA: Recv ZSGSRD 30394 17-03-17 23:48:21.138 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:48:21.138 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:21.138 -07 000000382 INF: FPGA: Recv ZSGSRD 30388 17-03-17 23:48:21.148 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:21.148 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:21.148 -07 000000433 INF: FPGA: Recv ZSGSRD 30381 17-03-17 23:48:21.158 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:21.158 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:21.158 -07 000000448 INF: FPGA: Recv ZSGSRD 30388 17-03-17 23:48:21.168 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:21.168 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:21.168 -07 000000382 INF: FPGA: Recv ZSGSRD 30393 17-03-17 23:48:21.178 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:21.178 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:21.178 -07 000000448 INF: FPGA: Recv ZSGSRD 30381 17-03-17 23:48:21.188 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:21.188 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:21.188 -07 000000409 INF: FPGA: Recv ZSGSRD 30388 17-03-17 23:48:21.198 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:21.198 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:21.198 -07 000000561 INF: FPGA: Recv ZSGSRD 30381 17-03-17 23:48:21.208 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:21.208 -07 000000541 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:21.208 -07 000000448 INF: FPGA: Recv ZSGSRD 30390 17-03-17 23:48:21.218 -07 000000541 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:21.218 -07 000000541 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:48:21.218 -07 000000561 INF: FPGA: Recv ZPIEZORD 26153 17-03-17 23:48:21.228 -07 000000541 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:21.228 -07 000000541 INF: Z Motor: Piezo is near 35.9 V (nominally 0 to 100 V), expect near 45.2 V, since DAC is at 4.517 V. Piezo Error = -9.3 V. 17-03-17 23:48:21.228 -07 000000541 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.5 um, Read 10 ADC samples: Avg = 30388 (-134.8 uncal um), Error = 0.8 uncal um, Median = 30388 (-134.8 uncal um), StdDev = 5 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 30381 (-134.7 uncal um), Max = 30394 (-134.8 uncal um), Pos Noise = 6 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um) 17-03-17 23:48:21.228 -07 000000541 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30388, posNoise = 6, negNoise = 7 17-03-17 23:48:21.228 -07 000000541 INF: Z Motor: After move to -0.135518, error = -0.000024, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:48:21.228 -07 000000541 INF: Z Motor: Settle wait time = 1453 ms, measure time = 102 ms (allowed 150 ms), total time = 1555 ms 17-03-17 23:48:21.228 -07 000000541 INF: Z Motor: Waiting extra 48 ms after reading position to reach expected total of 150 ms 17-03-17 23:48:21.278 -07 000000541 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1724 ms 17-03-17 23:48:21.278 -07 000000541 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 23:48:21.278 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:48:21.278 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:48:21.278 -07 000000561 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:48:21.278 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 23:48:21.278 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:48:21.278 -07 000000409 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:48:21.278 -07 000000623 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-17 23:48:21.278 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 23:48:21.288 -07 000000623 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-17 23:48:21.288 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 23:48:21.298 -07 000000623 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 8 ms. 17-03-17 23:48:21.298 -07 000000623 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 12 ms. 17-03-17 23:48:21.318 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:48:21.358 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 23:48:21.658 -07 000000438 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-17 23:48:21.658 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-17 23:48:21.658 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 23:48:21.658 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start. 17-03-17 23:48:21.698 -07 000000475 INF: FPGA: Recv @CAMSNAP 380 17-03-17 23:48:21.698 -07 000000627 INF: FPGA: Recv CAMSNAP 17-03-17 23:48:21.698 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 375 ms to get response, and 400 ms overall 17-03-17 23:48:21.788 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 124 ms. 17-03-17 23:48:21.788 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:48:21.788 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-17 23:48:21.788 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 128 ms. 17-03-17 23:48:21.798 -07 000000576 INF: Autofocus start 17-03-17 23:48:21.798 -07 000000576 INF: MeasureProfile start 17-03-17 23:48:21.798 -07 000000541 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:48:21.798 -07 000000627 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:48:21.808 -07 000000541 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 23:48:21.808 -07 000000541 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 23:48:21.808 -07 000000576 INF: MeasureProfile done 17-03-17 23:48:21.808 -07 000000576 INF: X=-16 Z correction [um]=-0.08128808 17-03-17 23:48:21.808 -07 000000576 INF: Autofocus finished 17-03-17 23:48:22.008 -07 000000409 INF: FPGA: Recv FOCMRRIMG 17-03-17 23:48:22.008 -07 000000541 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 23:48:22.008 -07 000000610 INF: ------------ Scan Snapping tile 14 at Y-position 70.6884765625, Z-position -0.135542310574967. ---------- 17-03-17 23:48:22.008 -07 000000610 INF: Cycle 78 Tile 14 Exposure Settings A 1037 G 500 T 500 C 1037 17-03-17 23:48:22.018 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 28099, sync = True, waitForSettling = True) 17-03-17 23:48:22.018 -07 000000610 INF: Z Motor: Moving to -0.128629 mm, started at -0.135542 mm, distance = 6.91 um 17-03-17 23:48:22.018 -07 000000610 INF: FPGA: Xmit ZDACW 28099\n [Z Motor] 17-03-17 23:48:22.018 -07 000000623 INF: FPGA: Recv ZDACW 17-03-17 23:48:22.028 -07 000000610 INF: FPGA: 'ZDACW 28099' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:48:22.028 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:48:22.028 -07 000000382 INF: FPGA: Recv ZDACR 28099 17-03-17 23:48:22.038 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:22.038 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:48:22.098 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:48:22.098 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 77. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1270, R2=1321, Total=2591. Warn if over 250 bubbles per interval. 17-03-17 23:48:22.188 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:22.188 -07 000000541 INF: FPGA: Recv ZSGSRD 29318 17-03-17 23:48:22.198 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:48:22.198 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:22.198 -07 000000576 INF: FPGA: Recv ZSGSRD 29315 17-03-17 23:48:22.208 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:22.208 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:22.208 -07 000000623 INF: FPGA: Recv ZSGSRD 29311 17-03-17 23:48:22.218 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:22.218 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:22.218 -07 000000627 INF: FPGA: Recv ZSGSRD 29311 17-03-17 23:48:22.228 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:22.228 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:22.228 -07 000000541 INF: FPGA: Recv ZSGSRD 29318 17-03-17 23:48:22.238 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:22.238 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:22.238 -07 000000475 INF: FPGA: Recv ZSGSRD 29310 17-03-17 23:48:22.248 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:22.248 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:22.248 -07 000000409 INF: FPGA: Recv ZSGSRD 29315 17-03-17 23:48:22.258 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:22.258 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:22.258 -07 000000382 INF: FPGA: Recv ZSGSRD 29312 17-03-17 23:48:22.268 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:22.268 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:22.268 -07 000000438 INF: FPGA: Recv ZSGSRD 29319 17-03-17 23:48:22.278 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:22.278 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:22.278 -07 000000576 INF: FPGA: Recv ZSGSRD 29307 17-03-17 23:48:22.288 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:22.288 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:48:22.288 -07 000000409 INF: FPGA: Recv ZPIEZORD 24749 17-03-17 23:48:22.298 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:22.298 -07 000000610 INF: Z Motor: Piezo is near 32.9 V (nominally 0 to 100 V), expect near 42.9 V, since DAC is at 4.288 V. Piezo Error = -10.0 V. 17-03-17 23:48:22.298 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.6 um, Read 10 ADC samples: Avg = 29314 (-127.9 uncal um), Error = 0.8 uncal um, Median = 29314 (-127.9 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29307 (-127.8 uncal um), Max = 29319 (-127.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um) 17-03-17 23:48:22.298 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29314, posNoise = 5, negNoise = 7 17-03-17 23:48:22.298 -07 000000610 INF: Z Motor: After move to -0.128629, error = -0.000014, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:48:22.298 -07 000000610 INF: Z Motor: MoveAbsStepped took 280 ms) 17-03-17 23:48:22.298 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:48:22.298 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:48:22.298 -07 000000502 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:48:22.298 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:48:22.298 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 23:48:22.298 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:48:22.298 -07 000000409 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 23:48:22.298 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 23:48:22.298 -07 000000433 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:48:22.298 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 23:48:22.298 -07 000000409 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-17 23:48:22.298 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 23:48:22.308 -07 000000433 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms. 17-03-17 23:48:22.308 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 23:48:22.308 -07 000000409 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-17 23:48:22.308 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 23:48:22.318 -07 000000433 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms. 17-03-17 23:48:22.318 -07 000000433 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms. 17-03-17 23:48:22.318 -07 000000409 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms. 17-03-17 23:48:22.318 -07 000000409 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 20 ms. 17-03-17 23:48:22.318 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 28275 150\n [Camera] 17-03-17 23:48:22.518 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 23:48:23.558 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229 17-03-17 23:48:23.558 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229 17-03-17 23:48:23.558 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:48:23.568 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229 17-03-17 23:48:23.568 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229 17-03-17 23:48:23.568 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:48:23.568 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:48:23.568 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start. 17-03-17 23:48:23.568 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:48:23.568 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start. 17-03-17 23:48:23.748 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28275 1422 17-03-17 23:48:23.898 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572 17-03-17 23:48:23.948 -07 000000561 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 378 ms. 17-03-17 23:48:23.948 -07 000000561 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 379 ms. 17-03-17 23:48:23.948 -07 000000561 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:48:23.948 -07 000000561 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:48:23.958 -07 000000382 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 387 ms. 17-03-17 23:48:23.958 -07 000000382 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 387 ms. 17-03-17 23:48:23.958 -07 000000382 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:48:23.958 -07 000000382 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:48:23.958 -07 000000382 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 396 ms. 17-03-17 23:48:23.958 -07 000000561 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 394 ms. 17-03-17 23:48:24.238 -07 000000627 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 78, FrontChillerTemperature: 3.98264, 17-03-17 23:48:24.398 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072 17-03-17 23:48:24.408 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072 17-03-17 23:48:24.408 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:48:24.408 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:48:24.408 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) start. 17-03-17 23:48:24.408 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072 17-03-17 23:48:24.408 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072 17-03-17 23:48:24.408 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:48:24.408 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:48:24.408 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) start. 17-03-17 23:48:24.598 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP 2265 17-03-17 23:48:24.598 -07 000000448 INF: FPGA: Recv CAMDBLSNAP 17-03-17 23:48:24.598 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 28275 150' command took 2 ms to send, 2261 ms to get response, and 2272 ms overall 17-03-17 23:48:24.598 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-17 23:48:24.598 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 15 at Y-position 70.6884765625, Z-Position -0.128642706734716. ------ 17-03-17 23:48:24.598 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:48:24.598 -07 000000475 INF: Y Motor: MoveYZ optimized starting. Moving Y to 71.5326 mm, moving Z to -0.13536 mm 17-03-17 23:48:24.598 -07 000000475 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 23:48:24.608 -07 000000448 INF: Y Motor: Entering MoveAbsStepped (target = 114452 steps, sync = True, waitForSettling = True) 17-03-17 23:48:24.608 -07 000000448 INF: Y Motor: Moving to 71.5326 mm, started at 70.6885 mm, delta = 0.8441 mm 17-03-17 23:48:24.608 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:48:24.608 -07 000000561 INF: Z Motor: Entering MoveAbsStepped (DAC = 29570, sync = True, waitForSettling = False) 17-03-17 23:48:24.608 -07 000000561 INF: Z Motor: Moving to -0.135363 mm, started at -0.128643 mm, distance = -6.72 um 17-03-17 23:48:24.618 -07 000000561 INF: FPGA: Xmit ZDACW 29570\n [Z Motor] 17-03-17 23:48:24.808 -07 000000627 INF: Camera: sBCa_ReadImage(785074288, 1130172064, 0x0, 391868352) end. Duration was 404 ms. 17-03-17 23:48:24.808 -07 000000627 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 404 ms. 17-03-17 23:48:24.808 -07 000000627 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:48:24.808 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1165594328, 0x0, 418435064) end. Duration was 403 ms. 17-03-17 23:48:24.808 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 403 ms. 17-03-17 23:48:24.808 -07 000000502 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:48:24.818 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:48:24.818 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms. 17-03-17 23:48:24.818 -07 000000627 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 412 ms. 17-03-17 23:48:24.818 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 414 ms. 17-03-17 23:48:24.828 -07 000000627 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:48:24.828 -07 000000627 INF: FPGA: Recv YRDPOS 144770 17-03-17 23:48:24.828 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 223 ms to get response, and 224 ms overall 17-03-17 23:48:24.828 -07 000000627 INF: FPGA: Recv ZDACW 17-03-17 23:48:24.828 -07 000000561 INF: FPGA: 'ZDACW 29570' command took 0 ms to send, 204 ms to get response, and 220 ms overall 17-03-17 23:48:24.828 -07 000000561 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:48:24.828 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 213 ms to get response, and 221 ms overall 17-03-17 23:48:24.828 -07 000000448 INF: Y Motor: Encoder = 144770 = motor step 113101.6 = 70.6885 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:48:24.828 -07 000000448 INF: Y Motor: Last commanded position = 70.7026 mm (113124.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 23:48:24.828 -07 000000448 INF: Y Motor: Moving 1351 steps-29 17-03-17 23:48:24.828 -07 000000627 INF: FPGA: Recv ZDACR 29570 17-03-17 23:48:24.838 -07 000000561 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 5 ms overall 17-03-17 23:48:24.838 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 23:48:24.838 -07 000000561 INF: Z Motor: MoveAbsStepped took 226 ms (did NOT wait for settling yet)) 17-03-17 23:48:24.848 -07 000000448 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 23:48:25.038 -07 000000627 INF: FPGA: Recv FOCMRRFOC 17-03-17 23:48:25.038 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 2 ms to send, 195 ms to get response, and 210 ms overall 17-03-17 23:48:25.218 -07 000000382 INF: FPGA: Recv YMVTILE 17-03-17 23:48:25.218 -07 000000448 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 392 ms overall 17-03-17 23:48:25.278 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:48:25.278 -07 000000382 INF: FPGA: Recv YRDPOS 146471 17-03-17 23:48:25.288 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:48:25.288 -07 000000448 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:48:25.288 -07 000000448 INF: Y Motor: Position error before settling (table move) = -28 encoder counts (-0.014 mm) 17-03-17 23:48:25.288 -07 000000448 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 393 ms, distance = 0.844 mm, average velocity = 2.148 mm/sec 17-03-17 23:48:26.238 -07 000000448 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:48:26.238 -07 000000502 INF: FPGA: Recv YRDPOS 146471 17-03-17 23:48:26.248 -07 000000448 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:48:26.248 -07 000000448 INF: Y Motor: Encoder = 146471 = motor step 114430.5 = 71.5190 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:48:26.268 -07 000000448 INF: Y Motor: After move to 71.532608, error = -0.013565, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 23:48:26.268 -07 000000448 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 0 counts (0.000 mm) 17-03-17 23:48:26.268 -07 000000448 INF: Y Motor: Moved to 71.5190 after 1663 ms (table move) 17-03-17 23:48:26.278 -07 000000475 INF: Z Motor: EndOfMoveAbsStepped: target = -0.135363 mm (DAC = 29570) 17-03-17 23:48:26.278 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:26.278 -07 000000627 INF: FPGA: Recv ZSGSRD 30351 17-03-17 23:48:26.288 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:48:26.288 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:26.288 -07 000000448 INF: FPGA: Recv ZSGSRD 30359 17-03-17 23:48:26.298 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:26.298 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:26.298 -07 000000627 INF: FPGA: Recv ZSGSRD 30365 17-03-17 23:48:26.308 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:26.308 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:26.308 -07 000000627 INF: FPGA: Recv ZSGSRD 30362 17-03-17 23:48:26.318 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:26.318 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:26.318 -07 000000561 INF: FPGA: Recv ZSGSRD 30369 17-03-17 23:48:26.328 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:26.328 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:26.328 -07 000000627 INF: FPGA: Recv ZSGSRD 30362 17-03-17 23:48:26.338 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:26.348 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:26.348 -07 000000502 INF: FPGA: Recv ZSGSRD 30360 17-03-17 23:48:26.358 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-17 23:48:26.358 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:26.358 -07 000000502 INF: FPGA: Recv ZSGSRD 30356 17-03-17 23:48:26.368 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:26.368 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:26.368 -07 000000382 INF: FPGA: Recv ZSGSRD 30362 17-03-17 23:48:26.378 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:26.378 -07 000000475 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:26.378 -07 000000448 INF: FPGA: Recv ZSGSRD 30365 17-03-17 23:48:26.388 -07 000000475 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:26.388 -07 000000475 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:48:26.388 -07 000000561 INF: FPGA: Recv ZPIEZORD 26158 17-03-17 23:48:26.398 -07 000000475 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:26.398 -07 000000475 INF: Z Motor: Piezo is near 35.9 V (nominally 0 to 100 V), expect near 45.1 V, since DAC is at 4.512 V. Piezo Error = -9.2 V. 17-03-17 23:48:26.398 -07 000000475 INF: Z Motor: ReadAdcAverage: Commanded Z = -135.4 um, Read 10 ADC samples: Avg = 30361 (-134.6 uncal um), Error = 0.8 uncal um, Median = 30362 (-134.6 uncal um), StdDev = 5 (0.0 uncal um), Range = 18 (0.1 uncal um), Min = 30351 (-134.5 uncal um), Max = 30369 (-134.6 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 10 (0.1 uncal um) 17-03-17 23:48:26.398 -07 000000475 INF: Z Motor: ADC noise = 10, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30361, posNoise = 8, negNoise = 10 17-03-17 23:48:26.398 -07 000000475 INF: Z Motor: After move to -0.135363, error = -0.000006, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:48:26.398 -07 000000475 INF: Z Motor: Settle wait time = 1666 ms, measure time = 122 ms (allowed 150 ms), total time = 1788 ms 17-03-17 23:48:26.398 -07 000000475 INF: Z Motor: Waiting extra 28 ms after reading position to reach expected total of 150 ms 17-03-17 23:48:26.428 -07 000000475 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1820 ms 17-03-17 23:48:26.428 -07 000000475 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 23:48:26.428 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:48:26.428 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:48:26.428 -07 000000448 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:48:26.428 -07 000000627 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:48:26.428 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 23:48:26.428 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:48:26.428 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:48:26.428 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 23:48:26.438 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-17 23:48:26.438 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 23:48:26.448 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 13 ms. 17-03-17 23:48:26.448 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 17 ms. 17-03-17 23:48:26.448 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:48:26.498 -07 000000627 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 23:48:26.798 -07 000000448 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-17 23:48:26.798 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-17 23:48:26.798 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 23:48:26.798 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 615841328, 0x0, 559484976) start. 17-03-17 23:48:26.838 -07 000000475 INF: FPGA: Recv @CAMSNAP 380 17-03-17 23:48:26.838 -07 000000415 INF: FPGA: Recv CAMSNAP 17-03-17 23:48:26.838 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 385 ms overall 17-03-17 23:48:26.928 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 615841328, 0x0, 559484976) end. Duration was 127 ms. 17-03-17 23:48:26.928 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:48:26.928 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-17 23:48:26.928 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms. 17-03-17 23:48:26.938 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:48:26.938 -07 000000382 INF: Autofocus start 17-03-17 23:48:26.938 -07 000000382 INF: MeasureProfile start 17-03-17 23:48:26.938 -07 000000561 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:48:26.948 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 23:48:26.948 -07 000000448 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 23:48:26.948 -07 000000382 INF: MeasureProfile done 17-03-17 23:48:26.948 -07 000000382 INF: X=-96 Z correction [um]=-0.4707136 17-03-17 23:48:26.948 -07 000000382 INF: Autofocus finished 17-03-17 23:48:27.098 -07 000000475 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:48:27.098 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 77. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1270, R2=1321, Total=2591. Warn if over 250 bubbles per interval. 17-03-17 23:48:27.148 -07 000000475 INF: FPGA: Recv FOCMRRIMG 17-03-17 23:48:27.148 -07 000000448 INF: FPGA: 'FOCMRRIMG' command took 1 ms to send, 194 ms to get response, and 204 ms overall 17-03-17 23:48:27.148 -07 000000610 INF: ------------ Scan Snapping tile 15 at Y-position 71.51904296875, Z-position -0.135368856847139. ---------- 17-03-17 23:48:27.148 -07 000000610 INF: Cycle 78 Tile 15 Exposure Settings A 1037 G 500 T 500 C 1037 17-03-17 23:48:27.158 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27980, sync = True, waitForSettling = True) 17-03-17 23:48:27.158 -07 000000610 INF: Z Motor: Moving to -0.128084 mm, started at -0.135369 mm, distance = 7.28 um 17-03-17 23:48:27.158 -07 000000610 INF: FPGA: Xmit ZDACW 27980\n [Z Motor] 17-03-17 23:48:27.158 -07 000000502 INF: FPGA: Recv ZDACW 17-03-17 23:48:27.168 -07 000000610 INF: FPGA: 'ZDACW 27980' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:48:27.168 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:48:27.168 -07 000000561 INF: FPGA: Recv ZDACR 27980 17-03-17 23:48:27.178 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:27.178 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:48:27.328 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:27.328 -07 000000448 INF: FPGA: Recv ZSGSRD 29230 17-03-17 23:48:27.338 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:27.338 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:27.338 -07 000000502 INF: FPGA: Recv ZSGSRD 29226 17-03-17 23:48:27.348 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:27.348 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:27.348 -07 000000415 INF: FPGA: Recv ZSGSRD 29229 17-03-17 23:48:27.358 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:27.358 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:27.358 -07 000000618 INF: FPGA: Recv ZSGSRD 29230 17-03-17 23:48:27.368 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:27.368 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:27.368 -07 000000415 INF: FPGA: Recv ZSGSRD 29228 17-03-17 23:48:27.378 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:27.378 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:27.378 -07 000000382 INF: FPGA: Recv ZSGSRD 29232 17-03-17 23:48:27.388 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:27.388 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:27.388 -07 000000561 INF: FPGA: Recv ZSGSRD 29230 17-03-17 23:48:27.398 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:27.398 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:27.398 -07 000000618 INF: FPGA: Recv ZSGSRD 29230 17-03-17 23:48:27.408 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:27.408 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:27.408 -07 000000475 INF: FPGA: Recv ZSGSRD 29227 17-03-17 23:48:27.418 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:27.418 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:27.418 -07 000000627 INF: FPGA: Recv ZSGSRD 29227 17-03-17 23:48:27.428 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:27.428 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:48:27.428 -07 000000561 INF: FPGA: Recv ZPIEZORD 24666 17-03-17 23:48:27.438 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:27.438 -07 000000610 INF: Z Motor: Piezo is near 32.7 V (nominally 0 to 100 V), expect near 42.7 V, since DAC is at 4.269 V. Piezo Error = -10.0 V. 17-03-17 23:48:27.438 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -128.1 um, Read 10 ADC samples: Avg = 29229 (-127.3 uncal um), Error = 0.8 uncal um, Median = 29230 (-127.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 29226 (-127.3 uncal um), Max = 29232 (-127.3 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um) 17-03-17 23:48:27.438 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29229, posNoise = 3, negNoise = 3 17-03-17 23:48:27.438 -07 000000610 INF: Z Motor: After move to -0.128084, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:48:27.438 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms) 17-03-17 23:48:27.438 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:48:27.438 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:48:27.438 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:48:27.438 -07 000000502 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:48:27.438 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 23:48:27.438 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 23:48:27.438 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 23:48:27.438 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:48:27.438 -07 000000561 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-17 23:48:27.438 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 23:48:27.438 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:48:27.438 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 23:48:27.438 -07 000000448 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-17 23:48:27.448 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 23:48:27.448 -07 000000561 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-17 23:48:27.448 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 23:48:27.458 -07 000000448 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms. 17-03-17 23:48:27.458 -07 000000448 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms. 17-03-17 23:48:27.458 -07 000000561 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 16 ms. 17-03-17 23:48:27.458 -07 000000561 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms. 17-03-17 23:48:27.468 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 28157 150\n [Camera] 17-03-17 23:48:27.668 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 23:48:28.698 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229 17-03-17 23:48:28.698 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229 17-03-17 23:48:28.698 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:48:28.698 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:48:28.698 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) start. 17-03-17 23:48:28.708 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229 17-03-17 23:48:28.708 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229 17-03-17 23:48:28.708 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:48:28.708 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:48:28.708 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) start. 17-03-17 23:48:28.898 -07 000000502 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28157 1422 17-03-17 23:48:29.038 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572 17-03-17 23:48:29.098 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2147487792, 0x0, 391868352) end. Duration was 399 ms. 17-03-17 23:48:29.098 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms. 17-03-17 23:48:29.098 -07 000000618 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:48:29.108 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2182910056, 0x0, 418435064) end. Duration was 399 ms. 17-03-17 23:48:29.108 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 400 ms. 17-03-17 23:48:29.108 -07 000000627 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:48:29.108 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:48:29.108 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 403 ms. 17-03-17 23:48:29.108 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:48:29.118 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 410 ms. 17-03-17 23:48:29.548 -07 000000627 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072 17-03-17 23:48:29.548 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072 17-03-17 23:48:29.548 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:48:29.548 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:48:29.548 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) start. 17-03-17 23:48:29.548 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072 17-03-17 23:48:29.548 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072 17-03-17 23:48:29.548 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:48:29.548 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:48:29.668 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start. 17-03-17 23:48:29.678 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 78, FrontChillerTemperature: 3.98264, 17-03-17 23:48:29.738 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 2264 17-03-17 23:48:29.738 -07 000000382 INF: FPGA: Recv CAMDBLSNAP 17-03-17 23:48:29.738 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 28157 150' command took 2 ms to send, 2262 ms to get response, and 2272 ms overall 17-03-17 23:48:29.738 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-17 23:48:29.738 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 16 at Y-position 71.51904296875, Z-Position -0.128096648702666. ------ 17-03-17 23:48:29.738 -07 000000561 INF: Y Motor: MoveYZ optimized starting. Moving Y to 72.3626 mm, moving Z to -0.13449 mm 17-03-17 23:48:29.738 -07 000000561 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 23:48:29.738 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:48:29.948 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 2218332320, 0x0, 391868352) end. Duration was 399 ms. 17-03-17 23:48:29.948 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms. 17-03-17 23:48:29.948 -07 000000618 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:48:29.948 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 6 ms. 17-03-17 23:48:29.948 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 406 ms. 17-03-17 23:48:29.968 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 115780 steps, sync = True, waitForSettling = True) 17-03-17 23:48:29.968 -07 000000618 INF: Y Motor: Moving to 72.3626 mm, started at 71.5190 mm, delta = 0.8436 mm 17-03-17 23:48:29.968 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:48:30.058 -07 000000627 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 392 ms. 17-03-17 23:48:30.058 -07 000000627 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 509 ms. 17-03-17 23:48:30.058 -07 000000627 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:48:30.058 -07 000000627 INF: Camera: CopyActivePixFullImage end. Duration was 2 ms. 17-03-17 23:48:30.068 -07 000000627 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 518 ms. 17-03-17 23:48:30.078 -07 000000627 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:48:30.078 -07 000000627 INF: FPGA: Recv YRDPOS 146472 17-03-17 23:48:30.078 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 331 ms to get response, and 333 ms overall 17-03-17 23:48:30.078 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 101 ms to get response, and 111 ms overall 17-03-17 23:48:30.078 -07 000000618 INF: Y Motor: Encoder = 146472 = motor step 114431.3 = 71.5195 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:48:30.078 -07 000000382 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 23:48:30.078 -07 000000627 INF: Z Motor: Entering MoveAbsStepped (DAC = 29380, sync = True, waitForSettling = False) 17-03-17 23:48:30.078 -07 000000627 INF: Z Motor: Moving to -0.134493 mm, started at -0.128097 mm, distance = -6.40 um 17-03-17 23:48:30.078 -07 000000618 INF: Y Motor: Last commanded position = 71.5326 mm (114452.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 23:48:30.078 -07 000000618 INF: Y Motor: Moving 1349 steps-28 17-03-17 23:48:30.088 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 23:48:30.098 -07 000000627 INF: FPGA: Xmit ZDACW 29380\n [Z Motor] 17-03-17 23:48:30.628 -07 000000459 INF: FPGA: Recv ZDACW 17-03-17 23:48:30.628 -07 000000459 INF: FPGA: Recv FOCMRRFOC 17-03-17 23:48:30.628 -07 000000459 INF: FPGA: Recv YMVTILE 17-03-17 23:48:30.628 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 530 ms to get response, and 541 ms overall 17-03-17 23:48:30.628 -07 000000627 INF: FPGA: 'ZDACW 29380' command took 0 ms to send, 520 ms to get response, and 546 ms overall 17-03-17 23:48:30.628 -07 000000627 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:48:30.628 -07 000000382 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 540 ms to get response, and 548 ms overall 17-03-17 23:48:30.628 -07 000000459 INF: FPGA: Recv ZDACR 29380 17-03-17 23:48:30.638 -07 000000627 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:48:30.638 -07 000000627 INF: Z Motor: MoveAbsStepped took 556 ms (did NOT wait for settling yet)) 17-03-17 23:48:30.668 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:48:30.668 -07 000000382 INF: FPGA: Recv YRDPOS 148172 17-03-17 23:48:30.678 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-17 23:48:30.678 -07 000000618 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:48:30.678 -07 000000618 INF: Y Motor: Position error before settling (table move) = -27 encoder counts (-0.013 mm) 17-03-17 23:48:30.678 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 541 ms, distance = 0.844 mm, average velocity = 1.559 mm/sec 17-03-17 23:48:31.628 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:48:31.628 -07 000000382 INF: FPGA: Recv YRDPOS 148172 17-03-17 23:48:31.638 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:48:31.638 -07 000000618 INF: Y Motor: Encoder = 148172 = motor step 115759.4 = 72.3496 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:48:31.658 -07 000000618 INF: Y Motor: After move to 72.362610, error = -0.013000, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 23:48:31.658 -07 000000618 INF: Y Motor: Position error after settling (table move) = -27 encoder counts (-0.013 mm), Delta during settling = 0 counts (0.000 mm) 17-03-17 23:48:31.658 -07 000000618 INF: Y Motor: Moved to 72.3496 after 1696 ms (table move) 17-03-17 23:48:31.658 -07 000000561 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134493 mm (DAC = 29380) 17-03-17 23:48:31.658 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:31.668 -07 000000382 INF: FPGA: Recv ZSGSRD 30229 17-03-17 23:48:31.678 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:48:31.678 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:31.678 -07 000000627 INF: FPGA: Recv ZSGSRD 30222 17-03-17 23:48:31.688 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:31.688 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:31.688 -07 000000382 INF: FPGA: Recv ZSGSRD 30227 17-03-17 23:48:31.698 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:31.708 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:31.708 -07 000000618 INF: FPGA: Recv ZSGSRD 30227 17-03-17 23:48:31.718 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-17 23:48:31.718 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:31.718 -07 000000627 INF: FPGA: Recv ZSGSRD 30225 17-03-17 23:48:31.728 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:31.728 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:31.728 -07 000000382 INF: FPGA: Recv ZSGSRD 30225 17-03-17 23:48:31.738 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:31.738 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:31.738 -07 000000382 INF: FPGA: Recv ZSGSRD 30225 17-03-17 23:48:31.748 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:31.748 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:31.748 -07 000000382 INF: FPGA: Recv ZSGSRD 30228 17-03-17 23:48:31.758 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:48:31.758 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:31.758 -07 000000459 INF: FPGA: Recv ZSGSRD 30229 17-03-17 23:48:31.768 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:31.768 -07 000000561 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:31.768 -07 000000618 INF: FPGA: Recv ZSGSRD 30227 17-03-17 23:48:31.778 -07 000000561 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:31.778 -07 000000561 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:48:31.778 -07 000000627 INF: FPGA: Recv ZPIEZORD 25946 17-03-17 23:48:31.788 -07 000000561 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:31.788 -07 000000561 INF: Z Motor: Piezo is near 35.4 V (nominally 0 to 100 V), expect near 44.8 V, since DAC is at 4.483 V. Piezo Error = -9.4 V. 17-03-17 23:48:31.788 -07 000000561 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.5 um, Read 10 ADC samples: Avg = 30226 (-133.7 uncal um), Error = 0.8 uncal um, Median = 30227 (-133.7 uncal um), StdDev = 2 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 30222 (-133.7 uncal um), Max = 30229 (-133.7 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um) 17-03-17 23:48:31.788 -07 000000561 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30226, posNoise = 3, negNoise = 4 17-03-17 23:48:31.788 -07 000000561 INF: Z Motor: After move to -0.134493, error = -0.000009, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:48:31.788 -07 000000561 INF: Z Motor: Settle wait time = 1585 ms, measure time = 121 ms (allowed 150 ms), total time = 1706 ms 17-03-17 23:48:31.788 -07 000000561 INF: Z Motor: Waiting extra 29 ms after reading position to reach expected total of 150 ms 17-03-17 23:48:31.818 -07 000000561 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2071 ms 17-03-17 23:48:31.818 -07 000000561 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 23:48:31.818 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:48:31.818 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:48:31.818 -07 000000627 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:48:31.818 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:48:31.818 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 23:48:31.818 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:48:31.818 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:48:31.818 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 23:48:31.828 -07 000000382 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-17 23:48:31.828 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 23:48:31.838 -07 000000382 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms. 17-03-17 23:48:31.838 -07 000000382 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms. 17-03-17 23:48:31.838 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:48:31.888 -07 000000618 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 23:48:32.098 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:48:32.098 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 77. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1270, R2=1321, Total=2591. Warn if over 250 bubbles per interval. 17-03-17 23:48:32.178 -07 000000627 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-17 23:48:32.178 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-17 23:48:32.188 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 23:48:32.188 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start. 17-03-17 23:48:32.218 -07 000000486 INF: FPGA: Recv @CAMSNAP 380 17-03-17 23:48:32.218 -07 000000618 INF: FPGA: Recv CAMSNAP 17-03-17 23:48:32.228 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 379 ms to get response, and 384 ms overall 17-03-17 23:48:32.308 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms. 17-03-17 23:48:32.308 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:48:32.318 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-17 23:48:32.318 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms. 17-03-17 23:48:32.328 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:48:32.328 -07 000000627 INF: Autofocus start 17-03-17 23:48:32.328 -07 000000627 INF: MeasureProfile start 17-03-17 23:48:32.328 -07 000000561 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:48:32.338 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 23:48:32.338 -07 000000480 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 23:48:32.338 -07 000000627 INF: MeasureProfile done 17-03-17 23:48:32.338 -07 000000627 INF: X=0 Z correction [um]=-0.02394831 17-03-17 23:48:32.338 -07 000000627 INF: Autofocus finished 17-03-17 23:48:32.538 -07 000000382 INF: FPGA: Recv FOCMRRIMG 17-03-17 23:48:32.538 -07 000000480 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 23:48:32.538 -07 000000610 INF: ------------ Scan Snapping tile 16 at Y-position 72.349609375, Z-position -0.134501588208002. ---------- 17-03-17 23:48:32.538 -07 000000610 INF: Cycle 78 Tile 16 Exposure Settings A 1037 G 500 T 500 C 1037 17-03-17 23:48:32.548 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27887, sync = True, waitForSettling = True) 17-03-17 23:48:32.548 -07 000000610 INF: Z Motor: Moving to -0.127659 mm, started at -0.134502 mm, distance = 6.84 um 17-03-17 23:48:32.548 -07 000000610 INF: FPGA: Xmit ZDACW 27887\n [Z Motor] 17-03-17 23:48:32.548 -07 000000382 INF: FPGA: Recv ZDACW 17-03-17 23:48:32.558 -07 000000610 INF: FPGA: 'ZDACW 27887' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:32.558 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:48:32.558 -07 000000382 INF: FPGA: Recv ZDACR 27887 17-03-17 23:48:32.568 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:32.568 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:48:32.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:32.718 -07 000000480 INF: FPGA: Recv ZSGSRD 29163 17-03-17 23:48:32.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:48:32.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:32.728 -07 000000382 INF: FPGA: Recv ZSGSRD 29167 17-03-17 23:48:32.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:32.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:32.738 -07 000000480 INF: FPGA: Recv ZSGSRD 29159 17-03-17 23:48:32.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:32.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:32.748 -07 000000618 INF: FPGA: Recv ZSGSRD 29160 17-03-17 23:48:32.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:32.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:32.758 -07 000000459 INF: FPGA: Recv ZSGSRD 29162 17-03-17 23:48:32.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:32.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:32.768 -07 000000627 INF: FPGA: Recv ZSGSRD 29165 17-03-17 23:48:32.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:32.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:32.778 -07 000000382 INF: FPGA: Recv ZSGSRD 29155 17-03-17 23:48:32.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:32.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:32.788 -07 000000459 INF: FPGA: Recv ZSGSRD 29162 17-03-17 23:48:32.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:32.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:32.798 -07 000000561 INF: FPGA: Recv ZSGSRD 29165 17-03-17 23:48:32.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:32.808 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:32.808 -07 000000512 INF: FPGA: Recv ZSGSRD 29162 17-03-17 23:48:32.818 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:32.818 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:48:32.818 -07 000000547 INF: FPGA: Recv ZPIEZORD 24570 17-03-17 23:48:32.828 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:32.828 -07 000000610 INF: Z Motor: Piezo is near 32.5 V (nominally 0 to 100 V), expect near 42.6 V, since DAC is at 4.255 V. Piezo Error = -10.1 V. 17-03-17 23:48:32.828 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.7 um, Read 10 ADC samples: Avg = 29162 (-126.9 uncal um), Error = 0.8 uncal um, Median = 29162 (-126.9 uncal um), StdDev = 3 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29155 (-126.8 uncal um), Max = 29167 (-126.9 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um) 17-03-17 23:48:32.828 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29162, posNoise = 5, negNoise = 7 17-03-17 23:48:32.828 -07 000000610 INF: Z Motor: After move to -0.127659, error = -0.000008, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:48:32.828 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms) 17-03-17 23:48:32.828 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:48:32.828 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:48:32.828 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:48:32.828 -07 000000512 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:48:32.828 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 23:48:32.828 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:48:32.828 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 23:48:32.828 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 23:48:32.828 -07 000000627 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:48:32.828 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 23:48:32.828 -07 000000382 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-17 23:48:32.828 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 23:48:32.828 -07 000000627 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms. 17-03-17 23:48:32.828 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 23:48:32.838 -07 000000382 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-17 23:48:32.838 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 23:48:32.848 -07 000000627 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 14 ms. 17-03-17 23:48:32.848 -07 000000627 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 18 ms. 17-03-17 23:48:32.848 -07 000000382 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 14 ms. 17-03-17 23:48:32.848 -07 000000382 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms. 17-03-17 23:48:32.848 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 28064 150\n [Camera] 17-03-17 23:48:33.048 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 23:48:34.088 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229 17-03-17 23:48:34.088 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229 17-03-17 23:48:34.088 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:48:34.098 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229 17-03-17 23:48:34.098 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229 17-03-17 23:48:34.098 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:48:34.098 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:48:34.098 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start. 17-03-17 23:48:34.098 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:48:34.098 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start. 17-03-17 23:48:34.278 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28064 1422 17-03-17 23:48:34.428 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572 17-03-17 23:48:34.468 -07 000000512 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 372 ms. 17-03-17 23:48:34.468 -07 000000512 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 373 ms. 17-03-17 23:48:34.468 -07 000000512 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:48:34.478 -07 000000512 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:48:34.478 -07 000000459 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 380 ms. 17-03-17 23:48:34.478 -07 000000459 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 381 ms. 17-03-17 23:48:34.478 -07 000000459 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:48:34.478 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:48:34.478 -07 000000459 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 389 ms. 17-03-17 23:48:34.478 -07 000000512 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 388 ms. 17-03-17 23:48:34.928 -07 000000486 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072 17-03-17 23:48:34.938 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072 17-03-17 23:48:34.938 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:48:34.938 -07 000000512 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072 17-03-17 23:48:34.938 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072 17-03-17 23:48:34.938 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:48:34.938 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:48:34.938 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start. 17-03-17 23:48:34.948 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:48:34.948 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) start. 17-03-17 23:48:35.038 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 78, FrontChillerTemperature: 4.033041, 17-03-17 23:48:35.148 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 2265 17-03-17 23:48:35.148 -07 000000480 INF: FPGA: Recv CAMDBLSNAP 17-03-17 23:48:35.148 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 28064 150' command took 2 ms to send, 2287 ms to get response, and 2298 ms overall 17-03-17 23:48:35.158 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-17 23:48:35.158 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 17 at Y-position 72.349609375, Z-Position -0.127666226489168. ------ 17-03-17 23:48:35.158 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 73.1926 mm, moving Z to -0.13426 mm 17-03-17 23:48:35.158 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 23:48:35.168 -07 000000480 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:48:35.338 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 397 ms. 17-03-17 23:48:35.338 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 398 ms. 17-03-17 23:48:35.338 -07 000000618 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:48:35.338 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2147487792, 0x0, 418435064) end. Duration was 394 ms. 17-03-17 23:48:35.338 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 394 ms. 17-03-17 23:48:35.338 -07 000000459 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:48:35.348 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:48:35.348 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 410 ms. 17-03-17 23:48:35.348 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:48:35.348 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 415 ms. 17-03-17 23:48:35.358 -07 000000618 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:48:35.358 -07 000000480 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 183 ms to get response, and 199 ms overall 17-03-17 23:48:35.358 -07 000000618 INF: Y Motor: Entering MoveAbsStepped (target = 117108 steps, sync = True, waitForSettling = True) 17-03-17 23:48:35.358 -07 000000618 INF: Y Motor: Moving to 73.1926 mm, started at 72.3496 mm, delta = 0.8430 mm 17-03-17 23:48:35.368 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:48:35.368 -07 000000459 INF: Z Motor: Entering MoveAbsStepped (DAC = 29330, sync = True, waitForSettling = False) 17-03-17 23:48:35.368 -07 000000459 INF: Z Motor: Moving to -0.134264 mm, started at -0.127666 mm, distance = -6.60 um 17-03-17 23:48:35.378 -07 000000480 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 23:48:35.388 -07 000000459 INF: FPGA: Xmit ZDACW 29330\n [Z Motor] 17-03-17 23:48:36.228 -07 000000409 INF: FPGA: Recv YRDPOS 148173 17-03-17 23:48:36.228 -07 000000409 INF: FPGA: Recv ZDACW 17-03-17 23:48:36.228 -07 000000409 INF: FPGA: Recv FOCMRRFOC 17-03-17 23:48:36.228 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 850 ms to get response, and 865 ms overall 17-03-17 23:48:36.228 -07 000000618 INF: Y Motor: Encoder = 148173 = motor step 115760.2 = 72.3501 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:48:36.228 -07 000000459 INF: FPGA: 'ZDACW 29330' command took 0 ms to send, 830 ms to get response, and 858 ms overall 17-03-17 23:48:36.228 -07 000000459 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:48:36.228 -07 000000480 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 840 ms to get response, and 867 ms overall 17-03-17 23:48:36.228 -07 000000409 INF: FPGA: Recv ZDACR 29330 17-03-17 23:48:36.228 -07 000000618 INF: Y Motor: Last commanded position = 72.3626 mm (115780.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 23:48:36.228 -07 000000618 INF: Y Motor: Moving 1348 steps-27 17-03-17 23:48:36.238 -07 000000459 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:48:36.238 -07 000000459 INF: Z Motor: MoveAbsStepped took 868 ms (did NOT wait for settling yet)) 17-03-17 23:48:36.238 -07 000000618 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 23:48:36.608 -07 000000459 INF: FPGA: Recv YMVTILE 17-03-17 23:48:36.608 -07 000000618 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 381 ms overall 17-03-17 23:48:36.658 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:48:36.658 -07 000000480 INF: FPGA: Recv YRDPOS 149865 17-03-17 23:48:36.668 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:48:36.668 -07 000000618 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:48:36.668 -07 000000618 INF: Y Motor: Position error before settling (table move) = -33 encoder counts (-0.016 mm) 17-03-17 23:48:36.668 -07 000000618 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 381 ms, distance = 0.843 mm, average velocity = 2.213 mm/sec 17-03-17 23:48:37.098 -07 000000480 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:48:37.108 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 77. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1270, R2=1321, Total=2591. Warn if over 250 bubbles per interval. 17-03-17 23:48:37.618 -07 000000618 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:48:37.618 -07 000000459 INF: FPGA: Recv YRDPOS 149865 17-03-17 23:48:37.628 -07 000000618 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:37.628 -07 000000618 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:48:37.648 -07 000000618 INF: Y Motor: After move to 73.192604, error = -0.016335, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 23:48:37.648 -07 000000618 INF: Y Motor: Position error after settling (table move) = -33 encoder counts (-0.016 mm), Delta during settling = 0 counts (0.000 mm) 17-03-17 23:48:37.648 -07 000000618 INF: Y Motor: Moved to 73.1763 after 2290 ms (table move) 17-03-17 23:48:37.648 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.134264 mm (DAC = 29330) 17-03-17 23:48:37.648 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:37.658 -07 000000438 INF: FPGA: Recv ZSGSRD 30197 17-03-17 23:48:37.658 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 2 ms to get response, and 2 ms overall 17-03-17 23:48:37.658 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:37.658 -07 000000480 INF: FPGA: Recv ZSGSRD 30193 17-03-17 23:48:37.668 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:48:37.668 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:37.668 -07 000000482 INF: FPGA: Recv ZSGSRD 30183 17-03-17 23:48:37.678 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:37.678 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:37.678 -07 000000480 INF: FPGA: Recv ZSGSRD 30188 17-03-17 23:48:37.688 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:37.688 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:37.688 -07 000000618 INF: FPGA: Recv ZSGSRD 30186 17-03-17 23:48:37.698 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:37.698 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:37.698 -07 000000409 INF: FPGA: Recv ZSGSRD 30197 17-03-17 23:48:37.708 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:37.708 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:37.708 -07 000000482 INF: FPGA: Recv ZSGSRD 30194 17-03-17 23:48:37.718 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:37.718 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:37.718 -07 000000459 INF: FPGA: Recv ZSGSRD 30183 17-03-17 23:48:37.728 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:37.728 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:37.728 -07 000000482 INF: FPGA: Recv ZSGSRD 30188 17-03-17 23:48:37.738 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:37.738 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:37.738 -07 000000541 INF: FPGA: Recv ZSGSRD 30181 17-03-17 23:48:37.748 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:37.748 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:48:37.748 -07 000000480 INF: FPGA: Recv ZPIEZORD 25986 17-03-17 23:48:37.758 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:48:37.758 -07 000000382 INF: Z Motor: Piezo is near 35.5 V (nominally 0 to 100 V), expect near 44.8 V, since DAC is at 4.475 V. Piezo Error = -9.2 V. 17-03-17 23:48:37.758 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -134.3 um, Read 10 ADC samples: Avg = 30189 (-133.5 uncal um), Error = 0.8 uncal um, Median = 30188 (-133.5 uncal um), StdDev = 6 (0.0 uncal um), Range = 16 (0.1 uncal um), Min = 30181 (-133.4 uncal um), Max = 30197 (-133.5 uncal um), Pos Noise = 8 (0.1 uncal um), Neg Noise = 8 (0.1 uncal um) 17-03-17 23:48:37.758 -07 000000382 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30189, posNoise = 8, negNoise = 8 17-03-17 23:48:37.758 -07 000000382 INF: Z Motor: After move to -0.134264, error = 0.000000, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:48:37.758 -07 000000382 INF: Z Motor: Settle wait time = 2287 ms, measure time = 101 ms (allowed 150 ms), total time = 2388 ms 17-03-17 23:48:37.758 -07 000000382 INF: Z Motor: Waiting extra 49 ms after reading position to reach expected total of 150 ms 17-03-17 23:48:37.808 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2645 ms 17-03-17 23:48:37.808 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 23:48:37.808 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:48:37.808 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:48:37.808 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:48:37.808 -07 000000438 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:48:37.808 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 23:48:37.808 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:48:37.808 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 0 ms. 17-03-17 23:48:37.808 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 23:48:37.818 -07 000000618 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 3 ms. 17-03-17 23:48:37.818 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 23:48:37.828 -07 000000618 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 11 ms. 17-03-17 23:48:37.828 -07 000000618 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms. 17-03-17 23:48:37.828 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:48:37.878 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 23:48:38.178 -07 000000618 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-17 23:48:38.178 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-17 23:48:38.178 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 23:48:38.178 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start. 17-03-17 23:48:38.218 -07 000000541 INF: FPGA: Recv @CAMSNAP 380 17-03-17 23:48:38.218 -07 000000409 INF: FPGA: Recv CAMSNAP 17-03-17 23:48:38.218 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 380 ms to get response, and 384 ms overall 17-03-17 23:48:38.308 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 126 ms. 17-03-17 23:48:38.308 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:48:38.308 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-17 23:48:38.308 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 131 ms. 17-03-17 23:48:38.318 -07 000000382 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:48:38.318 -07 000000459 INF: Autofocus start 17-03-17 23:48:38.318 -07 000000459 INF: MeasureProfile start 17-03-17 23:48:38.318 -07 000000480 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:48:38.328 -07 000000382 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 23:48:38.328 -07 000000382 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 23:48:38.328 -07 000000459 INF: MeasureProfile done 17-03-17 23:48:38.328 -07 000000459 INF: X=-3 Z correction [um]=-0.01800644 17-03-17 23:48:38.328 -07 000000459 INF: Autofocus finished 17-03-17 23:48:38.528 -07 000000618 INF: FPGA: Recv FOCMRRIMG 17-03-17 23:48:38.528 -07 000000382 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 23:48:38.528 -07 000000610 INF: ------------ Scan Snapping tile 17 at Y-position 73.17626953125, Z-position -0.134263892358757. ---------- 17-03-17 23:48:38.528 -07 000000610 INF: Cycle 78 Tile 17 Exposure Settings A 1037 G 500 T 500 C 1037 17-03-17 23:48:38.538 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27839, sync = True, waitForSettling = True) 17-03-17 23:48:38.538 -07 000000610 INF: Z Motor: Moving to -0.127439 mm, started at -0.134264 mm, distance = 6.83 um 17-03-17 23:48:38.538 -07 000000610 INF: FPGA: Xmit ZDACW 27839\n [Z Motor] 17-03-17 23:48:38.538 -07 000000618 INF: FPGA: Recv ZDACW 17-03-17 23:48:38.548 -07 000000610 INF: FPGA: 'ZDACW 27839' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:48:38.548 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:48:38.548 -07 000000482 INF: FPGA: Recv ZDACR 27839 17-03-17 23:48:38.558 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:38.558 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:48:38.708 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:38.708 -07 000000438 INF: FPGA: Recv ZSGSRD 29130 17-03-17 23:48:38.718 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:48:38.718 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:38.718 -07 000000480 INF: FPGA: Recv ZSGSRD 29133 17-03-17 23:48:38.728 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:38.728 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:38.728 -07 000000409 INF: FPGA: Recv ZSGSRD 29122 17-03-17 23:48:38.738 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:38.738 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:38.738 -07 000000482 INF: FPGA: Recv ZSGSRD 29131 17-03-17 23:48:38.748 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:38.748 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:38.748 -07 000000438 INF: FPGA: Recv ZSGSRD 29128 17-03-17 23:48:38.758 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:38.758 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:38.758 -07 000000459 INF: FPGA: Recv ZSGSRD 29124 17-03-17 23:48:38.768 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:38.768 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:38.768 -07 000000438 INF: FPGA: Recv ZSGSRD 29126 17-03-17 23:48:38.778 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:38.778 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:38.778 -07 000000541 INF: FPGA: Recv ZSGSRD 29130 17-03-17 23:48:38.788 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:38.788 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:38.788 -07 000000382 INF: FPGA: Recv ZSGSRD 29134 17-03-17 23:48:38.798 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:38.798 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:38.798 -07 000000459 INF: FPGA: Recv ZSGSRD 29129 17-03-17 23:48:38.808 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:38.808 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:48:38.808 -07 000000409 INF: FPGA: Recv ZPIEZORD 24534 17-03-17 23:48:38.818 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:38.818 -07 000000610 INF: Z Motor: Piezo is near 32.4 V (nominally 0 to 100 V), expect near 42.5 V, since DAC is at 4.248 V. Piezo Error = -10.1 V. 17-03-17 23:48:38.818 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.4 um, Read 10 ADC samples: Avg = 29129 (-126.7 uncal um), Error = 0.8 uncal um, Median = 29130 (-126.7 uncal um), StdDev = 4 (0.0 uncal um), Range = 12 (0.1 uncal um), Min = 29122 (-126.6 uncal um), Max = 29134 (-126.7 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 7 (0.0 uncal um) 17-03-17 23:48:38.818 -07 000000610 INF: Z Motor: ADC noise = 7, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29129, posNoise = 5, negNoise = 7 17-03-17 23:48:38.818 -07 000000610 INF: Z Motor: After move to -0.127439, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:48:38.818 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms) 17-03-17 23:48:38.818 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:48:38.818 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:48:38.818 -07 000000409 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:48:38.818 -07 000000482 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:48:38.818 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 23:48:38.818 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 23:48:38.818 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:48:38.818 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 23:48:38.818 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-17 23:48:38.818 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 23:48:38.818 -07 000000480 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:48:38.818 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 23:48:38.828 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 2 ms. 17-03-17 23:48:38.828 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 23:48:38.828 -07 000000480 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 3 ms. 17-03-17 23:48:38.828 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 23:48:38.838 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms. 17-03-17 23:48:38.838 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 19 ms. 17-03-17 23:48:38.838 -07 000000480 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms. 17-03-17 23:48:38.838 -07 000000480 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 20 ms. 17-03-17 23:48:38.838 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 28015 150\n [Camera] 17-03-17 23:48:39.038 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 23:48:40.078 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1232 17-03-17 23:48:40.078 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1232 17-03-17 23:48:40.088 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:48:40.088 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1232 17-03-17 23:48:40.088 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1232 17-03-17 23:48:40.088 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:48:40.088 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:48:40.088 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start. 17-03-17 23:48:40.098 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:48:40.098 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start. 17-03-17 23:48:40.268 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 28015 1422 17-03-17 23:48:40.418 -07 000000618 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572 17-03-17 23:48:40.478 -07 000000409 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 393 ms. 17-03-17 23:48:40.478 -07 000000409 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 393 ms. 17-03-17 23:48:40.488 -07 000000409 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:48:40.488 -07 000000409 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:48:40.488 -07 000000409 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 401 ms. 17-03-17 23:48:40.488 -07 000000482 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 395 ms. 17-03-17 23:48:40.488 -07 000000482 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 396 ms. 17-03-17 23:48:40.488 -07 000000482 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:48:40.498 -07 000000482 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:48:40.498 -07 000000482 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms. 17-03-17 23:48:40.688 -07 000000482 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 78, FrontChillerTemperature: 4.008536, 17-03-17 23:48:40.918 -07 000000438 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072 17-03-17 23:48:40.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072 17-03-17 23:48:40.918 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:48:40.918 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:48:40.928 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) start. 17-03-17 23:48:40.928 -07 000000409 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072 17-03-17 23:48:40.928 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072 17-03-17 23:48:40.928 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:48:40.928 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:48:40.928 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) start. 17-03-17 23:48:41.118 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 2265 17-03-17 23:48:41.118 -07 000000382 INF: FPGA: Recv CAMDBLSNAP 17-03-17 23:48:41.118 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 28015 150' command took 2 ms to send, 2261 ms to get response, and 2272 ms overall 17-03-17 23:48:41.118 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-17 23:48:41.118 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 18 at Y-position 73.17626953125, Z-Position -0.12745422748849. ------ 17-03-17 23:48:41.118 -07 000000618 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:48:41.118 -07 000000480 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.0226 mm, moving Z to -0.13375 mm 17-03-17 23:48:41.118 -07 000000480 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 23:48:41.128 -07 000000382 INF: Y Motor: Entering MoveAbsStepped (target = 118436 steps, sync = True, waitForSettling = True) 17-03-17 23:48:41.128 -07 000000382 INF: Y Motor: Moving to 74.0226 mm, started at 73.1763 mm, delta = 0.8463 mm 17-03-17 23:48:41.128 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:48:41.318 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 2199785120, 0x0, 391868352) end. Duration was 394 ms. 17-03-17 23:48:41.318 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms. 17-03-17 23:48:41.318 -07 000000541 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:48:41.318 -07 000000459 INF: Camera: sBCa_ReadImage(785074704, 2235207384, 0x0, 418435064) end. Duration was 393 ms. 17-03-17 23:48:41.318 -07 000000459 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 393 ms. 17-03-17 23:48:41.318 -07 000000459 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:48:41.328 -07 000000459 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:48:41.328 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms. 17-03-17 23:48:41.328 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms. 17-03-17 23:48:41.328 -07 000000459 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 404 ms. 17-03-17 23:48:41.358 -07 000000541 INF: Z Motor: Entering MoveAbsStepped (DAC = 29219, sync = True, waitForSettling = False) 17-03-17 23:48:41.358 -07 000000541 INF: Z Motor: Moving to -0.133756 mm, started at -0.127454 mm, distance = -6.30 um 17-03-17 23:48:41.358 -07 000000541 INF: FPGA: Xmit ZDACW 29219\n [Z Motor] 17-03-17 23:48:41.358 -07 000000459 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:48:41.358 -07 000000459 INF: FPGA: Recv YRDPOS 149865 17-03-17 23:48:41.358 -07 000000459 INF: FPGA: Recv ZDACW 17-03-17 23:48:41.358 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 229 ms to get response, and 237 ms overall 17-03-17 23:48:41.358 -07 000000382 INF: Y Motor: Encoder = 149865 = motor step 117082.0 = 73.1763 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:48:41.358 -07 000000382 INF: Y Motor: Last commanded position = 73.1926 mm (117108.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 23:48:41.358 -07 000000382 INF: Y Motor: Moving 1354 steps-33 17-03-17 23:48:41.368 -07 000000382 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 23:48:41.368 -07 000000541 INF: FPGA: 'ZDACW 29219' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-17 23:48:41.368 -07 000000618 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 239 ms to get response, and 241 ms overall 17-03-17 23:48:41.378 -07 000000618 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 23:48:41.388 -07 000000541 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:48:41.388 -07 000000459 INF: FPGA: Recv ZDACR 29219 17-03-17 23:48:41.398 -07 000000541 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 29 ms overall 17-03-17 23:48:41.398 -07 000000541 INF: Z Motor: MoveAbsStepped took 35 ms (did NOT wait for settling yet)) 17-03-17 23:48:41.578 -07 000000541 INF: FPGA: Recv FOCMRRFOC 17-03-17 23:48:41.578 -07 000000618 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 192 ms to get response, and 211 ms overall 17-03-17 23:48:41.738 -07 000000541 INF: FPGA: Recv YMVTILE 17-03-17 23:48:41.738 -07 000000382 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 368 ms to get response, and 378 ms overall 17-03-17 23:48:41.778 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:48:41.778 -07 000000459 INF: FPGA: Recv YRDPOS 151569 17-03-17 23:48:41.788 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 7 ms overall 17-03-17 23:48:41.788 -07 000000382 INF: Y Motor: Encoder = 151569 = motor step 118413.3 = 74.0083 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:48:41.788 -07 000000382 INF: Y Motor: Position error before settling (table move) = -29 encoder counts (-0.014 mm) 17-03-17 23:48:41.788 -07 000000382 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 378 ms, distance = 0.846 mm, average velocity = 2.239 mm/sec 17-03-17 23:48:42.098 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:48:42.108 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 77. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1270, R2=1321, Total=2591. Warn if over 250 bubbles per interval. 17-03-17 23:48:42.738 -07 000000382 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:48:42.738 -07 000000541 INF: FPGA: Recv YRDPOS 151570 17-03-17 23:48:42.748 -07 000000382 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:42.748 -07 000000382 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:48:42.768 -07 000000382 INF: Y Motor: After move to 74.022606, error = -0.013817, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 23:48:42.768 -07 000000382 INF: Y Motor: Position error after settling (table move) = -28 encoder counts (-0.014 mm), Delta during settling = 1 counts (0.000 mm) 17-03-17 23:48:42.768 -07 000000382 INF: Y Motor: Moved to 74.0088 after 1640 ms (table move) 17-03-17 23:48:42.768 -07 000000480 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133756 mm (DAC = 29219) 17-03-17 23:48:42.778 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:42.778 -07 000000618 INF: FPGA: Recv ZSGSRD 30109 17-03-17 23:48:42.788 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 14 ms overall 17-03-17 23:48:42.788 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:42.788 -07 000000459 INF: FPGA: Recv ZSGSRD 30107 17-03-17 23:48:42.798 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:42.808 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:42.808 -07 000000459 INF: FPGA: Recv ZSGSRD 30109 17-03-17 23:48:42.818 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 19 ms overall 17-03-17 23:48:42.818 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:42.818 -07 000000459 INF: FPGA: Recv ZSGSRD 30113 17-03-17 23:48:42.828 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:42.828 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:42.828 -07 000000382 INF: FPGA: Recv ZSGSRD 30112 17-03-17 23:48:42.838 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:42.838 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:42.838 -07 000000382 INF: FPGA: Recv ZSGSRD 30114 17-03-17 23:48:42.848 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:42.848 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:42.848 -07 000000618 INF: FPGA: Recv ZSGSRD 30109 17-03-17 23:48:42.858 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:42.858 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:42.858 -07 000000618 INF: FPGA: Recv ZSGSRD 30112 17-03-17 23:48:42.868 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:42.868 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:42.868 -07 000000382 INF: FPGA: Recv ZSGSRD 30114 17-03-17 23:48:42.878 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:42.878 -07 000000480 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:42.878 -07 000000618 INF: FPGA: Recv ZSGSRD 30107 17-03-17 23:48:42.888 -07 000000480 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:42.888 -07 000000480 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:48:42.888 -07 000000541 INF: FPGA: Recv ZPIEZORD 25864 17-03-17 23:48:42.898 -07 000000480 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:42.898 -07 000000480 INF: Z Motor: Piezo is near 35.3 V (nominally 0 to 100 V), expect near 44.6 V, since DAC is at 4.459 V. Piezo Error = -9.3 V. 17-03-17 23:48:42.898 -07 000000480 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.8 um, Read 10 ADC samples: Avg = 30111 (-133.0 uncal um), Error = 0.8 uncal um, Median = 30110 (-133.0 uncal um), StdDev = 3 (0.0 uncal um), Range = 7 (0.0 uncal um), Min = 30107 (-132.9 uncal um), Max = 30114 (-133.0 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 4 (0.0 uncal um) 17-03-17 23:48:42.898 -07 000000480 INF: Z Motor: ADC noise = 4, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30111, posNoise = 3, negNoise = 4 17-03-17 23:48:42.898 -07 000000480 INF: Z Motor: After move to -0.133756, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:48:42.898 -07 000000480 INF: Z Motor: Settle wait time = 1409 ms, measure time = 126 ms (allowed 150 ms), total time = 1535 ms 17-03-17 23:48:42.898 -07 000000480 INF: Z Motor: Waiting extra 24 ms after reading position to reach expected total of 150 ms 17-03-17 23:48:42.928 -07 000000480 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 1802 ms 17-03-17 23:48:42.928 -07 000000480 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 23:48:42.928 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:48:42.928 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:48:42.928 -07 000000618 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:48:42.928 -07 000000433 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:48:42.928 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 23:48:42.928 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:48:42.928 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:48:42.928 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 23:48:42.938 -07 000000541 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-17 23:48:42.938 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 23:48:42.948 -07 000000541 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 10 ms. 17-03-17 23:48:42.948 -07 000000541 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 15 ms. 17-03-17 23:48:42.948 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:48:42.988 -07 000000480 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 23:48:43.288 -07 000000415 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-17 23:48:43.288 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-17 23:48:43.298 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 23:48:43.298 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 615841328, 0x0, 559484976) start. 17-03-17 23:48:43.328 -07 000000480 INF: FPGA: Recv @CAMSNAP 380 17-03-17 23:48:43.328 -07 000000415 INF: FPGA: Recv CAMSNAP 17-03-17 23:48:43.328 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 2 ms to send, 379 ms to get response, and 384 ms overall 17-03-17 23:48:43.418 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 615841328, 0x0, 559484976) end. Duration was 126 ms. 17-03-17 23:48:43.418 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:48:43.418 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-17 23:48:43.418 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms. 17-03-17 23:48:43.528 -07 000000433 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:48:43.528 -07 000000623 INF: Autofocus start 17-03-17 23:48:43.528 -07 000000623 INF: MeasureProfile start 17-03-17 23:48:43.528 -07 000000382 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:48:43.538 -07 000000433 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 6 ms overall 17-03-17 23:48:43.538 -07 000000433 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 23:48:43.538 -07 000000623 INF: MeasureProfile done 17-03-17 23:48:43.538 -07 000000623 INF: X=16 Z correction [um]=0.0530179 17-03-17 23:48:43.538 -07 000000623 INF: Autofocus finished 17-03-17 23:48:43.738 -07 000000415 INF: FPGA: Recv FOCMRRIMG 17-03-17 23:48:43.738 -07 000000433 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 23:48:43.738 -07 000000610 INF: ------------ Scan Snapping tile 18 at Y-position 74.0087890625, Z-position -0.133762803811699. ---------- 17-03-17 23:48:43.738 -07 000000610 INF: Cycle 78 Tile 18 Exposure Settings A 1037 G 500 T 500 C 1037 17-03-17 23:48:43.738 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27743, sync = True, waitForSettling = True) 17-03-17 23:48:43.748 -07 000000610 INF: Z Motor: Moving to -0.126999 mm, started at -0.133763 mm, distance = 6.76 um 17-03-17 23:48:43.748 -07 000000610 INF: FPGA: Xmit ZDACW 27743\n [Z Motor] 17-03-17 23:48:43.748 -07 000000382 INF: FPGA: Recv ZDACW 17-03-17 23:48:43.758 -07 000000610 INF: FPGA: 'ZDACW 27743' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:48:43.758 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:48:43.758 -07 000000415 INF: FPGA: Recv ZDACR 27743 17-03-17 23:48:43.768 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:43.768 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:48:43.918 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:43.918 -07 000000415 INF: FPGA: Recv ZSGSRD 29065 17-03-17 23:48:43.928 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:48:43.928 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:43.928 -07 000000415 INF: FPGA: Recv ZSGSRD 29058 17-03-17 23:48:43.938 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:43.938 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:43.938 -07 000000415 INF: FPGA: Recv ZSGSRD 29060 17-03-17 23:48:43.948 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:43.948 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:43.948 -07 000000415 INF: FPGA: Recv ZSGSRD 29054 17-03-17 23:48:43.958 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:43.958 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:43.958 -07 000000415 INF: FPGA: Recv ZSGSRD 29064 17-03-17 23:48:43.968 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:43.968 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:43.968 -07 000000618 INF: FPGA: Recv ZSGSRD 29063 17-03-17 23:48:43.978 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:43.978 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:43.978 -07 000000618 INF: FPGA: Recv ZSGSRD 29057 17-03-17 23:48:43.988 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:43.988 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:43.988 -07 000000618 INF: FPGA: Recv ZSGSRD 29052 17-03-17 23:48:43.998 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:43.998 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:43.998 -07 000000475 INF: FPGA: Recv ZSGSRD 29060 17-03-17 23:48:44.008 -07 000000610 INF: FPGA: 'ZSGSRD' command took 1 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:44.008 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:44.008 -07 000000541 INF: FPGA: Recv ZSGSRD 29063 17-03-17 23:48:44.018 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:44.018 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:48:44.018 -07 000000475 INF: FPGA: Recv ZPIEZORD 24493 17-03-17 23:48:44.028 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:44.028 -07 000000610 INF: Z Motor: Piezo is near 32.3 V (nominally 0 to 100 V), expect near 42.3 V, since DAC is at 4.233 V. Piezo Error = -10.0 V. 17-03-17 23:48:44.028 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -127.0 um, Read 10 ADC samples: Avg = 29060 (-126.2 uncal um), Error = 0.8 uncal um, Median = 29060 (-126.2 uncal um), StdDev = 4 (0.0 uncal um), Range = 13 (0.1 uncal um), Min = 29052 (-126.2 uncal um), Max = 29065 (-126.3 uncal um), Pos Noise = 5 (0.0 uncal um), Neg Noise = 8 (0.1 uncal um) 17-03-17 23:48:44.028 -07 000000610 INF: Z Motor: ADC noise = 8, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 29060, posNoise = 5, negNoise = 8 17-03-17 23:48:44.028 -07 000000610 INF: Z Motor: After move to -0.126999, error = -0.000012, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:48:44.028 -07 000000610 INF: Z Motor: MoveAbsStepped took 281 ms) 17-03-17 23:48:44.028 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:48:44.028 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:48:44.028 -07 000000382 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:48:44.028 -07 000000448 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:48:44.028 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 23:48:44.028 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 23:48:44.028 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 23:48:44.028 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:48:44.028 -07 000000618 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 1 ms. 17-03-17 23:48:44.028 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 23:48:44.028 -07 000000459 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:48:44.028 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 23:48:44.038 -07 000000618 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-17 23:48:44.038 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 23:48:44.038 -07 000000459 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 4 ms. 17-03-17 23:48:44.038 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 23:48:44.048 -07 000000618 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms. 17-03-17 23:48:44.048 -07 000000618 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms. 17-03-17 23:48:44.048 -07 000000459 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 15 ms. 17-03-17 23:48:44.048 -07 000000459 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms. 17-03-17 23:48:44.058 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 27920 150\n [Camera] 17-03-17 23:48:44.258 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 23:48:45.288 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1230 17-03-17 23:48:45.288 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1230 17-03-17 23:48:45.298 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:48:45.298 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:48:45.298 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) start. 17-03-17 23:48:45.298 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1230 17-03-17 23:48:45.298 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1230 17-03-17 23:48:45.298 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:48:45.298 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:48:45.298 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) start. 17-03-17 23:48:45.488 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27920 1423 17-03-17 23:48:45.628 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572 17-03-17 23:48:45.668 -07 000000618 INF: Camera: sBCa_ReadImage(785074704, 1113297000, 0x0, 418435064) end. Duration was 375 ms. 17-03-17 23:48:45.668 -07 000000618 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 376 ms. 17-03-17 23:48:45.668 -07 000000618 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:48:45.678 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:48:45.678 -07 000000480 INF: Camera: sBCa_ReadImage(785074288, 1077874736, 0x0, 391868352) end. Duration was 383 ms. 17-03-17 23:48:45.678 -07 000000480 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 384 ms. 17-03-17 23:48:45.678 -07 000000480 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:48:45.678 -07 000000480 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:48:45.678 -07 000000480 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 387 ms. 17-03-17 23:48:45.678 -07 000000618 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 387 ms. 17-03-17 23:48:46.048 -07 000000480 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 78, FrontChillerTemperature: 3.981281, 17-03-17 23:48:46.138 -07 000000433 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072 17-03-17 23:48:46.138 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072 17-03-17 23:48:46.138 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:48:46.138 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:48:46.138 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) start. 17-03-17 23:48:46.138 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072 17-03-17 23:48:46.138 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072 17-03-17 23:48:46.138 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:48:46.138 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:48:46.138 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) start. 17-03-17 23:48:46.328 -07 000000480 INF: FPGA: Recv @CAMDBLSNAP 2264 17-03-17 23:48:46.328 -07 000000415 INF: FPGA: Recv CAMDBLSNAP 17-03-17 23:48:46.328 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 27920 150' command took 2 ms to send, 2262 ms to get response, and 2272 ms overall 17-03-17 23:48:46.448 -07 000000610 INF: TopSurface Best Z is: -0.172880 - BottomSurface Best Z is: -0.133503 - Using FocusModel for surface 1 - Best Z for this model is: -0.133503 17-03-17 23:48:46.448 -07 000000610 INF: ----- AutoFocus: Snapping image at tile 19 at Y-position 74.0087890625, Z-Position -0.127010956850708. ------ 17-03-17 23:48:46.448 -07 000000475 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:48:46.448 -07 000000382 INF: Y Motor: MoveYZ optimized starting. Moving Y to 74.8526 mm, moving Z to -0.13309 mm 17-03-17 23:48:46.448 -07 000000382 INF: Y Motor: Temporarily changing Y settling times from 3000 or 1100 to 2850 or 950 ms because of parallel Y move 17-03-17 23:48:46.458 -07 000000415 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:48:46.458 -07 000000475 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-17 23:48:46.458 -07 000000448 INF: Z Motor: Entering MoveAbsStepped (DAC = 29074, sync = True, waitForSettling = False) 17-03-17 23:48:46.458 -07 000000623 INF: Y Motor: Entering MoveAbsStepped (target = 119764 steps, sync = True, waitForSettling = True) 17-03-17 23:48:46.458 -07 000000475 INF: FPGA: Xmit FOCMRRFOC\n [FocusMirror] 17-03-17 23:48:46.458 -07 000000448 INF: Z Motor: Moving to -0.133092 mm, started at -0.127011 mm, distance = -6.08 um 17-03-17 23:48:46.458 -07 000000623 INF: Y Motor: Moving to 74.8526 mm, started at 74.0088 mm, delta = 0.8438 mm 17-03-17 23:48:46.468 -07 000000448 INF: FPGA: Xmit ZDACW 29074\n [Z Motor] 17-03-17 23:48:46.468 -07 000000459 INF: FPGA: Recv ZDACW 17-03-17 23:48:46.478 -07 000000448 INF: FPGA: 'ZDACW 29074' command took 0 ms to send, 0 ms to get response, and 18 ms overall 17-03-17 23:48:46.478 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:48:46.478 -07 000000480 INF: FPGA: Recv YRDPOS 151570 17-03-17 23:48:46.488 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 28 ms overall 17-03-17 23:48:46.488 -07 000000623 INF: Y Motor: Encoder = 151570 = motor step 118414.1 = 74.0088 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:48:46.488 -07 000000623 INF: Y Motor: Last commanded position = 74.0226 mm (118436.2 steps), delta from last commanded position = 0.8300 mm (1328.0 steps). UsingTableMove = True 17-03-17 23:48:46.488 -07 000000623 INF: Y Motor: Moving 1350 steps-29 17-03-17 23:48:46.488 -07 000000448 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:48:46.498 -07 000000623 INF: FPGA: Xmit YMVTILE 1327\n [Y Motor] 17-03-17 23:48:46.538 -07 000000618 INF: Camera: sBCa_ReadImage(785074288, 1148719264, 0x0, 391868352) end. Duration was 399 ms. 17-03-17 23:48:46.538 -07 000000618 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 399 ms. 17-03-17 23:48:46.538 -07 000000618 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:48:46.538 -07 000000433 INF: Camera: sBCa_ReadImage(785074704, 2281705520, 0x0, 418435064) end. Duration was 399 ms. 17-03-17 23:48:46.538 -07 000000433 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms. 17-03-17 23:48:46.538 -07 000000433 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:48:46.538 -07 000000433 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:48:46.538 -07 000000618 INF: Camera: CopyActivePixFullImage end. Duration was 7 ms. 17-03-17 23:48:46.538 -07 000000618 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 407 ms. 17-03-17 23:48:46.548 -07 000000433 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 412 ms. 17-03-17 23:48:47.388 -07 000000541 INF: FPGA: Recv ZDACR 29074 17-03-17 23:48:47.388 -07 000000541 INF: FPGA: Recv FOCMRRFOC 17-03-17 23:48:47.388 -07 000000541 INF: FPGA: Recv YMVTILE 17-03-17 23:48:47.388 -07 000000541 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:48:47.388 -07 000000623 INF: FPGA: 'YMVTILE 1327' command took 0 ms to send, 880 ms to get response, and 899 ms overall 17-03-17 23:48:47.388 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 77. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1270, R2=1321, Total=2591. Warn if over 250 bubbles per interval. 17-03-17 23:48:47.388 -07 000000448 INF: FPGA: 'ZDACR' command took 0 ms to send, 890 ms to get response, and 910 ms overall 17-03-17 23:48:47.388 -07 000000448 INF: Z Motor: MoveAbsStepped took 930 ms (did NOT wait for settling yet)) 17-03-17 23:48:47.388 -07 000000475 INF: FPGA: 'FOCMRRFOC' command took 0 ms to send, 920 ms to get response, and 929 ms overall 17-03-17 23:48:47.408 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:48:47.418 -07 000000502 INF: FPGA: Recv YRDPOS 153256 17-03-17 23:48:47.418 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 2 ms to get response, and 2 ms overall 17-03-17 23:48:47.418 -07 000000623 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:48:47.418 -07 000000623 INF: Y Motor: Position error before settling (table move) = -42 encoder counts (-0.021 mm) 17-03-17 23:48:47.418 -07 000000623 INF: Y Motor: FPGA table move command 'YMVTILE 1327' took 900 ms, distance = 0.844 mm, average velocity = 0.938 mm/sec 17-03-17 23:48:48.368 -07 000000623 INF: FPGA: Xmit YRDPOS\n [Y Motor] 17-03-17 23:48:48.368 -07 000000448 INF: FPGA: Recv YRDPOS 153256 17-03-17 23:48:48.378 -07 000000623 INF: FPGA: 'YRDPOS' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:48.378 -07 000000623 INF: Y Motor: Encoder = 153256 = motor step 119731.3 = 74.8320 mm (step is ~0.63 um, encoder count is ~0.49 um) 17-03-17 23:48:48.388 -07 000000623 INF: Y Motor: After move to 74.852608, error = -0.020576, min/max error = -0.022606/0.004186, tolerance = 0.500000 mm 17-03-17 23:48:48.388 -07 000000623 INF: Y Motor: Position error after settling (table move) = -42 encoder counts (-0.021 mm), Delta during settling = 0 counts (0.000 mm) 17-03-17 23:48:48.388 -07 000000623 INF: Y Motor: Moved to 74.8320 after 1935 ms (table move) 17-03-17 23:48:48.398 -07 000000382 INF: Z Motor: EndOfMoveAbsStepped: target = -0.133092 mm (DAC = 29074) 17-03-17 23:48:48.398 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:48.398 -07 000000623 INF: FPGA: Recv ZSGSRD 30007 17-03-17 23:48:48.408 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:48.408 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:48.408 -07 000000459 INF: FPGA: Recv ZSGSRD 30011 17-03-17 23:48:48.418 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:48.418 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:48.418 -07 000000502 INF: FPGA: Recv ZSGSRD 30008 17-03-17 23:48:48.428 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:48.428 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:48.428 -07 000000448 INF: FPGA: Recv ZSGSRD 30006 17-03-17 23:48:48.438 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:48.438 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:48.438 -07 000000459 INF: FPGA: Recv ZSGSRD 30011 17-03-17 23:48:48.448 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:48.448 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:48.448 -07 000000623 INF: FPGA: Recv ZSGSRD 30010 17-03-17 23:48:48.458 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:48.458 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:48.458 -07 000000502 INF: FPGA: Recv ZSGSRD 30010 17-03-17 23:48:48.468 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:48.468 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:48.468 -07 000000541 INF: FPGA: Recv ZSGSRD 30007 17-03-17 23:48:48.478 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:48.478 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:48.478 -07 000000448 INF: FPGA: Recv ZSGSRD 30007 17-03-17 23:48:48.488 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:48.488 -07 000000382 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:48.488 -07 000000459 INF: FPGA: Recv ZSGSRD 30011 17-03-17 23:48:48.498 -07 000000382 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:48.498 -07 000000382 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:48:48.498 -07 000000475 INF: FPGA: Recv ZPIEZORD 25778 17-03-17 23:48:48.508 -07 000000382 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:48.508 -07 000000382 INF: Z Motor: Piezo is near 35.1 V (nominally 0 to 100 V), expect near 44.4 V, since DAC is at 4.436 V. Piezo Error = -9.3 V. 17-03-17 23:48:48.508 -07 000000382 INF: Z Motor: ReadAdcAverage: Commanded Z = -133.1 um, Read 10 ADC samples: Avg = 30009 (-132.3 uncal um), Error = 0.8 uncal um, Median = 30009 (-132.3 uncal um), StdDev = 2 (0.0 uncal um), Range = 5 (0.0 uncal um), Min = 30006 (-132.3 uncal um), Max = 30011 (-132.3 uncal um), Pos Noise = 2 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um) 17-03-17 23:48:48.508 -07 000000382 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 30009, posNoise = 2, negNoise = 3 17-03-17 23:48:48.508 -07 000000382 INF: Z Motor: After move to -0.133092, error = -0.000015, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:48:48.508 -07 000000382 INF: Z Motor: Settle wait time = 1938 ms, measure time = 111 ms (allowed 150 ms), total time = 2049 ms 17-03-17 23:48:48.508 -07 000000382 INF: Z Motor: Waiting extra 39 ms after reading position to reach expected total of 150 ms 17-03-17 23:48:48.548 -07 000000382 INF: Y Motor: MoveYZ optimized (reads Z position after Y move and settle) took 2092 ms 17-03-17 23:48:48.548 -07 000000382 INF: Y Motor: Restored settling times back to 3000 or 1100 ms 17-03-17 23:48:48.548 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:48:48.548 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:48:48.548 -07 000000459 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:48:48.548 -07 000000541 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:48:48.548 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger start. 17-03-17 23:48:48.548 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:48:48.548 -07 000000448 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 1 ms. 17-03-17 23:48:48.548 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) start. 17-03-17 23:48:48.558 -07 000000448 INF: Camera: sBCa_DisarmCaptureImageROITriggered(785074288) end. Duration was 2 ms. 17-03-17 23:48:48.558 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) start. 17-03-17 23:48:48.568 -07 000000448 INF: Camera: sBCa_ArmCaptureImageROITriggered(785074288, 1024, 512, 255) end. Duration was 12 ms. 17-03-17 23:48:48.568 -07 000000448 INF: Disarm and arm camera sensor 0: ROITrigger end. Duration was 16 ms. 17-03-17 23:48:48.568 -07 000000610 INF: FPGA: Xmit CAMSNAP 1 2 300\n [Camera] 17-03-17 23:48:48.618 -07 000000382 INF: FPGA: Recv @CAMSNAP turning led on 40 17-03-17 23:48:48.918 -07 000000541 INF: FPGA: Recv @CAMSNAP img rdy 340 17-03-17 23:48:48.918 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name Focus T. Args Cmd: img rdy 340 17-03-17 23:48:48.918 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. start. 17-03-17 23:48:48.918 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) start. 17-03-17 23:48:48.958 -07 000000541 INF: FPGA: Recv @CAMSNAP 380 17-03-17 23:48:48.958 -07 000000382 INF: FPGA: Recv CAMSNAP 17-03-17 23:48:48.958 -07 000000610 INF: FPGA: 'CAMSNAP 1 2 300' command took 1 ms to send, 382 ms to get response, and 384 ms overall 17-03-17 23:48:49.048 -07 000000005 INF: Camera: sBCa_ReadImageROI(785074288, 1024, 512, 574918816, 0x0, 559484976) end. Duration was 127 ms. 17-03-17 23:48:49.048 -07 000000005 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:48:49.048 -07 000000005 INF: Camera: CopyActivePixFullImage end. Duration was 0 ms. 17-03-17 23:48:49.048 -07 000000005 INF: Camera 1: ReadROIImage (data transfer) from sensor 0. end. Duration was 129 ms. 17-03-17 23:48:49.058 -07 000000623 INF: Autofocus start 17-03-17 23:48:49.058 -07 000000623 INF: MeasureProfile start 17-03-17 23:48:49.058 -07 000000448 INF: FPGA: Xmit FOCMRRCUR 80\n [FocusMirror] 17-03-17 23:48:49.058 -07 000000382 INF: FPGA: Recv FOCMRRCUR 17-03-17 23:48:49.068 -07 000000448 INF: FPGA: 'FOCMRRCUR 80' command took 0 ms to send, 0 ms to get response, and 4 ms overall 17-03-17 23:48:49.068 -07 000000448 INF: FPGA: Xmit FOCMRRIMG\n [FocusMirror] 17-03-17 23:48:49.068 -07 000000623 INF: MeasureProfile done 17-03-17 23:48:49.068 -07 000000623 INF: X=16 Z correction [um]=0.0530179 17-03-17 23:48:49.068 -07 000000623 INF: Autofocus finished 17-03-17 23:48:49.268 -07 000000475 INF: FPGA: Recv FOCMRRIMG 17-03-17 23:48:49.268 -07 000000448 INF: FPGA: 'FOCMRRIMG' command took 0 ms to send, 193 ms to get response, and 202 ms overall 17-03-17 23:48:49.268 -07 000000610 INF: ------------ Scan Snapping tile 19 at Y-position 74.83203125, Z-position -0.13310753417324. ---------- 17-03-17 23:48:49.268 -07 000000610 INF: Cycle 78 Tile 19 Exposure Settings A 1037 G 500 T 500 C 1037 17-03-17 23:48:49.278 -07 000000610 INF: Z Motor: Entering MoveAbsStepped (DAC = 27598, sync = True, waitForSettling = True) 17-03-17 23:48:49.278 -07 000000610 INF: Z Motor: Moving to -0.126336 mm, started at -0.133108 mm, distance = 6.77 um 17-03-17 23:48:49.278 -07 000000610 INF: FPGA: Xmit ZDACW 27598\n [Z Motor] 17-03-17 23:48:49.278 -07 000000547 INF: FPGA: Recv ZDACW 17-03-17 23:48:49.288 -07 000000610 INF: FPGA: 'ZDACW 27598' command took 0 ms to send, 0 ms to get response, and 8 ms overall 17-03-17 23:48:49.288 -07 000000610 INF: FPGA: Xmit ZDACR\n [Z Motor] 17-03-17 23:48:49.288 -07 000000502 INF: FPGA: Recv ZDACR 27598 17-03-17 23:48:49.298 -07 000000610 INF: FPGA: 'ZDACR' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:49.298 -07 000000610 INF: Z Motor: Waiting 150 ms for short move 17-03-17 23:48:49.448 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:49.448 -07 000000459 INF: FPGA: Recv ZSGSRD 28958 17-03-17 23:48:49.458 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 10 ms overall 17-03-17 23:48:49.458 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:49.458 -07 000000541 INF: FPGA: Recv ZSGSRD 28956 17-03-17 23:48:49.468 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:49.468 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:49.468 -07 000000448 INF: FPGA: Recv ZSGSRD 28955 17-03-17 23:48:49.478 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:49.478 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:49.478 -07 000000547 INF: FPGA: Recv ZSGSRD 28955 17-03-17 23:48:49.488 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:49.488 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:49.488 -07 000000475 INF: FPGA: Recv ZSGSRD 28957 17-03-17 23:48:49.498 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:49.498 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:49.498 -07 000000541 INF: FPGA: Recv ZSGSRD 28958 17-03-17 23:48:49.508 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:49.508 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:49.508 -07 000000502 INF: FPGA: Recv ZSGSRD 28954 17-03-17 23:48:49.518 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:49.518 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:49.518 -07 000000382 INF: FPGA: Recv ZSGSRD 28959 17-03-17 23:48:49.528 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:49.528 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:49.528 -07 000000502 INF: FPGA: Recv ZSGSRD 28956 17-03-17 23:48:49.538 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:49.538 -07 000000610 INF: FPGA: Xmit ZSGSRD\n [Z Motor] 17-03-17 23:48:49.538 -07 000000623 INF: FPGA: Recv ZSGSRD 28953 17-03-17 23:48:49.548 -07 000000610 INF: FPGA: 'ZSGSRD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:49.548 -07 000000610 INF: FPGA: Xmit ZPIEZORD\n [Z Motor] 17-03-17 23:48:49.548 -07 000000541 INF: FPGA: Recv ZPIEZORD 24419 17-03-17 23:48:49.558 -07 000000610 INF: FPGA: 'ZPIEZORD' command took 0 ms to send, 0 ms to get response, and 9 ms overall 17-03-17 23:48:49.558 -07 000000610 INF: Z Motor: Piezo is near 32.2 V (nominally 0 to 100 V), expect near 42.1 V, since DAC is at 4.211 V. Piezo Error = -9.9 V. 17-03-17 23:48:49.558 -07 000000610 INF: Z Motor: ReadAdcAverage: Commanded Z = -126.3 um, Read 10 ADC samples: Avg = 28956 (-125.6 uncal um), Error = 0.8 uncal um, Median = 28956 (-125.6 uncal um), StdDev = 2 (0.0 uncal um), Range = 6 (0.0 uncal um), Min = 28953 (-125.6 uncal um), Max = 28959 (-125.6 uncal um), Pos Noise = 3 (0.0 uncal um), Neg Noise = 3 (0.0 uncal um) 17-03-17 23:48:49.558 -07 000000610 INF: Z Motor: ADC noise = 3, warning limit = 655, error limit = 3277, numSamples = 10x8, avg = 28956, posNoise = 3, negNoise = 3 17-03-17 23:48:49.558 -07 000000610 INF: Z Motor: After move to -0.126336, error = -0.000007, min/max error = -0.000831/0.000062, tolerance = 0.004001 mm 17-03-17 23:48:49.558 -07 000000610 INF: Z Motor: MoveAbsStepped took 279 ms) 17-03-17 23:48:49.558 -07 000000610 INF: GreenLED: Using Green data: Target power 180 mW --> 5964.0 mA drive current 17-03-17 23:48:49.558 -07 000000610 INF: RedLED: Using Red data: Target power 205 mW --> 1930.0 mA drive current 17-03-17 23:48:49.558 -07 000000623 INF: RedLED: Enabling LED using existing current: 1930 mA (862 DAC). 17-03-17 23:48:49.558 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger start. 17-03-17 23:48:49.558 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) start. 17-03-17 23:48:49.558 -07 000000547 INF: GreenLED: Enabling LED using existing current: 5964 mA (2663 DAC). 17-03-17 23:48:49.558 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger start. 17-03-17 23:48:49.558 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) start. 17-03-17 23:48:49.558 -07 000000475 INF: Camera: sBCa_GetPowerMode(785074288) end. Duration was 2 ms. 17-03-17 23:48:49.558 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) start. 17-03-17 23:48:49.558 -07 000000541 INF: Camera: sBCa_GetPowerMode(785074704) end. Duration was 0 ms. 17-03-17 23:48:49.558 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) start. 17-03-17 23:48:49.568 -07 000000475 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074288) end. Duration was 2 ms. 17-03-17 23:48:49.568 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) start. 17-03-17 23:48:49.568 -07 000000541 INF: Camera: sBCa_DisarmCaptureTwoImagesTriggered(785074704) end. Duration was 3 ms. 17-03-17 23:48:49.568 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) start. 17-03-17 23:48:49.578 -07 000000475 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074288, 255) end. Duration was 16 ms. 17-03-17 23:48:49.578 -07 000000475 INF: Disarm and arm camera sensor 0: TwoImagesTrigger end. Duration was 21 ms. 17-03-17 23:48:49.578 -07 000000541 INF: Camera: sBCa_ArmCaptureTwoImagesTriggered(785074704, 255) end. Duration was 15 ms. 17-03-17 23:48:49.578 -07 000000541 INF: Disarm and arm camera sensor 1: TwoImagesTrigger end. Duration was 21 ms. 17-03-17 23:48:49.578 -07 000000610 INF: FPGA: Xmit CAMDBLSNAP 1037 1037 500 500 27774 150\n [Camera] 17-03-17 23:48:49.788 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP turning red on 192 17-03-17 23:48:50.828 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP cam1 red img rdy 1229 17-03-17 23:48:50.828 -07 000000005 INF: Reading out camIdx 0 ledIdx 0 channel image index 3 channel name C. Args Cmd: cam1 red img rdy 1229 17-03-17 23:48:50.828 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:48:50.828 -07 000000547 INF: FPGA: Recv @CAMDBLSNAP cam2 red img rdy 1229 17-03-17 23:48:50.828 -07 000000005 INF: Reading out camIdx 1 ledIdx 0 channel image index 0 channel name A. Args Cmd: cam2 red img rdy 1229 17-03-17 23:48:50.828 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:48:50.828 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:48:50.828 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) start. 17-03-17 23:48:50.828 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:48:50.828 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) start. 17-03-17 23:48:51.018 -07 000000475 INF: FPGA: Recv @CAMDBLSNAP Zmove 150 ms 27774 1422 17-03-17 23:48:51.168 -07 000000541 INF: FPGA: Recv @CAMDBLSNAP turning grn on 1572 17-03-17 23:48:51.218 -07 000000502 INF: Camera: sBCa_ReadImage(785074288, 1389170736, 0x0, 391868352) end. Duration was 393 ms. 17-03-17 23:48:51.218 -07 000000502 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 394 ms. 17-03-17 23:48:51.218 -07 000000502 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:48:51.228 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:48:51.228 -07 000000502 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 402 ms. 17-03-17 23:48:51.228 -07 000000623 INF: Camera: sBCa_ReadImage(785074704, 1424593000, 0x0, 418435064) end. Duration was 395 ms. 17-03-17 23:48:51.228 -07 000000623 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 395 ms. 17-03-17 23:48:51.228 -07 000000623 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:48:51.228 -07 000000623 INF: Camera: CopyActivePixFullImage end. Duration was 4 ms. 17-03-17 23:48:51.238 -07 000000623 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 411 ms. 17-03-17 23:48:51.408 -07 000000382 INF: Predictive Diagnostic Log Reagent Chiller Temperature Below Limit: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 78, FrontChillerTemperature: 4.003063, 17-03-17 23:48:51.668 -07 000000561 INF: FPGA: Recv @CAMDBLSNAP cam1 grn img rdy 2072 17-03-17 23:48:51.668 -07 000000005 INF: Reading out camIdx 0 ledIdx 1 channel image index 2 channel name T. Args Cmd: cam1 grn img rdy 2072 17-03-17 23:48:51.668 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. start. 17-03-17 23:48:51.668 -07 000000448 INF: FPGA: Recv @CAMDBLSNAP cam2 grn img rdy 2072 17-03-17 23:48:51.668 -07 000000005 INF: Reading out camIdx 1 ledIdx 1 channel image index 1 channel name G. Args Cmd: cam2 grn img rdy 2072 17-03-17 23:48:51.668 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. start. 17-03-17 23:48:51.678 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. start. 17-03-17 23:48:51.678 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) start. 17-03-17 23:48:51.678 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. start. 17-03-17 23:48:51.678 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) start. 17-03-17 23:48:51.858 -07 000000382 INF: FPGA: Recv @CAMDBLSNAP 2265 17-03-17 23:48:51.858 -07 000000561 INF: FPGA: Recv CAMDBLSNAP 17-03-17 23:48:51.858 -07 000000610 INF: FPGA: 'CAMDBLSNAP 1037 1037 500 500 27774 150' command took 2 ms to send, 2264 ms to get response, and 2275 ms overall 17-03-17 23:48:52.078 -07 000000541 INF: Camera: sBCa_ReadImage(785074288, 1460015264, 0x0, 391868352) end. Duration was 400 ms. 17-03-17 23:48:52.078 -07 000000541 INF: Camera 1: ReadSquareImageHardwareTrigger (data transfer) from sensor 0. end. Duration was 400 ms. 17-03-17 23:48:52.078 -07 000000541 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:48:52.078 -07 000000502 INF: Camera: sBCa_ReadImage(785074704, 1077874736, 0x0, 418435064) end. Duration was 398 ms. 17-03-17 23:48:52.078 -07 000000502 INF: Camera 2: ReadSquareImageHardwareTrigger (data transfer) from sensor 1. end. Duration was 399 ms. 17-03-17 23:48:52.078 -07 000000502 INF: Camera: CopyActivePixFullImage start. 17-03-17 23:48:52.078 -07 000000541 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:48:52.078 -07 000000541 INF: Camera 1: ReadSquareImage (data transfer) from sensor 0. end. Duration was 411 ms. 17-03-17 23:48:52.078 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) start. 17-03-17 23:48:52.078 -07 000000502 INF: Camera: CopyActivePixFullImage end. Duration was 3 ms. 17-03-17 23:48:52.088 -07 000000502 INF: Camera 2: ReadSquareImage (data transfer) from sensor 1. end. Duration was 418 ms. 17-03-17 23:48:52.098 -07 000000382 INF: FPGA: Recv @BUBEN2 C2 0 C1 0 R2 0 R1 0 17-03-17 23:48:52.108 -07 000000005 INF: Predictive Diagnostics Bubble Status: CyclesCompleted: 77. Bubbles during last 5000 ms interval: R1=0, R2=0, Total=0. Max bubbles per interval: R1=25, R2=22, Total=47. Bubbles this run: R1=1270, R2=1321, Total=2591. Warn if over 250 bubbles per interval. 17-03-17 23:48:52.118 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074288, 0) end. Duration was 42 ms. 17-03-17 23:48:52.118 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) start. 17-03-17 23:48:52.168 -07 000000610 INF: Camera: sBCa_SetPowerMode(785074704, 0) end. Duration was 42 ms. 17-03-17 23:48:52.298 -07 000000610 INF: Enabling Skipping AutoFocus in the next 0 cycles. 17-03-17 23:48:52.298 -07 000000610 INF: Imaging Cycle 78: ScanTilesCommand Cycle 78 time end. Duration was 204154 ms. 17-03-17 23:48:52.298 -07 000000610 INF: =================== Cycle #78 =================== 17-03-17 23:48:52.298 -07 000000610 INF: =================== =================== 17-03-17 23:48:52.298 -07 000000448 INF: FPGA: Xmit EXLED1ADCR\n [GreenLED] 17-03-17 23:48:52.298 -07 000000561 INF: FPGA: Recv EXLED1ADCR 27 17-03-17 23:48:52.308 -07 000000448 INF: FPGA: 'EXLED1ADCR' command took 0 ms to send, 0 ms to get response, and 3 ms overall 17-03-17 23:48:52.308 -07 000000448 INF: GreenLED: Using Green data: Photodiode ADC 27 --> 0.0 mW (old method), or 2.0 mW (new method). Difference = 2.0 mW 17-03-17 23:48:52.308 -07 000000448 INF: Predictive Diagnostic Log Cycle Entry Metrics: RunId: 170317_M03814_0172_000000000-B2K79, InstrumentID: M03814, TotalCycles 158, CycleNumber: 78, FrontChillerTemperature: 4.003063, FrontChillerHeatSinkTemperature: 0.405666, AmbientTemperature: 18.5364, FlowCellCompartmentTemperature: 21.99981, FlowCellTargetTemperature: 22, FlowCellHeatSinkTemperature: 18.11009, GreenLEDSensorTemperature: 29.97964, PhotodiodePowerAdcGreen: 27, PhotodiodePowerMwGreen: 2.018235 17-03-17 23:48:52.358 -07 000000610 INF: Y-Drift Offset assigned 0.002126916.